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384 Open 2,614 Closed
384 Open 2,614 Closed
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Issues list

Request to allow whitespaces in folder and file names
#5158 opened Nov 14, 2024 by ndonyapour
2
Bug in overriding coordination_dir in toil/common.py
#5152 opened Nov 12, 2024 by gmloose
1
Reboot support for server mode
#5148 opened Nov 6, 2024 by unito-bot
Make Slurm Docker images for CI testing
#5147 opened Nov 6, 2024 by unito-bot
workDir and jobStore should default to (shared) tmp-outdir-prefix
#5143 opened Oct 28, 2024 by gmloose
1
1
JobServiceTest.testServiceParallelRecursive can time out
#5140 opened Oct 25, 2024 by adamnovak
1
Add leader import fallback to running imports on workers
#5135 opened Oct 24, 2024 by stxue1
Add FTP support to AbstractJobStore._get_size
#5134 opened Oct 24, 2024 by stxue1
1
1
Python3.8 has reached End of Life
#5125 opened Oct 18, 2024 by DailyDreaming
Add filesize sniffing to specify the import job's disk space for WDL and CWL
#5114 opened Oct 3, 2024 by stxue1
1
2
toil-cwl-runner can ignore LoadListingRequirements on a Workflow and always uses no_listing
#5104 opened Sep 26, 2024 by stxue1
1
toil ignores LoadListingRequirement
#5099 opened Sep 19, 2024 by adrabent
6
CachingFileStoreTestWithAwsJobStore.testSimultaneousReadsUncachedStream is flaky
#5097 opened Sep 18, 2024 by adamnovak
succeeded.log should come from a temporary directory and not the working directory intern
#5086 opened Sep 11, 2024 by adamnovak
WDLArrayBindingsJob can use a lot of memory wdl
#5085 opened Sep 11, 2024 by adamnovak
Cache can have files go missing on UCSC Slurm cluster bug slurm
#5084 opened Sep 10, 2024 by adamnovak
@adamnovak
balance load over nodes
#5077 opened Aug 29, 2024 by macmanes
4
Slurm timeouts that happen during MiniWDL container runs are not detected as timeouts slurm wdl
#5073 opened Aug 21, 2024 by adamnovak
Report metrics to Dockstore
#5070 opened Aug 19, 2024 by unito-bot
2
Move s3 delete object to lib.
#5068 opened Aug 19, 2024 by DailyDreaming
@DailyDreaming
Move head bucket function to lib.
#5066 opened Aug 19, 2024 by DailyDreaming
1
@DailyDreaming
Slurm runs can get so big that we can't list all the job IDs on the sacct command line and crash bug slurm
#5064 opened Aug 19, 2024 by adamnovak
CachingFileStoreTestWithAwsJobStore.testReturnFileSizes fails with "Stats and logging thread has quit" on CI
#5040 opened Jul 26, 2024 by adamnovak
It's hard to figure out that a Slurm WDL workflow is failing because the default job store isn't on a shared filesystem wdl
#5007 opened Jul 3, 2024 by adamnovak
Detect non-optional files that are missing at arbitrary depth in WDL task outputs
#5006 opened Jul 2, 2024 by adamnovak
ProTip! Updated in the last three days: updated:>2024-11-11.