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@EddyRivasLab

The Eddy/Rivas Laboratory

Computational genome sequence analysis, especially of RNA

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  1. hmmer hmmer Public

    HMMER: biological sequence analysis using profile HMMs

    C 396 89

  2. infernal infernal Public

    RNA secondary structure/sequence profiles for homology search and alignment

    C 125 29

  3. easel easel Public

    Sequence analysis library used by Eddy/Rivas lab code

    C 52 30

  4. R-scape R-scape Public

    RNA Structural Covariation Above Phylogenetic Expectation

    C 18 3

  5. ssu-align ssu-align Public

    Structural alignment of SSU rRNA sequences

    PostScript 6

  6. tornado tornado Public

    A general purpose parser to produce grammars of single-sequence RNA secondary structure

    C 4 3

Repositories

Showing 10 of 14 repositories
  • eddyrivaslab.github.io Public
    EddyRivasLab/eddyrivaslab.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 23, 2026
  • eddyrivaslab.github.io-src Public
    EddyRivasLab/eddyrivaslab.github.io-src’s past year of commit activity
    CSS 0 0 0 0 Updated Feb 23, 2026
  • infernal Public

    RNA secondary structure/sequence profiles for homology search and alignment

    EddyRivasLab/infernal’s past year of commit activity
    C 125 29 3 0 Updated Feb 16, 2026
  • hmmer Public

    HMMER: biological sequence analysis using profile HMMs

    EddyRivasLab/hmmer’s past year of commit activity
    C 396 89 18 3 Updated Feb 16, 2026
  • easel Public

    Sequence analysis library used by Eddy/Rivas lab code

    EddyRivasLab/easel’s past year of commit activity
    C 52 30 3 2 Updated Feb 16, 2026
  • R-scape Public

    RNA Structural Covariation Above Phylogenetic Expectation

    EddyRivasLab/R-scape’s past year of commit activity
    C 18 3 1 2 Updated Dec 12, 2025
  • tornado Public

    A general purpose parser to produce grammars of single-sequence RNA secondary structure

    EddyRivasLab/tornado’s past year of commit activity
    C 4 3 0 0 Updated Dec 11, 2025
  • R-scape-web Public

    RNA Structure-driven Covariation Above Phylogenetic Expectation (web application)

    EddyRivasLab/R-scape-web’s past year of commit activity
    JavaScript 3 1 0 0 Updated Oct 29, 2025
  • labbib Public

    Lab's BibTex bibliography, and tools

    EddyRivasLab/labbib’s past year of commit activity
    TeX 1 0 0 0 Updated Oct 10, 2025
  • infernal.org Public

    Infernal's web page

    EddyRivasLab/infernal.org’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 11, 2023
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