20260218 - Containers using Apptainer #611
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| #https://orchid00.github.io/actions_sandbox/websites-using-pkgdown-bookdown-and-blogdown.html#deploy-blogdown | |
| # To Do: | |
| # 1. Create a personal access token (PAT) labeled `EMAIL`: https://github.com/settings/tokens; save the value in LastPass | |
| # 2. Create a secret labeled `EMAIL` in the repo (Settings -> Security -> Secrets -> Actions), and copy the PAT for `EMAIL` into the secret labeled `EMAIL` | |
| on: | |
| push: | |
| branches: | |
| - main | |
| name: Quarto Publish | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| #- name: Setup Python and Jupyter | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: '3.x' # Version range or exact version of a Python version to use, using SemVer's version range syntax | |
| #- run: pip install jupyter | |
| #- run: pip install -r requirements.txt | |
| - name: Install R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Session info | |
| run: Rscript -e 'sessionInfo()' | |
| - name: Setup pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 # update | |
| - name: Install libcurl on Linux | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get update -y && sudo apt-get install -y libcurl4-openssl-dev | |
| - name: Install package dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 # update | |
| - name: Install remote packages | |
| run: | | |
| Rscript -e "install.packages('rstan', repos = c('https://mc-stan.org/r-packages/', getOption('repos')))" | |
| # Rscript -e 'remotes::install_github("DevPsyLab/petersenlab")' | |
| - name: Render and Publish | |
| uses: quarto-dev/quarto-actions/publish@v2 | |
| with: | |
| target: gh-pages | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: List files in workspace | |
| if: always() | |
| run: | | |
| ls -lh | |
| find . -type f | |
| - name: Archive production artifacts | |
| if: always() # ensures it runs even if previous steps fail | |
| uses: actions/upload-artifact@v4 # update | |
| with: | |
| name: site | |
| path: _site/ |