From 5981f815cb434e741ee338a99f90a12c420d3954 Mon Sep 17 00:00:00 2001 From: psomhorst Date: Tue, 4 Jun 2024 15:33:35 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20EIT-ALIV?= =?UTF-8?q?E/eitprocessing@3ee0fda887e3e384d92310924397c93d90385adc=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .../eitprocessing/datahandling/loading.html | 8 ++--- .../datahandling/loading/draeger.html | 32 ++++++++--------- .../datahandling/loading/sentec.html | 14 ++++---- .../datahandling/loading/timpel.html | 34 +++++++++---------- 4 files changed, 44 insertions(+), 44 deletions(-) diff --git a/_modules/eitprocessing/datahandling/loading.html b/_modules/eitprocessing/datahandling/loading.html index 8f4246d15..51acae504 100644 --- a/_modules/eitprocessing/datahandling/loading.html +++ b/_modules/eitprocessing/datahandling/loading.html @@ -119,10 +119,10 @@

Source code for eitprocessing.datahandling.loading

max_frames=max_frames, ) - eit_datasets.append(loaded_data["eit_collection"]) - continuous_datasets.append(loaded_data["continuous_collection"]) - sparse_datasets.append(loaded_data["sparse_collection"]) - interval_datasets.append(loaded_data["interval_collection"]) + eit_datasets.append(loaded_data["eitdata_collection"]) + continuous_datasets.append(loaded_data["continuousdata_collection"]) + sparse_datasets.append(loaded_data["sparsedata_collection"]) + interval_datasets.append(loaded_data["intervaldata_collection"]) return Sequence( label=label, diff --git a/_modules/eitprocessing/datahandling/loading/draeger.html b/_modules/eitprocessing/datahandling/loading/draeger.html index f2974767d..346431057 100644 --- a/_modules/eitprocessing/datahandling/loading/draeger.html +++ b/_modules/eitprocessing/datahandling/loading/draeger.html @@ -148,17 +148,17 @@

Source code for eitprocessing.datahandling.loading.draeger

label="raw", pixel_impedance=pixel_impedance, ) - eit_collection = DataCollection(EITData, raw=eit_data) + eitdata_collection = DataCollection(EITData, raw=eit_data) ( - continuous_collection, - sparse_collection, + continuousdata_collection, + sparsedata_collection, ) = _convert_medibus_data(medibus_data, time) - interval_collection = DataCollection(IntervalData) + intervaldata_collection = DataCollection(IntervalData) # TODO: move some medibus data to sparse / interval # TODO: move phases and events to sparse / interval - continuous_collection.add( + continuousdata_collection.add( ContinuousData( label="global_impedance_(raw)", name="Global impedance (raw)", @@ -169,7 +169,7 @@

Source code for eitprocessing.datahandling.loading.draeger

values=eit_data.calculate_global_impedance(), ), ) - sparse_collection.add( + sparsedata_collection.add( SparseData( label="minvalues_(draeger)", name="Minimum values detected by Draeger device.", @@ -179,7 +179,7 @@

Source code for eitprocessing.datahandling.loading.draeger

time=np.array([t for t, d in phases if d == -1]), ), ) - sparse_collection.add( + sparsedata_collection.add( SparseData( label="maxvalues_(draeger)", name="Maximum values detected by Draeger device.", @@ -195,7 +195,7 @@

Source code for eitprocessing.datahandling.loading.draeger

events = list(events_) else: time, events = np.array([]), [] - sparse_collection.add( + sparsedata_collection.add( SparseData( label="events_(draeger)", name="Events loaded from Draeger data", @@ -208,10 +208,10 @@

Source code for eitprocessing.datahandling.loading.draeger

) return { - "eit_collection": eit_collection, - "continuous_collection": continuous_collection, - "sparse_collection": sparse_collection, - "interval_collection": interval_collection, + "eitdata_collection": eitdata_collection, + "continuousdata_collection": continuousdata_collection, + "sparsedata_collection": sparsedata_collection, + "intervaldata_collection": intervaldata_collection, }
@@ -222,8 +222,8 @@

Source code for eitprocessing.datahandling.loading.draeger

medibus_data: NDArray, time: NDArray, ) -> tuple[DataCollection, DataCollection]: - continuous_collection = DataCollection(ContinuousData) - sparse_collection = DataCollection(SparseData) + continuousdata_collection = DataCollection(ContinuousData) + sparsedata_collection = DataCollection(SparseData) for field_info, data in zip(_medibus_fields, medibus_data, strict=True): if field_info.continuous: @@ -237,13 +237,13 @@

Source code for eitprocessing.datahandling.loading.draeger

category=field_info.signal_name, ) continuous_data.lock() - continuous_collection.add(continuous_data) + continuousdata_collection.add(continuous_data) else: # TODO parse sparse data ... - return continuous_collection, sparse_collection
+ return continuousdata_collection, sparsedata_collection
diff --git a/_modules/eitprocessing/datahandling/loading/sentec.html b/_modules/eitprocessing/datahandling/loading/sentec.html index 405a60679..f6bec798c 100644 --- a/_modules/eitprocessing/datahandling/loading/sentec.html +++ b/_modules/eitprocessing/datahandling/loading/sentec.html @@ -73,7 +73,7 @@

Source code for eitprocessing.datahandling.loading.sentec

[docs] -def load_from_single_path( # noqa: C901, PLR0912 +def load_from_single_path( # noqa: C901 path: Path, framerate: float | None = 50.2, first_frame: int = 0, @@ -156,8 +156,8 @@

Source code for eitprocessing.datahandling.loading.sentec

if not framerate: framerate = SENTEC_FRAMERATE - eit_collection = DataCollection(EITData) - eit_collection.add( + eitdata_collection = DataCollection(EITData) + eitdata_collection.add( EITData( vendor=Vendor.SENTEC, path=path, @@ -170,10 +170,10 @@

Source code for eitprocessing.datahandling.loading.sentec

) return { - "eit_collection": eit_collection, - "continuous_collection": DataCollection(ContinuousData), - "sparse_collection": DataCollection(SparseData), - "interval_collection": DataCollection(IntervalData), + "eitdata_collection": eitdata_collection, + "continuousdata_collection": DataCollection(ContinuousData), + "sparsedata_collection": DataCollection(SparseData), + "intervaldata_collection": DataCollection(IntervalData), }
diff --git a/_modules/eitprocessing/datahandling/loading/timpel.html b/_modules/eitprocessing/datahandling/loading/timpel.html index 1a859e0a7..79fc7f5f5 100644 --- a/_modules/eitprocessing/datahandling/loading/timpel.html +++ b/_modules/eitprocessing/datahandling/loading/timpel.html @@ -151,13 +151,13 @@

Source code for eitprocessing.datahandling.loading.timpel

framerate=framerate, pixel_impedance=pixel_impedance, ) - eit_collection = DataCollection(EITData, raw=eit_data) + eitdata_collection = DataCollection(EITData, raw=eit_data) # extract waveform data # TODO: properly export waveform data - continuous_collection = DataCollection(ContinuousData) - continuous_collection.add( + continuousdata_collection = DataCollection(ContinuousData) + continuousdata_collection.add( ContinuousData( "global_impedance_(raw)", "Global impedance", @@ -168,7 +168,7 @@

Source code for eitprocessing.datahandling.loading.timpel

values=eit_data.calculate_global_impedance(), ), ) - continuous_collection.add( + continuousdata_collection.add( ContinuousData( label="airway_pressure_(timpel)", name="Airway pressure", @@ -180,7 +180,7 @@

Source code for eitprocessing.datahandling.loading.timpel

), ) - continuous_collection.add( + continuousdata_collection.add( ContinuousData( label="flow_(timpel)", name="Flow", @@ -192,7 +192,7 @@

Source code for eitprocessing.datahandling.loading.timpel

), ) - continuous_collection.add( + continuousdata_collection.add( ContinuousData( label="volume_(timpel)", name="Volume", @@ -205,10 +205,10 @@

Source code for eitprocessing.datahandling.loading.timpel

) # extract sparse data - sparse_collection = DataCollection(SparseData) + sparsedata_collection = DataCollection(SparseData) min_indices = np.nonzero(data[:, 1027] == 1)[0] - sparse_collection.add( + sparsedata_collection.add( SparseData( label="minvalues_(timpel)", name="Minimum values detected by Timpel device.", @@ -220,7 +220,7 @@

Source code for eitprocessing.datahandling.loading.timpel

) max_indices = np.nonzero(data[:, 1028] == 1)[0] - sparse_collection.add( + sparsedata_collection.add( SparseData( label="maxvalues_(timpel)", name="Maximum values detected by Timpel device.", @@ -231,11 +231,11 @@

Source code for eitprocessing.datahandling.loading.timpel

), ) - gi = continuous_collection["global_impedance_(raw)"].values + gi = continuousdata_collection["global_impedance_(raw)"].values time_ranges, breaths = _make_breaths(time, min_indices, max_indices, gi) - interval_collection = DataCollection(IntervalData) - interval_collection.add( + intervaldata_collection = DataCollection(IntervalData) + intervaldata_collection.add( IntervalData( label="breaths_(timpel)", name="Breaths (Timpel)", @@ -248,7 +248,7 @@

Source code for eitprocessing.datahandling.loading.timpel

) qrs_indices = np.nonzero(data[:, 1029] == 1)[0] - sparse_collection.add( + sparsedata_collection.add( SparseData( label="qrscomplexes_(timpel)", name="QRS complexes detected by Timpel device", @@ -260,10 +260,10 @@

Source code for eitprocessing.datahandling.loading.timpel

) return { - "eit_collection": eit_collection, - "continuous_collection": continuous_collection, - "sparse_collection": sparse_collection, - "interval_collection": interval_collection, + "eitdata_collection": eitdata_collection, + "continuousdata_collection": continuousdata_collection, + "sparsedata_collection": sparsedata_collection, + "intervaldata_collection": intervaldata_collection, }