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mnoergaardmnoergaard
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Update PET datasets from "unit" to "units" (bids-standard#269)
1 parent 5a8cd0e commit 094e5eb

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6 files changed

+54
-54
lines changed

6 files changed

+54
-54
lines changed

‎pet001/sub-01/ses-01/pet/sub-01_ses-01_pet.json

Lines changed: 9 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -3,20 +3,20 @@
33
"Manufacturer": "Siemens",
44
"ManufacturersModelName": "High-Resolution Research Tomograph (HRRT, CTI/Siemens)",
55
"BodyPart": "Brain",
6-
"Unit": "Bq/ml",
6+
"Units": "Bq/ml",
77
"TracerName": "CIMBI-36",
88
"TracerRadionuclide": "C11",
99
"TracerMolecularWeight": 380.28,
10-
"TracerMolecularWeightUnit": "g/mol",
10+
"TracerMolecularWeightUnits": "g/mol",
1111
"InjectedRadioactivity": 573,
12-
"InjectedRadioactivityUnit": "MBq",
12+
"InjectedRadioactivityUnits": "MBq",
1313
"InjectedMass": 0.62,
14-
"InjectedMassUnit": "ug",
14+
"InjectedMassUnits": "ug",
1515
"SpecificRadioactivity": 353.51,
16-
"SpecificRadioactivityUnit": "GBq/ug",
16+
"SpecificRadioactivityUnits": "GBq/ug",
1717
"ModeOfAdministration": "bolus",
1818
"MolarActivity": 1.62,
19-
"MolarActivityUnit": "nmol",
19+
"MolarActivityUnits": "nmol",
2020
"MolarActivityMeasTime": "12:59:00",
2121
"TimeZero": "13:04:42",
2222
"ScanStart": 0,
@@ -30,9 +30,9 @@
3030
"ImageVoxelSize": [1.2188,1.2188,1.2188],
3131
"ReconMethodName": "3D-OSEM-PSF",
3232
"ReconMethodParameterLabels": ["subsets","iterations"],
33-
"ReconMethodParameterUnit": ["none","none"],
33+
"ReconMethodParameterUnits": ["none","none"],
3434
"ReconMethodParameterValues": [16,10],
35-
"ReconFilterType": ["none"],
36-
"ReconFilterSize": [0],
35+
"ReconFilterType": "none",
36+
"ReconFilterSize": 0,
3737
"AttenuationCorrection": "[137Cs]transmission scan-based"
3838
}

‎pet002/sub-01/ses-01/pet/sub-01_ses-01_pet.json

Lines changed: 9 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -3,19 +3,19 @@
33
"Manufacturer": "Siemens",
44
"ManufacturersModelName": "High-Resolution Research Tomograph (HRRT, CTI/Siemens)",
55
"BodyPart": "Brain",
6-
"Unit": "Bq/mL",
6+
"Units": "Bq/mL",
77
"TracerName": "DASB",
88
"TracerRadionuclide": "C11",
99
"TracerMolecularWeight": 282.39,
10-
"TracerMolecularWeightUnit": "g/mol",
10+
"TracerMolecularWeightUnits": "g/mol",
1111
"InjectedRadioactivity": 598,
12-
"InjectedRadioactivityUnit": "MBq",
12+
"InjectedRadioactivityUnits": "MBq",
1313
"InjectedMass": 0.71,
14-
"InjectedMassUnit": "ug",
14+
"InjectedMassUnits": "ug",
1515
"SpecificRadioactivity": 842.25,
16-
"SpecificRadioactivityUnit": "MBq/ug",
16+
"SpecificRadioactivityUnits": "MBq/ug",
1717
"MolarActivity": 238.23,
18-
"MolarActivityUnit": "GBq/umol",
18+
"MolarActivityUnits": "GBq/umol",
1919
"TimeZero": "13:06:34",
2020
"ScanStart": 0,
2121
"InjectionStart": 0,
@@ -29,9 +29,9 @@
2929
"ImageVoxelSize": [1.2188,1.2188,1.2188],
3030
"ReconMethodName": "3D-OSEM-PSF",
3131
"ReconMethodParameterLabels": ["subsets","iterations"],
32-
"ReconMethodParameterUnit": ["none","none"],
32+
"ReconMethodParameterUnits": ["none","none"],
3333
"ReconMethodParameterValues": [16,10],
34-
"ReconFilterType": ["none"],
35-
"ReconFilterSize": [0],
34+
"ReconFilterType": "none",
35+
"ReconFilterSize": 0,
3636
"AttenuationCorrection": "[137Cs]transmission scan-based"
3737
}

‎pet003/sub-01/ses-01/pet/sub-01_ses-01_pet.json

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -2,20 +2,20 @@
22
"Manufacturer": "Siemens",
33
"ManufacturersModelName": "Siemens HR+",
44
"BodyPart": "Brain",
5-
"Unit": "Bq/mL",
5+
"Units": "Bq/mL",
66
"TracerName": "DASB",
77
"TracerRadionuclide": "C11",
88
"TracerMolecularWeight": 282.39,
9-
"TracerMolecularWeightUnit": "g/mol",
9+
"TracerMolecularWeightUnits": "g/mol",
1010
"TracerInjectionType": "bolus",
1111
"InjectedRadioactivity": 694.86,
12-
"InjectedRadioactivityUnit": "MBq",
12+
"InjectedRadioactivityUnits": "MBq",
1313
"InjectedMass": 3.57,
14-
"InjectedMassUnit": "ug",
14+
"InjectedMassUnits": "ug",
1515
"SpecificRadioactivity": 194.64,
16-
"SpecificRadioactivityUnit": "MBq/ug",
16+
"SpecificRadioactivityUnits": "MBq/ug",
1717
"MolarActivity": 55,
18-
"MolarActivityUnit": "MBq/nmol",
18+
"MolarActivityUnits": "MBq/nmol",
1919
"ModeOfAdministration": "bolus",
2020
"ScanStart": 0,
2121
"InjectionStart": 0,
@@ -28,7 +28,7 @@
2828
"ImageDecayCorrectionTime": 0,
2929
"ReconMethodName": "Vendor",
3030
"ReconMethodParameterLabels": ["Zoom factor"],
31-
"ReconMethodParameterUnit": ["none"],
31+
"ReconMethodParameterUnits": ["none"],
3232
"ReconMethodParameterValues": [4],
3333
"ReconFilterType": ["Shepp 0.5","All-pass 0.4"],
3434
"ReconFilterSize": [2.5, 2.0],

‎pet004/sub-01/pet/sub-01_pet.json

Lines changed: 11 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -2,30 +2,30 @@
22
"Manufacturer": "Siemens",
33
"ManufacturersModelName": "High-Resolution Research Tomograph (HRRT, CTI/Siemens)",
44
"BodyPart": "Brain",
5-
"Unit": "Bq/mL",
5+
"Units": "Bq/mL",
66
"TracerName": "CIMBI-36",
77
"TracerRadionuclide": "C11",
88
"TracerMolecularWeight": 380.28,
9-
"TracerMolecularWeightUnit": "g/mol",
9+
"TracerMolecularWeightUnits": "g/mol",
1010
"PharmaceuticalName": "Ketanserin",
1111
"PharmaceuticalDoseAmount": 5,
12-
"PharmaceuticalDoseAmountUnit": "mg/kg",
12+
"PharmaceuticalDoseAmountUnits": "mg/kg",
1313
"PharmaceuticalDoseRegimen": "single oral bolus",
1414
"PharmaceuticalDoseTime": 3642,
1515
"InjectedRadioactivity": 884,
16-
"InjectedRadioactivityUnit": "MBq",
16+
"InjectedRadioactivityUnits": "MBq",
1717
"InjectedMass": 2.52,
18-
"InjectedMassUnit": "ug",
18+
"InjectedMassUnits": "ug",
1919
"SpecificRadioactivity": 1.838,
20-
"SpecificRadioactivityUnit": "GBq/ug",
20+
"SpecificRadioactivityUnits": "GBq/ug",
2121
"ModeOfAdministration": "bolus-infusion",
2222
"MolarActivity": 133.35,
23-
"MolarActivityUnit": "GBq/umol",
23+
"MolarActivityUnits": "GBq/umol",
2424
"MolarActivityMeasTime": "15:12:07",
2525
"InfusionRadioactivity": 689.41,
2626
"InfusionStart": 113,
2727
"InfusionSpeed": 1.319,
28-
"InfusionSpeedUnit": "uL/s",
28+
"InfusionSpeedUnits": "uL/s",
2929
"InjectedVolume": 9.5,
3030
"TimeZero": "15:12:07",
3131
"ScanStart": 0,
@@ -37,9 +37,9 @@
3737
"ImageDecayCorrectionTime": 0,
3838
"ReconMethodName": "3D-OSEM-PSF",
3939
"ReconMethodParameterLabels": ["subsets","iterations"],
40-
"ReconMethodParameterUnit": ["none","none"],
40+
"ReconMethodParameterUnits": ["none","none"],
4141
"ReconMethodParameterValues": [16,10],
42-
"ReconFilterType": ["none"],
43-
"ReconFilterSize": [0],
42+
"ReconFilterType": "none",
43+
"ReconFilterSize": 0,
4444
"AttenuationCorrection": "[137Cs]transmission scan-based"
4545
}

‎pet005/sub-01/ses-baseline/pet/sub-01_ses-baseline_pet.json

Lines changed: 9 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -1,23 +1,23 @@
11
{
22
"Manufacturer": "Siemens",
33
"ManufacturersModelName": "Biograph_mMR",
4-
"Unit": "Bq/mL",
4+
"Units": "Bq/mL",
55
"TracerName": "AZ-10419369",
66
"TracerRadionuclide": "C11",
77
"InstitutionName": "Rigshospitalet",
88
"InstitutionAddress": "Blegdamsvej_9_Copenhagen_District_DK_2100",
99
"BodyPart": "Brain",
1010
"InjectedRadioactivity": 462,
11-
"InjectedRadioactivityUnit": "MBq",
11+
"InjectedRadioactivityUnits": "MBq",
1212
"InjectedMass": 1.023,
13-
"InjectedMassUnit": "ug",
13+
"InjectedMassUnits": "ug",
1414
"SpecificRadioactivity": 451.52,
15-
"SpecificRadioactivityUnit": "MBq/ug",
15+
"SpecificRadioactivityUnits": "MBq/ug",
1616
"ModeOfAdministration": "bolus",
1717
"InjectedMassPerWeight": 0.0121,
18-
"InjectedMassPerWeightUnit": "ug/kg",
18+
"InjectedMassPerWeightUnits": "ug/kg",
1919
"MolarActivity": 208.67,
20-
"MolarActivityUnit": "GBq/umol",
20+
"MolarActivityUnits": "GBq/umol",
2121
"TimeZero": "14:37:54",
2222
"ScanStart": 0,
2323
"InjectionStart": 0,
@@ -124,10 +124,10 @@
124124
"ImageDecayCorrectionTime": 0,
125125
"ReconMethodName": "OP-OSEM4i21s",
126126
"ReconMethodParameterLabels": ["subsets", "iterations"],
127-
"ReconMethodParameterUnit": ["none", "none"],
127+
"ReconMethodParameterUnits": ["none", "none"],
128128
"ReconMethodParameterValues": [21, 4],
129-
"ReconFilterType": ["GaussianXYZ"],
130-
"ReconFilterSize": [4],
129+
"ReconFilterType": "GaussianXYZ",
130+
"ReconFilterSize": 4,
131131
"AttenuationCorrection": "CT-based attenuation correction",
132132
"DecayCorrectionFactor": [
133133
1.00284,

‎pet005/sub-01/ses-intervention/pet/sub-01_ses-intervention_task-eyes_pet.json

Lines changed: 9 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -2,23 +2,23 @@
22
"Manufacturer": "Siemens",
33
"TaskName": "Eyes open/closed",
44
"ManufacturersModelName": "Biograph_mMR",
5-
"Unit": "Bq/mL",
5+
"Units": "Bq/mL",
66
"TracerName": "AZ-10419369",
77
"TracerRadionuclide": "C11",
88
"InstitutionName": "Rigshospitalet",
99
"InstitutionAddress": "Blegdamsvej_9_Copenhagen_District_DK_2100",
1010
"BodyPart": "Brain",
1111
"InjectedRadioactivity": 624.3,
12-
"InjectedRadioactivityUnit": "MBq",
12+
"InjectedRadioactivityUnits": "MBq",
1313
"InjectedMass": 1.59769,
14-
"InjectedMassUnit": "ug",
14+
"InjectedMassUnits": "ug",
1515
"SpecificRadioactivity": 390.75,
16-
"SpecificRadioactivityUnit": "MBq/ug",
16+
"SpecificRadioactivityUnits": "MBq/ug",
1717
"ModeOfAdministration": "bolus",
1818
"InjectedMassPerWeight": 0.0192,
19-
"InjectedMassPerWeightUnit": "ug/kg",
19+
"InjectedMassPerWeightUnits": "ug/kg",
2020
"MolarActivity": 180.61,
21-
"MolarActivityUnit": "GBq/umol",
21+
"MolarActivityUnits": "GBq/umol",
2222
"TimeZero": "15:22:20",
2323
"ScanStart": 0,
2424
"InjectionStart": 0,
@@ -125,10 +125,10 @@
125125
"ImageDecayCorrectionTime": 0,
126126
"ReconMethodName": "OP-OSEM4i21s",
127127
"ReconMethodParameterLabels": ["subsets", "iterations"],
128-
"ReconMethodParameterUnit": ["none", "none"],
128+
"ReconMethodParameterUnits": ["none", "none"],
129129
"ReconMethodParameterValues": [21, 4],
130-
"ReconFilterType": ["GaussianXYZ"],
131-
"ReconFilterSize": [4],
130+
"ReconFilterType": "GaussianXYZ",
131+
"ReconFilterSize": 4,
132132
"AttenuationCorrection": "CT-based attenuation correction",
133133
"DecayCorrectionFactor": [
134134
1.00227,

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