DESCRIPTION

Package: EpiTxDb
Type: Package
Title: Storing and accessing epitranscriptomic information using the AnnotationDbi interface
Version: 1.15.3
Date: 2024-03-24
Authors@R: person("Felix G.M.", 
                  "Ernst", 
                  email = "felix.gm.ernst@outlook.com", 
                  role = c("aut", "cre"),
                  comment = c(ORCID = "0000-0001-5064-0928"))
Description: 
    EpiTxDb facilitates the storage of epitranscriptomic information. More 
    specifically, it can keep track of modification identity, position, the
    enzyme for introducing it on the RNA, a specifier which determines the
    position on the RNA to be modified and the literature references each
    modification is associated with.
License: Artistic-2.0
Encoding: UTF-8
LazyData: false
biocViews:
    Software,
    Epitranscriptomics
Depends:
    R (>= 4.0),
    AnnotationDbi,
    Modstrings
Imports:
    methods,
    utils,
    httr,
    xml2,
    curl,
    rex,
    GenomicFeatures,
    txdbmaker,
    GenomicRanges,
    GenomeInfoDb,
    BiocGenerics,
    BiocFileCache,
    S4Vectors,
    IRanges,
    RSQLite,
    DBI,
    Biostrings,
    tRNAdbImport
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    testthat,
    httptest,
    AnnotationHub,
    ensembldb,
    ggplot2,
    EpiTxDb.Hs.hg38,
    BSgenome.Hsapiens.UCSC.hg38,
    BSgenome.Scerevisiae.UCSC.sacCer3,
    TxDb.Hsapiens.UCSC.hg38.knownGene
Collate: 
    'AllGenerics.R'
    'EpiTxDb-SELECT-helpers.R'
    'EpiTxDb-schema.R'
    'EpiTxDb.R'
    'EpiTxDb-class.R'
    'makeEpiTxDb.R'
    'makeEpiTxDbFromGRanges.R'
    'shiftGenomicToTranscript.R'
    'makeEpiTxDbFromRMBase.R'
    'makeEpiTxDbFromtRNAdb.R'
    'modifications.R'
    'modificationsBy.R'
    'ranges-helpers.R'
    'select-methods.R'
RoxygenNote: 7.3.1
BugReports: https://github.com/FelixErnst/EpiTxDb/issues
URL: https://github.com/FelixErnst/EpiTxDb
VignetteBuilder: knitr