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nanometa_live
nanometa_live PublicA streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline …
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cansnper1.1
cansnper1.1 PublicCanSNPer1.1: A toolkit for SNP-typing using NGS data. Copyright (C) 2016 Adrian Lärkeryd Updates done by David Sundell VERSION 1.1.0 (Adjusted to python 3, python 2 support is depricated) This prog…
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RepGenR (Representative-Genome Repositories) clusters genome sequences based on average nucleotide identity to produce flexible databases
FOI-Bioinformatics/repgenr’s past year of commit activity - flexmetr Public
FlexMetR (Flexible Metadata Resources) lets you add metadata to accession numbers or custom identifiers.
FOI-Bioinformatics/flexmetr’s past year of commit activity - metaquest Public
MetaQuest is a robust and user-friendly command-line toolkit designed to simplify and streamline the analysis of metagenomic data. From summarizing the presence of specific genomes to visualizing complex datasets, MetaQuest offers an array of tools to help researchers uncover insights from their metagenomic datasets.
FOI-Bioinformatics/metaquest’s past year of commit activity - flextaxd Public
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
FOI-Bioinformatics/flextaxd’s past year of commit activity - baitUtils Public
baitUtils is a comprehensive toolkit for the analysis and visualization of bait sequences used in in-solution hybridization
FOI-Bioinformatics/baitUtils’s past year of commit activity - preprimer Public
Prepare primers from different formats, i.e. schemes for tiled sequencing from varvamp to artic format. Also prepares and aligns primers with mepcr or exonerate.
FOI-Bioinformatics/preprimer’s past year of commit activity - CanSNPer2-data Public
Repository for the CanSNP database contaning the source tree from CanSNPer version 2 and later
FOI-Bioinformatics/CanSNPer2-data’s past year of commit activity - nanometa_live Public
A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline functionality post-initialization.
FOI-Bioinformatics/nanometa_live’s past year of commit activity
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