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@DIncalciLab

DIncalciLab

Bioinformatics software developed at the D'Incalci group, IRCCS Humanitas Research Hospital and Humanitas University.

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  1. samurai samurai Public

    A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).

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Repositories

Showing 10 of 15 repositories
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    DIncalciLab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,484 0 0 Updated Apr 30, 2025
  • nf-core-modules Public Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    DIncalciLab/nf-core-modules’s past year of commit activity
    Nextflow 0 MIT 849 0 0 Updated Apr 30, 2025
  • samurai Public

    A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).

    DIncalciLab/samurai’s past year of commit activity
    Nextflow 10 MIT 0 16 0 Updated Apr 29, 2025
  • PureCN Public Forked from lima1/PureCN

    Copy number calling and variant classification using targeted short read sequencing

    DIncalciLab/PureCN’s past year of commit activity
    R 0 Artistic-2.0 33 0 0 Updated Apr 23, 2025
  • sarek Public Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    DIncalciLab/sarek’s past year of commit activity
    Nextflow 0 MIT 445 0 0 Updated Apr 10, 2025
  • scnapattern Public

    A workflow to calculate SCNA patterns as described in Pesenti et al.

    DIncalciLab/scnapattern’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Mar 11, 2025
  • checkQC Public Forked from Molmed/checkQC

    CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

    DIncalciLab/checkQC’s past year of commit activity
    Python 0 GPL-3.0 17 0 0 Updated Feb 26, 2025
  • SAMURAI_paper_scripts Public
    DIncalciLab/SAMURAI_paper_scripts’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Dec 9, 2024
  • samurai-test-data Public

    Public data files for SAMURAI tests

    DIncalciLab/samurai-test-data’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 29, 2024
  • pyjanitor Public Forked from pyjanitor-devs/pyjanitor

    Clean APIs for data cleaning. Python implementation of R package Janitor

    DIncalciLab/pyjanitor’s past year of commit activity
    Python 0 MIT 174 0 0 Updated Sep 12, 2024
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