Merge master into feature

Author: kheal

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 3.3.0
+current_version = 3.4.0
 commit = False
 tag = False
 

README.md

@@ -49,7 +49,7 @@ CoreMS aims to provide
 
 ## Current Version
 
- `3.3.0`
+ `3.4.0`
 
 ***
 
@@ -336,11 +336,11 @@ UML (unified modeling language) diagrams for Direct Infusion FT-MS and GC-MS cla
 
 If you use CoreMS in your work, please use the following citation:
 
-Version [3.3.0 Release on GitHub](https://github.com/EMSL-Computing/CoreMS/releases/tag/v3.3.0), archived on Zenodo:  
+Version [3.4.0 Release on GitHub](https://github.com/EMSL-Computing/CoreMS/releases/tag/v3.4.0), archived on Zenodo:  
 
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.14009575.svg)](https://doi.org/10.5281/zenodo.14009575)
 
-Yuri E. Corilo, William R. Kew, Lee Ann McCue, Katherine R . Heal, James C. Carr (2024, October 29). EMSL-Computing/CoreMS: CoreMS 3.3.0 (Version v3.3.0), as developed on Github. Zenodo. http://doi.org/10.5281/zenodo.14009575
+Yuri E. Corilo, William R. Kew, Lee Ann McCue, Katherine R . Heal, James C. Carr (2024, October 29). EMSL-Computing/CoreMS: CoreMS 3.4.0 (Version v3.4.0), as developed on Github. Zenodo. http://doi.org/10.5281/zenodo.14009575
 
 ```
 

corems/__init__.py

@@ -1,5 +1,5 @@
 __author__ = "Yuri E. Corilo"
-__version__ = "3.3.0"
+__version__ = "3.4.0"
 import time
 import os
 import sys

docs/corems.html

@@ -150,7 +150,7 @@ <h1 class="modulename">
 
                         <label class="view-source-button" for="mod-constant-view-source"><span>View Source</span></label>
 
-                        <div class="pdoc-code codehilite"><pre><span></span><span id="L-1"><a href="#L-1"><span class="linenos">   1</span></a><span class="k">class</span> <span class="nc">Labels</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
+                        <div class="pdoc-code codehilite"><pre><span></span><span id="L-1"><a href="#L-1"><span class="linenos">   1</span></a><span class="k">class</span><span class="w"> </span><span class="nc">Labels</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
 </span><span id="L-2"><a href="#L-2"><span class="linenos">   2</span></a><span class="w">    </span><span class="sd">&quot;&quot;&quot;Class for Labels used in CoreMS</span>
 </span><span id="L-3"><a href="#L-3"><span class="linenos">   3</span></a>
 </span><span id="L-4"><a href="#L-4"><span class="linenos">   4</span></a><span class="sd">    These labels are used to define:</span>
@@ -195,7 +195,7 @@ <h1 class="modulename">
 </span><span id="L-43"><a href="#L-43"><span class="linenos">  43</span></a>    <span class="p">}</span>
 </span><span id="L-44"><a href="#L-44"><span class="linenos">  44</span></a>
 </span><span id="L-45"><a href="#L-45"><span class="linenos">  45</span></a>
-</span><span id="L-46"><a href="#L-46"><span class="linenos">  46</span></a><span class="k">class</span> <span class="nc">Atoms</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
+</span><span id="L-46"><a href="#L-46"><span class="linenos">  46</span></a><span class="k">class</span><span class="w"> </span><span class="nc">Atoms</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
 </span><span id="L-47"><a href="#L-47"><span class="linenos">  47</span></a><span class="w">    </span><span class="sd">&quot;&quot;&quot;Class for Atoms in CoreMS</span>
 </span><span id="L-48"><a href="#L-48"><span class="linenos">  48</span></a>
 </span><span id="L-49"><a href="#L-49"><span class="linenos">  49</span></a><span class="sd">    This class includes key properties of atoms (and the electron) and isotopes, including their exact masses, relative abundances, and covalences.</span>
@@ -1448,7 +1448,7 @@ <h1 class="modulename">
 
     </div>
     <a class="headerlink" href="#Labels"></a>
-            <div class="pdoc-code codehilite"><pre><span></span><span id="Labels-2"><a href="#Labels-2"><span class="linenos"> 2</span></a><span class="k">class</span> <span class="nc">Labels</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Labels-2"><a href="#Labels-2"><span class="linenos"> 2</span></a><span class="k">class</span><span class="w"> </span><span class="nc">Labels</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
 </span><span id="Labels-3"><a href="#Labels-3"><span class="linenos"> 3</span></a><span class="w">    </span><span class="sd">&quot;&quot;&quot;Class for Labels used in CoreMS</span>
 </span><span id="Labels-4"><a href="#Labels-4"><span class="linenos"> 4</span></a>
 </span><span id="Labels-5"><a href="#Labels-5"><span class="linenos"> 5</span></a><span class="sd">    These labels are used to define:</span>
@@ -1795,7 +1795,7 @@ <h1 class="modulename">
 
     </div>
     <a class="headerlink" href="#Atoms"></a>
-            <div class="pdoc-code codehilite"><pre><span></span><span id="Atoms-47"><a href="#Atoms-47"><span class="linenos">  47</span></a><span class="k">class</span> <span class="nc">Atoms</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
+            <div class="pdoc-code codehilite"><pre><span></span><span id="Atoms-47"><a href="#Atoms-47"><span class="linenos">  47</span></a><span class="k">class</span><span class="w"> </span><span class="nc">Atoms</span><span class="p">:</span>  <span class="c1"># pragma: no cover</span>
 </span><span id="Atoms-48"><a href="#Atoms-48"><span class="linenos">  48</span></a><span class="w">    </span><span class="sd">&quot;&quot;&quot;Class for Atoms in CoreMS</span>
 </span><span id="Atoms-49"><a href="#Atoms-49"><span class="linenos">  49</span></a>
 </span><span id="Atoms-50"><a href="#Atoms-50"><span class="linenos">  50</span></a><span class="sd">    This class includes key properties of atoms (and the electron) and isotopes, including their exact masses, relative abundances, and covalences.</span>