Update README.md

Author: GabrielOnDelphi

README.md

@@ -1,2 +1,35 @@
 # BioInf
-Library for reading microbiology DNA files (ABI, SCF, FASTA, etc)
+Library for reading microbiology DNA files (ABI, SCF, FASTA, etc).
+Requires LightSaber base library.
+
+Allows you to:
+ * read/write SCF files
+ * read ABI/AB/AB1/AB! files
+ * read/write FASTA files
+ * read/write GeneBank (GBK) files.
+
+ All this functionality is accessible with simple access to TCubeImport.Import(FileName) 
+
+  TCube = class(TCubeAbstractSnp)
+  public
+   {IMPORT}
+   function  Import(CONST FileName: string): Boolean;                                                         { Fasta and GBK files are not supported because they may contain more than one sample! }
+   function  AssignGBK     (CONST Gbk : TGbkObj): Boolean;
+   function  AssignScf     (CONST SCF : TScfObj): boolean;
+   function  AssignAbi     (CONST ABI : TAbiObj; EditedField: boolean= True): Boolean;                        { parametrul EditedFiled= arata de unde sa extraga informatia: din campul original sau din campul EDITED }
+   function  AssignSecv    (CONST SECV: TFastaObj): Boolean;
+   property  Version: string  read FParentVer  Write FParentVer;                                              { ce versiune a avut obiectul parinte. Exemplu, pt SCF: '3.00' }
+
+   {EXPORT}
+   function  ExportBack    (CONST Clean: Boolean; OUT BasesLeft: Integer): Boolean;                           { Save the object back to disk, in its original format. This will overwrite the parent sample }
+   function  ExportAs      (CONST aFileName: string; Clean: Boolean; OUT BasesLeft: Integer): Boolean;        { Autodetecteaza tipul secventei din numele fisierului. QvAware=True transfera numai cu bazele QV bun }
+   procedure ExportAsFASTA (CONST                    Clean: Boolean; OUT BasesLeft: Integer); overload;       { uses cube's name and changes its extension to 'fasta' }
+   procedure ExportAsFASTA (CONST FileName : string; Clean: Boolean; OUT BasesLeft: Integer); overload;
+   procedure ExportAsSecv  (CONST NewName  : string; Clean: Boolean; OUT BasesLeft: Integer);
+   procedure ExportToSCF   (CONST aFileName: string; Clean: Boolean);            overload;                    { This will remove all GAPs }
+   function  ExportToSCF   (CONST                    Clean: Boolean): string;    overload;                    { Returns the name used to save the file }
+   function  AsFasta       (CONST aFileName: string; Clean: Boolean): TFastaObj; overload;                    { Return a TFastaObj object built from this cube }
+   function  AsFasta       (CONST                    Clean: Boolean): TFastaObj; overload;                    { Same as above but the user doesnt have to provide a file name. It is automatically assumed from Cube's name }
+
+   procedure SaveChromaAsBmp(CONST Nume: string);
+ end;