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NEWS.md

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SpaceMarkers - unreleased

  • Added findAllHotspots to use with getPairwiseInteractingGenes
  • Return empty interacting genes list instead of failing with error when no genes pass fdr threshold.

SpaceMarkers 1.2.0

  • Updated SpaceMarkersMetric by fixing signage and log transformed to scale magnitude
  • Added getSpatialParamsExternal which enables getting spatial parameters from file or from the user.
  • Deprecated getSpatialParameters
  • Enabled includeSelf = TRUE in getInteractingGenes.R to improve hotspot detection
  • Enabled load10XCoords to read coordinates from VisiumHD directory
  • Optimized the long running row.dunn.test() function
  • Corrected sparse -> dense conversions
  • Added getPairwiseInteractingGenes which enables pairwise analysis of interacting patterns
  • getSpatialFeatures: add default method to infer the object passed to it.

SpaceMarkers 0.1.0

  • Added a NEWS.md file to track changes to the package.