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shell_commands
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shell_commands
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#!/bin/bash
./xmlchange CLM_USRDAT_NAME=PLUMBER2
./xmlchange DATM_MODE=1PT
# Set data forcing data to future scenario so will have data from 2018 to present-day
./xmlchange DATM_PRESAERO=SSP3-7.0
./xmlchange DATM_CO2_TSERIES=SSP3-7.0
./xmlchange DATM_PRESNDEP=SSP3-7.0
# Explicitly set the MPI library to mpi-serial so won't have the build/run complexity of a full MPI library
./xmlchange MPILIB=mpi-serial
# Explicitly set PIO Type to NETCDF since this is a single processor case (should already be set this way)
./xmlchange PIO_TYPENAME=netcdf
#
compset=`./xmlquery COMPSET --value`
CLM_USRDAT_NAME=`./xmlquery CLM_USRDAT_NAME --value`
TEST=`./xmlquery TEST --value`
# For a transient case run the whole length and don't cycle
if [[ $compset =~ ^HIST ]]; then
# Number of months that can be run for the full transient case
if [[ $TEST != "TRUE" ]]; then
./xmlchange STOP_OPTION="nyears"
fi
# TODO, makde this accurate for plumber2
./xmlchange CLM_NML_USE_CASE="2018-PD_transient"
# TODO, modify for postAD runs in tower script? Remove from usermods?
./xmlchange CLM_FORCE_COLDSTART=off
./xmlchange CALENDAR=GREGORIAN
echo "! this allows for large h1 data files, regardless or run length " >> user_nl_clm
echo "hist_nhtfrq = 0,1" >> user_nl_clm
echo "hist_mfilt = 1,438000" >> user_nl_clm
echo " " >> user_nl_clm
echo "CLM_USRDAT.PLUMBER2:taxmode=extend" >> user_nl_datm_streams
echo "CLM_USRDAT.PLUMBER2:dtlimit=1e30" >> user_nl_datm_streams
else
# TODO, set this for spinup in BGC and SP cases
./xmlchange STOP_OPTION="nyears"
./xmlchange STOP_N=5
./xmlchange CLM_NML_USE_CASE="2000_control"
./xmlchange CLM_FORCE_COLDSTART=on
./xmlchange CALENDAR=NO_LEAP
echo "CLM_USRDAT.PLUMBER2:taxmode=cycle" >> user_nl_datm_streams
echo "CLM_USRDAT.PLUMBER2:dtlimit=30" >> user_nl_datm_streams
fi
# If needed for SP simulations: & set history file variables
if [[ $compset =~ .*CLM[0-9]+%[^_]*SP.* ]]; then
echo "! using LAI streams for SP cases" >> user_nl_clm
echo "use_lai_streams = .true." >> user_nl_clm
echo "lai_mapalgo = 'nn'" >> user_nl_clm
echo "stream_meshfile_lai='none'" >> user_nl_clm
if [[ $TEST != "TRUE" ]]; then
./xmlchange STOP_OPTION=nyears
fi
echo "! h1 output stream for SP case" >> user_nl_clm
if [[ $compset =~ ^HIST ]]; then
echo "lai_dtlimit=1e30" >> user_nl_clm
echo "" >> user_nl_clm
echo "! h1 output stream for transient SP case" >> user_nl_clm
echo "hist_fincl2 = 'FSA','FIRA','EFLX_LH_TOT','FSH','FGR12','FGR','TSKIN','FSR','FSDS',
'SNOFSRVD','SNOFSRND','SNOFSRVI','SNOFSRNI','FSNO','TSOI','SNO_T','RAIN','SNOW',
'QVEGT','QVEGE','QSOIL','QRUNOFF','QOVER','QH2OSFC','QDRAI','QDRAI_PERCH',
'SNO_EXISTENCE','QSNOMELT','H2OCAN','H2OSNO','SNOCAN','SOILICE','SOILLIQ',
'SOILWATER_10CM','TWS','SNOWLIQ','SNOWDP','RH2M','TSA','FLDS','Q2M','PBOT','TLAI',
'WIND','FIRE','FCTR','FCEV','FGEV','FSM','COSZEN','H2OSOI','BTRANMN','TV','RSSUN',
'RSSHA','FSH_G','RHAF','RH_LEAF','RH','T10','TG','SABG','SABV','FPSN','TBOT','TAUX',
'TAUY','QSNOEVAP','QFLX_SOLIDEVAP_FROM_TOP_LAYER','QFLX_SNOW_DRAIN','H2OSFC','FPSN'" >> user_nl_clm
else
echo "lai_dtlimit=30." >> user_nl_clm
echo "" >> user_nl_clm
fi
echo " " >> user_nl_clm
else # for BGC cases
if [[ $compset =~ ^HIST ]]; then
echo "! h1 output stream for transient BGC case" >> user_nl_clm
echo "hist_fincl2 = 'AR','ELAI','FCEV','FCTR','FGEV','FIRA','FSA','FSH','GPP','H2OSOI',
'HR','SNOW_DEPTH','TBOT','TSOI','SOILC_vr','FV','NET_NMIN_vr','EFLX_LH_TOT',
'FGR12','FGR','TSKIN','FSR','FSDS','SNOFSRVD','SNOFSRND','SNOFSRVI','SNOFSRNI',
'FSNO','SNO_T','RAIN','SNOW','QVEGT','QVEGE','QSOIL','QRUNOFF','QOVER','QH2OSFC',
'QDRAI','QDRAI_PERCH','SNO_EXISTENCE','QSNOMELT','H2OCAN','H2OSNO','SNOCAN','SOILICE',
'SOILLIQ','SOILWATER_10CM','TWS','SNOWLIQ','SNOWDP','RH2M','TSA','FLDS','Q2M','PBOT',
'TLAI','WIND','FIRE','FSM','COSZEN','BTRANMN','TV','RSSUN','RSSHA','FSH_G','RHAF',
'RH_LEAF','RH','T10','TG','SABG','SABV','TBOT','TAUX','TAUY','QSNOEVAP','H2OSFC'" >> user_nl_clm
echo "" >> user_nl_clm
fi
fi