Collections support 2-D numerix arrays for path segments.

svn path=/trunk/matplotlib/; revision=2508

API_CHANGES

@@ -1,3 +1,10 @@
+    Collections: PolyCollection and LineCollection now accept
+    vertices or segments either in the original form [(x,y),
+    (x,y), ...] or as a 2D numerix array, with X as the first column
+    and Y as the second. Contour and quiver output the numerix
+    form.  The transforms methods Bbox.update() and
+    Transformation.seq_xy_tups() now accept either form.
+
     Collections: LineCollection is now a ScalarMappable like
     PolyCollection, etc.
 

CHANGELOG

@@ -1,7 +1,13 @@
+2006-06-22 Added support for numerix 2-D arrays as alternatives to
+           a sequence of (x,y) tuples for specifying paths in
+           collections, quiver, contour, pcolor, transforms.
+           Fixed contour bug involving setting limits for
+           color mapping.  Added numpy-style all() to numerix. - EF
+
 2006-06-20 Added custom FigureClass hook to pylab interface - see
            examples/custom_figure_class.py
 
-2006-06-16 Added colormaps from gist (gist_earth, gist_stern, 
+2006-06-16 Added colormaps from gist (gist_earth, gist_stern,
            gist_rainbow, gist_gray, gist_yarg, gist_heat, gist_ncar) - JW
 
 2006-06-16 Added a pointer to parent in figure canvas so you can

lib/matplotlib/axes.py

@@ -6,7 +6,7 @@
      transpose, log, log10, Float, Float32, ravel, zeros,\
      Int16, Int32, Int, Float64, ceil, indices, \
      shape, which, where, sqrt, asum, compress, maximum, minimum, \
-     typecode
+     typecode, concatenate, newaxis, reshape
 
 import numerix.ma as ma
 
@@ -2093,7 +2093,7 @@ def plot(self, *args, **kwargs):
 
         d = kwargs.copy()
         scalex = d.pop('scalex', True)
-        scaley = d.pop('scaley', True)        
+        scaley = d.pop('scaley', True)
         if not self._hold: self.cla()
         lines = []
         for line in self._get_lines(*args, **d):
@@ -3665,7 +3665,15 @@ def pcolor(self, *args, **kwargs):
         Y3 = compress(ravel(mask==0),ravel(ma.filled(Y[1:,1:])))
         X4 = compress(ravel(mask==0),ravel(ma.filled(X[0:-1,1:])))
         Y4 = compress(ravel(mask==0),ravel(ma.filled(Y[0:-1,1:])))
-        verts = zip(zip(X1,Y1),zip(X2,Y2),zip(X3,Y3),zip(X4,Y4))
+        npoly = len(X1)
+        xy = concatenate((X1[:,newaxis], Y1[:,newaxis],
+                             X2[:,newaxis], Y2[:,newaxis],
+                             X3[:,newaxis], Y3[:,newaxis],
+                             X4[:,newaxis], Y4[:,newaxis]),
+                             axis=1)
+        verts = reshape(xy, (npoly, 4, 2))
+
+        #verts = zip(zip(X1,Y1),zip(X2,Y2),zip(X3,Y3),zip(X4,Y4))
 
         C = compress(ravel(mask==0),ravel(ma.filled(C[0:Nx-1,0:Ny-1])))
 
@@ -4486,7 +4494,7 @@ def grid(self, b):
         'Set the axes grids on or off; b is a boolean'
         self._gridOn = b
 
-    def autoscale_view(self):
+    def autoscale_view(self, scalex=True, scaley=True):
         'set the view limits to include all the data in the axes'
         self.rintd.set_bounds(0, self.get_rmax())
         rmin, rmax = self.rlocator.autoscale()

lib/matplotlib/collections.py

@@ -231,7 +231,8 @@ class PolyCollection(PatchCollection):
     def __init__(self, verts, **kwargs):
         """
         verts is a sequence of ( verts0, verts1, ...) where verts_i is
-        a sequence of xy tuples of vertices.
+        a sequence of xy tuples of vertices, or an equivalent
+        numerix array of shape (nv,2).
         See PatchCollection for kwargs.
         """
         PatchCollection.__init__(self,**kwargs)

lib/matplotlib/colorbar.py

@@ -217,9 +217,13 @@ def _edges(self, X, Y):
         '''
         N = nx.shape(X)[0]
         if self.orientation == 'vertical':
-            return [zip(X[i], Y[i]) for i in range(1, N-1)]
+            return nx.concatenate((X[1:N-1, nx.newaxis],
+                                   Y[1:N-1, nx.newaxis]), axis=1)
+            #return [zip(X[i], Y[i]) for i in range(1, N-1)]
         else:
-            return [zip(Y[i], X[i]) for i in range(1, N-1)]
+            return nx.concatenate((Y[1:N-1, nx.newaxis],
+                                   X[1:N-1, nx.newaxis]), axis=1)
+            #return [zip(Y[i], X[i]) for i in range(1, N-1)]
 
     def _add_solids(self, X, Y, C):
         '''
@@ -456,7 +460,7 @@ def __init__(self, ax, mappable, **kw):
             kw['values'] = CS.cvalues
             kw['extend'] = CS.extend
             #kw['ticks'] = CS._levels
-            kw.setdefault('ticks', CS._levels)
+            kw.setdefault('ticks', CS.levels)
             kw['filled'] = CS.filled
             ColorbarBase.__init__(self, ax, **kw)
             if not CS.filled:

lib/matplotlib/contour.py

@@ -12,7 +12,7 @@
      transpose, log, log10, Float, Float32, ravel, zeros, Int16,\
      Int32, Int, Float64, ceil, indices, shape, which, where, sqrt,\
      asum, resize, reshape, add, argmin, arctan2, pi, argsort, sin,\
-     cos, nonzero, take
+     cos, nonzero, take, concatenate, all, newaxis
 
 from mlab import linspace, meshgrid
 import _contour
@@ -221,8 +221,8 @@ def break_linecontour(self, linecontour, rot, labelwidth, ind):
 
         slc = trans.seq_xy_tups(linecontour)
         x,y = slc[ind]
-        xx= array(slc)[:,0].copy()
-        yy=array(slc)[:,1].copy()
+        xx= asarray(slc)[:,0].copy()
+        yy=asarray(slc)[:,1].copy()
 
         #indices which are under the label
         inds=nonzero(((xx < x+xlabel) & (xx > x-xlabel)) &
@@ -258,19 +258,30 @@ def break_linecontour(self, linecontour, rot, labelwidth, ind):
 
         new_x1d, new_y1d = trans.inverse_xy_tup((new_x1, new_y1))
         new_x2d, new_y2d = trans.inverse_xy_tup((new_x2, new_y2))
+        new_xy1 = array(((new_x1d, new_y1d),))
+        new_xy2 = array(((new_x2d, new_y2d),))
 
-        if rot > 0:
-            if len(lc1) > 0 and (lc1[-1][0] <= new_x1d) and (lc1[-1][1] <= new_y1d):
-                lc1.append((new_x1d, new_y1d))
 
-            if len(lc2) > 0 and (lc2[0][0] >= new_x2d) and (lc2[0][1] >= new_y2d):
-                lc2.insert(0, (new_x2d, new_y2d))
+        if rot > 0:
+            if (len(lc1) > 0 and (lc1[-1][0] <= new_x1d)
+                             and (lc1[-1][1] <= new_y1d)):
+                lc1 = concatenate((lc1, new_xy1))
+                #lc1.append((new_x1d, new_y1d))
+
+            if (len(lc2) > 0 and (lc2[0][0] >= new_x2d)
+                             and (lc2[0][1] >= new_y2d)):
+                lc2 = concatenate((new_xy2, lc2))
+                #lc2.insert(0, (new_x2d, new_y2d))
         else:
-            if len(lc1) > 0 and ((lc1[-1][0] <= new_x1d) and (lc1[-1][1] >= new_y1d)):
-                lc1.append((new_x1d, new_y1d))
+            if (len(lc1) > 0 and ((lc1[-1][0] <= new_x1d)
+                             and (lc1[-1][1] >= new_y1d))):
+                lc1 = concatenate((lc1, new_xy1))
+                #lc1.append((new_x1d, new_y1d))
 
-            if len(lc2) > 0 and ((lc2[0][0] >= new_x2d) and (lc2[0][1] <= new_y2d)):
-                lc2.insert(0, (new_x2d, new_y2d))
+            if (len(lc2) > 0 and ((lc2[0][0] >= new_x2d)
+                             and (lc2[0][1] <= new_y2d))):
+                lc2 = concatenate((new_xy2, lc2))
+                #lc2.insert(0, (new_x2d, new_y2d))
 
         return [lc1,lc2]
 
@@ -291,8 +302,8 @@ def locate_label(self, linecontour, labelwidth):
         else:
             ysize = labelwidth
 
-        XX = resize(array(linecontour)[:,0],(xsize, ysize))
-        YY = resize(array(linecontour)[:,1],(xsize,ysize))
+        XX = resize(asarray(linecontour)[:,0],(xsize, ysize))
+        YY = resize(asarray(linecontour)[:,1],(xsize,ysize))
 
         yfirst = YY[:,0]
         ylast = YY[:,-1]
@@ -305,14 +316,19 @@ def locate_label(self, linecontour, labelwidth):
         L=sqrt((xlast-xfirst)**2+(ylast-yfirst)**2)
         dist = add.reduce(([(abs(s)[i]/L[i]) for i in range(xsize)]),-1)
         x,y,ind = self.get_label_coords(dist, XX, YY, ysize, labelwidth)
+        #print 'ind, x, y', ind, x, y
         angle = arctan2(ylast - yfirst, xlast - xfirst)
         rotation = angle[ind]*180/pi
         if rotation > 90:
             rotation = rotation -180
         if rotation < -90:
             rotation = 180 + rotation
 
-        dind = list(linecontour).index((x,y))
+        # There must be a more efficient way...
+        lc = [tuple(l) for l in linecontour]
+        dind = lc.index((x,y))
+        #print 'dind', dind
+        #dind = list(linecontour).index((x,y))
 
         return x,y, rotation, dind
 
@@ -327,14 +343,15 @@ def labels(self, inline):
                                           colors,
                                           self.label_cvalues, fslist):
             con = self.collections[icon]
-            toremove = []
-            toadd = []
             lw = self.get_label_width(lev, fmt, fsize)
+            additions = []
             for segNum, linecontour in enumerate(con._segments):
                 # for closed contours add one more point to
                 # avoid division by zero
-                if linecontour[0] == linecontour[-1]:
-                    linecontour.append(linecontour[1])
+                if all(linecontour[0] == linecontour[-1]):
+                    linecontour = concatenate((linecontour,
+                                               linecontour[1][newaxis,:]))
+                    #linecontour.append(linecontour[1])
                 # transfer all data points to screen coordinates
                 slc = trans.seq_xy_tups(linecontour)
                 if self.print_label(slc,lw):
@@ -352,15 +369,9 @@ def labels(self, inline):
                     if inline:
                         new = self.break_linecontour(linecontour, rotation,
                                                        lw, ind)
-                        toadd.extend(new)
-                        #for c in new: toadd.append(c)
-                        toremove.append(linecontour)
-            for c in toremove:
-                con._segments.remove(c)
-            for c in toadd:
-                con._segments.append(c)
-
-
+                        con._segments[segNum] = new[0]
+                        additions.append(new[1])
+            con._segments.extend(additions)
 
 class ContourSet(ScalarMappable, ContourLabeler):
     """
@@ -443,7 +454,7 @@ def __init__(self, ax, *args, **kwargs):
             lowers = self._levels[:-1]
             uppers = self._levels[1:]
             for level, level_upper, color in zip(lowers, uppers, self.tcolors):
-                nlist = C.trace(level, level_upper, points = 1,
+                nlist = C.trace(level, level_upper, points = 0,
                         nchunk = self.nchunk)
                 col = PolyCollection(nlist,
                                      linewidths = (self.linewidths,),
@@ -459,7 +470,7 @@ def __init__(self, ax, *args, **kwargs):
             #C = _contour.Cntr(x, y, z.filled(), z.mask())
             C = _contour.Cntr(x, y, z.filled(), ma.getmaskorNone(z))
             for level, color, width in zip(self.levels, self.tcolors, tlinewidths):
-                nlist = C.trace(level, points = 1)
+                nlist = C.trace(level, points = 0)
                 col = LineCollection(nlist,
                                      colors = color,
                                      linewidths = width)
@@ -625,9 +636,20 @@ def _contour_args(self, *args):
         if self.extend in ('both', 'max'):
             self._levels.append(self.zmax + 1)
         self._levels = asarray(self._levels)
+        self.vmin = amin(self.levels)  # alternative would be self.layers
+        self.vmax = amax(self.levels)
+        if self.extend in ('both', 'min') or self.clip_ends:
+            self.vmin = 2 * self.levels[0] - self.levels[1]
+        if self.extend in ('both', 'max') or self.clip_ends:
+            self.vmax = 2 * self.levels[-1] - self.levels[-2]
         self.layers = self._levels # contour: a line is a thin layer
         if self.filled:
             self.layers = 0.5 * (self._levels[:-1] + self._levels[1:])
+            if self.extend in ('both', 'min') or self.clip_ends:
+                self.layers[0] = 0.5 * (self.vmin + self._levels[1])
+            if self.extend in ('both', 'max') or self.clip_ends:
+                self.layers[-1] = 0.5 * (self.vmax + self._levels[-2])
+
         return (x, y, z)
 
     def _process_colors(self):
@@ -654,13 +676,7 @@ def _process_colors(self):
         else:
             self.cvalues = self.layers
         if not self.norm.scaled():
-            vmin = amin(self.levels)  # alternative would be self.layers
-            vmax = amax(self.levels)
-            if self.extend in ('both', 'min') or self.clip_ends:
-                vmin = 2 * self.levels[0] - self.levels[1]
-            if self.extend in ('both', 'max') or self.clip_ends:
-                vmax = 2 * self.levels[-1] - self.levels[-2]
-            self.set_clim(vmin, vmax)
+            self.set_clim(self.vmin, self.vmax)
         if self.extend in ('both', 'max', 'min'):
             self.norm.clip = False
         self.set_array(self.layers)

lib/matplotlib/numerix/__init__.py

@@ -50,22 +50,22 @@
 if which[0] == "numarray":
     #from na_imports import *
     from numarray import *
-    from _na_imports import nx, inf, infinity, Infinity, Matrix, isnan
+    from _na_imports import nx, inf, infinity, Infinity, Matrix, isnan, all
     from numarray.numeric import nonzero
     from numarray.convolve import cross_correlate, convolve
     import numarray
     version = 'numarray %s'%numarray.__version__
 elif which[0] == "numeric":
     #from nc_imports import *
     from Numeric import *
-    from _nc_imports import nx, inf, infinity, Infinity, isnan
+    from _nc_imports import nx, inf, infinity, Infinity, isnan, all
     from Matrix import Matrix
     import Numeric
     version = 'Numeric %s'%Numeric.__version__
 elif which[0] == "numpy":
     try:
         import numpy.oldnumeric as numpy
-        from numpy.oldnumeric import * 
+        from numpy.oldnumeric import *
     except ImportError:
         import numpy
         from numpy import *

lib/matplotlib/numerix/_na_imports.py

@@ -24,7 +24,15 @@ class _TypeNamespace:
 
 nx = _TypeNamespace()
 
-from numarray import asarray, dot, fromlist, NumArray, shape
+from numarray import asarray, dot, fromlist, NumArray, shape, alltrue
+from numarray import all as _all
+
+def all(a, axis=None):
+    '''Numpy-compatible version of all()'''
+    if axis is None:
+        return _all(a)
+    return alltrue(a, axis)
+
 class _Matrix(NumArray):
     """_Matrix is a ported, stripped down version of the Numeric Matrix
     class which supplies only matrix multiplication.
@@ -34,7 +42,7 @@ def _rc(self, a):
             return a
         else:
             return Matrix(a)
-            
+
     def __mul__(self, other):
         aother = asarray(other)
         #if len(aother.shape) == 0:

lib/matplotlib/numerix/_nc_imports.py

@@ -1,4 +1,4 @@
-from Numeric import array, ravel, reshape, shape
+from Numeric import array, ravel, reshape, shape, alltrue
 from Numeric import Int8, UInt8, Int16, UInt16, Int32, UInt32, \
      Float32, Float64, Complex32, Complex64, Float, Int, Complex
 from matplotlib._isnan import isnan64 as _isnan
@@ -22,6 +22,12 @@ def isnan(a):
     """y = isnan(x) returns True where x is Not-A-Number"""
     return reshape(array([_isnan(i) for i in ravel(a)],'b'), shape(a))
 
+def all(a, axis=None):
+    '''Numpy-compatible version of all()'''
+    if axis is None:
+        return alltrue(ravel(a))
+    else:
+        return alltrue(a, axis)
 
 # inf is useful for testing infinities in results of array divisions
 # (which don't raise exceptions)

lib/matplotlib/pylab.py

@@ -870,7 +870,7 @@ def figure(num=None, # autoincrement if None, else integer from 1-N
     figManager = _pylab_helpers.Gcf.get_fig_manager(num)
     if figManager is None:
         if get_backend()=='PS':  dpi = 72
-        
+
         figManager = new_figure_manager(num, figsize, dpi, facecolor, edgecolor, frameon, FigureClass=FigureClass, **kwargs)
         _pylab_helpers.Gcf.set_active(figManager)
         figManager.canvas.figure.number = num