Failure to create lnd_mesh.nc file from global 0.01x0.01 deg SCRIP file #2479
Labels
priority: low
Background task that doesn't need to be done right away.
test: mksurfdata
Test mksurfdata_esmf before merging
Brief summary of bug
Failure to create lnd_mesh.nc file from global 0.01x0.01 deg SCRIP file
General bug information
CTSM version you are using: NA
Does this bug cause significantly incorrect results in the model's science? No
Details of bug
As part of the steps required to create a global 0.01x0.01 surface dataset, one step that fails on Derecho is:
/glade/u/apps/derecho/23.09/spack/opt/spack/esmf/8.6.0/cray-mpich/8.1.27/oneapi/2023.2.1/7haa/bin/ESMF_Scrip2Unstruct /glade/work/oleson/release-cesm2.2.0/components/clm/tools/mkmapgrids/SCRIPgrid_36000x18000pt_Global_nomask_c240418.nc lnd_mesh.nc 0
This fails immediately with "killed"
Tried:
qcmd -- /glade/u/apps/derecho/23.09/spack/opt/spack/esmf/8.6.0/cray-mpich/8.1.27/oneapi/2023.2.1/7haa/bin/ESMF_Scrip2Unstruct /glade/work/oleson/release-cesm2.2.0/components/clm/tools/mkmapgrids/SCRIPgrid_36000x18000pt_Global_nomask_c240418.nc lnd_mesh.nc 0
For reference, the qcmd specifics are: qsub -l select=1:ncpus=32:mem=55GB -A P93300041 -q develop@desched1 -l walltime=01:00:00
This fails with:
Segmentation fault (core dumped)
Tried:
qsub -l select=1:ncpus=1:mem=235GB -q develop -A P93300641 -l walltime=01:00:00 -- /glade/u/apps/derecho/23.09/spack/opt/spack/esmf/8.6.0/cray-mpich/8.1.27/oneapi/2023.2.1/7hhaa/bin/ESMF_Scrip2Unstruct /glade/work/oleson/release-cesm2.2.0/components/clm/tools/mkmapgrids/SCRIPgrid_36000x18000pt_Global_nomask_c240418.nc lnd_mesh.nc 0
This fails with:
/glade/u/apps/derecho/23.09/spack/opt/spack/esmf/8.6.0/cray-mpich/8.1.27/oneapi/2023.2.1/7haa/bin/ESMF_Scrip2Unstruct: error while loading shared libraries: libfabric.so.1: cannot open shared object file: No such file or directory
I've tried some other combinations of approaches on both Derecho and Casper and none have worked.
I'll note that the creation of a 0.05x0.05 deg global lnd_mesh file does work, and the rest of the process to create a 0.05x0.05 surface dataset does work.
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