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Brainstorm meeting (Oct 9th 2020)
Bob Dröge edited this page Oct 12, 2020
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- Victor Holanda Rusu (CSCS)
- Kenneth Hoste (HPC-UGent)
- Terje Kvernes (UiO)
- Maxim Masterov (SURF)
- Alan O'Cais (JSC)
- Caspar van Leeuwen (SURF)
- Peter Stol (VU)
- Bob Dröge (RUG)
(by Kenneth)
- format?
- Python (like .eb)
- YAML (like .yml)
- JSON
- TOML
- what should spec file include?
- EasyBuild version?
- list of easyconfigs (wildcards)
- "requirements": gpu-only, not on aarch64, ...
- additional EasyBuild configuration options
- --from-pr
- build script
- processes spec file
- filters, figures out what to build
- resolves deps
- installs stuff one by one (don't use --robot)
- gives the option to tweak specific installations
eb eessi-2020.10.yml
eb --spec eessi@2020.10
- also support filtering on software name?
$ eb eessi-2020.09.yml --labels='arch:aarch64;system:gpu,ib;os:rhel8;cluster:lisa'
eessi-2020.09:
easybuild_version: 4.3.0
robot: True
software:
Bioconductor:
toolchains:
foss-2020a:
versions:
3.11:
versionsuffix: '-R-4.0.0'
exclude-when: arch:aarch64
EasyBuild:
toolchains:
SYSTEM:
versions: [4.3.1]
GROMACS:
toolchains:
foss-2020a:
exclude-labels: system:gpu
versions:
2020.1:
2020.3:
from_pr: 1234
fosscuda-2020a:
include-labels: system:gpu
versions: [2020.1]
OpenFOAM:
toolchains:
foss-2020a:
versions: [8, v2006]
R:
toolchains:
foss-2020a:
versions: [4.0.0]
If this file becomes too big, we can split it up in multiple files:
$ eb eessi-2020.09.yml eessi-2020.09-gromacs.yml --labels='arch:aarch64;system:gpu,ib;os:rhel8;cluster:lisa'
Stuff to rebuild with EasyBuild v4.3.1:
$ eb eb-4.3.1-rebuild.yml --trace
$ eb eb-4.3.1-rebuild.yml --dryrun
* R
eb_args: --rebuild --robot --skip
eb-4.3.2-rebuild:
easybuild_version: 4.3.2
confirmation_needed: True
rebuild-if-exists: True
robot: True
software:
impi:
toolchains:
iccifort-2020.1.217:
versions:
2019.7.217:
# fix module file for impi v2019.7.217
module_only: True
R:
toolchains:
foss-2020a:
versions:
4.0.0:
# install additional extensions for R v4.0.0
skip: True