From df98040b6646b06e284733c2e1e3307569777128 Mon Sep 17 00:00:00 2001 From: David Kuegler Date: Thu, 29 Aug 2024 17:14:13 +0200 Subject: [PATCH] Fix isometric to isotropic voxel size --- FastSurferCNN/data_loader/conform.py | 2 +- run_fastsurfer.sh | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/FastSurferCNN/data_loader/conform.py b/FastSurferCNN/data_loader/conform.py index 6c90ccac..5df5d728 100644 --- a/FastSurferCNN/data_loader/conform.py +++ b/FastSurferCNN/data_loader/conform.py @@ -165,7 +165,7 @@ def options_parse(): "--no_iso_vox", dest="force_iso_vox", action="store_false", - help="Ignore the forced isometric voxel size (depends on --conform_min).", + help="Ignore the forced isotropic voxel size (depends on --conform_min).", ) advanced.add_argument( "--no_img_size", diff --git a/run_fastsurfer.sh b/run_fastsurfer.sh index 233f6a9a..2bf3cd9f 100755 --- a/run_fastsurfer.sh +++ b/run_fastsurfer.sh @@ -125,10 +125,10 @@ FLAGS: (smallest per-direction voxel size) in the T1w image: If the minimal voxel size is bigger than 0.98mm, - the image is conformed to 1mm isometric. + the image is conformed to 1mm isotropic. If the minimal voxel size is smaller or equal to 0.98mm, the T1w image will be conformed to - isometric voxels of that voxel size. + isotropic voxels of that voxel size. The voxel size (whether set manually or derived) determines whether the surfaces are processed with highres options (below 1mm) or not.