BioFVM_agent_container.h

/*
#############################################################################
# If you use BioFVM in your project, please cite BioFVM and the version     #
# number, such as below:                                                    #
#                                                                           #
# We solved the diffusion equations using BioFVM (Version 1.1.7) [1]        #
#                                                                           #
# [1] A. Ghaffarizadeh, S.H. Friedman, and P. Macklin, BioFVM: an efficient #
#    parallelized diffusive transport solver for 3-D biological simulations,#
#    Bioinformatics 32(8): 1256-8, 2016. DOI: 10.1093/bioinformatics/btv730 #
#                                                                           #
#############################################################################
#                                                                           #
# BSD 3-Clause License (see https://opensource.org/licenses/BSD-3-Clause)   #
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# Copyright (c) 2015-2017, Paul Macklin and the BioFVM Project              #
# All rights reserved.                                                      #
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# met:                                                                      #
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# software without specific prior written permission.                       #
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*/

#ifndef __BioFVM_agent_container_h__
#define __BioFVM_agent_container_h__

#include <vector>

namespace BioFVM{

class Basic_Agent; 
class Microenvironment;

class Agent_Container
{
 private:	

 public:
	std::vector<std::vector<Basic_Agent*> > agent_grid;
	Agent_Container();	
	void register_agent( Basic_Agent* agent );
	void initialize( int num_voxels );
	void remove_agent(Basic_Agent* agent );
	void add_agent_to_outer_voxel(Basic_Agent* agent);
	void remove_agent_from_voxel(Basic_Agent* agent, int voxel_index);
	void add_agent_to_voxel(Basic_Agent* agent, int voxel_index);
	void update_all_cells(double dt);
};

int find_escaping_face_index(Basic_Agent* agent);

};
#endif