feat: replace species count with biosamples count (#3657) (#3659)

Author: hunterckx

explorer/app/components/Index/common/constants.ts

@@ -31,13 +31,22 @@ const {
   STUDY_DESIGN,
   WORKSPACE_NAME,
 } = METADATA_KEY;
-const { DONORS, ESTIMATED_CELLS, FILE_FORMATS, FILES, SPECIES, SPECIMENS } =
-  SUMMARY;
+const {
+  BIOSAMPLES,
+  DONORS,
+  ESTIMATED_CELLS,
+  FILE_FORMATS,
+  FILES,
+  SPECIES,
+  SPECIMENS,
+} = SUMMARY;
 
 /**
  * Functions binding summary response API to summary count.
  */
 export const BIND_SUMMARY_RESPONSE = {
+  [BIOSAMPLES]: (r: AzulSummaryResponse): number =>
+    getSummaryCount(r, SUMMARY_KEY.BIOSAMPLES),
   [DONORS]: (r: AzulSummaryResponse): number =>
     getSummaryCount(r, SUMMARY_KEY.DONORS),
   [ESTIMATED_CELLS]: calculateSummaryTotalCellCount,
@@ -83,6 +92,7 @@ export const PLURALIZED_METADATA_LABEL = {
  * Set of possible summary keys.
  */
 export const SUMMARY_KEY = {
+  [BIOSAMPLES]: "biosampleCount",
   [DONORS]: "donorCount",
   [FILES]: "fileCount",
   [FILE_FORMATS]: "fileFormats",
@@ -94,6 +104,7 @@ export const SUMMARY_KEY = {
  * Set of possible summary labels.
  */
 export const SUMMARY_LABEL = {
+  [BIOSAMPLES]: "BioSamples",
   [DONORS]: "Donors",
   [ESTIMATED_CELLS]: "Estimated Cells",
   [FILES]: "Files",

explorer/app/components/Index/common/entities.ts

@@ -31,6 +31,7 @@ export enum METADATA_KEY {
  * Set of possible summary counts and other summary values as part of summary response.
  */
 export enum SUMMARY {
+  BIOSAMPLES = "BIOSAMPLES",
   DONORS = "DONORS",
   ESTIMATED_CELLS = "ESTIMATED_CELLS",
   FILE_FORMATS = "FILE_FORMATS",

explorer/site-config/anvil-cmg/dev/index/common/constants.ts

@@ -1,9 +1,9 @@
 import { SUMMARY } from "app/components/Index/common/entities";
 
 // Template constants
-const { DONORS, FILE_FORMATS, SPECIES } = SUMMARY;
+const { BIOSAMPLES, DONORS, FILE_FORMATS } = SUMMARY;
 
 /**
  * Summary display order.
  */
-export const SUMMARIES = [SPECIES, DONORS, FILE_FORMATS];
+export const SUMMARIES = [BIOSAMPLES, DONORS, FILE_FORMATS];