README.Rmd

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output: github_document
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# GerminaR <img src="man/figures/logo.png" align="right" width="200" />

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GerminaR is a platform base in open source R package to calculate and graphic the main germination indices. GerminaR include a web application called "GerminQuant for R" for interactive analysis.

## Installation

You can install the released version of GerminaR from [CRAN](https://cran.r-project.org/package=GerminaR) with:

``` r
install.packages("GerminaR")
```

And the development version from [GitHub](https://github.com/flavjack/GerminaR) with:

``` r
if (!require("remotes"))
  install.packages("remotes")
remotes::install_github("Flavjack/GerminaR")
```
## GerminaQuant app

```r
GerminaR::GerminaQuant()
```

If is the first time running the app you should install the app dependencies, including the following argument:

```r
GerminaR::GerminaQuant(dependencies = TRUE)
```
After install the package and the app dependencies you can access to the app through the Addins list in Rstudio, or in the following link in the internet <https://flavjack.shinyapps.io/germinaquant/>

## Citation

Lozano-Isla, Flavio; Benites-Alfaro, Omar Eduardo; Pompelli, Marcelo Francisco (2019). GerminaR: An R package for germination analysis with the interactive web application “GerminaQuant for R.” Ecological Research, 34(2), 339–346. <https://doi.org/10.1111/1440-1703.1275>