diff --git a/_modules/eitprocessing.html b/_modules/eitprocessing.html index df96bb88f..ea1a8742a 100644 --- a/_modules/eitprocessing.html +++ b/_modules/eitprocessing.html @@ -37,7 +37,7 @@

Navigation

Source code for eitprocessing

 

 [docs]
-__version__ = "1.2.1"

+__version__ = "1.3.0"
diff --git a/_modules/eitprocessing/datahandling/continuousdata.html b/_modules/eitprocessing/datahandling/continuousdata.html index aee556780..f3496543a 100644 --- a/_modules/eitprocessing/datahandling/continuousdata.html +++ b/_modules/eitprocessing/datahandling/continuousdata.html @@ -39,6 +39,7 @@

Navigation

Source code for eitprocessing.datahandling.continuousdata

 from __future__ import annotations
 
+import warnings
 from dataclasses import dataclass, field
 from typing import TYPE_CHECKING, TypeVar
 
@@ -116,13 +117,24 @@ 
Source code for eitprocessing.datahandling.continuousdata
[docs]
     values: np.ndarray = field(kw_only=True, repr=False)

 
+

+[docs]
+    sample_frequency: float | None = field(kw_only=True, repr=False, metadata={"check_equivalence": True}, default=None)

+
 
 

 [docs]
     def __post_init__(self) -> None:
         if self.loaded:
             self.lock()
-        self.lock("time")

+        self.lock("time")
+
+        if self.sample_frequency is None:
+            msg = (
+                "`sample_frequency` is set to `None`. This will not be supported in future versions. "
+                "Provide a sample frequency when creating a ContinuousData object."
+            )
+            warnings.warn(msg, DeprecationWarning)
@@ -168,6 +180,7 @@

Source code for eitprocessing.datahandling.continuousdata

# make a copy if they want to edit the data directly time=np.copy(self.time), values=np.copy(self.values), + sample_frequency=self.sample_frequency, ) obj.unlock() return obj
@@ -200,6 +213,7 @@

Source code for eitprocessing.datahandling.continuousdata

time=np.concatenate((self.time, other.time)), values=np.concatenate((self.values, other.values)), derived_from=[*self.derived_from, *other.derived_from, self, other], + sample_frequency=self.sample_frequency, )
@@ -348,6 +362,7 @@

Source code for eitprocessing.datahandling.continuousdata

derived_from=[*self.derived_from, self], time=time, values=values, + sample_frequency=self.sample_frequency, )
diff --git a/_modules/eitprocessing/datahandling/eitdata.html b/_modules/eitprocessing/datahandling/eitdata.html index f54252e67..76bacb97f 100644 --- a/_modules/eitprocessing/datahandling/eitdata.html +++ b/_modules/eitprocessing/datahandling/eitdata.html @@ -39,6 +39,7 @@

Navigation

Source code for eitprocessing.datahandling.eitdata

 from __future__ import annotations
 
+import warnings
 from dataclasses import dataclass, field
 from enum import auto
 from pathlib import Path
@@ -73,7 +74,7 @@ 
Source code for eitprocessing.datahandling.eitdata
        path: The path of list of paths of the source from which data was derived.
         nframes: Number of frames.
         time: The time of each frame (since start measurement).
-        sample_frequency: The (average) frequency at which the frames are collection, in Hz.
+        sample_frequency: The (average) frequency at which the frames are collected, in Hz.
         vendor: The vendor of the device the data was collected with.
         label: Computer readable label identifying this dataset.
         name: Human readable name for the data.
@@ -126,6 +127,18 @@ 
Source code for eitprocessing.datahandling.eitdata
self.name = self.name or self.label

 
 
+    @property
+

+[docs]
+    def framerate(self) -> float:
+        """Deprecated alias to `sample_frequency`."""
+        warnings.warn(
+            "The `framerate` attribute has been deprecated. Use `sample_frequency` instead.",
+            DeprecationWarning,
+        )
+        return self.sample_frequency

+
+
     @staticmethod
 

 [docs]
diff --git a/_modules/eitprocessing/datahandling/loading/draeger.html b/_modules/eitprocessing/datahandling/loading/draeger.html
index 5634de355..bc6f33f6d 100644
--- a/_modules/eitprocessing/datahandling/loading/draeger.html
+++ b/_modules/eitprocessing/datahandling/loading/draeger.html
@@ -155,7 +155,7 @@ 
Source code for eitprocessing.datahandling.loading.draeger
(
         continuousdata_collection,
         sparsedata_collection,
-    ) = _convert_medibus_data(medibus_data, time)
+    ) = _convert_medibus_data(medibus_data, time, sample_frequency)
     intervaldata_collection = DataCollection(IntervalData)
     # TODO: move some medibus data to sparse / interval
     # TODO: move phases and events to sparse / interval
@@ -169,6 +169,7 @@ 
Source code for eitprocessing.datahandling.loading.draeger
derived_from=[eit_data],
             time=eit_data.time,
             values=eit_data.calculate_global_impedance(),
+            sample_frequency=sample_frequency,
         ),
     )
     sparsedata_collection.add(
@@ -223,6 +224,7 @@ 
Source code for eitprocessing.datahandling.loading.draeger
def _convert_medibus_data(
     medibus_data: NDArray,
     time: NDArray,
+    sample_frequency: float,
 ) -> tuple[DataCollection, DataCollection]:
     continuousdata_collection = DataCollection(ContinuousData)
     sparsedata_collection = DataCollection(SparseData)
@@ -237,6 +239,7 @@ 
Source code for eitprocessing.datahandling.loading.draeger
time=time,
                 values=data,
                 category=field_info.signal_name,
+                sample_frequency=sample_frequency,
             )
             continuous_data.lock()
             continuousdata_collection.add(continuous_data)
diff --git a/_modules/eitprocessing/datahandling/loading/timpel.html b/_modules/eitprocessing/datahandling/loading/timpel.html
index c77e56545..bc696f3e1 100644
--- a/_modules/eitprocessing/datahandling/loading/timpel.html
+++ b/_modules/eitprocessing/datahandling/loading/timpel.html
@@ -168,6 +168,7 @@ 
Source code for eitprocessing.datahandling.loading.timpel
"Global impedance calculated from raw EIT data",
             time=time,
             values=eit_data.calculate_global_impedance(),
+            sample_frequency=sample_frequency,
         ),
     )
     continuousdata_collection.add(
@@ -179,6 +180,7 @@ 
Source code for eitprocessing.datahandling.loading.timpel
description="Airway pressure measured by Timpel device",
             time=time,
             values=data[:, 1024],
+            sample_frequency=sample_frequency,
         ),
     )
 
@@ -191,6 +193,7 @@ 
Source code for eitprocessing.datahandling.loading.timpel
description="Flow measures by Timpel device",
             time=time,
             values=data[:, 1025],
+            sample_frequency=sample_frequency,
         ),
     )
 
@@ -203,6 +206,7 @@ 
Source code for eitprocessing.datahandling.loading.timpel
description="Volume measured by Timpel device",
             time=time,
             values=data[:, 1026],
+            sample_frequency=sample_frequency,
         ),
     )
 
diff --git a/_sources/autoapi/eitprocessing/datahandling/continuousdata/index.rst.txt b/_sources/autoapi/eitprocessing/datahandling/continuousdata/index.rst.txt
index 18db422be..a2b08fc11 100644
--- a/_sources/autoapi/eitprocessing/datahandling/continuousdata/index.rst.txt
+++ b/_sources/autoapi/eitprocessing/datahandling/continuousdata/index.rst.txt
@@ -83,6 +83,10 @@ Module Contents
       :type:  numpy.ndarray
 
 
+   .. py:attribute:: sample_frequency
+      :type:  float | None
+
+
    .. py:method:: __post_init__() -> None
 
 
diff --git a/_sources/autoapi/eitprocessing/datahandling/eitdata/index.rst.txt b/_sources/autoapi/eitprocessing/datahandling/eitdata/index.rst.txt
index 4ce90dbba..2aca655d9 100644
--- a/_sources/autoapi/eitprocessing/datahandling/eitdata/index.rst.txt
+++ b/_sources/autoapi/eitprocessing/datahandling/eitdata/index.rst.txt
@@ -42,7 +42,7 @@ Module Contents
    :param path: The path of list of paths of the source from which data was derived.
    :param nframes: Number of frames.
    :param time: The time of each frame (since start measurement).
-   :param sample_frequency: The (average) frequency at which the frames are collection, in Hz.
+   :param sample_frequency: The (average) frequency at which the frames are collected, in Hz.
    :param vendor: The vendor of the device the data was collected with.
    :param label: Computer readable label identifying this dataset.
    :param name: Human readable name for the data.
@@ -84,6 +84,12 @@ Module Contents
    .. py:method:: __post_init__()
 
 
+   .. py:property:: framerate
+      :type: float
+
+      Deprecated alias to `sample_frequency`.
+
+
    .. py:method:: ensure_path_list(path: str | pathlib.Path | list[str | pathlib.Path]) -> list[pathlib.Path]
       :staticmethod:
 
diff --git a/_sources/autoapi/eitprocessing/datahandling/loading/draeger/index.rst.txt b/_sources/autoapi/eitprocessing/datahandling/loading/draeger/index.rst.txt
index 60caf9627..d7232c189 100644
--- a/_sources/autoapi/eitprocessing/datahandling/loading/draeger/index.rst.txt
+++ b/_sources/autoapi/eitprocessing/datahandling/loading/draeger/index.rst.txt
@@ -51,7 +51,7 @@ Module Contents
    Load Dräger EIT data from path.
 
 
-.. py:function:: _convert_medibus_data(medibus_data: numpy.typing.NDArray, time: numpy.typing.NDArray) -> tuple[eitprocessing.datahandling.datacollection.DataCollection, eitprocessing.datahandling.datacollection.DataCollection]
+.. py:function:: _convert_medibus_data(medibus_data: numpy.typing.NDArray, time: numpy.typing.NDArray, sample_frequency: float) -> tuple[eitprocessing.datahandling.datacollection.DataCollection, eitprocessing.datahandling.datacollection.DataCollection]
 
 .. py:function:: _read_frame(reader: eitprocessing.datahandling.loading.binreader.BinReader, index: int, time: numpy.typing.NDArray, pixel_impedance: numpy.typing.NDArray, medibus_data: numpy.typing.NDArray, events: list, phases: list, previous_marker: int | None) -> int
 
diff --git a/_sources/autoapi/eitprocessing/datahandling/loading/index.rst.txt b/_sources/autoapi/eitprocessing/datahandling/loading/index.rst.txt
index f33e0b0e0..d5597cd3e 100644
--- a/_sources/autoapi/eitprocessing/datahandling/loading/index.rst.txt
+++ b/_sources/autoapi/eitprocessing/datahandling/loading/index.rst.txt
@@ -136,7 +136,7 @@ Package Contents
    :param path: The path of list of paths of the source from which data was derived.
    :param nframes: Number of frames.
    :param time: The time of each frame (since start measurement).
-   :param sample_frequency: The (average) frequency at which the frames are collection, in Hz.
+   :param sample_frequency: The (average) frequency at which the frames are collected, in Hz.
    :param vendor: The vendor of the device the data was collected with.
    :param label: Computer readable label identifying this dataset.
    :param name: Human readable name for the data.
@@ -178,6 +178,12 @@ Package Contents
    .. py:method:: __post_init__()
 
 
+   .. py:property:: framerate
+      :type: float
+
+      Deprecated alias to `sample_frequency`.
+
+
    .. py:method:: ensure_path_list(path: str | pathlib.Path | list[str | pathlib.Path]) -> list[pathlib.Path]
       :staticmethod:
 
diff --git a/_sources/autoapi/eitprocessing/index.rst.txt b/_sources/autoapi/eitprocessing/index.rst.txt
index 197833f4f..6c86c8c40 100644
--- a/_sources/autoapi/eitprocessing/index.rst.txt
+++ b/_sources/autoapi/eitprocessing/index.rst.txt
@@ -38,6 +38,6 @@ Package Contents
 ----------------
 
 .. py:data:: __version__
-   :value: '1.2.1'
+   :value: '1.3.0'
 
 
diff --git a/autoapi/eitprocessing/datahandling/continuousdata/index.html b/autoapi/eitprocessing/datahandling/continuousdata/index.html
index 7e9540a40..5f1051054 100644
--- a/autoapi/eitprocessing/datahandling/continuousdata/index.html
+++ b/autoapi/eitprocessing/datahandling/continuousdata/index.html
@@ -142,6 +142,11 @@ 
Module Contentsvalues: numpy.ndarray[source]
 

 
+

+

+sample_frequency: float | None[source]

+

+
 

 

 __post_init__() → None[source]

@@ -310,6 +315,7 @@ 
Table of Contents

 
  • ContinuousData.derived_from
    • 
 
  • ContinuousData.time
    • 
 
  • ContinuousData.values
    • 
+
  • ContinuousData.sample_frequency
    • 
 
  • ContinuousData.__post_init__()
    • 
 
  • ContinuousData.__setattr__()
    • 
 
  • ContinuousData.copy()
    • 
diff --git a/autoapi/eitprocessing/datahandling/eitdata/index.html b/autoapi/eitprocessing/datahandling/eitdata/index.html
index 88a05b296..54ca178bd 100644
--- a/autoapi/eitprocessing/datahandling/eitdata/index.html
+++ b/autoapi/eitprocessing/datahandling/eitdata/index.html
@@ -92,7 +92,7 @@ 
    Module Contents__post_init__()[source]
 
    
 
+
    
+
    
+property framerate: float[source]
    
+
    Deprecated alias to sample_frequency.
    
+
    
+
 
    
 
    
 static ensure_path_list(path: str | pathlib.Path | list[str | pathlib.Path]) → list[pathlib.Path][source]
    
@@ -244,6 +250,7 @@ 
    Table of Contents
    
 
  • EITData.name
    • 
 
  • EITData.pixel_impedance
    • 
 
  • EITData.__post_init__()
    • 
+
  • EITData.framerate
    • 
 
  • EITData.ensure_path_list()
    • 
 
  • EITData.__add__()
    • 
 
  • EITData.concatenate()
    • 
diff --git a/autoapi/eitprocessing/datahandling/loading/draeger/index.html b/autoapi/eitprocessing/datahandling/loading/draeger/index.html
index 166d14be8..cfdd43b2c 100644
--- a/autoapi/eitprocessing/datahandling/loading/draeger/index.html
+++ b/autoapi/eitprocessing/datahandling/loading/draeger/index.html
@@ -118,7 +118,7 @@ 
    Module Contents
 
    
-eitprocessing.datahandling.loading.draeger._convert_medibus_data(medibus_data: numpy.typing.NDArray, time: numpy.typing.NDArray) → tuple[eitprocessing.datahandling.datacollection.DataCollection, eitprocessing.datahandling.datacollection.DataCollection][source]
    
+eitprocessing.datahandling.loading.draeger._convert_medibus_data(medibus_data: numpy.typing.NDArray, time: numpy.typing.NDArray, sample_frequency: float) → tuple[eitprocessing.datahandling.datacollection.DataCollection, eitprocessing.datahandling.datacollection.DataCollection][source]
 
    
 
 
    
diff --git a/autoapi/eitprocessing/datahandling/loading/index.html b/autoapi/eitprocessing/datahandling/loading/index.html
index 44d1dfec0..14235db63 100644
--- a/autoapi/eitprocessing/datahandling/loading/index.html
+++ b/autoapi/eitprocessing/datahandling/loading/index.html
@@ -199,7 +199,7 @@ 
    Package Contents__post_init__()[source]
 
    
 
+
    
+
    
+property framerate: float
    
+
    Deprecated alias to sample_frequency.
    
+
    
+
 
    
 
    
 static ensure_path_list(path: str | pathlib.Path | list[str | pathlib.Path]) → list[pathlib.Path][source]
    
@@ -525,6 +531,7 @@ 
    Table of Contents
    
 
  • EITData.name
    • 
 
  • EITData.pixel_impedance
    • 
 
  • EITData.__post_init__()
    • 
+
  • EITData.framerate
    • 
 
  • EITData.ensure_path_list()
    • 
 
  • EITData.__add__()
    • 
 
  • EITData.concatenate()
    • 
diff --git a/autoapi/eitprocessing/index.html b/autoapi/eitprocessing/index.html
index 4ba90f1d0..a2940442a 100644
--- a/autoapi/eitprocessing/index.html
+++ b/autoapi/eitprocessing/index.html
@@ -79,7 +79,7 @@ 
    Attributes
    
 
    
 
    
-eitprocessing.__version__ = '1.2.1'[source]
    
+eitprocessing.__version__ = '1.3.0'[source]
 
    
 
 
diff --git a/genindex.html b/genindex.html
index 044a29551..e22e086a8 100644
--- a/genindex.html
+++ b/genindex.html
@@ -741,16 +741,22 @@ 
    F
    
         
  • (eitprocessing.filters.butterworth_filters.LowPassFilter attribute)
 
    • 
       
-  
-  
+  
      
       
    • find_breaths() (eitprocessing.features.breath_detection.BreathDetection method)
 
      • 
       
    • float32() (eitprocessing.datahandling.loading.binreader.BinReader method)
 
      • 
       
    • float64() (eitprocessing.datahandling.loading.binreader.BinReader method)
 
      • 
+      
    • framerate (eitprocessing.datahandling.eitdata.EITData property)
+
+      
      • 
       
    • from_compact_yaml() (eitprocessing.categories.Category class method)
 
      • 
       
    • from_dict() (eitprocessing.categories.Category class method)
@@ -1088,9 +1094,11 @@ 
      R
      
 
      S
      
 
      
   
        
-      
      • sample_frequency (eitprocessing.datahandling.eitdata.EITData attribute)
+      
      • sample_frequency (eitprocessing.datahandling.continuousdata.ContinuousData attribute)
 
       
        • 
diff --git a/objects.inv b/objects.inv
index fa79b2d34..cc4c66f1f 100644
Binary files a/objects.inv and b/objects.inv differ
diff --git a/searchindex.js b/searchindex.js
index 7dd6bf665..1ad3921e8 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
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