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Commits on Apr 14, 2022

• fixed support for gzip input FASTA files

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Commits on Apr 10, 2022

• - accepted PRs allowing bins to be specified via an input table, fixing import error with prettytable, and enhancing identification of bins via their extension

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• Merge pull request #322 from jjacobson95/patch-1

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• Merge pull request #329 from alienzj/support_table_input

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• fix API useage

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• Support table as input for checkm bins

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Commits on Apr 9, 2022

• Allow CheckM data path to be set through the environmental variable CHECKM_DATA_PATH

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• added maxibor's PR to allow path to DATA_CONFIG file to be set

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Commits on Mar 2, 2022

• Merge pull request #326 from maxibor/master

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Commits on Mar 1, 2022

• change setRoot argument order

  maxibor

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• configFile can also be specified by user

  maxibor

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Commits on Jan 22, 2022

• Fix prettytable.

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Commits on May 11, 2021

• Merge branch 'master' of github.com:Ecogenomics/CheckM

  donovan-h-parks

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• Fix to coding density calculation which was off by 1 base per sequence.

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Commits on Aug 10, 2020

• Update README.md

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• Added customer_marker_sets directory and marker set for CPR (Patescibacteria) genomes by Adarsh Singh

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Commits on Jul 9, 2020

• Minor bug fixes to handle invalid GFF files produced by Prodigal, and compatibility with Matplotlib changes

  donovan-h-parks

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Commits on May 4, 2020

• Changed `normed` to `density` in Matplotlib hist plots.

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• Merge pull request #255 from bernt-matthias/topic/name_parsers

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Commits on Apr 18, 2020

• name all subparsers

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Commits on Dec 22, 2019

• Minor bug fixes to setting up reference data.

  donovan-h-parks

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Commits on Dec 4, 2019

• Updated version number.

  donovan-h-parks

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• Merge pull request #238 from sjaenick/master

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• unzip .egg during install

  sjaenick

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• python3 fixes

  sjaenick

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Commits on Dec 1, 2019

• Update README.md

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• Update README.md

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• Update README.md

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• Update README.md

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• Merge pull request #237 from Ecogenomics/python3_dev

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• Merge branch 'master' into python3_dev

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Commits on Nov 7, 2019

• Update setup.py

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• Update README.md

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• Update README.md

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• Update README.md

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