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GTDB won't stop running and produce results

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#628 In Ecogenomics/GTDBTk;

· lyisrae1 opened on Mar 28, 2025

ERROR: Controlled exit resulting from interrupt signal.

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#627 In Ecogenomics/GTDBTk;

· BigtigerLi opened on Mar 18, 2025

skani not in folder

Status: Open.

#625 In Ecogenomics/GTDBTk;

· lcamVz opened on Mar 4, 2025

pplacerException: an error was encountered while running pplacer.

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#620 In Ecogenomics/GTDBTk;

· luwenyi111 opened on Jan 13, 2025

classify_wf results, bin.bac120.summary.tsv

Status: Open.

#618 In Ecogenomics/GTDBTk;

· luwenyi111 opened on Dec 30, 2024

Denovo_wf or classify_wf for taxonomic annotation of MAGs

Status: Open.

#615 In Ecogenomics/GTDBTk;

· Christaline-George opened on Dec 12, 2024

Significant differences between gtdbtk de_novo_wf (GTDB-Tk v2.3.2) and gtdbtk classify_wf (GTDB-Tk v2.1.0)

Status: Open.

#613 In Ecogenomics/GTDBTk;

· 473021677 opened on Nov 26, 2024

ERROR: An error was encountered while running hmmsearch.

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#612 In Ecogenomics/GTDBTk;

· J-Weijie98 opened on Nov 18, 2024

GTDB for large number of genomes (1.3M)

Status: Open.

#611 In Ecogenomics/GTDBTk;

· intikhab opened on Nov 5, 2024

Add environment variable for mash database

Status: Open.

#607 In Ecogenomics/GTDBTk;

· fplazaonate opened on Oct 18, 2024

Skani external command error

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#606 In Ecogenomics/GTDBTk;

· magicprotoss opened on Oct 14, 2024

Troubleshooting GTDB-Tk Database Installation and Environment Configuration

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#596 In Ecogenomics/GTDBTk;

· soojunglee98 opened on Jul 16, 2024