Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

RTS_stage issue #197

Open
kehming opened this issue Jun 1, 2023 · 0 comments
Open

RTS_stage issue #197

kehming opened this issue Jun 1, 2023 · 0 comments
Labels
QC SQ3 Quality Control related issues question Further information is requested

Comments

@kehming
Copy link

kehming commented Jun 1, 2023

Hello,

We encountered the following scenario:
There are four highly similar isoforms (highlighted in the red boxes in the image) with identical 3' end splicing junctions. However, only the first isoform in the red box was analyzed as "True" for RTS_stage, while the others are "False". Does this result seem strange? Shouldn't all four isoforms be analyzed as True?

test

The following image shows the output of SQANTI3, corresponding to the upper image .

test
@aarzalluz aarzalluz added question Further information is requested QC SQ3 Quality Control related issues labels Jun 15, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
QC SQ3 Quality Control related issues question Further information is requested
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@kehming @aarzalluz