diff --git a/.history/Home_20240110110014.py b/.history/Home_20240110110014.py new file mode 100644 index 0000000..ddf43dd --- /dev/null +++ b/.history/Home_20240110110014.py @@ -0,0 +1,168 @@ +import streamlit as st +import pandas as pd +import re +import numpy as np + +import ParsingModule +import warnings +warnings.filterwarnings("ignore") +import os +import json +import gzip +local_dir = os.path.dirname(__file__) +from PIL import Image +import base64 +import io +st.set_page_config( + page_title="lesSDRF", + layout="wide", + menu_items={ + "Get help": "https://github.com/compomics/lesSDRF/issues", + "Report a bug": "https://github.com/compomics/lesSDRF/issues", + }, +) + +def add_logo(logo_path, width, height): + """Read and return a resized logo""" + logo = Image.open(logo_path) + modified_logo = logo.resize((width, height)) + return modified_logo + +def get_base64_image(image): + img_buffer = io.BytesIO() + image.save(img_buffer, format="PNG") + img_str = base64.b64encode(img_buffer.getvalue()).decode() + return img_str + +my_logo = add_logo(logo_path="final_logo.png", width=149, height=58) + +st.markdown( + f""" + + """, + unsafe_allow_html=True, +) + +#get local directory using os, and add the data folder to the path + + + +# use streamlit cache data to load gzipped jsons files from folder +@st.cache_data +def load_data(): + local_dir = os.path.dirname(__file__) + folder_path = os.path.join(local_dir, "data") + unimod_path = os.path.join(local_dir, "ontology", "unimod.csv") + data = {} + for filename in os.listdir(folder_path): + # do not load the files containing the following names: archae, bacteria, eukaryota, virus, unclassified, other sequences + if re.search(r"archaea|bacteria|eukaryota|virus|unclassified|other sequences", filename): + continue + file_path = os.path.join(folder_path, filename) + if filename.endswith(".json.gz"): + try: + with gzip.open(file_path, "rb") as f: + file_data = json.load(f) + filename_key = filename.replace(".json.gz", "") + data[filename_key] = file_data + except gzip.BadGzipFile: + st.write(f"Error reading file {file_path}: not a gzipped file") + else: + st.write(f"Skipping file {file_path}: not a gzipped file") + + unimod = pd.read_csv(unimod_path, sep="\t") + return data, unimod + + +data_dict, unimod = load_data() +if "data_dict" not in st.session_state: + st.session_state["data_dict"] = data_dict +if "unimod" not in st.session_state: + st.session_state["unimod"] = unimod +st.title("Welcome to lesSDRF") +st.subheader("Spending less time on SDRF creates more time for amazing research") +st.write( + """By providing metadata in a machine-readable format, other researchers can access your data more easily and you maximize its impact. + The Sample and Data Relationship Format ([SDRF](https://www.nature.com/articles/s41467-021-26111-3)) is the HUPO-PSI recognized metadata format within proteomics. lesSDRF will streamline this annotation process for you. This tool is developed by the [CompOmics group](https://compomics.com/) and published in [Nature Communications](https://www.nature.com/articles/s41467-023-42543-5). \n""") +st.write(""" + On this homepage, select the species-specific default SDRF file that matches your study and provide the raw file names. + Then, follow the steps in the sidebar. +- Step 1: If you have a local metadata file, you can upload it to map to the SDRF file +- Step 2: Provide information on potential labels in your sample +- Step 3: Fill in the columns that are required for a valid SDRF +- Step 4: Fill in columns with additional information to further optimise your SDRF file +- Step 5: For atypical experiment types, you can check community suggested columns \n +""" +) + +st.markdown("""You are able to download your intermediate file at any given time, so you can come back to the other steps whenever suits you. +Upload your intermediate SDRF file here:""") + +upload_df = st.file_uploader( + "Upload intermediate SDRF file", type=["tsv"], accept_multiple_files=False, help='Upload a previously saved SDRF file. It should be in tsv format and should not contain more than 250 samples' +) +if upload_df is not None: + template_df = pd.read_csv(upload_df, sep='\t') + if template_df.shape[0]>250: + st.error('Too many samples, please upload a maximum of 250 samples') + else: + st.write(template_df) + st.session_state["template_df"] = template_df + +st.markdown("""In need of some inspiration? Download this example SDRF file to get an idea of the required output""") +with open(f'{local_dir}/example_SDRF.tsv', 'rb') as f: + st.download_button("Download example SDRF", f, file_name="example.sdrf.tsv") + +st.subheader("Start here with a completely new SDRF file") +species = ["","human", "cell-line", "default", "nonvertebrates", "plants", "vertebrates"] +selected_species = st.selectbox("""Select a species for the SDRF template which will contain the basic colummns to fill in for this specific species. +If your species is not in the drop down list, you can always use the default template.""", +species, help="This species selection will impact the default columns present in your SDRF template. You can always add more columns in step *Additional columns*.") + +if selected_species != "": + folder_path = os.path.join(local_dir, "templates") + # Load the corresponding CSV file based on the selected species + template_df = pd.read_csv( + f"{folder_path}/sdrf-{selected_species}.tsv", + sep="\t", + ) + template_df["comment[modification parameters]"] = np.nan + template_df["comment[fragment mass tolerance]"] = np.nan + template_df["comment[precursor mass tolerance]"] = np.nan + + # Ask user to upload filenames of their samples + filenames = [] + uploaded_names = st.text_input("Input raw file names as a comma or tab separated list", help="The raw file names will be input in the comment[data file] column and are the basis of your SDRF file. Input maximum 250 raw files") + if uploaded_names is not None: + #if comma separated, split on comma, if tab separated, split on tab + if "," in uploaded_names: + uploaded_names = uploaded_names.split(",") + elif "\t" in uploaded_names: + uploaded_names = uploaded_names.split("\t") + elif " " in uploaded_names: + uploaded_names = uploaded_names.split(" ") + #remove trailing and leading spaces + uploaded_names = [name.strip() for name in uploaded_names] + filenames.append(uploaded_names) + if len(filenames[0]) > 250: + st.error('Too many samples, please upload a maximum of 250 samples') + else: + st.write(f"Added filenames: {filenames[0]}") + ## Store filenames in the dataframe + template_df["comment[data file]"] = filenames[0] + st.session_state["template_df"] = template_df + + ## Show the data in a table + st.write(template_df) + if "template_df" not in st.session_state: + st.session_state["template_df"] = template_df + with st.sidebar: + download = st.download_button("Press to download SDRF file",ParsingModule.convert_df(template_df), "intermediate_SDRF.sdrf.tsv", help="download your SDRF file") + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: + *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") \ No newline at end of file diff --git a/.history/Home_20240927141947.py b/.history/Home_20240927141947.py new file mode 100644 index 0000000..480c57f --- /dev/null +++ b/.history/Home_20240927141947.py @@ -0,0 +1,171 @@ +import streamlit as st +import pandas as pd +import re +import numpy as np + +import ParsingModule +import warnings +warnings.filterwarnings("ignore") +import os +import json +import gzip +local_dir = os.path.dirname(__file__) +from PIL import Image +import base64 +import io +st.set_page_config( + page_title="lesSDRF", + layout="wide", + menu_items={ + "Get help": "https://github.com/compomics/lesSDRF/issues", + "Report a bug": "https://github.com/compomics/lesSDRF/issues", + }, +) + +def add_logo(logo_path, width, height): + """Read and return a resized logo""" + logo = Image.open(logo_path) + modified_logo = logo.resize((width, height)) + return modified_logo + +def get_base64_image(image): + img_buffer = io.BytesIO() + image.save(img_buffer, format="PNG") + img_str = base64.b64encode(img_buffer.getvalue()).decode() + return img_str + +my_logo = add_logo(logo_path="final_logo.png", width=149, height=58) + +st.markdown( + f""" + + """, + unsafe_allow_html=True, +) + +#get local directory using os, and add the data folder to the path + + + +# use streamlit cache data to load gzipped jsons files from folder +@st.cache_data +def load_data(): + local_dir = os.path.dirname(__file__) + folder_path = os.path.join(local_dir, "data") + unimod_path = os.path.join(local_dir, "ontology", "unimod.csv") + data = {} + for filename in os.listdir(folder_path): + # do not load the files containing the following names: archae, bacteria, eukaryota, virus, unclassified, other sequences + if re.search(r"archaea|bacteria|eukaryota|virus|unclassified|other sequences", filename): + continue + file_path = os.path.join(folder_path, filename) + if filename.endswith(".json.gz"): + try: + with gzip.open(file_path, "rb") as f: + try: + file_data = json.load(f) + filename_key = filename.replace(".json.gz", "") + data[filename_key] = file_data + except json.JSONDecodeError: + st.write(f"Error decoding JSON in file {file_path}") + except gzip.BadGzipFile: + st.write(f"Error reading file {file_path}: not a gzipped file") + else: + st.write(f"Skipping file {file_path}: not a gzipped file") + + unimod = pd.read_csv(unimod_path, sep="\t") + return data, unimod + + +data_dict, unimod = load_data() +if "data_dict" not in st.session_state: + st.session_state["data_dict"] = data_dict +if "unimod" not in st.session_state: + st.session_state["unimod"] = unimod +st.title("Welcome to lesSDRF") +st.subheader("Spending less time on SDRF creates more time for amazing research") +st.write( + """By providing metadata in a machine-readable format, other researchers can access your data more easily and you maximize its impact. + The Sample and Data Relationship Format ([SDRF](https://www.nature.com/articles/s41467-021-26111-3)) is the HUPO-PSI recognized metadata format within proteomics. lesSDRF will streamline this annotation process for you. This tool is developed by the [CompOmics group](https://compomics.com/) and published in [Nature Communications](https://www.nature.com/articles/s41467-023-42543-5). \n""") +st.write(""" + On this homepage, select the species-specific default SDRF file that matches your study and provide the raw file names. + Then, follow the steps in the sidebar. +- Step 1: If you have a local metadata file, you can upload it to map to the SDRF file +- Step 2: Provide information on potential labels in your sample +- Step 3: Fill in the columns that are required for a valid SDRF +- Step 4: Fill in columns with additional information to further optimise your SDRF file +- Step 5: For atypical experiment types, you can check community suggested columns \n +""" +) + +st.markdown("""You are able to download your intermediate file at any given time, so you can come back to the other steps whenever suits you. +Upload your intermediate SDRF file here:""") + +upload_df = st.file_uploader( + "Upload intermediate SDRF file", type=["tsv"], accept_multiple_files=False, help='Upload a previously saved SDRF file. It should be in tsv format and should not contain more than 250 samples' +) +if upload_df is not None: + template_df = pd.read_csv(upload_df, sep='\t') + if template_df.shape[0]>250: + st.error('Too many samples, please upload a maximum of 250 samples') + else: + st.write(template_df) + st.session_state["template_df"] = template_df + +st.markdown("""In need of some inspiration? Download this example SDRF file to get an idea of the required output""") +with open(f'{local_dir}/example_SDRF.tsv', 'rb') as f: + st.download_button("Download example SDRF", f, file_name="example.sdrf.tsv") + +st.subheader("Start here with a completely new SDRF file") +species = ["","human", "cell-line", "default", "nonvertebrates", "plants", "vertebrates"] +selected_species = st.selectbox("""Select a species for the SDRF template which will contain the basic colummns to fill in for this specific species. +If your species is not in the drop down list, you can always use the default template.""", +species, help="This species selection will impact the default columns present in your SDRF template. You can always add more columns in step *Additional columns*.") + +if selected_species != "": + folder_path = os.path.join(local_dir, "templates") + # Load the corresponding CSV file based on the selected species + template_df = pd.read_csv( + f"{folder_path}/sdrf-{selected_species}.tsv", + sep="\t", + ) + template_df["comment[modification parameters]"] = np.nan + template_df["comment[fragment mass tolerance]"] = np.nan + template_df["comment[precursor mass tolerance]"] = np.nan + + # Ask user to upload filenames of their samples + filenames = [] + uploaded_names = st.text_input("Input raw file names as a comma or tab separated list", help="The raw file names will be input in the comment[data file] column and are the basis of your SDRF file. Input maximum 250 raw files") + if uploaded_names is not None: + #if comma separated, split on comma, if tab separated, split on tab + if "," in uploaded_names: + uploaded_names = uploaded_names.split(",") + elif "\t" in uploaded_names: + uploaded_names = uploaded_names.split("\t") + elif " " in uploaded_names: + uploaded_names = uploaded_names.split(" ") + #remove trailing and leading spaces + uploaded_names = [name.strip() for name in uploaded_names] + filenames.append(uploaded_names) + if len(filenames[0]) > 250: + st.error('Too many samples, please upload a maximum of 250 samples') + else: + st.write(f"Added filenames: {filenames[0]}") + ## Store filenames in the dataframe + template_df["comment[data file]"] = filenames[0] + st.session_state["template_df"] = template_df + + ## Show the data in a table + st.write(template_df) + if "template_df" not in st.session_state: + st.session_state["template_df"] = template_df + with st.sidebar: + download = st.download_button("Press to download SDRF file",ParsingModule.convert_df(template_df), "intermediate_SDRF.sdrf.tsv", help="download your SDRF file") + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: + *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") \ No newline at end of file diff --git a/.history/Home_20240927142559.py b/.history/Home_20240927142559.py new file mode 100644 index 0000000..7aa3f5b --- /dev/null +++ b/.history/Home_20240927142559.py @@ -0,0 +1,173 @@ +import streamlit as st +import pandas as pd +import re +import numpy as np + +import ParsingModule +import warnings +warnings.filterwarnings("ignore") +import os +import json +import gzip +local_dir = os.path.dirname(__file__) +from PIL import Image +import base64 +import io +st.set_page_config( + page_title="lesSDRF", + layout="wide", + menu_items={ + "Get help": "https://github.com/compomics/lesSDRF/issues", + "Report a bug": "https://github.com/compomics/lesSDRF/issues", + }, +) + +def add_logo(logo_path, width, height): + """Read and return a resized logo""" + logo = Image.open(logo_path) + modified_logo = logo.resize((width, height)) + return modified_logo + +def get_base64_image(image): + img_buffer = io.BytesIO() + image.save(img_buffer, format="PNG") + img_str = base64.b64encode(img_buffer.getvalue()).decode() + return img_str + +my_logo = add_logo(logo_path="final_logo.png", width=149, height=58) + +st.markdown( + f""" + + """, + unsafe_allow_html=True, +) + +#get local directory using os, and add the data folder to the path + + + +# use streamlit cache data to load gzipped jsons files from folder +@st.cache_data +def load_data(): + local_dir = os.path.dirname(__file__) + folder_path = os.path.join(local_dir, "data") + unimod_path = os.path.join(local_dir, "ontology", "unimod.csv") + data = {} + for filename in os.listdir(folder_path): + # do not load the files containing the following names: archae, bacteria, eukaryota, virus, unclassified, other sequences + if re.search(r"archaea|bacteria|eukaryota|virus|unclassified|other sequences", filename): + continue + file_path = os.path.join(folder_path, filename) + if filename.endswith(".json.gz"): + try: + with gzip.open(file_path, "rb") as f: + try: + json_bytes = f.read() + json_str = json_bytes.decode('utf-8') + file_data = json.loads(json_str) + filename_key = filename.replace(".json.gz", "") + data[filename_key] = file_data + except json.JSONDecodeError: + st.write(f"Error decoding JSON in file {file_path}") + except gzip.BadGzipFile: + st.write(f"Error reading file {file_path}: not a gzipped file") + else: + st.write(f"Skipping file {file_path}: not a gzipped file") + + unimod = pd.read_csv(unimod_path, sep="\t") + return data, unimod + + +data_dict, unimod = load_data() +if "data_dict" not in st.session_state: + st.session_state["data_dict"] = data_dict +if "unimod" not in st.session_state: + st.session_state["unimod"] = unimod +st.title("Welcome to lesSDRF") +st.subheader("Spending less time on SDRF creates more time for amazing research") +st.write( + """By providing metadata in a machine-readable format, other researchers can access your data more easily and you maximize its impact. + The Sample and Data Relationship Format ([SDRF](https://www.nature.com/articles/s41467-021-26111-3)) is the HUPO-PSI recognized metadata format within proteomics. lesSDRF will streamline this annotation process for you. This tool is developed by the [CompOmics group](https://compomics.com/) and published in [Nature Communications](https://www.nature.com/articles/s41467-023-42543-5). \n""") +st.write(""" + On this homepage, select the species-specific default SDRF file that matches your study and provide the raw file names. + Then, follow the steps in the sidebar. +- Step 1: If you have a local metadata file, you can upload it to map to the SDRF file +- Step 2: Provide information on potential labels in your sample +- Step 3: Fill in the columns that are required for a valid SDRF +- Step 4: Fill in columns with additional information to further optimise your SDRF file +- Step 5: For atypical experiment types, you can check community suggested columns \n +""" +) + +st.markdown("""You are able to download your intermediate file at any given time, so you can come back to the other steps whenever suits you. +Upload your intermediate SDRF file here:""") + +upload_df = st.file_uploader( + "Upload intermediate SDRF file", type=["tsv"], accept_multiple_files=False, help='Upload a previously saved SDRF file. It should be in tsv format and should not contain more than 250 samples' +) +if upload_df is not None: + template_df = pd.read_csv(upload_df, sep='\t') + if template_df.shape[0]>250: + st.error('Too many samples, please upload a maximum of 250 samples') + else: + st.write(template_df) + st.session_state["template_df"] = template_df + +st.markdown("""In need of some inspiration? Download this example SDRF file to get an idea of the required output""") +with open(f'{local_dir}/example_SDRF.tsv', 'rb') as f: + st.download_button("Download example SDRF", f, file_name="example.sdrf.tsv") + +st.subheader("Start here with a completely new SDRF file") +species = ["","human", "cell-line", "default", "nonvertebrates", "plants", "vertebrates"] +selected_species = st.selectbox("""Select a species for the SDRF template which will contain the basic colummns to fill in for this specific species. +If your species is not in the drop down list, you can always use the default template.""", +species, help="This species selection will impact the default columns present in your SDRF template. You can always add more columns in step *Additional columns*.") + +if selected_species != "": + folder_path = os.path.join(local_dir, "templates") + # Load the corresponding CSV file based on the selected species + template_df = pd.read_csv( + f"{folder_path}/sdrf-{selected_species}.tsv", + sep="\t", + ) + template_df["comment[modification parameters]"] = np.nan + template_df["comment[fragment mass tolerance]"] = np.nan + template_df["comment[precursor mass tolerance]"] = np.nan + + # Ask user to upload filenames of their samples + filenames = [] + uploaded_names = st.text_input("Input raw file names as a comma or tab separated list", help="The raw file names will be input in the comment[data file] column and are the basis of your SDRF file. Input maximum 250 raw files") + if uploaded_names is not None: + #if comma separated, split on comma, if tab separated, split on tab + if "," in uploaded_names: + uploaded_names = uploaded_names.split(",") + elif "\t" in uploaded_names: + uploaded_names = uploaded_names.split("\t") + elif " " in uploaded_names: + uploaded_names = uploaded_names.split(" ") + #remove trailing and leading spaces + uploaded_names = [name.strip() for name in uploaded_names] + filenames.append(uploaded_names) + if len(filenames[0]) > 250: + st.error('Too many samples, please upload a maximum of 250 samples') + else: + st.write(f"Added filenames: {filenames[0]}") + ## Store filenames in the dataframe + template_df["comment[data file]"] = filenames[0] + st.session_state["template_df"] = template_df + + ## Show the data in a table + st.write(template_df) + if "template_df" not in st.session_state: + st.session_state["template_df"] = template_df + with st.sidebar: + download = st.download_button("Press to download SDRF file",ParsingModule.convert_df(template_df), "intermediate_SDRF.sdrf.tsv", help="download your SDRF file") + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: + *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") \ No newline at end of file diff --git a/.history/Home_20240927142600.py b/.history/Home_20240927142600.py new file mode 100644 index 0000000..7aa3f5b --- /dev/null +++ b/.history/Home_20240927142600.py @@ -0,0 +1,173 @@ +import streamlit as st +import pandas as pd +import re +import numpy as np + +import ParsingModule +import warnings +warnings.filterwarnings("ignore") +import os +import json +import gzip +local_dir = os.path.dirname(__file__) +from PIL import Image +import base64 +import io +st.set_page_config( + page_title="lesSDRF", + layout="wide", + menu_items={ + "Get help": "https://github.com/compomics/lesSDRF/issues", + "Report a bug": "https://github.com/compomics/lesSDRF/issues", + }, +) + +def add_logo(logo_path, width, height): + """Read and return a resized logo""" + logo = Image.open(logo_path) + modified_logo = logo.resize((width, height)) + return modified_logo + +def get_base64_image(image): + img_buffer = io.BytesIO() + image.save(img_buffer, format="PNG") + img_str = base64.b64encode(img_buffer.getvalue()).decode() + return img_str + +my_logo = add_logo(logo_path="final_logo.png", width=149, height=58) + +st.markdown( + f""" + + """, + unsafe_allow_html=True, +) + +#get local directory using os, and add the data folder to the path + + + +# use streamlit cache data to load gzipped jsons files from folder +@st.cache_data +def load_data(): + local_dir = os.path.dirname(__file__) + folder_path = os.path.join(local_dir, "data") + unimod_path = os.path.join(local_dir, "ontology", "unimod.csv") + data = {} + for filename in os.listdir(folder_path): + # do not load the files containing the following names: archae, bacteria, eukaryota, virus, unclassified, other sequences + if re.search(r"archaea|bacteria|eukaryota|virus|unclassified|other sequences", filename): + continue + file_path = os.path.join(folder_path, filename) + if filename.endswith(".json.gz"): + try: + with gzip.open(file_path, "rb") as f: + try: + json_bytes = f.read() + json_str = json_bytes.decode('utf-8') + file_data = json.loads(json_str) + filename_key = filename.replace(".json.gz", "") + data[filename_key] = file_data + except json.JSONDecodeError: + st.write(f"Error decoding JSON in file {file_path}") + except gzip.BadGzipFile: + st.write(f"Error reading file {file_path}: not a gzipped file") + else: + st.write(f"Skipping file {file_path}: not a gzipped file") + + unimod = pd.read_csv(unimod_path, sep="\t") + return data, unimod + + +data_dict, unimod = load_data() +if "data_dict" not in st.session_state: + st.session_state["data_dict"] = data_dict +if "unimod" not in st.session_state: + st.session_state["unimod"] = unimod +st.title("Welcome to lesSDRF") +st.subheader("Spending less time on SDRF creates more time for amazing research") +st.write( + """By providing metadata in a machine-readable format, other researchers can access your data more easily and you maximize its impact. + The Sample and Data Relationship Format ([SDRF](https://www.nature.com/articles/s41467-021-26111-3)) is the HUPO-PSI recognized metadata format within proteomics. lesSDRF will streamline this annotation process for you. This tool is developed by the [CompOmics group](https://compomics.com/) and published in [Nature Communications](https://www.nature.com/articles/s41467-023-42543-5). \n""") +st.write(""" + On this homepage, select the species-specific default SDRF file that matches your study and provide the raw file names. + Then, follow the steps in the sidebar. +- Step 1: If you have a local metadata file, you can upload it to map to the SDRF file +- Step 2: Provide information on potential labels in your sample +- Step 3: Fill in the columns that are required for a valid SDRF +- Step 4: Fill in columns with additional information to further optimise your SDRF file +- Step 5: For atypical experiment types, you can check community suggested columns \n +""" +) + +st.markdown("""You are able to download your intermediate file at any given time, so you can come back to the other steps whenever suits you. +Upload your intermediate SDRF file here:""") + +upload_df = st.file_uploader( + "Upload intermediate SDRF file", type=["tsv"], accept_multiple_files=False, help='Upload a previously saved SDRF file. It should be in tsv format and should not contain more than 250 samples' +) +if upload_df is not None: + template_df = pd.read_csv(upload_df, sep='\t') + if template_df.shape[0]>250: + st.error('Too many samples, please upload a maximum of 250 samples') + else: + st.write(template_df) + st.session_state["template_df"] = template_df + +st.markdown("""In need of some inspiration? Download this example SDRF file to get an idea of the required output""") +with open(f'{local_dir}/example_SDRF.tsv', 'rb') as f: + st.download_button("Download example SDRF", f, file_name="example.sdrf.tsv") + +st.subheader("Start here with a completely new SDRF file") +species = ["","human", "cell-line", "default", "nonvertebrates", "plants", "vertebrates"] +selected_species = st.selectbox("""Select a species for the SDRF template which will contain the basic colummns to fill in for this specific species. +If your species is not in the drop down list, you can always use the default template.""", +species, help="This species selection will impact the default columns present in your SDRF template. You can always add more columns in step *Additional columns*.") + +if selected_species != "": + folder_path = os.path.join(local_dir, "templates") + # Load the corresponding CSV file based on the selected species + template_df = pd.read_csv( + f"{folder_path}/sdrf-{selected_species}.tsv", + sep="\t", + ) + template_df["comment[modification parameters]"] = np.nan + template_df["comment[fragment mass tolerance]"] = np.nan + template_df["comment[precursor mass tolerance]"] = np.nan + + # Ask user to upload filenames of their samples + filenames = [] + uploaded_names = st.text_input("Input raw file names as a comma or tab separated list", help="The raw file names will be input in the comment[data file] column and are the basis of your SDRF file. Input maximum 250 raw files") + if uploaded_names is not None: + #if comma separated, split on comma, if tab separated, split on tab + if "," in uploaded_names: + uploaded_names = uploaded_names.split(",") + elif "\t" in uploaded_names: + uploaded_names = uploaded_names.split("\t") + elif " " in uploaded_names: + uploaded_names = uploaded_names.split(" ") + #remove trailing and leading spaces + uploaded_names = [name.strip() for name in uploaded_names] + filenames.append(uploaded_names) + if len(filenames[0]) > 250: + st.error('Too many samples, please upload a maximum of 250 samples') + else: + st.write(f"Added filenames: {filenames[0]}") + ## Store filenames in the dataframe + template_df["comment[data file]"] = filenames[0] + st.session_state["template_df"] = template_df + + ## Show the data in a table + st.write(template_df) + if "template_df" not in st.session_state: + st.session_state["template_df"] = template_df + with st.sidebar: + download = st.download_button("Press to download SDRF file",ParsingModule.convert_df(template_df), "intermediate_SDRF.sdrf.tsv", help="download your SDRF file") + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: + *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") \ No newline at end of file diff --git a/.history/ParsingModule_20231009093232.py b/.history/ParsingModule_20231009093232.py new file mode 100644 index 0000000..cc28d51 --- /dev/null +++ b/.history/ParsingModule_20231009093232.py @@ -0,0 +1,410 @@ +import pronto +from pronto import Ontology +from collections import defaultdict +import json +import gzip +import pickle +import streamlit as st +import numpy as np +import pandas as pd +import re +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode +from streamlit_tree_select import tree_select + +def help(): + """This module contains all parsable functions necessary to build the SDRF GUI""" + print("This module contains all parsable functions necessary to build the SDRF GUI") + print( + "The get_json_subclasses function returns a nested dictionary of all subclasses of a given term in a json ontology" + ) + print( + "The get_obo_subclasses function returns a nested dictionary of all subclasses of a given term in an obo ontology" + ) + print("The flatten function returns a list of all values in a nested dictionary") + print( + "The transform_nested_dict_to_tree function returns a list of dictionaries that can be used to build a tree in streamlit" + ) + print( + "The store_as_gzipped_json function stores a dictionary/list as a gzipped json file" + ) + print( + "The open_gzipped_json function opens a gzipped json file and returns the dictionary/list" + ) + + +def get_json_subclasses(ontology, term_id, term_label, d, nodes_dict=None, data=None): + """This function takes the path to the ontology file in json format, the desired term id from the root node (e.g. http://www.ebi.ac.uk/efo/EFO_0000635) and the term label (e.g. 'organism part') + and returns a nested dictionary of all subclasses of the given term. + """ + if nodes_dict is None: # load the json file only once + with open(ontology) as f: + data = json.load(f) + nodes_dict = { + node["id"]: node["lbl"] + for node in data["graphs"][0]["nodes"] + if all(key in node for key in ["id", "lbl"]) + } + + if term_id not in nodes_dict: + return f"{term_id} node not in ontology" # node not found in ontology, return early + + if term_label not in d: + d[term_label] = {} # add the parent to the dictionary + + for term in data["graphs"][0]["edges"]: # iterate through the edges + if (term["obj"] == term_id) and ( + term["pred"] in ["http://purl.obolibrary.org/obo/BFO_0000050", "is_a"] + ): + parent = term["sub"] + if parent == "http://purl.obolibrary.org/obo/MONDO_0011876": + continue # skip MONDO_0011876 + parent_label = nodes_dict.get(parent) + if parent_label is not None: + if parent_label in d: + d[term_label][parent_label] = d[parent_label] + del d[parent_label] + else: + d[term_label][parent_label] = {} + get_json_subclasses( + ontology, parent, parent_label, d[term_label], nodes_dict, data + ) + + return d + + +def remove_duplicate_values(d): + for k, v in d.items(): + if isinstance(v, dict): + remove_duplicate_values(v) + if k in v: + del v[k] + + return d + + +def get_obo_subclasses(onto, obo_id, obo_label, d=None, distance=1): + if d is None: + d = defaultdict(dict) + """This function is built on pronto. + It takes the path to the ontology file in obo format, the desired term id from the root node (e.g. MS:1000031) and the term label (e.g. 'instrument model') + and returns a nested dictionary of all subclasses of the given term. To only get the direct subclasses, the distance is set to 1 + """ + + subclasses = list(onto[obo_id].subclasses(distance=1)) + if len(subclasses) > 1: + d[obo_label] = {} + for i in subclasses[1:]: + obo_id = i.id + obo_label = i.name + d[obo_label] = get_obo_subclasses( + onto, obo_id, obo_label, defaultdict(dict), distance=1 + ) + else: + d = {} + + d = remove_dupcliate_values(d) + return d + + +def flatten(d): + """This function takes a nested dictionary and returns all unique elements in the dictionary as a list""" + if not isinstance(d, dict): + print("Input is not a dictionary") + items = [] + for k, v in d.items(): # iterate through the dictionary + items.append(k) # add the key to the list + if isinstance( + v, dict + ): # if the value is a dictionary, call the function recursively + items.extend(flatten(v)) + else: + items.append(v) + items = list(set(items)) + return items + + +def transform_nested_dict_to_tree(d, parent_label=None, parent_value=None): + """This function takes a nested dictionary and returns a tree like dictionary that can be used in streamlit streamlit_tree_select""" + if not isinstance(d, dict): + print("Input is not a dictionary") + result = [] + for key, value in d.items(): + label = key + if parent_label: + label = f"{parent_label} , {key}" + children = [] + if value: + children = transform_nested_dict_to_tree(value, label, key) + if children: + result.append({"label": key, "value": label, "children": children}) + else: + result.append({"label": key, "value": label}) + return result + + +def store_as_gzipped_json(data, filename): + """ "Given a datatype to store and the filename, this function stores the data as a gzipped json file in .\\data""" + path = ( + ".\\data\\" + + filename + + ".json.gz" + ) + with gzip.open(path, "wt") as f: + json.dump(data, f) + return f"Stored {filename} as gzipped json" + + +def open_gzipped_json(filename): + """ "Given a filename, this function opens the data that was stored as a gzipped json in .\\data""" + path = ( + ".\\data\\" + + filename + + ".json.gz" + ) + with gzip.open(path, "rt") as f: + data = json.load(f) + return data + +def fill_in_from_list(df, column, values_list=None, multiple_in_one=False): + """provide dataframe, column and optional a list of values. + reates an editable dataframe in which only that column can be modified possibly with the values from the list + If the list is empty, the column is freely editable + If the list contains only one value, the column is filled with that value + If the list contains more than one value, a dropdown menu is created with the values from the list + If multiple_in_one is True, multiple columns are created with the same dropdown menu""" + columns_to_adapt = [column] + df.fillna("empty", inplace=True) + cell_style = {"background-color": "#ffa478"} + builder = GridOptionsBuilder.from_dataframe(df) + + if values_list and (len(values_list)==1): # if there is only one value, fill in the column with that value + df[column] = values_list[0] + df.replace("empty", np.nan, inplace=True) + elif values_list and (len(values_list)>1): # if there is a list of values, add a dropdown menu to the column + # add '' to the beginning of values list so it starts with an empty input + values_list.insert(0, "") + values_list.insert(1, "NA") #add NA + if multiple_in_one: # add columns based on number of values in values_list + for i in range(len(values_list)-1): + df[f"{column}_{i}"] = "" + columns_to_adapt.append(f"{column}_{i}") + builder.configure_columns(columns_to_adapt, editable=True, cellEditor="agSelectCellEditor", cellEditorParams={"values": values_list}, cellStyle = cell_style) + else: # if not multiple_in_one, just add the column + builder.configure_column(column,editable=True,cellEditor="agSelectCellEditor",cellEditorParams={"values": values_list}, cellStyle = cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + gridOptions = builder.build() + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + + elif values_list is None: # if there is no list of values, make the column editable + builder.configure_column(column, editable=True, cellStyle = cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + gridOptions = builder.build() + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + return df + +def multiple_ontology_tree(column, element_list, nodes, df, multiple_in_one = False): + """ + This function asks the column name, all the elements for the drop down menu and the nodes for the tree. + It asks for the number of inputs and then creates the input dataframe with in-cell drop down menus with the chosen values. + """ + #get index of column based on name + if column not in df.columns: + df[column] = np.nan + index = df.columns.get_loc(column) + col1, col2, col3 = st.columns(3) + columns_to_adapt = [column] + with col1: + multiple = st.radio(f"Are there multiple {column} in your data?", ("No", "Yes")) + if multiple == "Yes": + with col2: + number = st.number_input( + f"How many different {column} are in your data?", + min_value=0, + step=1) + with col3: + if multiple_in_one: + multiple_in_one_sel = st.radio(f"Are there multiple {column} within one sample?", ("No", "Yes")) + if multiple_in_one_sel == "Yes": + for i in range(number-1): + # add column next to the original column if it is not already there + if f"{column}_{i+1}" not in df.columns: + df.insert(index+1, f"{column}_{i+1}", "empty") + columns_to_adapt.append(f"{column}_{i+1}") + else: + number = 1 + + with st.form("Select here your ontology terms using the autocomplete function or the ontology-based tree menu", clear_on_submit=True): + col4, col5 = st.columns(2) + with col4: + # selectbox with search option + element_list.append(" ") + element_list = set(element_list) + return_search = st.multiselect( + "Select your matching ontology term using this autocomplete function", + element_list, + max_selections=number, + ) + + with col5: + st.write("Or follow the ontology based drop down menu below") + return_select = tree_select( + nodes, no_cascade=True, expand_on_click=True, check_model="leaf" + ) + all = return_search + return_select["checked"] + all = [i.split(',')[-1] for i in all if i is not None] + if (len(all) >= 1) & (len(all) != number): + st.error(f"You need to select a total of {number}.") + s = st.form_submit_button("Submit selection") + if s: + st.write(f"Selection contains: {all}") + + if s & (len(all) == 1) & number == 1: + df[column] = all[0] + st.experimental_rerun() + + else: + df.fillna("empty", inplace=True) + st.write(f"If all cells are correctly filled in click twice on the update button") + cell_style = {"background-color": "#ffa478"} + builder = GridOptionsBuilder.from_dataframe(df) + builder.configure_columns(columns_to_adapt,editable=True,cellEditor="agSelectCellEditor",cellEditorParams={"values": all},cellStyle=cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + go = builder.build() + grid_return = AgGrid(df,gridOptions=go,update_mode=GridUpdateMode.MANUAL,data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + return df + +def convert_df(df): + return df.to_csv(index=False).encode("utf-8") + +# function check_df_for_ontology_terms +# checks if the dataframe contains ontology terms + +def check_df_for_ontology_terms(df, columns_to_check, column_ontology_dict): + clear_columns = [] + for i in columns_to_check: + name = (i.split('[')[-1].split(']')[0]).replace(' ', '_') + name = 'all_' + name + '_elements' + #if the column is an ontology column + if name in column_ontology_dict.keys(): + onto_elements = column_ontology_dict[name] + elements = df[i].unique() + elements = [i for i in elements if i is not np.nan] + # check if elements are all in onto_elements + # if not, return the elements that are not in the ontology + if not set(elements).issubset(set(onto_elements)): + not_in_onto = set(elements) - set(onto_elements) + st.error(f'The following elements are not in the ontology: {not_in_onto}') + clear_columns.append(i) + elif set(elements).issubset(set(onto_elements)) and len(elements) >= 1: + st.success(f'The column {i} contains only ontology terms') + if i == 'characteristics[age]': + if not check_age_format(df, 'characteristics[age]'): + st.error(f'The age format is not correct. Please use the following format: 1Y 2M 3D') + clear_columns.append(i) + if i == 'characteristics[sex]': + uniques = np.unique(df[i].values()) + accepted = ['M', 'F', 'unknown'] + # check if uniques contain value that is not in accepted + if not set(uniques).issubset(set(accepted)): + not_in_onto = set(uniques) - set(accepted) + st.error(f'{not_in_onto} are not accepted in the characteristics[sex] column. Please use M, F or unknown') + clear_columns.append(i) + + # if there are columns that are not in the ontology, ask if the user wants to clear them + if len(clear_columns) >= 1: + st.error(f'The following columns contain elements that are not in the ontology: {clear_columns}') + st.write('Do you want to clear these columns?') + y = st.checkbox("Yes") + n = st.checkbox("No") + if y: + for i in clear_columns: + df[i] = np.nan + st.success(f'Column {i} has been cleared') + +def check_age_format(df, column): + """ + Check if the data in a column in a pandas dataframe follows the age formatting of Y M D. + If a range, this should be formatted as e.g. 48Y-84Y. + Parameters: + df (pandas.DataFrame): The pandas dataframe to check. + column (str): The name of the column to check. + + + Returns: + tuple: (bool, list) where bool indicates if all data in the column follows the age formatting + and list contains the wrong parts (if any). + """ + wrong_parts = [] + for index, row in df.iterrows(): + if row[column] not in ["", "empty", "None", "Not available"]: + if not re.match(r"^(\s*\d+\s*Y)?(\s*\d+\s*M)?(\s*\d+\s*D)?(|\s*-\s*\d+\s*Y)?(|\s*-\s*\d+\s*M)?(|\s*-\s*\d+\s*D)?(/)?(|\s*\d+\s*Y)?(|\s*\d+\s*M)?(|\s*\d+\s*D)?$", str(row[column])): + wrong_parts.append(row[column]) + return False if wrong_parts else True, wrong_parts + +def convert_df(df): + """This function requires a dataframe and sorts its columns as source name - characteristics - others - comment. + Leading and trailing whitespaces are removed from all columns + It then converts the dataframe to a tsv file and downloads it + It also adds an comment[tool metadata] to indicate it was built with lesSDRF and ontology versioning""" + df["comment[tool metadata]"] = "lesSDRF v0.1.0" + #sort dataframe so that "source name" is the first column + cols = df.columns.tolist() + #get all elements from the list that start with "characteristic" and sort them alphabetically + characteristic_cols = sorted([i for i in cols if i.startswith("characteristic")]) + comment_cols = sorted([i for i in cols if i.startswith("comment")]) + factor_value_cols = sorted([i for i in cols if i.startswith("factor")]) + #get all columns that don't start with "characteristic" or "comment" + other_cols = [i for i in cols if i not in characteristic_cols and i not in comment_cols and i not in factor_value_cols and i not in ["source name"]] + #reorder the columns + new_cols = ["source name"] + characteristic_cols + other_cols + comment_cols + factor_value_cols + df = df[new_cols] + #if a column name contains _ followed by a number, remove the underscore and the number + df.columns = [re.sub(r"(_\d+)", "", i) for i in df.columns] + #remove leading and trailing whitespaces from all columns + df = df.apply(lambda x: x.str.strip() if x.dtype == "object" else x) + return df.to_csv(index=False, sep="\t").encode("utf-8") + + + +def autocomplete_species_search(taxum_list, search_term): + col1, col2 = st.columns(2) + if (search_term != "") and (search_term != None): + # Use the filter method to dynamically filter the list of options + filtered_options = list(filter(lambda x: search_term.lower() in x.lower(), taxum_list)) + exact_match = list(filter(lambda x: search_term.lower() == x.lower(), taxum_list)) + if exact_match: + with col1: + st.write(f"An exact match was found: **{exact_match[0]}**") + with col2: + use_exact_match = st.checkbox("Use exact match", key=f"exact_{search_term}") + if use_exact_match: + return exact_match[0] + # if length is between 0 and 500, display the options + if len(filtered_options) > 0 and len(filtered_options) < 500: + with col1: + selected_options = st.multiselect("Some options closely matching your search time could be found", filtered_options) + # Display the selected options + with col2: + if selected_options: + st.write("You selected:", selected_options) + use_options = st.checkbox("Use selected options", key=f"selected_{search_term}") + if use_options: + return selected_options + if len(filtered_options) > 500: + st.write("Too many closely related options to display (>500). Please refine your search.") + if len(filtered_options) == 0: + st.write("No options found. Please refine your search.") \ No newline at end of file diff --git a/.history/ParsingModule_20240927131713.py b/.history/ParsingModule_20240927131713.py new file mode 100644 index 0000000..d0975d5 --- /dev/null +++ b/.history/ParsingModule_20240927131713.py @@ -0,0 +1,417 @@ +import pronto +from pronto import Ontology +from collections import defaultdict +import json +import gzip +import pickle +import streamlit as st +import numpy as np +import pandas as pd +import re +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode +from streamlit_tree_select import tree_select + +def help(): + """This module contains all parsable functions necessary to build the SDRF GUI""" + print("This module contains all parsable functions necessary to build the SDRF GUI") + print( + "The get_json_subclasses function returns a nested dictionary of all subclasses of a given term in a json ontology" + ) + print( + "The get_obo_subclasses function returns a nested dictionary of all subclasses of a given term in an obo ontology" + ) + print("The flatten function returns a list of all values in a nested dictionary") + print( + "The transform_nested_dict_to_tree function returns a list of dictionaries that can be used to build a tree in streamlit" + ) + print( + "The store_as_gzipped_json function stores a dictionary/list as a gzipped json file" + ) + print( + "The open_gzipped_json function opens a gzipped json file and returns the dictionary/list" + ) + + +def get_json_subclasses(ontology, term_id, term_label, d, nodes_dict=None, data=None): + """This function takes the path to the ontology file in json format, the desired term id from the root node (e.g. http://www.ebi.ac.uk/efo/EFO_0000635) and the term label (e.g. 'organism part') + and returns a nested dictionary of all subclasses of the given term. + """ + if nodes_dict is None: # load the json file only once + with open(ontology) as f: + data = json.load(f) + nodes_dict = { + node["id"]: node["lbl"] + for node in data["graphs"][0]["nodes"] + if all(key in node for key in ["id", "lbl"]) + } + + if term_id not in nodes_dict: + return f"{term_id} node not in ontology" # node not found in ontology, return early + + if term_label not in d: + d[term_label] = {} # add the parent to the dictionary + + for term in data["graphs"][0]["edges"]: # iterate through the edges + if (term["obj"] == term_id) and ( + term["pred"] in ["http://purl.obolibrary.org/obo/BFO_0000050", "is_a"] + ): + parent = term["sub"] + if parent == "http://purl.obolibrary.org/obo/MONDO_0011876": + continue # skip MONDO_0011876 + parent_label = nodes_dict.get(parent) + if parent_label is not None: + if parent_label in d: + d[term_label][parent_label] = d[parent_label] + del d[parent_label] + else: + d[term_label][parent_label] = {} + get_json_subclasses( + ontology, parent, parent_label, d[term_label], nodes_dict, data + ) + + return d + + +def remove_duplicate_values(d): + for k, v in d.items(): + if isinstance(v, dict): + remove_duplicate_values(v) + if k in v: + del v[k] + + return d + + +def get_obo_subclasses(onto, obo_id, obo_label, d=None, distance=1): + if d is None: + d = defaultdict(dict) + """This function is built on pronto. + It takes the path to the ontology file in obo format, the desired term id from the root node (e.g. MS:1000031) and the term label (e.g. 'instrument model') + and returns a nested dictionary of all subclasses of the given term. To only get the direct subclasses, the distance is set to 1 + """ + + subclasses = list(onto[obo_id].subclasses(distance=1)) + if len(subclasses) > 1: + d[obo_label] = {} + for i in subclasses[1:]: + obo_id = i.id + obo_label = i.name + d[obo_label] = get_obo_subclasses( + onto, obo_id, obo_label, defaultdict(dict), distance=1 + ) + else: + d = {} + + d = remove_dupcliate_values(d) + return d + + +def flatten(d): + """This function takes a nested dictionary and returns all unique elements in the dictionary as a list""" + if not isinstance(d, dict): + print("Input is not a dictionary") + items = [] + for k, v in d.items(): # iterate through the dictionary + items.append(k) # add the key to the list + if isinstance( + v, dict + ): # if the value is a dictionary, call the function recursively + items.extend(flatten(v)) + else: + items.append(v) + items = list(set(items)) + return items + + +def transform_nested_dict_to_tree(d, parent_label=None, parent_value=None): + """This function takes a nested dictionary and returns a tree like dictionary that can be used in streamlit streamlit_tree_select""" + if not isinstance(d, dict): + print("Input is not a dictionary") + result = [] + for key, value in d.items(): + label = key + if parent_label: + label = f"{parent_label} , {key}" + children = [] + if value: + children = transform_nested_dict_to_tree(value, label, key) + if children: + result.append({"label": key, "value": label, "children": children}) + else: + result.append({"label": key, "value": label}) + return result + + +def store_as_gzipped_json(data, filename): + """ "Given a datatype to store and the filename, this function stores the data as a gzipped json file in .\\data""" + path = (fill_in_from + ".\\data\\" + + filename + + ".json.gz" + ) + with gzip.open(path, "wt") as f: + json.dump(data, f) + return f"Stored {filename} as gzipped json" + + +def open_gzipped_json(filename): + """ "Given a filename, this function opens the data that was stored as a gzipped json in .\\data""" + path = ( + ".\\data\\" + + filename + + ".json.gz" + ) + with gzip.open(path, "rt") as f: + data = json.load(f) + return data + +def fill_in_from_list(df, column, values_list=None, multiple_in_one=False): + """provide dataframe, column and optional a list of values. + reates an editable dataframe in which only that column can be modified possibly with the values from the list + If the list is empty, the column is freely editable + If the list contains only one value, the column is filled with that value + If the list contains more than one value, a dropdown menu is created with the values from the list + If multiple_in_one is True, multiple columns are created with the same dropdown menu""" + columns_to_adapt = [column] + df.fillna("empty", inplace=True) + cell_style = {"background-color": "#ffa478"} + builder = GridOptionsBuilder.from_dataframe(df) + + if values_list and (len(values_list)==1): # if there is only one value, fill in the column with that value + df[column] = values_list[0] + df.replace("empty", np.nan, inplace=True) + elif values_list and (len(values_list)>1): # if there is a list of values, add a dropdown menu to the column + # add '' to the beginning of values list so it starts with an empty input + values_list.insert(0, "") + values_list.insert(1, "NA") #add NA + if multiple_in_one: # add columns based on number of values in values_list + for i in range(len(values_list)-1): + df[f"{column}_{i}"] = "" + columns_to_adapt.append(f"{column}_{i}") + builder.configure_columns(columns_to_adapt, editable=True, cellEditor="agSelectCellEditor", cellEditorParams={"values": values_list}, cellStyle = cell_style) + else: # if not multiple_in_one, just add the column + builder.configure_column(column,editable=True,cellEditor="agSelectCellEditor",cellEditorParams={"values": values_list}, cellStyle = cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + gridOptions = builder.build() + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + + elif values_list is None: # if there is no list of values, make the column editable + builder.configure_column(column, editable=True, cellStyle = cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + gridOptions = builder.build() + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + return df + +def multiple_ontology_tree(column, element_list, nodes, df, multiple_in_one = False): + """ + This function asks the column name, all the elements for the drop down menu and the nodes for the tree. + It asks for the number of inputs and then creates the input dataframe with in-cell drop down menus with the chosen values. + """ + #get index of column based on name + if column not in df.columns: + df[column] = np.nan + index = df.columns.get_loc(column) + col1, col2, col3 = st.columns(3) + columns_to_adapt = [column] + with col1: + multiple = st.radio(f"Are there multiple {column} in your data?", ("No", "Yes")) + if multiple == "Yes": + with col2: + number = st.number_input( + f"How many different {column} are in your data?", + min_value=0, + step=1) + with col3: + if multiple_in_one: + multiple_in_one_sel = st.radio(f"Are there multiple {column} within one sample?", ("No", "Yes")) + if multiple_in_one_sel == "Yes": + for i in range(number-1): + # add column next to the original column if it is not already there + if f"{column}_{i+1}" not in df.columns: + df.insert(index+1, f"{column}_{i+1}", "empty") + columns_to_adapt.append(f"{column}_{i+1}") + else: + number = 1 + + with st.form("Select here your ontology terms using the autocomplete function or the ontology-based tree menu", clear_on_submit=True): + col4, col5 = st.columns(2) + with col4: + # selectbox with search option + element_list.append(" ") + element_list = set(element_list) + return_search = st.multiselect( + "Select your matching ontology term using this autocomplete function", + element_list, + max_selections=number, + ) + + with col5: + st.write("Or follow the ontology based drop down menu below") + return_select = tree_select( + nodes, no_cascade=True, expand_on_click=True, check_model="leaf" + ) + all = return_search + return_select["checked"] + all = [i.split(',')[-1] for i in all if i is not None] + if (len(all) >= 1) & (len(all) != number): + st.error(f"You need to select a total of {number}.") + s = st.form_submit_button("Submit selection") + if s: + st.write(f"Selection contains: {all}") + + if s & (len(all) == 1) & number == 1: + df[column] = all[0] + st.experimental_rerun() + + else: + df.fillna("empty", inplace=True) + st.write(f"If all cells are correctly filled in click twice on the update button") + cell_style = {"background-color": "#ffa478"} + builder = GridOptionsBuilder.from_dataframe(df) + builder.configure_columns(columns_to_adapt,editable=True,cellEditor="agSelectCellEditor",cellEditorParams={"values": all},cellStyle=cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + go = builder.build() + grid_return = AgGrid(df,gridOptions=go,update_mode=GridUpdateMode.MANUAL,data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + return df + +def convert_df(df): + return df.to_csv(index=False).encode("utf-8") + +# function check_df_for_ontology_terms +# checks if the dataframe contains ontology terms + +def check_df_for_ontology_terms(df, columns_to_check, column_ontology_dict): + clear_columns = [] + for i in columns_to_check: + name = (i.split('[')[-1].split(']')[0]).replace(' ', '_') + name = 'all_' + name + '_elements' + #if the column is an ontology column + if name in column_ontology_dict.keys(): + onto_elements = column_ontology_dict[name] + elements = df[i].unique() + elements = [i for i in elements if i is not np.nan] + # check if elements are all in onto_elements + # if not, return the elements that are not in the ontology + if not set(elements).issubset(set(onto_elements)): + not_in_onto = set(elements) - set(onto_elements) + st.error(f'The following elements are not in the ontology: {not_in_onto}') + clear_columns.append(i) + elif set(elements).issubset(set(onto_elements)) and len(elements) >= 1: + st.success(f'The column {i} contains only ontology terms') + if i == 'characteristics[age]': + if not check_age_format(df, 'characteristics[age]'): + st.error(f'The age format is not correct. Please use the following format: 1Y 2M 3D') + clear_columns.append(i) + if i == 'characteristics[sex]': + uniques = np.unique(df[i].values()) + accepted = ['M', 'F', 'unknown'] + # check if uniques contain value that is not in accepted + if not set(uniques).issubset(set(accepted)): + not_in_onto = set(uniques) - set(accepted) + st.error(f'{not_in_onto} are not accepted in the characteristics[sex] column. Please use M, F or unknown') + clear_columns.append(i) + + # if there are columns that are not in the ontology, ask if the user wants to clear them + if len(clear_columns) >= 1: + st.error(f'The following columns contain elements that are not in the ontology: {clear_columns}') + st.write('Do you want to clear these columns?') + y = st.checkbox("Yes") + n = st.checkbox("No") + if y: + for i in clear_columns: + df[i] = np.nan + st.success(f'Column {i} has been cleared') + +def check_age_format(df, column): + """ + Check if the data in a column in a pandas dataframe follows the age formatting of Y M D. + If a range, this should be formatted as e.g. 48Y-84Y. + Parameters: + df (pandas.DataFrame): The pandas dataframe to check. + column (str): The name of the column to check. + + + Returns: + tuple: (bool, list) where bool indicates if all data in the column follows the age formatting + and list contains the wrong parts (if any). + """ + wrong_parts = [] + for index, row in df.iterrows(): + if row[column] not in ["", "empty", "None", "Not available"]: + if not re.match(r"^(\s*\d+\s*Y)?(\s*\d+\s*M)?(\s*\d+\s*D)?(|\s*-\s*\d+\s*Y)?(|\s*-\s*\d+\s*M)?(|\s*-\s*\d+\s*D)?(/)?(|\s*\d+\s*Y)?(|\s*\d+\s*M)?(|\s*\d+\s*D)?$", str(row[column])): + wrong_parts.append(row[column]) + return False if wrong_parts else True, wrong_parts + +def convert_df(df): + """This function requires a dataframe and sorts its columns as source name - characteristics - others - comment. + Leading and trailing whitespaces are removed from all columns + It then converts the dataframe to a tsv file and downloads it + It also adds an comment[tool metadata] to indicate it was built with lesSDRF and ontology versioning""" + df["comment[tool metadata]"] = "lesSDRF v0.1.0" + #sort dataframe so that "source name" is the first column + cols = df.columns.tolist() + #get all elements from the list that start with "characteristic" and sort them alphabetically + characteristic_cols = sorted([i for i in cols if i.startswith("characteristic")]) + #first elements in characteric_cols should always be characteristics[organism] characteristics[organism part] + if "characteristics[organism]" in characteristic_cols: + characteristic_cols.remove("characteristics[organism]") + characteristic_cols.insert(0, "characteristics[organism]") + if "characteristics[organism part]" in characteristic_cols: + characteristic_cols.remove("characteristics[organism part]") + characteristic_cols.insert(1, "characteristics[organism part]") + comment_cols = sorted([i for i in cols if i.startswith("comment")]) + factor_value_cols = sorted([i for i in cols if i.startswith("factor")]) + #get all columns that don't start with "characteristic" or "comment" + other_cols = [i for i in cols if i not in characteristic_cols and i not in comment_cols and i not in factor_value_cols and i not in ["source name"]] + #reorder the columns + new_cols = ["source name"] + characteristic_cols + other_cols + comment_cols + factor_value_cols + df = df[new_cols] + #if a column name contains _ followed by a number, remove the underscore and the number + df.columns = [re.sub(r"(_\d+)", "", i) for i in df.columns] + #remove leading and trailing whitespaces from all columns + df = df.apply(lambda x: x.str.strip() if x.dtype == "object" else x) + return df.to_csv(index=False, sep="\t").encode("utf-8") + + + +def autocomplete_species_search(taxum_list, search_term): + col1, col2 = st.columns(2) + if (search_term != "") and (search_term != None): + # Use the filter method to dynamically filter the list of options + filtered_options = list(filter(lambda x: search_term.lower() in x.lower(), taxum_list)) + exact_match = list(filter(lambda x: search_term.lower() == x.lower(), taxum_list)) + if exact_match: + with col1: + st.write(f"An exact match was found: **{exact_match[0]}**") + with col2: + use_exact_match = st.checkbox("Use exact match", key=f"exact_{search_term}") + if use_exact_match: + return exact_match[0] + # if length is between 0 and 500, display the options + if len(filtered_options) > 0 and len(filtered_options) < 500: + with col1: + selected_options = st.multiselect("Some options closely matching your search time could be found", filtered_options) + # Display the selected options + with col2: + if selected_options: + st.write("You selected:", selected_options) + use_options = st.checkbox("Use selected options", key=f"selected_{search_term}") + if use_options: + return selected_options + if len(filtered_options) > 500: + st.write("Too many closely related options to display (>500). Please refine your search.") + if len(filtered_options) == 0: + st.write("No options found. Please refine your search.") \ No newline at end of file diff --git a/.history/ParsingModule_20240927140740.py b/.history/ParsingModule_20240927140740.py new file mode 100644 index 0000000..9f8c526 --- /dev/null +++ b/.history/ParsingModule_20240927140740.py @@ -0,0 +1,417 @@ +import pronto +from pronto import Ontology +from collections import defaultdict +import json +import gzip +import pickle +import streamlit as st +import numpy as np +import pandas as pd +import re +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode +from streamlit_tree_select import tree_select + +def help(): + """This module contains all parsable functions necessary to build the SDRF GUI""" + print("This module contains all parsable functions necessary to build the SDRF GUI") + print( + "The get_json_subclasses function returns a nested dictionary of all subclasses of a given term in a json ontology" + ) + print( + "The get_obo_subclasses function returns a nested dictionary of all subclasses of a given term in an obo ontology" + ) + print("The flatten function returns a list of all values in a nested dictionary") + print( + "The transform_nested_dict_to_tree function returns a list of dictionaries that can be used to build a tree in streamlit" + ) + print( + "The store_as_gzipped_json function stores a dictionary/list as a gzipped json file" + ) + print( + "The open_gzipped_json function opens a gzipped json file and returns the dictionary/list" + ) + + +def get_json_subclasses(ontology, term_id, term_label, d, nodes_dict=None, data=None): + """This function takes the path to the ontology file in json format, the desired term id from the root node (e.g. http://www.ebi.ac.uk/efo/EFO_0000635) and the term label (e.g. 'organism part') + and returns a nested dictionary of all subclasses of the given term. + """ + if nodes_dict is None: # load the json file only once + with open(ontology) as f: + data = json.load(f) + nodes_dict = { + node["id"]: node["lbl"] + for node in data["graphs"][0]["nodes"] + if all(key in node for key in ["id", "lbl"]) + } + + if term_id not in nodes_dict: + return f"{term_id} node not in ontology" # node not found in ontology, return early + + if term_label not in d: + d[term_label] = {} # add the parent to the dictionary + + for term in data["graphs"][0]["edges"]: # iterate through the edges + if (term["obj"] == term_id) and ( + term["pred"] in ["http://purl.obolibrary.org/obo/BFO_0000050", "is_a"] + ): + parent = term["sub"] + if parent == "http://purl.obolibrary.org/obo/MONDO_0011876": + continue # skip MONDO_0011876 + parent_label = nodes_dict.get(parent) + if parent_label is not None: + if parent_label in d: + d[term_label][parent_label] = d[parent_label] + del d[parent_label] + else: + d[term_label][parent_label] = {} + get_json_subclasses( + ontology, parent, parent_label, d[term_label], nodes_dict, data + ) + + return d + + +def remove_duplicate_values(d): + for k, v in d.items(): + if isinstance(v, dict): + remove_duplicate_values(v) + if k in v: + del v[k] + + return d + + +def get_obo_subclasses(onto, obo_id, obo_label, d=None, distance=1): + if d is None: + d = defaultdict(dict) + """This function is built on pronto. + It takes the path to the ontology file in obo format, the desired term id from the root node (e.g. MS:1000031) and the term label (e.g. 'instrument model') + and returns a nested dictionary of all subclasses of the given term. To only get the direct subclasses, the distance is set to 1 + """ + + subclasses = list(onto[obo_id].subclasses(distance=1)) + if len(subclasses) > 1: + d[obo_label] = {} + for i in subclasses[1:]: + obo_id = i.id + obo_label = i.name + d[obo_label] = get_obo_subclasses( + onto, obo_id, obo_label, defaultdict(dict), distance=1 + ) + else: + d = {} + + d = remove_dupcliate_values(d) + return d + + +def flatten(d): + """This function takes a nested dictionary and returns all unique elements in the dictionary as a list""" + if not isinstance(d, dict): + print("Input is not a dictionary") + items = [] + for k, v in d.items(): # iterate through the dictionary + items.append(k) # add the key to the list + if isinstance( + v, dict + ): # if the value is a dictionary, call the function recursively + items.extend(flatten(v)) + else: + items.append(v) + items = list(set(items)) + return items + + +def transform_nested_dict_to_tree(d, parent_label=None, parent_value=None): + """This function takes a nested dictionary and returns a tree like dictionary that can be used in streamlit streamlit_tree_select""" + if not isinstance(d, dict): + print("Input is not a dictionary") + result = [] + for key, value in d.items(): + label = key + if parent_label: + label = f"{parent_label} , {key}" + children = [] + if value: + children = transform_nested_dict_to_tree(value, label, key) + if children: + result.append({"label": key, "value": label, "children": children}) + else: + result.append({"label": key, "value": label}) + return result + + +def store_as_gzipped_json(data, filename): + """ "Given a datatype to store and the filename, this function stores the data as a gzipped json file in .\\data""" + path = ( + ".\\data\\" + + filename + + ".json.gz" + ) + with gzip.open(path, "wt") as f: + json.dump(data, f) + return f"Stored {filename} as gzipped json" + + +def open_gzipped_json(filename): + """ "Given a filename, this function opens the data that was stored as a gzipped json in .\\data""" + path = ( + ".\\data\\" + + filename + + ".json.gz" + ) + with gzip.open(path, "rt") as f: + data = json.load(f) + return data + +def fill_in_from_list(df, column, values_list=None, multiple_in_one=False): + """provide dataframe, column and optional a list of values. + reates an editable dataframe in which only that column can be modified possibly with the values from the list + If the list is empty, the column is freely editable + If the list contains only one value, the column is filled with that value + If the list contains more than one value, a dropdown menu is created with the values from the list + If multiple_in_one is True, multiple columns are created with the same dropdown menu""" + columns_to_adapt = [column] + df.fillna("empty", inplace=True) + cell_style = {"background-color": "#ffa478"} + builder = GridOptionsBuilder.from_dataframe(df) + + if values_list and (len(values_list)==1): # if there is only one value, fill in the column with that value + df[column] = values_list[0] + df.replace("empty", np.nan, inplace=True) + elif values_list and (len(values_list)>1): # if there is a list of values, add a dropdown menu to the column + # add '' to the beginning of values list so it starts with an empty input + values_list.insert(0, "") + values_list.insert(1, "NA") #add NA + if multiple_in_one: # add columns based on number of values in values_list + for i in range(len(values_list)-1): + df[f"{column}_{i}"] = "" + columns_to_adapt.append(f"{column}_{i}") + builder.configure_columns(columns_to_adapt, editable=True, cellEditor="agSelectCellEditor", cellEditorParams={"values": values_list}, cellStyle = cell_style) + else: # if not multiple_in_one, just add the column + builder.configure_column(column,editable=True,cellEditor="agSelectCellEditor",cellEditorParams={"values": values_list}, cellStyle = cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + gridOptions = builder.build() + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + + elif values_list is None: # if there is no list of values, make the column editable + builder.configure_column(column, editable=True, cellStyle = cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + gridOptions = builder.build() + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + return df + +def multiple_ontology_tree(column, element_list, nodes, df, multiple_in_one = False): + """ + This function asks the column name, all the elements for the drop down menu and the nodes for the tree. + It asks for the number of inputs and then creates the input dataframe with in-cell drop down menus with the chosen values. + """ + #get index of column based on name + if column not in df.columns: + df[column] = np.nan + index = df.columns.get_loc(column) + col1, col2, col3 = st.columns(3) + columns_to_adapt = [column] + with col1: + multiple = st.radio(f"Are there multiple {column} in your data?", ("No", "Yes")) + if multiple == "Yes": + with col2: + number = st.number_input( + f"How many different {column} are in your data?", + min_value=0, + step=1) + with col3: + if multiple_in_one: + multiple_in_one_sel = st.radio(f"Are there multiple {column} within one sample?", ("No", "Yes")) + if multiple_in_one_sel == "Yes": + for i in range(number-1): + # add column next to the original column if it is not already there + if f"{column}_{i+1}" not in df.columns: + df.insert(index+1, f"{column}_{i+1}", "empty") + columns_to_adapt.append(f"{column}_{i+1}") + else: + number = 1 + + with st.form("Select here your ontology terms using the autocomplete function or the ontology-based tree menu", clear_on_submit=True): + col4, col5 = st.columns(2) + with col4: + # selectbox with search option + element_list.append(" ") + element_list = set(element_list) + return_search = st.multiselect( + "Select your matching ontology term using this autocomplete function", + element_list, + max_selections=number, + ) + + with col5: + st.write("Or follow the ontology based drop down menu below") + return_select = tree_select( + nodes, no_cascade=True, expand_on_click=True, check_model="leaf" + ) + all = return_search + return_select["checked"] + all = [i.split(',')[-1] for i in all if i is not None] + if (len(all) >= 1) & (len(all) != number): + st.error(f"You need to select a total of {number}.") + s = st.form_submit_button("Submit selection") + if s: + st.write(f"Selection contains: {all}") + + if s & (len(all) == 1) & number == 1: + df[column] = all[0] + st.experimental_rerun() + + else: + df.fillna("empty", inplace=True) + st.write(f"If all cells are correctly filled in click twice on the update button") + cell_style = {"background-color": "#ffa478"} + builder = GridOptionsBuilder.from_dataframe(df) + builder.configure_columns(columns_to_adapt,editable=True,cellEditor="agSelectCellEditor",cellEditorParams={"values": all},cellStyle=cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + go = builder.build() + grid_return = AgGrid(df,gridOptions=go,update_mode=GridUpdateMode.MANUAL,data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + return df + +def convert_df(df): + return df.to_csv(index=False).encode("utf-8") + +# function check_df_for_ontology_terms +# checks if the dataframe contains ontology terms + +def check_df_for_ontology_terms(df, columns_to_check, column_ontology_dict): + clear_columns = [] + for i in columns_to_check: + name = (i.split('[')[-1].split(']')[0]).replace(' ', '_') + name = 'all_' + name + '_elements' + #if the column is an ontology column + if name in column_ontology_dict.keys(): + onto_elements = column_ontology_dict[name] + elements = df[i].unique() + elements = [i for i in elements if i is not np.nan] + # check if elements are all in onto_elements + # if not, return the elements that are not in the ontology + if not set(elements).issubset(set(onto_elements)): + not_in_onto = set(elements) - set(onto_elements) + st.error(f'The following elements are not in the ontology: {not_in_onto}') + clear_columns.append(i) + elif set(elements).issubset(set(onto_elements)) and len(elements) >= 1: + st.success(f'The column {i} contains only ontology terms') + if i == 'characteristics[age]': + if not check_age_format(df, 'characteristics[age]'): + st.error(f'The age format is not correct. Please use the following format: 1Y 2M 3D') + clear_columns.append(i) + if i == 'characteristics[sex]': + uniques = np.unique(df[i].values()) + accepted = ['M', 'F', 'unknown'] + # check if uniques contain value that is not in accepted + if not set(uniques).issubset(set(accepted)): + not_in_onto = set(uniques) - set(accepted) + st.error(f'{not_in_onto} are not accepted in the characteristics[sex] column. Please use M, F or unknown') + clear_columns.append(i) + + # if there are columns that are not in the ontology, ask if the user wants to clear them + if len(clear_columns) >= 1: + st.error(f'The following columns contain elements that are not in the ontology: {clear_columns}') + st.write('Do you want to clear these columns?') + y = st.checkbox("Yes") + n = st.checkbox("No") + if y: + for i in clear_columns: + df[i] = np.nan + st.success(f'Column {i} has been cleared') + +def check_age_format(df, column): + """ + Check if the data in a column in a pandas dataframe follows the age formatting of Y M D. + If a range, this should be formatted as e.g. 48Y-84Y. + Parameters: + df (pandas.DataFrame): The pandas dataframe to check. + column (str): The name of the column to check. + + + Returns: + tuple: (bool, list) where bool indicates if all data in the column follows the age formatting + and list contains the wrong parts (if any). + """ + wrong_parts = [] + for index, row in df.iterrows(): + if row[column] not in ["", "empty", "None", "Not available"]: + if not re.match(r"^(\s*\d+\s*Y)?(\s*\d+\s*M)?(\s*\d+\s*D)?(|\s*-\s*\d+\s*Y)?(|\s*-\s*\d+\s*M)?(|\s*-\s*\d+\s*D)?(/)?(|\s*\d+\s*Y)?(|\s*\d+\s*M)?(|\s*\d+\s*D)?$", str(row[column])): + wrong_parts.append(row[column]) + return False if wrong_parts else True, wrong_parts + +def convert_df(df): + """This function requires a dataframe and sorts its columns as source name - characteristics - others - comment. + Leading and trailing whitespaces are removed from all columns + It then converts the dataframe to a tsv file and downloads it + It also adds an comment[tool metadata] to indicate it was built with lesSDRF and ontology versioning""" + df["comment[tool metadata]"] = "lesSDRF v0.1.0" + #sort dataframe so that "source name" is the first column + cols = df.columns.tolist() + #get all elements from the list that start with "characteristic" and sort them alphabetically + characteristic_cols = sorted([i for i in cols if i.startswith("characteristic")]) + #first elements in characteric_cols should always be characteristics[organism] characteristics[organism part] + if "characteristics[organism]" in characteristic_cols: + characteristic_cols.remove("characteristics[organism]") + characteristic_cols.insert(0, "characteristics[organism]") + if "characteristics[organism part]" in characteristic_cols: + characteristic_cols.remove("characteristics[organism part]") + characteristic_cols.insert(1, "characteristics[organism part]") + comment_cols = sorted([i for i in cols if i.startswith("comment")]) + factor_value_cols = sorted([i for i in cols if i.startswith("factor")]) + #get all columns that don't start with "characteristic" or "comment" + other_cols = [i for i in cols if i not in characteristic_cols and i not in comment_cols and i not in factor_value_cols and i not in ["source name"]] + #reorder the columns + new_cols = ["source name"] + characteristic_cols + other_cols + comment_cols + factor_value_cols + df = df[new_cols] + #if a column name contains _ followed by a number, remove the underscore and the number + df.columns = [re.sub(r"(_\d+)", "", i) for i in df.columns] + #remove leading and trailing whitespaces from all columns + df = df.apply(lambda x: x.str.strip() if x.dtype == "object" else x) + return df.to_csv(index=False, sep="\t").encode("utf-8") + + + +def autocomplete_species_search(taxum_list, search_term): + col1, col2 = st.columns(2) + if (search_term != "") and (search_term != None): + # Use the filter method to dynamically filter the list of options + filtered_options = list(filter(lambda x: search_term.lower() in x.lower(), taxum_list)) + exact_match = list(filter(lambda x: search_term.lower() == x.lower(), taxum_list)) + if exact_match: + with col1: + st.write(f"An exact match was found: **{exact_match[0]}**") + with col2: + use_exact_match = st.checkbox("Use exact match", key=f"exact_{search_term}") + if use_exact_match: + return exact_match[0] + # if length is between 0 and 500, display the options + if len(filtered_options) > 0 and len(filtered_options) < 500: + with col1: + selected_options = st.multiselect("Some options closely matching your search time could be found", filtered_options) + # Display the selected options + with col2: + if selected_options: + st.write("You selected:", selected_options) + use_options = st.checkbox("Use selected options", key=f"selected_{search_term}") + if use_options: + return selected_options + if len(filtered_options) > 500: + st.write("Too many closely related options to display (>500). Please refine your search.") + if len(filtered_options) == 0: + st.write("No options found. Please refine your search.") \ No newline at end of file diff --git a/.history/ParsingModule_20240927140744.py b/.history/ParsingModule_20240927140744.py new file mode 100644 index 0000000..9f8c526 --- /dev/null +++ b/.history/ParsingModule_20240927140744.py @@ -0,0 +1,417 @@ +import pronto +from pronto import Ontology +from collections import defaultdict +import json +import gzip +import pickle +import streamlit as st +import numpy as np +import pandas as pd +import re +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode +from streamlit_tree_select import tree_select + +def help(): + """This module contains all parsable functions necessary to build the SDRF GUI""" + print("This module contains all parsable functions necessary to build the SDRF GUI") + print( + "The get_json_subclasses function returns a nested dictionary of all subclasses of a given term in a json ontology" + ) + print( + "The get_obo_subclasses function returns a nested dictionary of all subclasses of a given term in an obo ontology" + ) + print("The flatten function returns a list of all values in a nested dictionary") + print( + "The transform_nested_dict_to_tree function returns a list of dictionaries that can be used to build a tree in streamlit" + ) + print( + "The store_as_gzipped_json function stores a dictionary/list as a gzipped json file" + ) + print( + "The open_gzipped_json function opens a gzipped json file and returns the dictionary/list" + ) + + +def get_json_subclasses(ontology, term_id, term_label, d, nodes_dict=None, data=None): + """This function takes the path to the ontology file in json format, the desired term id from the root node (e.g. http://www.ebi.ac.uk/efo/EFO_0000635) and the term label (e.g. 'organism part') + and returns a nested dictionary of all subclasses of the given term. + """ + if nodes_dict is None: # load the json file only once + with open(ontology) as f: + data = json.load(f) + nodes_dict = { + node["id"]: node["lbl"] + for node in data["graphs"][0]["nodes"] + if all(key in node for key in ["id", "lbl"]) + } + + if term_id not in nodes_dict: + return f"{term_id} node not in ontology" # node not found in ontology, return early + + if term_label not in d: + d[term_label] = {} # add the parent to the dictionary + + for term in data["graphs"][0]["edges"]: # iterate through the edges + if (term["obj"] == term_id) and ( + term["pred"] in ["http://purl.obolibrary.org/obo/BFO_0000050", "is_a"] + ): + parent = term["sub"] + if parent == "http://purl.obolibrary.org/obo/MONDO_0011876": + continue # skip MONDO_0011876 + parent_label = nodes_dict.get(parent) + if parent_label is not None: + if parent_label in d: + d[term_label][parent_label] = d[parent_label] + del d[parent_label] + else: + d[term_label][parent_label] = {} + get_json_subclasses( + ontology, parent, parent_label, d[term_label], nodes_dict, data + ) + + return d + + +def remove_duplicate_values(d): + for k, v in d.items(): + if isinstance(v, dict): + remove_duplicate_values(v) + if k in v: + del v[k] + + return d + + +def get_obo_subclasses(onto, obo_id, obo_label, d=None, distance=1): + if d is None: + d = defaultdict(dict) + """This function is built on pronto. + It takes the path to the ontology file in obo format, the desired term id from the root node (e.g. MS:1000031) and the term label (e.g. 'instrument model') + and returns a nested dictionary of all subclasses of the given term. To only get the direct subclasses, the distance is set to 1 + """ + + subclasses = list(onto[obo_id].subclasses(distance=1)) + if len(subclasses) > 1: + d[obo_label] = {} + for i in subclasses[1:]: + obo_id = i.id + obo_label = i.name + d[obo_label] = get_obo_subclasses( + onto, obo_id, obo_label, defaultdict(dict), distance=1 + ) + else: + d = {} + + d = remove_dupcliate_values(d) + return d + + +def flatten(d): + """This function takes a nested dictionary and returns all unique elements in the dictionary as a list""" + if not isinstance(d, dict): + print("Input is not a dictionary") + items = [] + for k, v in d.items(): # iterate through the dictionary + items.append(k) # add the key to the list + if isinstance( + v, dict + ): # if the value is a dictionary, call the function recursively + items.extend(flatten(v)) + else: + items.append(v) + items = list(set(items)) + return items + + +def transform_nested_dict_to_tree(d, parent_label=None, parent_value=None): + """This function takes a nested dictionary and returns a tree like dictionary that can be used in streamlit streamlit_tree_select""" + if not isinstance(d, dict): + print("Input is not a dictionary") + result = [] + for key, value in d.items(): + label = key + if parent_label: + label = f"{parent_label} , {key}" + children = [] + if value: + children = transform_nested_dict_to_tree(value, label, key) + if children: + result.append({"label": key, "value": label, "children": children}) + else: + result.append({"label": key, "value": label}) + return result + + +def store_as_gzipped_json(data, filename): + """ "Given a datatype to store and the filename, this function stores the data as a gzipped json file in .\\data""" + path = ( + ".\\data\\" + + filename + + ".json.gz" + ) + with gzip.open(path, "wt") as f: + json.dump(data, f) + return f"Stored {filename} as gzipped json" + + +def open_gzipped_json(filename): + """ "Given a filename, this function opens the data that was stored as a gzipped json in .\\data""" + path = ( + ".\\data\\" + + filename + + ".json.gz" + ) + with gzip.open(path, "rt") as f: + data = json.load(f) + return data + +def fill_in_from_list(df, column, values_list=None, multiple_in_one=False): + """provide dataframe, column and optional a list of values. + reates an editable dataframe in which only that column can be modified possibly with the values from the list + If the list is empty, the column is freely editable + If the list contains only one value, the column is filled with that value + If the list contains more than one value, a dropdown menu is created with the values from the list + If multiple_in_one is True, multiple columns are created with the same dropdown menu""" + columns_to_adapt = [column] + df.fillna("empty", inplace=True) + cell_style = {"background-color": "#ffa478"} + builder = GridOptionsBuilder.from_dataframe(df) + + if values_list and (len(values_list)==1): # if there is only one value, fill in the column with that value + df[column] = values_list[0] + df.replace("empty", np.nan, inplace=True) + elif values_list and (len(values_list)>1): # if there is a list of values, add a dropdown menu to the column + # add '' to the beginning of values list so it starts with an empty input + values_list.insert(0, "") + values_list.insert(1, "NA") #add NA + if multiple_in_one: # add columns based on number of values in values_list + for i in range(len(values_list)-1): + df[f"{column}_{i}"] = "" + columns_to_adapt.append(f"{column}_{i}") + builder.configure_columns(columns_to_adapt, editable=True, cellEditor="agSelectCellEditor", cellEditorParams={"values": values_list}, cellStyle = cell_style) + else: # if not multiple_in_one, just add the column + builder.configure_column(column,editable=True,cellEditor="agSelectCellEditor",cellEditorParams={"values": values_list}, cellStyle = cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + gridOptions = builder.build() + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + + elif values_list is None: # if there is no list of values, make the column editable + builder.configure_column(column, editable=True, cellStyle = cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + gridOptions = builder.build() + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + return df + +def multiple_ontology_tree(column, element_list, nodes, df, multiple_in_one = False): + """ + This function asks the column name, all the elements for the drop down menu and the nodes for the tree. + It asks for the number of inputs and then creates the input dataframe with in-cell drop down menus with the chosen values. + """ + #get index of column based on name + if column not in df.columns: + df[column] = np.nan + index = df.columns.get_loc(column) + col1, col2, col3 = st.columns(3) + columns_to_adapt = [column] + with col1: + multiple = st.radio(f"Are there multiple {column} in your data?", ("No", "Yes")) + if multiple == "Yes": + with col2: + number = st.number_input( + f"How many different {column} are in your data?", + min_value=0, + step=1) + with col3: + if multiple_in_one: + multiple_in_one_sel = st.radio(f"Are there multiple {column} within one sample?", ("No", "Yes")) + if multiple_in_one_sel == "Yes": + for i in range(number-1): + # add column next to the original column if it is not already there + if f"{column}_{i+1}" not in df.columns: + df.insert(index+1, f"{column}_{i+1}", "empty") + columns_to_adapt.append(f"{column}_{i+1}") + else: + number = 1 + + with st.form("Select here your ontology terms using the autocomplete function or the ontology-based tree menu", clear_on_submit=True): + col4, col5 = st.columns(2) + with col4: + # selectbox with search option + element_list.append(" ") + element_list = set(element_list) + return_search = st.multiselect( + "Select your matching ontology term using this autocomplete function", + element_list, + max_selections=number, + ) + + with col5: + st.write("Or follow the ontology based drop down menu below") + return_select = tree_select( + nodes, no_cascade=True, expand_on_click=True, check_model="leaf" + ) + all = return_search + return_select["checked"] + all = [i.split(',')[-1] for i in all if i is not None] + if (len(all) >= 1) & (len(all) != number): + st.error(f"You need to select a total of {number}.") + s = st.form_submit_button("Submit selection") + if s: + st.write(f"Selection contains: {all}") + + if s & (len(all) == 1) & number == 1: + df[column] = all[0] + st.experimental_rerun() + + else: + df.fillna("empty", inplace=True) + st.write(f"If all cells are correctly filled in click twice on the update button") + cell_style = {"background-color": "#ffa478"} + builder = GridOptionsBuilder.from_dataframe(df) + builder.configure_columns(columns_to_adapt,editable=True,cellEditor="agSelectCellEditor",cellEditorParams={"values": all},cellStyle=cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + go = builder.build() + grid_return = AgGrid(df,gridOptions=go,update_mode=GridUpdateMode.MANUAL,data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + return df + +def convert_df(df): + return df.to_csv(index=False).encode("utf-8") + +# function check_df_for_ontology_terms +# checks if the dataframe contains ontology terms + +def check_df_for_ontology_terms(df, columns_to_check, column_ontology_dict): + clear_columns = [] + for i in columns_to_check: + name = (i.split('[')[-1].split(']')[0]).replace(' ', '_') + name = 'all_' + name + '_elements' + #if the column is an ontology column + if name in column_ontology_dict.keys(): + onto_elements = column_ontology_dict[name] + elements = df[i].unique() + elements = [i for i in elements if i is not np.nan] + # check if elements are all in onto_elements + # if not, return the elements that are not in the ontology + if not set(elements).issubset(set(onto_elements)): + not_in_onto = set(elements) - set(onto_elements) + st.error(f'The following elements are not in the ontology: {not_in_onto}') + clear_columns.append(i) + elif set(elements).issubset(set(onto_elements)) and len(elements) >= 1: + st.success(f'The column {i} contains only ontology terms') + if i == 'characteristics[age]': + if not check_age_format(df, 'characteristics[age]'): + st.error(f'The age format is not correct. Please use the following format: 1Y 2M 3D') + clear_columns.append(i) + if i == 'characteristics[sex]': + uniques = np.unique(df[i].values()) + accepted = ['M', 'F', 'unknown'] + # check if uniques contain value that is not in accepted + if not set(uniques).issubset(set(accepted)): + not_in_onto = set(uniques) - set(accepted) + st.error(f'{not_in_onto} are not accepted in the characteristics[sex] column. Please use M, F or unknown') + clear_columns.append(i) + + # if there are columns that are not in the ontology, ask if the user wants to clear them + if len(clear_columns) >= 1: + st.error(f'The following columns contain elements that are not in the ontology: {clear_columns}') + st.write('Do you want to clear these columns?') + y = st.checkbox("Yes") + n = st.checkbox("No") + if y: + for i in clear_columns: + df[i] = np.nan + st.success(f'Column {i} has been cleared') + +def check_age_format(df, column): + """ + Check if the data in a column in a pandas dataframe follows the age formatting of Y M D. + If a range, this should be formatted as e.g. 48Y-84Y. + Parameters: + df (pandas.DataFrame): The pandas dataframe to check. + column (str): The name of the column to check. + + + Returns: + tuple: (bool, list) where bool indicates if all data in the column follows the age formatting + and list contains the wrong parts (if any). + """ + wrong_parts = [] + for index, row in df.iterrows(): + if row[column] not in ["", "empty", "None", "Not available"]: + if not re.match(r"^(\s*\d+\s*Y)?(\s*\d+\s*M)?(\s*\d+\s*D)?(|\s*-\s*\d+\s*Y)?(|\s*-\s*\d+\s*M)?(|\s*-\s*\d+\s*D)?(/)?(|\s*\d+\s*Y)?(|\s*\d+\s*M)?(|\s*\d+\s*D)?$", str(row[column])): + wrong_parts.append(row[column]) + return False if wrong_parts else True, wrong_parts + +def convert_df(df): + """This function requires a dataframe and sorts its columns as source name - characteristics - others - comment. + Leading and trailing whitespaces are removed from all columns + It then converts the dataframe to a tsv file and downloads it + It also adds an comment[tool metadata] to indicate it was built with lesSDRF and ontology versioning""" + df["comment[tool metadata]"] = "lesSDRF v0.1.0" + #sort dataframe so that "source name" is the first column + cols = df.columns.tolist() + #get all elements from the list that start with "characteristic" and sort them alphabetically + characteristic_cols = sorted([i for i in cols if i.startswith("characteristic")]) + #first elements in characteric_cols should always be characteristics[organism] characteristics[organism part] + if "characteristics[organism]" in characteristic_cols: + characteristic_cols.remove("characteristics[organism]") + characteristic_cols.insert(0, "characteristics[organism]") + if "characteristics[organism part]" in characteristic_cols: + characteristic_cols.remove("characteristics[organism part]") + characteristic_cols.insert(1, "characteristics[organism part]") + comment_cols = sorted([i for i in cols if i.startswith("comment")]) + factor_value_cols = sorted([i for i in cols if i.startswith("factor")]) + #get all columns that don't start with "characteristic" or "comment" + other_cols = [i for i in cols if i not in characteristic_cols and i not in comment_cols and i not in factor_value_cols and i not in ["source name"]] + #reorder the columns + new_cols = ["source name"] + characteristic_cols + other_cols + comment_cols + factor_value_cols + df = df[new_cols] + #if a column name contains _ followed by a number, remove the underscore and the number + df.columns = [re.sub(r"(_\d+)", "", i) for i in df.columns] + #remove leading and trailing whitespaces from all columns + df = df.apply(lambda x: x.str.strip() if x.dtype == "object" else x) + return df.to_csv(index=False, sep="\t").encode("utf-8") + + + +def autocomplete_species_search(taxum_list, search_term): + col1, col2 = st.columns(2) + if (search_term != "") and (search_term != None): + # Use the filter method to dynamically filter the list of options + filtered_options = list(filter(lambda x: search_term.lower() in x.lower(), taxum_list)) + exact_match = list(filter(lambda x: search_term.lower() == x.lower(), taxum_list)) + if exact_match: + with col1: + st.write(f"An exact match was found: **{exact_match[0]}**") + with col2: + use_exact_match = st.checkbox("Use exact match", key=f"exact_{search_term}") + if use_exact_match: + return exact_match[0] + # if length is between 0 and 500, display the options + if len(filtered_options) > 0 and len(filtered_options) < 500: + with col1: + selected_options = st.multiselect("Some options closely matching your search time could be found", filtered_options) + # Display the selected options + with col2: + if selected_options: + st.write("You selected:", selected_options) + use_options = st.checkbox("Use selected options", key=f"selected_{search_term}") + if use_options: + return selected_options + if len(filtered_options) > 500: + st.write("Too many closely related options to display (>500). Please refine your search.") + if len(filtered_options) == 0: + st.write("No options found. Please refine your search.") \ No newline at end of file diff --git a/.history/ParsingModule_20240927140942.py b/.history/ParsingModule_20240927140942.py new file mode 100644 index 0000000..9f8c526 --- /dev/null +++ b/.history/ParsingModule_20240927140942.py @@ -0,0 +1,417 @@ +import pronto +from pronto import Ontology +from collections import defaultdict +import json +import gzip +import pickle +import streamlit as st +import numpy as np +import pandas as pd +import re +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode +from streamlit_tree_select import tree_select + +def help(): + """This module contains all parsable functions necessary to build the SDRF GUI""" + print("This module contains all parsable functions necessary to build the SDRF GUI") + print( + "The get_json_subclasses function returns a nested dictionary of all subclasses of a given term in a json ontology" + ) + print( + "The get_obo_subclasses function returns a nested dictionary of all subclasses of a given term in an obo ontology" + ) + print("The flatten function returns a list of all values in a nested dictionary") + print( + "The transform_nested_dict_to_tree function returns a list of dictionaries that can be used to build a tree in streamlit" + ) + print( + "The store_as_gzipped_json function stores a dictionary/list as a gzipped json file" + ) + print( + "The open_gzipped_json function opens a gzipped json file and returns the dictionary/list" + ) + + +def get_json_subclasses(ontology, term_id, term_label, d, nodes_dict=None, data=None): + """This function takes the path to the ontology file in json format, the desired term id from the root node (e.g. http://www.ebi.ac.uk/efo/EFO_0000635) and the term label (e.g. 'organism part') + and returns a nested dictionary of all subclasses of the given term. + """ + if nodes_dict is None: # load the json file only once + with open(ontology) as f: + data = json.load(f) + nodes_dict = { + node["id"]: node["lbl"] + for node in data["graphs"][0]["nodes"] + if all(key in node for key in ["id", "lbl"]) + } + + if term_id not in nodes_dict: + return f"{term_id} node not in ontology" # node not found in ontology, return early + + if term_label not in d: + d[term_label] = {} # add the parent to the dictionary + + for term in data["graphs"][0]["edges"]: # iterate through the edges + if (term["obj"] == term_id) and ( + term["pred"] in ["http://purl.obolibrary.org/obo/BFO_0000050", "is_a"] + ): + parent = term["sub"] + if parent == "http://purl.obolibrary.org/obo/MONDO_0011876": + continue # skip MONDO_0011876 + parent_label = nodes_dict.get(parent) + if parent_label is not None: + if parent_label in d: + d[term_label][parent_label] = d[parent_label] + del d[parent_label] + else: + d[term_label][parent_label] = {} + get_json_subclasses( + ontology, parent, parent_label, d[term_label], nodes_dict, data + ) + + return d + + +def remove_duplicate_values(d): + for k, v in d.items(): + if isinstance(v, dict): + remove_duplicate_values(v) + if k in v: + del v[k] + + return d + + +def get_obo_subclasses(onto, obo_id, obo_label, d=None, distance=1): + if d is None: + d = defaultdict(dict) + """This function is built on pronto. + It takes the path to the ontology file in obo format, the desired term id from the root node (e.g. MS:1000031) and the term label (e.g. 'instrument model') + and returns a nested dictionary of all subclasses of the given term. To only get the direct subclasses, the distance is set to 1 + """ + + subclasses = list(onto[obo_id].subclasses(distance=1)) + if len(subclasses) > 1: + d[obo_label] = {} + for i in subclasses[1:]: + obo_id = i.id + obo_label = i.name + d[obo_label] = get_obo_subclasses( + onto, obo_id, obo_label, defaultdict(dict), distance=1 + ) + else: + d = {} + + d = remove_dupcliate_values(d) + return d + + +def flatten(d): + """This function takes a nested dictionary and returns all unique elements in the dictionary as a list""" + if not isinstance(d, dict): + print("Input is not a dictionary") + items = [] + for k, v in d.items(): # iterate through the dictionary + items.append(k) # add the key to the list + if isinstance( + v, dict + ): # if the value is a dictionary, call the function recursively + items.extend(flatten(v)) + else: + items.append(v) + items = list(set(items)) + return items + + +def transform_nested_dict_to_tree(d, parent_label=None, parent_value=None): + """This function takes a nested dictionary and returns a tree like dictionary that can be used in streamlit streamlit_tree_select""" + if not isinstance(d, dict): + print("Input is not a dictionary") + result = [] + for key, value in d.items(): + label = key + if parent_label: + label = f"{parent_label} , {key}" + children = [] + if value: + children = transform_nested_dict_to_tree(value, label, key) + if children: + result.append({"label": key, "value": label, "children": children}) + else: + result.append({"label": key, "value": label}) + return result + + +def store_as_gzipped_json(data, filename): + """ "Given a datatype to store and the filename, this function stores the data as a gzipped json file in .\\data""" + path = ( + ".\\data\\" + + filename + + ".json.gz" + ) + with gzip.open(path, "wt") as f: + json.dump(data, f) + return f"Stored {filename} as gzipped json" + + +def open_gzipped_json(filename): + """ "Given a filename, this function opens the data that was stored as a gzipped json in .\\data""" + path = ( + ".\\data\\" + + filename + + ".json.gz" + ) + with gzip.open(path, "rt") as f: + data = json.load(f) + return data + +def fill_in_from_list(df, column, values_list=None, multiple_in_one=False): + """provide dataframe, column and optional a list of values. + reates an editable dataframe in which only that column can be modified possibly with the values from the list + If the list is empty, the column is freely editable + If the list contains only one value, the column is filled with that value + If the list contains more than one value, a dropdown menu is created with the values from the list + If multiple_in_one is True, multiple columns are created with the same dropdown menu""" + columns_to_adapt = [column] + df.fillna("empty", inplace=True) + cell_style = {"background-color": "#ffa478"} + builder = GridOptionsBuilder.from_dataframe(df) + + if values_list and (len(values_list)==1): # if there is only one value, fill in the column with that value + df[column] = values_list[0] + df.replace("empty", np.nan, inplace=True) + elif values_list and (len(values_list)>1): # if there is a list of values, add a dropdown menu to the column + # add '' to the beginning of values list so it starts with an empty input + values_list.insert(0, "") + values_list.insert(1, "NA") #add NA + if multiple_in_one: # add columns based on number of values in values_list + for i in range(len(values_list)-1): + df[f"{column}_{i}"] = "" + columns_to_adapt.append(f"{column}_{i}") + builder.configure_columns(columns_to_adapt, editable=True, cellEditor="agSelectCellEditor", cellEditorParams={"values": values_list}, cellStyle = cell_style) + else: # if not multiple_in_one, just add the column + builder.configure_column(column,editable=True,cellEditor="agSelectCellEditor",cellEditorParams={"values": values_list}, cellStyle = cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + gridOptions = builder.build() + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + + elif values_list is None: # if there is no list of values, make the column editable + builder.configure_column(column, editable=True, cellStyle = cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + gridOptions = builder.build() + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + return df + +def multiple_ontology_tree(column, element_list, nodes, df, multiple_in_one = False): + """ + This function asks the column name, all the elements for the drop down menu and the nodes for the tree. + It asks for the number of inputs and then creates the input dataframe with in-cell drop down menus with the chosen values. + """ + #get index of column based on name + if column not in df.columns: + df[column] = np.nan + index = df.columns.get_loc(column) + col1, col2, col3 = st.columns(3) + columns_to_adapt = [column] + with col1: + multiple = st.radio(f"Are there multiple {column} in your data?", ("No", "Yes")) + if multiple == "Yes": + with col2: + number = st.number_input( + f"How many different {column} are in your data?", + min_value=0, + step=1) + with col3: + if multiple_in_one: + multiple_in_one_sel = st.radio(f"Are there multiple {column} within one sample?", ("No", "Yes")) + if multiple_in_one_sel == "Yes": + for i in range(number-1): + # add column next to the original column if it is not already there + if f"{column}_{i+1}" not in df.columns: + df.insert(index+1, f"{column}_{i+1}", "empty") + columns_to_adapt.append(f"{column}_{i+1}") + else: + number = 1 + + with st.form("Select here your ontology terms using the autocomplete function or the ontology-based tree menu", clear_on_submit=True): + col4, col5 = st.columns(2) + with col4: + # selectbox with search option + element_list.append(" ") + element_list = set(element_list) + return_search = st.multiselect( + "Select your matching ontology term using this autocomplete function", + element_list, + max_selections=number, + ) + + with col5: + st.write("Or follow the ontology based drop down menu below") + return_select = tree_select( + nodes, no_cascade=True, expand_on_click=True, check_model="leaf" + ) + all = return_search + return_select["checked"] + all = [i.split(',')[-1] for i in all if i is not None] + if (len(all) >= 1) & (len(all) != number): + st.error(f"You need to select a total of {number}.") + s = st.form_submit_button("Submit selection") + if s: + st.write(f"Selection contains: {all}") + + if s & (len(all) == 1) & number == 1: + df[column] = all[0] + st.experimental_rerun() + + else: + df.fillna("empty", inplace=True) + st.write(f"If all cells are correctly filled in click twice on the update button") + cell_style = {"background-color": "#ffa478"} + builder = GridOptionsBuilder.from_dataframe(df) + builder.configure_columns(columns_to_adapt,editable=True,cellEditor="agSelectCellEditor",cellEditorParams={"values": all},cellStyle=cell_style) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + go = builder.build() + grid_return = AgGrid(df,gridOptions=go,update_mode=GridUpdateMode.MANUAL,data_return_mode=DataReturnMode.AS_INPUT) + df = grid_return["data"] + df.replace("empty", np.nan, inplace=True) + return df + +def convert_df(df): + return df.to_csv(index=False).encode("utf-8") + +# function check_df_for_ontology_terms +# checks if the dataframe contains ontology terms + +def check_df_for_ontology_terms(df, columns_to_check, column_ontology_dict): + clear_columns = [] + for i in columns_to_check: + name = (i.split('[')[-1].split(']')[0]).replace(' ', '_') + name = 'all_' + name + '_elements' + #if the column is an ontology column + if name in column_ontology_dict.keys(): + onto_elements = column_ontology_dict[name] + elements = df[i].unique() + elements = [i for i in elements if i is not np.nan] + # check if elements are all in onto_elements + # if not, return the elements that are not in the ontology + if not set(elements).issubset(set(onto_elements)): + not_in_onto = set(elements) - set(onto_elements) + st.error(f'The following elements are not in the ontology: {not_in_onto}') + clear_columns.append(i) + elif set(elements).issubset(set(onto_elements)) and len(elements) >= 1: + st.success(f'The column {i} contains only ontology terms') + if i == 'characteristics[age]': + if not check_age_format(df, 'characteristics[age]'): + st.error(f'The age format is not correct. Please use the following format: 1Y 2M 3D') + clear_columns.append(i) + if i == 'characteristics[sex]': + uniques = np.unique(df[i].values()) + accepted = ['M', 'F', 'unknown'] + # check if uniques contain value that is not in accepted + if not set(uniques).issubset(set(accepted)): + not_in_onto = set(uniques) - set(accepted) + st.error(f'{not_in_onto} are not accepted in the characteristics[sex] column. Please use M, F or unknown') + clear_columns.append(i) + + # if there are columns that are not in the ontology, ask if the user wants to clear them + if len(clear_columns) >= 1: + st.error(f'The following columns contain elements that are not in the ontology: {clear_columns}') + st.write('Do you want to clear these columns?') + y = st.checkbox("Yes") + n = st.checkbox("No") + if y: + for i in clear_columns: + df[i] = np.nan + st.success(f'Column {i} has been cleared') + +def check_age_format(df, column): + """ + Check if the data in a column in a pandas dataframe follows the age formatting of Y M D. + If a range, this should be formatted as e.g. 48Y-84Y. + Parameters: + df (pandas.DataFrame): The pandas dataframe to check. + column (str): The name of the column to check. + + + Returns: + tuple: (bool, list) where bool indicates if all data in the column follows the age formatting + and list contains the wrong parts (if any). + """ + wrong_parts = [] + for index, row in df.iterrows(): + if row[column] not in ["", "empty", "None", "Not available"]: + if not re.match(r"^(\s*\d+\s*Y)?(\s*\d+\s*M)?(\s*\d+\s*D)?(|\s*-\s*\d+\s*Y)?(|\s*-\s*\d+\s*M)?(|\s*-\s*\d+\s*D)?(/)?(|\s*\d+\s*Y)?(|\s*\d+\s*M)?(|\s*\d+\s*D)?$", str(row[column])): + wrong_parts.append(row[column]) + return False if wrong_parts else True, wrong_parts + +def convert_df(df): + """This function requires a dataframe and sorts its columns as source name - characteristics - others - comment. + Leading and trailing whitespaces are removed from all columns + It then converts the dataframe to a tsv file and downloads it + It also adds an comment[tool metadata] to indicate it was built with lesSDRF and ontology versioning""" + df["comment[tool metadata]"] = "lesSDRF v0.1.0" + #sort dataframe so that "source name" is the first column + cols = df.columns.tolist() + #get all elements from the list that start with "characteristic" and sort them alphabetically + characteristic_cols = sorted([i for i in cols if i.startswith("characteristic")]) + #first elements in characteric_cols should always be characteristics[organism] characteristics[organism part] + if "characteristics[organism]" in characteristic_cols: + characteristic_cols.remove("characteristics[organism]") + characteristic_cols.insert(0, "characteristics[organism]") + if "characteristics[organism part]" in characteristic_cols: + characteristic_cols.remove("characteristics[organism part]") + characteristic_cols.insert(1, "characteristics[organism part]") + comment_cols = sorted([i for i in cols if i.startswith("comment")]) + factor_value_cols = sorted([i for i in cols if i.startswith("factor")]) + #get all columns that don't start with "characteristic" or "comment" + other_cols = [i for i in cols if i not in characteristic_cols and i not in comment_cols and i not in factor_value_cols and i not in ["source name"]] + #reorder the columns + new_cols = ["source name"] + characteristic_cols + other_cols + comment_cols + factor_value_cols + df = df[new_cols] + #if a column name contains _ followed by a number, remove the underscore and the number + df.columns = [re.sub(r"(_\d+)", "", i) for i in df.columns] + #remove leading and trailing whitespaces from all columns + df = df.apply(lambda x: x.str.strip() if x.dtype == "object" else x) + return df.to_csv(index=False, sep="\t").encode("utf-8") + + + +def autocomplete_species_search(taxum_list, search_term): + col1, col2 = st.columns(2) + if (search_term != "") and (search_term != None): + # Use the filter method to dynamically filter the list of options + filtered_options = list(filter(lambda x: search_term.lower() in x.lower(), taxum_list)) + exact_match = list(filter(lambda x: search_term.lower() == x.lower(), taxum_list)) + if exact_match: + with col1: + st.write(f"An exact match was found: **{exact_match[0]}**") + with col2: + use_exact_match = st.checkbox("Use exact match", key=f"exact_{search_term}") + if use_exact_match: + return exact_match[0] + # if length is between 0 and 500, display the options + if len(filtered_options) > 0 and len(filtered_options) < 500: + with col1: + selected_options = st.multiselect("Some options closely matching your search time could be found", filtered_options) + # Display the selected options + with col2: + if selected_options: + st.write("You selected:", selected_options) + use_options = st.checkbox("Use selected options", key=f"selected_{search_term}") + if use_options: + return selected_options + if len(filtered_options) > 500: + st.write("Too many closely related options to display (>500). Please refine your search.") + if len(filtered_options) == 0: + st.write("No options found. Please refine your search.") \ No newline at end of file diff --git a/.history/cleavage_list_20240927125037.json b/.history/cleavage_list_20240927125037.json new file mode 100644 index 0000000..9f49453 --- /dev/null +++ b/.history/cleavage_list_20240927125037.json @@ -0,0 +1 @@ +["NoEnzyme", "NT=2-iodobenzoate; CS='(?<=W)'", "NT=Arg-C; CS='(?<=R)(?\\!P)'", "NT=Asp-N; CS='(?=[BD])'", "NT=Asp-N ambic; CS='(?=[DE])'", "NT=CNBr; CS='(?<=M)'", "NT=Chymotrypsin; CS='(?<=[FYWL])(?\\!P)'", "NT=Formic acid; CS='((?<=D))|((?=D))'", "NT=Lys-C; CS='(?<=K)(?\\!P)'", "NT=Lys-C/P; CS='(?<=K)'", "NT=PepsinA; CS='(?<=[FL])'", "NT=TrypChymo; CS='(?<=[FYWLKR])(?\\!P)'", "NT=Trypsin; CS='(?<=[KR])(?\\!P)'", "NT=Trypsin/P; CS='(?<=[KR])'", "NT=V8-DE; CS='(?<=[BDEZ])(?\\!P)'", "NT=V8-E; CS='(?<=[EZ])(?\\!P)'", "NT=glutamyl endopeptidase; CS='(?<=[^E]E)'", "NT=leukocyte elastase; CS='(?<=[ALIV])(?!P)'", "NT=proline endopeptidase; CS='(?<=[HKR]P)(?!P)']", "not available", "not applicable"] \ No newline at end of file diff --git a/.history/cleavage_list_20240927125416.json b/.history/cleavage_list_20240927125416.json new file mode 100644 index 0000000..549cdd6 --- /dev/null +++ b/.history/cleavage_list_20240927125416.json @@ -0,0 +1 @@ +["NoEnzyme", "NT=2-iodobenzoate", "NT=Arg-C", "NT=Asp-N", "NT=Asp-N ambic", "NT=CNBr", "NT=Formic acid", "NT=Lys-C/P", "NT=PepsinA", "NT=TrypChymo", "NT=Trypsin", "NT=Trypsin/P", "NT=V8-DE", "NT=V8-E", "NT=glutamyl endopeptidase", "NT=leukocyte elastase", "NT=proline endopeptidase", "not available", "not applicable"] \ No newline at end of file diff --git a/.history/pages/3_3. Required_columns_20240130104638.py b/.history/pages/3_3. Required_columns_20240130104638.py new file mode 100644 index 0000000..7628f62 --- /dev/null +++ b/.history/pages/3_3. Required_columns_20240130104638.py @@ -0,0 +1,803 @@ +import re +import warnings +warnings.filterwarnings("ignore") +import streamlit as st +import pandas as pd +import numpy as np +import json +import gzip +import ParsingModule +import os +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode +from streamlit_tree_select import tree_select +from PIL import Image +import base64 +import io + +st.set_page_config( + page_title="Required columns", + layout="wide", + page_icon="πŸ§ͺ", + menu_items={ + "Get help": "https://github.com/compomics/lesSDRF/issues", + "Report a bug": "https://github.com/compomics/lesSDRF/issues", + }, +) +def add_logo(logo_path, width, height): + """Read and return a resized logo""" + logo = Image.open(logo_path) + modified_logo = logo.resize((width, height)) + return modified_logo + +def get_base64_image(image): + img_buffer = io.BytesIO() + image.save(img_buffer, format="PNG") + img_str = base64.b64encode(img_buffer.getvalue()).decode() + return img_str + +my_logo = add_logo(logo_path="final_logo.png", width=149, height=58) + +st.markdown( + f""" + + """, + unsafe_allow_html=True, +) + +def update_session_state(df): + st.session_state["template_df"] = df + +@st.cache_data +def load_organism_data(): + #find dir one up from current dir + data_dir = os.path.dirname(os.path.dirname(__file__)) + folder_path = os.path.join(data_dir, "data") + data = {} + for filename in os.listdir(folder_path): + # only load the files containing the following names: archae, bacteria, eukaryota, virus, unclassified, other sequences + if re.search(r"archaea|bacteria|eukaryota|virus|unclassified|other_sequences", filename): + file_path = os.path.join(folder_path, filename) + if filename.endswith(".json.gz"): + try: + with gzip.open(file_path, "rb") as f: + file_data = json.load(f) + filename_key = filename.replace(".json.gz", "") + data[filename_key] = file_data + except gzip.BadGzipFile: + st.write(f"Error reading file {file_path}: not a gzipped file") + else: + st.write(f"Skipping file {file_path}: not a gzipped file") + else: + continue + return data + +def organism_selection(species): + lem = organism_data[f"all_{species}_elements"] + search_term = st.text_input(f"Search for an {species} species here", "") + ret = ParsingModule.autocomplete_species_search(lem, search_term) + if ret != None: + return ret + +# Define the default button color (you can adjust this as desired) +default_color = "#ff4b4b" + +# Define the button CSS styles +button_styles = f""" + background-color: white; + color: {default_color}; + border-radius: 20px; + padding: 10px 20px; + border: 1px solid {default_color}; + text-align: center; + text-decoration: none; + display: inline-block; + font-size: 16px; + margin: 4px 2px; + cursor: pointer; +""" +st.title("""3. Required columns""") +# if template_df is not in the session state, don't run all the code below +if "template_df" not in st.session_state: + st.error("Please fill in the template file in the Home page first", icon="🚨") + st.stop() +else: + template_df = st.session_state["template_df"] + with st.container(): + st.write("**This is your current SDRF file.**") + st.dataframe(template_df) + +data_dict = st.session_state["data_dict"] +#get all columns that are empty or contain only the word "empty" in template_df +empty_columns = [col for col in template_df.columns if template_df[col].isnull().all() or (template_df[col] == "empty").all()] +#remove columns from the list that have an underscore in the name(these are added because of multiple in one samples) +empty_columns = [col for col in empty_columns if "_" not in col] +empty_columns.append('undo column') +empty_columns.insert(0, 'start') + + + + +with st.sidebar: + selection = st.radio( + "The following columns are empty and required", + empty_columns, help="If a column you're looking for is not in this display, This means it is not empty. Click on the 'undo column' button and empty your column of interest." + ) + download = st.download_button("Press to download SDRF file",ParsingModule.convert_df(template_df), "intermediate_SDRF.sdrf.tsv", help="download your SDRF file") + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: + *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") + +if selection == 'start': + st.write("""In the sidebar, all the empty columns that are required for you SDRF file are listed. Select the one you want to annotate first. + When a column is filled in, it will disappear from the sidebar so you can keep track on which columns still require input. + When you want to reannotate a previously filled in column, you can do so by clicking on the **undo column** button in the sidebar. + """) + st.write("""Every page will start with your current SDRF file and at the bottom of the page there is a button to download the intermediate SDRF file""") + + + + + +if selection == "source name": + st.write( + """The source name is the unique sample name (it can be present multiple times if the same sample is used several times in the same dataset) eg. healthy_patient_1, diseased_patient_1 + If you did not add it using the previous mapping function, you can input it here manually.") + """ + ) + st.write( + "Type the correct source names in the corresponding column and **double click** *Update* when finished" + ) + template_df = ParsingModule.fill_in_from_list(template_df, "source name") + st.session_state["template_df"] = template_df + + +if selection == "assay name": + st.write( + """The assay name is a name for the run file, this has to be a uniqe value eg. run 1 - run 2 - run 3_fraction1. If you did not add it using the previous mapping function, you can input it here + manually.""" + ) + st.write( + "Type the correct assay names in the corresponding column and click Update twice when finished" + ) + template_df = ParsingModule.fill_in_from_list(template_df, "assay name") + st.session_state["template_df"] = template_df + +if selection == "technology type": + with st.form("Choose the technology type in your sample"): + tech_type = st.radio( + "Choose the technology type from these options:", + ( + "proteomic profiling by mass spectrometry", + "metabolomics profiling by mass spectrometry", + "other", + ), + ) + if st.form_submit_button("Submit"): + template_df["technology type"] = tech_type + st.session_state["template_df"] = template_df + +if selection == "characteristics[age]": + st.subheader("Input the ages of your samples using the Years Months Days format, e.g. 1Y 2M 3D. Age ranges should be formatted as e.g. 1Y-3Y") + multiple = st.selectbox(f"Are there multiple ages in your data?", ("","No", "Yes", "Not available"), help="If you select Not available, the column will be filled in with 'Not available'") + if multiple == "Yes": + template_df = ParsingModule.fill_in_from_list(template_df, "characteristics[age]") + is_valid, wrong_values = ParsingModule.check_age_format(template_df, "characteristics[age]") + if not is_valid: + st.error(f"The age column is not in the correct format. Wrong values: {', '.join(wrong_values)}") + st.stop() + else: + template_df.replace("empty", np.nan, inplace=True) + st.success("The age column is in the correct format") + update_session_state(template_df) + st.experimental_rerun() + if multiple == "No": + age = st.text_input("Input the age of your sample in Y M D format e.g. 12Y 3M 4D", help="As you only have one age, the inputted age will be immediatly used to fill all cells in the age column") + # Check if the age is in Y M D format or age range format + + if age: + if not (re.match(r"^(\s*\d+\s*Y)?(\s*\d+\s*M)?(\s*\d+\s*D)?(|\s*-\s*\d+\s*Y)?(|\s*-\s*\d+\s*M)?(|\s*-\s*\d+\s*D)?(/)?(|\s*\d+\s*Y)?(|\s*\d+\s*M)?(|\s*\d+\s*D)?$", age)): + st.error("The age is not in the correct format, please check and try again",icon="🚨") + st.stop() + else: + st.write("The age is in the correct format") + template_df["characteristics[age]"] = age + update_session_state(template_df) + st.experimental_rerun() + if multiple == "Not available": + template_df["characteristics[age]"] = "Not available" + update_session_state(template_df) + st.experimental_rerun() + +if selection == "comment[alkylation reagent]": + st.subheader("Input the alkylation reagent that was used in your experiment") + all_alkylation_elements = data_dict["all_alkylation_elements"] + alkylation_nodes = data_dict["alkylation_nodes"] + df = ParsingModule.multiple_ontology_tree(selection, all_alkylation_elements, alkylation_nodes, template_df, multiple_in_one=True) + update_session_state(df) + +if selection == "characteristics[ancestry category]": + st.subheader("Input the ancestry of your samples") + all_ancestry_elements = data_dict["all_ancestry_category_elements"] + ancestry_nodes = data_dict["ancestry_category_nodes"] + df = ParsingModule.multiple_ontology_tree(selection, all_ancestry_elements, ancestry_nodes, template_df, multiple_in_one=False) + update_session_state(df) + + +if selection == "characteristics[cell type]": + st.subheader("Input the cell type of your sample") + all_cell = data_dict["all_cell_elements"] + cell_nodes = data_dict["cell_nodes"] + df = ParsingModule.multiple_ontology_tree(selection, all_cell, cell_nodes, template_df, multiple_in_one=True) + update_session_state(df) + +if selection == "characteristics[cell line]": + st.subheader("Input the cell line of your sample if one was used") + all_cellline = data_dict["all_cell_line_elements"] + cellline_nodes = data_dict["cell_line_nodes"] + df = ParsingModule.multiple_ontology_tree(selection, all_cellline, cellline_nodes, template_df,multiple_in_one=True) + update_session_state(df) + +if selection == "comment[cleavage agent details]": + st.subheader("Input the cleavage agent details of your sample") + cleavage_list = data_dict["cleavage_list"] + enzymes = st.multiselect( + "Select the cleavage agents used in your sample If no cleavage agent was used e.g. in top down proteomics, choose *NoEnzyme*", + cleavage_list, + ) + s = st.checkbox("Ready for input?") + if s and len(enzymes) == 1: + template_df[selection] = enzymes[0] + st.experimental_rerun() + if s: + df = ParsingModule.fill_in_from_list(template_df, selection, enzymes) + update_session_state(df) + +if selection == "characteristics[compound]": + st.subheader("If a compound was added to your sample, input the name here") + compounds = [] + input_compounds = st.text_input("Input compound names as comma separated list") + if input_compounds is not None: + input_compounds = re.sub(" ", "", input_compounds) + input_compounds = input_compounds.split(",") + compounds.append(input_compounds) + compounds = compounds[0] + st.write(compounds) + if compounds != [""]: + template_df = ParsingModule.fill_in_from_list(template_df, selection, compounds) + st.session_state["template_df"] = template_df + +if selection == "characteristics[concentration of compound]": + st.subheader("Input the concentration with which the compound was added to your sample") + concentration = [] + input_concentration = st.text_input( + "Input compound concentration as comma separated list, don't forget to indicate the unit" + ) + if input_concentration is not None: + input_concentration = re.sub(" ", "", input_concentration) + input_concentration = input_concentration.split(",") + concentration.append(input_concentration) + concentration = concentration[0] + st.write(concentration) + if concentration != [""]: + template_df["characteristics[concentration of compound]"] = "" + template_df = ParsingModule.fill_in_from_list( + template_df, selection, concentration + ) + st.session_state["template_df"] = template_df + + +if selection == "comment[collision energy]": + st.subheader("Input the collision energy that was used in your experiment") + multiple = st.radio( + f"Are there multiple collision energies in your data?", ("No", "Yes") + ) + if multiple == "Yes": + st.write( + "Input the collision energy directly in the SDRF file. Don't forget to indicate the unit" + ) + df = ParsingModule.fill_in_from_list(template_df, selection) + update_session_state(df) + else: + coll_en = st.text_input("Input the collision energy and its unit") + template_df[selection] = coll_en + st.session_state["template_df"] = template_df + +if selection == "characteristics[developmental stage]": + st.subheader("Input the developmental stage of your sample") + all_devstage = data_dict["all_developmental_stage_elements"] + devstage_nodes = data_dict["developmental_stage_nodes"] + df = ParsingModule.multiple_ontology_tree(selection, all_devstage, devstage_nodes, template_df, multiple_in_one=False) + update_session_state(df) + +if selection == "characteristics[disease]": + st.subheader("If you have healthy and control samples, indicate healthy samples using *normal*. Input the disease for the other samples using the ontology") + all_disease_type = data_dict["all_disease_elements"] + disease_nodes = data_dict["disease_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_disease_type, disease_nodes, template_df + ) + update_session_state(df) + +if selection == "comment[dissociation method]": + st.subheader("Input the dissociation method that was used in your experiment") + all_dissociation_elements = data_dict["all_dissociation_elements"] + dissociation_nodes = data_dict["dissociation_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_dissociation_elements, dissociation_nodes, template_df, multiple_in_one=True) + update_session_state(df) + +if selection == "characteristics[enrichment process]": + st.subheader("Input the enrichment process that was used in your experiment") + all_enrichment_elements = data_dict["all_enrichment_elements"] + enrichment_nodes = data_dict["enrichment_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_enrichment_elements, enrichment_nodes, template_df + ) + update_session_state(df) + +if selection == "comment[fraction identifier]": + # first ask if they have fractionation + # if they don't ==> fraction identifier = 1 + # if they do: add fraction identifiers + add fractionation method + number_of_fractions = None + col1, col2 = st.columns(2) + with col1: + multiple = st.selectbox( + f"Are there multiple fractions in your data?", ("", "No", "Yes") + ) + number_of_methods = None + if multiple == "Yes": + with col2: + number_of_fractions = st.number_input( + f"How many different fractions are in your data?", + min_value=0, + step=1, + ) + number_of_methods = st.number_input( + f"How many different fractionation methods are used?", + min_value=0, + step=1, + ) + if multiple == "No": + template_df["comment[fraction identifier]"] = 1 + if number_of_methods: + with st.form("Provide details on the fractionation method"): + # template_df["comment[ fractionation method]"] = "" + fractionation_elements = data_dict["all_fractionation_method_elements"] + fractionation_nodes = data_dict["fractionation_nodes"] + col3, col4 = st.columns(2) + with col3: + # selectbox with search option + fractionation_elements.append(" ") + fractionation_elements = set(fractionation_elements) + return_search = st.multiselect( + "Select your matching fractionation term using this autocomplete function", + fractionation_elements, + max_selections=number_of_methods, + ) + with col4: + st.write("Or follow the ontology based drop down menu below") + return_select = tree_select( + fractionation_nodes, + no_cascade=True, + expand_on_click=True, + check_model="leaf", + ) + + if (len(return_select["checked"]) > 1) & ( + len(return_select["checked"]) != number_of_methods + ): + st.error(f"You need to select a total of {number_of_methods}.") + all = return_search + return_select["checked"] + all = [i.split(",")[-1] for i in all if i is not None] + if (len(all) >= 1) & (len(all) != number_of_methods): + st.error(f"You need to select a total of {number_of_methods}.") + x = st.form_submit_button("Submit selection") + if x: + st.write(f"Selection contains: {all}") + + if x: + df = ParsingModule.fill_in_from_list(template_df, "comment[fractionation method]", all) + df = ParsingModule.fill_in_from_list(template_df, "comment[fraction identifier]", [*range(1, number_of_fractions + 1)]) + update_session_state(df) + +if selection == "comment[instrument]": + st.subheader("Input the instrument that was used in your experiment") + all_instrument_elements = data_dict["all_instrument_elements"] + instrument_nodes = data_dict["instrument_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_instrument_elements, instrument_nodes, template_df + ) + update_session_state(df) + +if selection == "characteristics[individual]": + col1, col2, col3 = st.columns(3) + with col1: + sel = st.selectbox("Do you have multiple indiviuals in your data?", ("", "No", "Yes", "Not available")) + if sel == "No": + template_df[selection] = 1 + st.session_state["template_df"] = template_df + st.experimental_rerun() + if sel == "Yes": + with col2: + number = st.number_input("How many indiviuals are in your data?", min_value=0, step=1) + with col3: + s = st.checkbox("Ready for input?") + if sel == "Yes" and s: + indiv = [*range(1, number + 1, 1)] + df = ParsingModule.fill_in_from_list(template_df, "characteristics[individual]", indiv) + update_session_state(df) + if sel == "Not available": + template_df[selection] = "Not available" + st.session_state["template_df"] = template_df + st.experimental_rerun() + + +if selection == "comment[label]": + st.subheader("Input the label that was used in your experiment. If no label was added, indicate this using *label free sample*.") + all_label_elements = data_dict["all_label_elements"] + label_nodes = data_dict["label_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_label_elements, label_nodes, template_df + ) + update_session_state(df) + +if selection == "characteristics[organism]": + if "selected_species" not in st.session_state: + st.session_state["selected_species"] = set() + st.subheader("Select the species that is present in your sample") + if selection not in template_df.columns: + template_df[selection] = np.nan + multiple_in_one = False + index = template_df.columns.get_loc(selection) + col1, col2, col3, col4 = st.columns(4) + columns_to_adapt = [selection] + with col1: + multiple = st.radio(f"Are there multiple organisms in your data?", ("No", "Yes")) + if multiple == "Yes": + with col2: + number = st.number_input( + f"How many different organisms are in your data?", + min_value=0, + step=1) + with col3: + multiple_in_one_sel = st.radio(f"Are there multiple organisms within one sample?", ("No", "Yes")) + if multiple_in_one_sel == "Yes": + multiple_in_one = True + for i in range(number-1): + # add column next to the original column if it is not already there + if f"{selection}_{i+1}" not in template_df.columns: + template_df.insert(index+1, f"{selection}_{i+1}", "empty") + columns_to_adapt.append(f"{selection}_{i+1}") + if multiple == "No": + number = 1 + + col6, col7 = st.columns(2) + with col6: + model = st.radio('Does your data contain only classical model organisms?', ('Yes', 'No'), + help="Classical model organism being: Homo sapiens, Mus musculus, Drosophila Melanogaster, Arabidopsis thaliana, Xenopus laevis, Xenopus tropicalis, Saccharomyces cerevisiae, Caenorhabditis elegans, Danio rerio, Escherichia coli and Cavia porcellus") + classical_model_organisms = ["Homo sapiens", + "Mus musculus", + "Drosophila Melanogaster", + "Arabidopsis thaliana", + "Xenopus laevis", "Xenopus tropicalis", + "Saccharomyces cerevisiae", + "Caenorhabditis elegans", + "Danio rerio", + "Escherichia coli", + "Cavia porcellus"] + if model == 'Yes': + with col7: + sel = st.multiselect('Select the classical model organism here', classical_model_organisms, max_selections=number) + if isinstance(sel, list): + for i in sel: + if i is not None: + st.session_state.selected_species.add(i) + else: + if sel is not None: + st.session_state.selected_species.add(sel) + if model == 'No': + st.write('The NCBITaxon ontology data is loaded. Please allow a few seconds for the data to be loaded. ') + organism_data = load_organism_data() + if organism_data: + st.success(f"*NCBITaxon organism data was loaded*", icon="βœ…") + else: + st.error("Failed loading data", icon="❌") + st.write("""First, select your species type using the tabs below. + Then you can fill in the name of your species and suggested ontology terms will appear, from which you can select the correct term or the perfectly matched term. + If you want to consult the ontology tree structure, you can click the button below to the OLS search page.""") + url = "https://www.ebi.ac.uk/ols/ontologies/ncbitaxon" + button = f'OLS NCBITaxon ontology tree' + st.write(button, unsafe_allow_html=True) + + tab1, tab2, tab3, tab4, tab5, tab6 = st.tabs(['Eukaryota', 'Archaea', 'Bacteria', 'Viruses', 'Unclassified', 'Other']) + st.write(st.session_state.selected_species) + with tab1: + ret= organism_selection("eukaryota") + if ret != None: + if isinstance(ret, list): + for i in ret: + st.session_state.selected_species.add(i) + else: + st.session_state.selected_species.add(ret) + with tab2: + ret= organism_selection("archaea") + if ret != None: + #if ret is a list, add all elements to the set + if isinstance(ret, list): + for i in ret: + st.session_state.selected_species.add(i) + else: + st.session_state.selected_species.add(ret) + with tab3: + ret= organism_selection("bacteria") + if ret != None: + #if ret is a list, add all elements to the set + if isinstance(ret, list): + for i in ret: + st.session_state.selected_species.add(i) + else: + st.session_state.selected_species.add(ret) + + with tab4: + ret= organism_selection("virus") + if ret != None: + #if ret is a list, add all elements to the set + if isinstance(ret, list): + for i in ret: + st.session_state.selected_species.add(i) + else: + st.session_state.selected_species.add(ret) + + with tab5: + ret= organism_selection("unclassified") + if ret != None: + #if ret is a list, add all elements to the set + if isinstance(ret, list): + for i in ret: + st.session_state.selected_species.add(i) + else: + st.session_state.selected_species.add(ret) + + with tab6: + ret= organism_selection("other_sequences") + if ret != None: + #if ret is a list, add all elements to the set + if isinstance(ret, list): + for i in ret: + st.session_state.selected_species.add(i) + else: + st.session_state.selected_species.add(ret) + if st.session_state['selected_species'] != {None}: + st.write(f"You selected the following species:{st.session_state['selected_species']}") + if len(st.session_state["selected_species"]) > number: + st.error(f"""Number of selected species is {len(st.session_state['selected_species'])}, but this should be {number} according to the input above. + Select the species to remove from the list below""") + # checkbox to remove species + remove_species = set() + for i, element in enumerate(st.session_state["selected_species"]): + if st.checkbox(f"{element}", key=i): + remove_species.add(element) + st.session_state["selected_species"] = st.session_state["selected_species"] - remove_species + st.write(f"Selected species after removal: {st.session_state['selected_species']}") + elif (len(st.session_state["selected_species"]) < number) and (len(st.session_state["selected_species"]) > 0): + st.error(f"""Number of selected species is {len(st.session_state['selected_species'])}, but this should be {number} according to the input above. + Please select {number-len(st.session_state['selected_species'])} more organisms.""") + s = st.checkbox("Ready for input?") + if s: + input_list = list(st.session_state["selected_species"]) + if multiple_in_one: + #add "" in the beginning of the list + input_list.insert(0, "NA") + df = ParsingModule.fill_in_from_list(template_df, selection, input_list, multiple_in_one) + update_session_state(df) + #remove the session state + del st.session_state["selected_species"] + #remove the organism_data from the session state + +if selection == "characteristics[organism part]": + st.write("Select the part of the organism that is present in your sample") + all_orgpart_elements = data_dict["all_organism_part_elements"] + orgpart_nodes = data_dict["organism_part_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_orgpart_elements, orgpart_nodes, template_df, multiple_in_one=True + ) + update_session_state(df) + +if selection == "comment[reduction reagent]": + st.write("Input the reduction reagent that was used in your experiment") + all_reduction_elements = data_dict["all_reduction_reagent_elements"] + reduction_nodes = data_dict["reduction_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_reduction_elements, reduction_nodes, template_df + ) + update_session_state(df) + +if selection == "characteristics[sex]": + col1, col2, col3 = st.columns(3) + with col1: + sel = st.selectbox("Are there multiple sexes in your data?", ("", "No", "Yes", "Not available")) + if sel == "No": + sel2 = st.selectbox("Select the sex of your sample", ("", "F", "M", "unknown")) + if sel2 in ["F", "M", "unknown"]: + template_df[selection] = sel2 + st.session_state["template_df"] = template_df + st.experimental_rerun() + if sel == "Yes": + df = ParsingModule.fill_in_from_list(template_df, "characteristics[sex]", ["F", "M", "unknown"]) + update_session_state(df) + if sel == "Not available": + template_df[selection] = "Not available" + st.session_state["template_df"] = template_df + st.experimental_rerun() + +if selection == "comment[technical replicate]": + col1, col2, col3 = st.columns(3) + with col1: + sel = st.selectbox("Do you have technical replicates?", ("", "Yes", "No")) + if sel == "No": + template_df[selection] = 1 + st.session_state["template_df"] = template_df + st.experimental_rerun() + if sel == "Yes": + with col2: + number = st.number_input("How many technical replicates are in your data?", min_value=0, step=1) + with col3: + s = st.checkbox("Ready for input?") + if sel== "Yes" and s: + tech_rep = [*range(1, number + 1, 1)] + df = ParsingModule.fill_in_from_list(template_df, selection, tech_rep) + update_session_state(df) + + + +if selection == "characteristics[biological replicate]": + col1, col2, col3 = st.columns(3) + with col1: + sel = st.selectbox("Do you have biological replicates?", ("", "Yes", "No")) + if sel == "No": + template_df[selection] = 1 + st.session_state["template_df"] = template_df + st.experimental_rerun() + if sel == "Yes": + with col2: + number = st.number_input("How many biological replicates are there?", min_value=0, step=1) + with col3: + s = st.checkbox("Ready for input?") + if sel== "Yes" and s: + biol_rep = [*range(1, int(number) + 1, 1)] + template_df = ParsingModule.fill_in_from_list(template_df, selection, biol_rep) + st.session_state["template_df"] = template_df + #st.experimental_rerun() + +if selection == "comment[fragment mass tolerance]": + st.subheader(""" Input the fragment mass tolerance and **the unit (ppm or Da)**. click Update twice when finished""") + df = ParsingModule.fill_in_from_list(template_df, selection) + update_session_state(df) + +if selection == "comment[precursor mass tolerance]": + st.subheader(""" Input the precursor mass tolerance and **the unit (ppm or Da)**. click Update twice when finished""") + df = ParsingModule.fill_in_from_list(template_df, selection) + update_session_state(df) + + + +if selection == "characterics[synthetic peptide]": + st.subheader( + "If the sample is a synthetic peptide library, indicate this by selecting *synthetic* or *not synthetic*" + ) + df = ParsingModule.fill_in_from_list( + template_df, selection, ["synthetic", "not synthetic"] + ) + update_session_state(df) + +if selection == "comment[depletion]": + depl = st.selectbox("Is the sample depleted?", ("","Yes", "No")) + if depl == "Yes": + st.write("Indicate depleted or bound fraction directly in the SDRF file") + df = ParsingModule.fill_in_from_list( + template_df, selection, ["depleted fraction", "bound fraction"] + ) + update_session_state(df) + if depl == "No": + template_df["comment[depletion]"] = "not depletion" + st.session_state["template_df"] = template_df + st.experimental_rerun() + +if selection == "comment[modification parameters]": + st.write(""" First select the modifications that are in your sample using the drop down autocomplete menu. After selection you will need to choose the modification type, position and target amino acid. + Modification type can be fixed, variable or annotated. Annotated is used to search for all the occurrences of the modification into an annotated protein database file like UNIPROT XML or PEFF. + Position can be anywhere, protein N-term, protein C-term, any N-term or any C-term. + Target amino acid can be any amino acid or X if it's not in the list. Yoy can also select multiple amino acids.""") + st.write(""" If the modification of your choice is not available in the drop down list, select "Other" and input the modification name, chemical formula and mass of your custom modification.""") + st.write(""" The final modification will be formatted following the SDRF guidelines after which you can click on "Submit modifications".""") + unimod = data_dict["unimod_dict"] + inputs = sorted(list(unimod.keys())) + inputs.append("Other") + mt = ["Fixed", "Variable", "Annotated"] + pp = ["Anywhere", "Protein N-term", "Protein C-term", "Any N-term", "Any C-term"] + ta = ["X","G","A","L","M","F","W","K","Q","E","S","P","V","I","C","Y","H","R","N","D","T"] + mods_sel = st.multiselect("Select the modifications present in your data", inputs) + sdrf_mods = [] + st.session_state["sdrf_mods"] = sdrf_mods + + for i in mods_sel: + st.write(f"**{i}**") + col1, col2, col3 = st.columns(3) + + + with col1: + mt_sel = st.selectbox("Select the modification type", mt, key=f"mt_{i}") + with col2: + pp_sel = st.selectbox( + "Select the position of the modification", pp, key=f"pp_{i}" + ) + with col3: + ta_sel = st.multiselect("Select the target amino acid", ta, key=f"ta_{i}") + + if i == "Other": + col4, col5, col6 = st.columns(3) + with col4: + name = st.text_input( + "Input a logical name" + ) + with col5: + form = st.text_input("Input the chemical formula") + with col6: + mass = st.text_input("Input the molecular mass") + + final_str = f"NT={name};MT={mt_sel};PP={pp_sel};TA={ta_sel};CF={form};MM={mass}" + st.session_state["sdrf_mods"].append(final_str) + st.write( + f""" **Final SDRF notation of modification:** + {final_str}""" + ) + else: + final_str = f"{unimod[i]};MT={mt_sel};PP={pp_sel};TA={ta_sel}" + st.session_state["sdrf_mods"].append(final_str) + st.write( + f"""**Final SDRF notation of modification:** + {final_str}""" + ) + st.write(f"Confirmed modifications contain: {st.session_state['sdrf_mods']}") + submit = st.checkbox( + "Submit modifications", + help="Click to add the modifications to the SDRF file. If everything looks fine, click again", + ) + + if submit: + # for every element in the list sdrf_mods + # add it to the template_df as a value in a new column with name selection_1, selection_2, selection_3, etc + # then update the session state + #get the index of the original column + index = template_df.columns.get_loc(selection) + #insert the new column next to the original index + for i, mod in enumerate(sdrf_mods): + st.write(i, mod) + if i == 0: + template_df[f"{selection}"] = mod + else: + template_df.insert(index+i, f"{selection}_{i}", mod) + index += 1 + + st.session_state["template_df"] = template_df + st.write(template_df) + +if selection == "undo column": + st.write("""Here you can select a column that you want to reannotate. + Upon clicking the column the current values will be removed and you can reannotate the column. + """) + col1, col2 = st.columns(2) + with col1: + sel = st.multiselect("Select the column(s) you want to reannotate", template_df.columns) + with col2: + if st.button("Reannotate"): + template_df[sel] = np.nan + st.session_state["template_df"] = template_df + st.experimental_rerun() + diff --git a/.history/pages/3_3. Required_columns_20240927125738.py b/.history/pages/3_3. Required_columns_20240927125738.py new file mode 100644 index 0000000..1f8fa8e --- /dev/null +++ b/.history/pages/3_3. Required_columns_20240927125738.py @@ -0,0 +1,804 @@ +import re +import warnings +warnings.filterwarnings("ignore") +import streamlit as st +import pandas as pd +import numpy as np +import json +import gzip +import ParsingModule +import os +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode +from streamlit_tree_select import tree_select +from PIL import Image +import base64 +import io + +st.set_page_config( + page_title="Required columns", + layout="wide", + page_icon="πŸ§ͺ", + menu_items={ + "Get help": "https://github.com/compomics/lesSDRF/issues", + "Report a bug": "https://github.com/compomics/lesSDRF/issues", + }, +) +def add_logo(logo_path, width, height): + """Read and return a resized logo""" + logo = Image.open(logo_path) + modified_logo = logo.resize((width, height)) + return modified_logo + +def get_base64_image(image): + img_buffer = io.BytesIO() + image.save(img_buffer, format="PNG") + img_str = base64.b64encode(img_buffer.getvalue()).decode() + return img_str + +my_logo = add_logo(logo_path="final_logo.png", width=149, height=58) + +st.markdown( + f""" + + """, + unsafe_allow_html=True, +) + +def update_session_state(df): + st.session_state["template_df"] = df + +@st.cache_data +def load_organism_data(): + #find dir one up from current dir + data_dir = os.path.dirname(os.path.dirname(__file__)) + folder_path = os.path.join(data_dir, "data") + data = {} + for filename in os.listdir(folder_path): + # only load the files containing the following names: archae, bacteria, eukaryota, virus, unclassified, other sequences + if re.search(r"archaea|bacteria|eukaryota|virus|unclassified|other_sequences", filename): + file_path = os.path.join(folder_path, filename) + if filename.endswith(".json.gz"): + try: + with gzip.open(file_path, "rb") as f: + file_data = json.load(f) + filename_key = filename.replace(".json.gz", "") + data[filename_key] = file_data + except gzip.BadGzipFile: + st.write(f"Error reading file {file_path}: not a gzipped file") + else: + st.write(f"Skipping file {file_path}: not a gzipped file") + else: + continue + return data + +def organism_selection(species): + lem = organism_data[f"all_{species}_elements"] + search_term = st.text_input(f"Search for an {species} species here", "") + ret = ParsingModule.autocomplete_species_search(lem, search_term) + if ret != None: + return ret + +# Define the default button color (you can adjust this as desired) +default_color = "#ff4b4b" + +# Define the button CSS styles +button_styles = f""" + background-color: white; + color: {default_color}; + border-radius: 20px; + padding: 10px 20px; + border: 1px solid {default_color}; + text-align: center; + text-decoration: none; + display: inline-block; + font-size: 16px; + margin: 4px 2px; + cursor: pointer; +""" +st.title("""3. Required columns""") +# if template_df is not in the session state, don't run all the code below +if "template_df" not in st.session_state: + st.error("Please fill in the template file in the Home page first", icon="🚨") + st.stop() +else: + template_df = st.session_state["template_df"] + with st.container(): + st.write("**This is your current SDRF file.**") + st.dataframe(template_df) + +data_dict = st.session_state["data_dict"] +#get all columns that are empty or contain only the word "empty" in template_df +empty_columns = [col for col in template_df.columns if template_df[col].isnull().all() or (template_df[col] == "empty").all()] +#remove columns from the list that have an underscore in the name(these are added because of multiple in one samples) +empty_columns = [col for col in empty_columns if "_" not in col] +empty_columns.append('undo column') +empty_columns.insert(0, 'start') + + + + +with st.sidebar: + selection = st.radio( + "The following columns are empty and required", + empty_columns, help="If a column you're looking for is not in this display, This means it is not empty. Click on the 'undo column' button and empty your column of interest." + ) + download = st.download_button("Press to download SDRF file",ParsingModule.convert_df(template_df), "intermediate_SDRF.sdrf.tsv", help="download your SDRF file") + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: + *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") + +if selection == 'start': + st.write("""In the sidebar, all the empty columns that are required for you SDRF file are listed. Select the one you want to annotate first. + When a column is filled in, it will disappear from the sidebar so you can keep track on which columns still require input. + When you want to reannotate a previously filled in column, you can do so by clicking on the **undo column** button in the sidebar. + """) + st.write("""Every page will start with your current SDRF file and at the bottom of the page there is a button to download the intermediate SDRF file""") + + + + + +if selection == "source name": + st.write( + """The source name is the unique sample name (it can be present multiple times if the same sample is used several times in the same dataset) eg. healthy_patient_1, diseased_patient_1 + If you did not add it using the previous mapping function, you can input it here manually.") + """ + ) + st.write( + "Type the correct source names in the corresponding column and **double click** *Update* when finished" + ) + template_df = ParsingModule.fill_in_from_list(template_df, "source name") + st.session_state["template_df"] = template_df + + +if selection == "assay name": + st.write( + """The assay name is a name for the run file, this has to be a uniqe value eg. run 1 - run 2 - run 3_fraction1. If you did not add it using the previous mapping function, you can input it here + manually.""" + ) + st.write( + "Type the correct assay names in the corresponding column and click Update twice when finished" + ) + template_df = ParsingModule.fill_in_from_list(template_df, "assay name") + st.session_state["template_df"] = template_df + +if selection == "technology type": + with st.form("Choose the technology type in your sample"): + tech_type = st.radio( + "Choose the technology type from these options:", + ( + "proteomic profiling by mass spectrometry", + "metabolomics profiling by mass spectrometry", + "other", + ), + ) + if st.form_submit_button("Submit"): + template_df["technology type"] = tech_type + st.session_state["template_df"] = template_df + +if selection == "characteristics[age]": + st.subheader("Input the ages of your samples using the Years Months Days format, e.g. 1Y 2M 3D. Age ranges should be formatted as e.g. 1Y-3Y") + multiple = st.selectbox(f"Are there multiple ages in your data?", ("","No", "Yes", "Not available"), help="If you select Not available, the column will be filled in with 'Not available'") + if multiple == "Yes": + template_df = ParsingModule.fill_in_from_list(template_df, "characteristics[age]") + is_valid, wrong_values = ParsingModule.check_age_format(template_df, "characteristics[age]") + if not is_valid: + st.error(f"The age column is not in the correct format. Wrong values: {', '.join(wrong_values)}") + st.stop() + else: + template_df.replace("empty", np.nan, inplace=True) + st.success("The age column is in the correct format") + update_session_state(template_df) + st.experimental_rerun() + if multiple == "No": + age = st.text_input("Input the age of your sample in Y M D format e.g. 12Y 3M 4D", help="As you only have one age, the inputted age will be immediatly used to fill all cells in the age column") + # Check if the age is in Y M D format or age range format + + if age: + if not (re.match(r"^(\s*\d+\s*Y)?(\s*\d+\s*M)?(\s*\d+\s*D)?(|\s*-\s*\d+\s*Y)?(|\s*-\s*\d+\s*M)?(|\s*-\s*\d+\s*D)?(/)?(|\s*\d+\s*Y)?(|\s*\d+\s*M)?(|\s*\d+\s*D)?$", age)): + st.error("The age is not in the correct format, please check and try again",icon="🚨") + st.stop() + else: + st.write("The age is in the correct format") + template_df["characteristics[age]"] = age + update_session_state(template_df) + st.experimental_rerun() + if multiple == "Not available": + template_df["characteristics[age]"] = "Not available" + update_session_state(template_df) + st.experimental_rerun() + +if selection == "comment[alkylation reagent]": + st.subheader("Input the alkylation reagent that was used in your experiment") + all_alkylation_elements = data_dict["all_alkylation_elements"] + alkylation_nodes = data_dict["alkylation_nodes"] + df = ParsingModule.multiple_ontology_tree(selection, all_alkylation_elements, alkylation_nodes, template_df, multiple_in_one=True) + update_session_state(df) + +if selection == "characteristics[ancestry category]": + st.subheader("Input the ancestry of your samples") + all_ancestry_elements = data_dict["all_ancestry_category_elements"] + ancestry_nodes = data_dict["ancestry_category_nodes"] + df = ParsingModule.multiple_ontology_tree(selection, all_ancestry_elements, ancestry_nodes, template_df, multiple_in_one=False) + update_session_state(df) + + +if selection == "characteristics[cell type]": + st.subheader("Input the cell type of your sample") + all_cell = data_dict["all_cell_elements"] + cell_nodes = data_dict["cell_nodes"] + df = ParsingModule.multiple_ontology_tree(selection, all_cell, cell_nodes, template_df, multiple_in_one=True) + update_session_state(df) + +if selection == "characteristics[cell line]": + st.subheader("Input the cell line of your sample if one was used") + all_cellline = data_dict["all_cell_line_elements"] + cellline_nodes = data_dict["cell_line_nodes"] + df = ParsingModule.multiple_ontology_tree(selection, all_cellline, cellline_nodes, template_df,multiple_in_one=True) + update_session_state(df) + +if selection == "comment[cleavage agent details]": + st.subheader("Input the cleavage agent details of your sample") + cleavage_list = data_dict["cleavage_list"] + enzymes = st.multiselect( + "Select the cleavage agents used in your sample If no cleavage agent was used e.g. in top down proteomics, choose *NoEnzyme*", + cleavage_list, + ) + s = st.checkbox("Ready for input?") + if s and len(enzymes) == 1: + template_df[selection] = enzymes[0] + st.experimental_rerun() + if s: + df = ParsingModule.fill_in_from_list(template_df, selection, enzymes) + update_session_state(df) + +if selection == "characteristics[compound]": + st.subheader("If a compound was added to your sample, input the name here") + compounds = [] + input_compounds = st.text_input("Input compound names as comma separated list") + if input_compounds is not None: + input_compounds = re.sub(" ", "", input_compounds) + input_compounds = input_compounds.split(",") + compounds.append(input_compounds) + compounds = compounds[0] + st.write(compounds) + if compounds != [""]: + template_df = ParsingModule.fill_in_from_list(template_df, selection, compounds) + st.session_state["template_df"] = template_df + +if selection == "characteristics[concentration of compound]": + st.subheader("Input the concentration with which the compound was added to your sample") + concentration = [] + input_concentration = st.text_input( + "Input compound concentration as comma separated list, don't forget to indicate the unit" + ) + if input_concentration is not None: + input_concentration = re.sub(" ", "", input_concentration) + input_concentration = input_concentration.split(",") + concentration.append(input_concentration) + concentration = concentration[0] + st.write(concentration) + if concentration != [""]: + template_df["characteristics[concentration of compound]"] = "" + template_df = ParsingModule.fill_in_from_list( + template_df, selection, concentration + ) + st.session_state["template_df"] = template_df + + +if selection == "comment[collision energy]": + st.subheader("Input the collision energy that was used in your experiment") + multiple = st.radio( + f"Are there multiple collision energies in your data?", ("No", "Yes") + ) + if multiple == "Yes": + st.write( + "Input the collision energy directly in the SDRF file. Don't forget to indicate the unit" + ) + df = ParsingModule.fill_in_from_list(template_df, selection) + update_session_state(df) + else: + coll_en = st.text_input("Input the collision energy and its unit") + template_df[selection] = coll_en + st.session_state["template_df"] = template_df + +if selection == "characteristics[developmental stage]": + st.subheader("Input the developmental stage of your sample") + all_devstage = data_dict["all_developmental_stage_elements"] + devstage_nodes = data_dict["developmental_stage_nodes"] + df = ParsingModule.multiple_ontology_tree(selection, all_devstage, devstage_nodes, template_df, multiple_in_one=False) + update_session_state(df) + +if selection == "characteristics[disease]": + st.subheader("If you have healthy and control samples, indicate healthy samples using *normal*. Input the disease for the other samples using the ontology") + all_disease_type = data_dict["all_disease_elements"] + disease_nodes = data_dict["disease_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_disease_type, disease_nodes, template_df + ) + update_session_state(df) + +if selection == "comment[dissociation method]": + st.subheader("Input the dissociation method that was used in your experiment") + all_dissociation_elements = data_dict["all_dissociation_elements"] + dissociation_nodes = data_dict["dissociation_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_dissociation_elements, dissociation_nodes, template_df, multiple_in_one=True) + update_session_state(df) + +if selection == "characteristics[enrichment process]": + st.subheader("Input the enrichment process that was used in your experiment") + all_enrichment_elements = data_dict["all_enrichment_elements"] + enrichment_nodes = data_dict["enrichment_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_enrichment_elements, enrichment_nodes, template_df + ) + update_session_state(df) + +if selection == "comment[fraction identifier]": + # first ask if they have fractionation + # if they don't ==> fraction identifier = 1 + # if they do: add fraction identifiers + add fractionation method + number_of_fractions = None + col1, col2 = st.columns(2) + with col1: + multiple = st.selectbox( + f"Are there multiple fractions in your data?", ("", "No", "Yes") + ) + number_of_methods = None + if multiple == "Yes": + with col2: + number_of_fractions = st.number_input( + f"How many different fractions are in your data?", + min_value=0, + step=1, + ) + number_of_methods = st.number_input( + f"How many different fractionation methods are used?", + min_value=0, + step=1, + ) + if multiple == "No": + template_df["comment[fraction identifier]"] = 1 + if number_of_methods: + with st.form("Provide details on the fractionation method"): + # template_df["comment[ fractionation method]"] = "" + fractionation_elements = data_dict["all_fractionation_method_elements"] + fractionation_nodes = data_dict["fractionation_nodes"] + col3, col4 = st.columns(2) + with col3: + # selectbox with search option + fractionation_elements.append(" ") + fractionation_elements = set(fractionation_elements) + return_search = st.multiselect( + "Select your matching fractionation term using this autocomplete function", + fractionation_elements, + max_selections=number_of_methods, + ) + with col4: + st.write("Or follow the ontology based drop down menu below") + return_select = tree_select( + fractionation_nodes, + no_cascade=True, + expand_on_click=True, + check_model="leaf", + ) + + if (len(return_select["checked"]) > 1) & ( + len(return_select["checked"]) != number_of_methods + ): + st.error(f"You need to select a total of {number_of_methods}.") + all = return_search + return_select["checked"] + all = [i.split(",")[-1] for i in all if i is not None] + if (len(all) >= 1) & (len(all) != number_of_methods): + st.error(f"You need to select a total of {number_of_methods}.") + x = st.form_submit_button("Submit selection") + if x: + st.write(f"Selection contains: {all}") + + if x: + df = ParsingModule.fill_in_from_list(template_df, "comment[fractionation method]", all) + df = ParsingModule.fill_in_from_list(template_df, "comment[fraction identifier]", [*range(1, number_of_fractions + 1)]) + update_session_state(df) + +if selection == "comment[instrument]": + st.subheader("Input the instrument that was used in your experiment") + all_instrument_elements = data_dict["all_instrument_elements"] + instrument_nodes = data_dict["instrument_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_instrument_elements, instrument_nodes, template_df + ) + update_session_state(df) + +if selection == "characteristics[individual]": + col1, col2, col3 = st.columns(3) + with col1: + sel = st.selectbox("Do you have multiple indiviuals in your data?", ("", "No", "Yes", "Not available")) + if sel == "No": + template_df[selection] = 1 + st.session_state["template_df"] = template_df + st.experimental_rerun() + if sel == "Yes": + with col2: + number = st.number_input("How many indiviuals are in your data?", min_value=0, step=1) + with col3: + s = st.checkbox("Ready for input?") + if sel == "Yes" and s: + indiv = [*range(1, number + 1, 1)] + df = ParsingModule.fill_in_from_list(template_df, "characteristics[individual]", indiv) + update_session_state(df) + if sel == "Not available": + template_df[selection] = "Not available" + st.session_state["template_df"] = template_df + st.experimental_rerun() + + +if selection == "comment[label]": + st.subheader("Input the label that was used in your experiment. If no label was added, indicate this using *label free sample*.") + all_label_elements = data_dict["all_label_elements"] + label_nodes = data_dict["label_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_label_elements, label_nodes, template_df + ) + update_session_state(df) + +if selection == "characteristics[organism]": + if "selected_species" not in st.session_state: + st.session_state["selected_species"] = set() + st.subheader("Select the species that is present in your sample") + if selection not in template_df.columns: + template_df[selection] = np.nan + multiple_in_one = False + index = template_df.columns.get_loc(selection) + col1, col2, col3, col4 = st.columns(4) + columns_to_adapt = [selection] + with col1: + multiple = st.radio(f"Are there multiple organisms in your data?", ("No", "Yes")) + if multiple == "Yes": + with col2: + number = st.number_input( + f"How many different organisms are in your data?", + min_value=0, + step=1) + with col3: + multiple_in_one_sel = st.radio(f"Are there multiple organisms within one sample?", ("No", "Yes")) + if multiple_in_one_sel == "Yes": + multiple_in_one = True + for i in range(number-1): + # add column next to the original column if it is not already there + if f"{selection}_{i+1}" not in template_df.columns: + template_df.insert(index+1, f"{selection}_{i+1}", "empty") + columns_to_adapt.append(f"{selection}_{i+1}") + if multiple == "No": + number = 1 + + col6, col7 = st.columns(2) + with col6: + model = st.radio('Does your data contain only classical model organisms?', ('Yes', 'No'), + help="Classical model organism being: Homo sapiens, Mus musculus, Drosophila Melanogaster, Arabidopsis thaliana, Xenopus laevis, Xenopus tropicalis, Saccharomyces cerevisiae, Caenorhabditis elegans, Danio rerio, Escherichia coli and Cavia porcellus") + classical_model_organisms = ["Homo sapiens", + "Mus musculus", + "Drosophila Melanogaster", + "Arabidopsis thaliana", + "Xenopus laevis", "Xenopus tropicalis", + "Saccharomyces cerevisiae", + "Caenorhabditis elegans", + "Danio rerio", + "Escherichia coli", + "Cavia porcellus"] + if model == 'Yes': + with col7: + sel = st.multiselect('Select the classical model organism here', classical_model_organisms, max_selections=number) + if isinstance(sel, list): + for i in sel: + if i is not None: + st.session_state.selected_species.add(i) + else: + if sel is not None: + st.session_state.selected_species.add(sel) + if model == 'No': + st.write('The NCBITaxon ontology data is loaded. Please allow a few seconds for the data to be loaded. ') + organism_data = load_organism_data() + if organism_data: + st.success(f"*NCBITaxon organism data was loaded*", icon="βœ…") + else: + st.error("Failed loading data", icon="❌") + st.write("""First, select your species type using the tabs below. + Then you can fill in the name of your species and suggested ontology terms will appear, from which you can select the correct term or the perfectly matched term. + If you want to consult the ontology tree structure, you can click the button below to the OLS search page.""") + url = "https://www.ebi.ac.uk/ols/ontologies/ncbitaxon" + button = f'OLS NCBITaxon ontology tree' + st.write(button, unsafe_allow_html=True) + + tab1, tab2, tab3, tab4, tab5, tab6 = st.tabs(['Eukaryota', 'Archaea', 'Bacteria', 'Viruses', 'Unclassified', 'Other']) + st.write(st.session_state.selected_species) + with tab1: + ret= organism_selection("eukaryota") + if ret != None: + if isinstance(ret, list): + for i in ret: + st.session_state.selected_species.add(i) + else: + st.session_state.selected_species.add(ret) + with tab2: + ret= organism_selection("archaea") + if ret != None: + #if ret is a list, add all elements to the set + if isinstance(ret, list): + for i in ret: + st.session_state.selected_species.add(i) + else: + st.session_state.selected_species.add(ret) + with tab3: + ret= organism_selection("bacteria") + if ret != None: + #if ret is a list, add all elements to the set + if isinstance(ret, list): + for i in ret: + st.session_state.selected_species.add(i) + else: + st.session_state.selected_species.add(ret) + + with tab4: + ret= organism_selection("virus") + if ret != None: + #if ret is a list, add all elements to the set + if isinstance(ret, list): + for i in ret: + st.session_state.selected_species.add(i) + else: + st.session_state.selected_species.add(ret) + + with tab5: + ret= organism_selection("unclassified") + if ret != None: + #if ret is a list, add all elements to the set + if isinstance(ret, list): + for i in ret: + st.session_state.selected_species.add(i) + else: + st.session_state.selected_species.add(ret) + + with tab6: + ret= organism_selection("other_sequences") + if ret != None: + #if ret is a list, add all elements to the set + if isinstance(ret, list): + for i in ret: + st.session_state.selected_species.add(i) + else: + st.session_state.selected_species.add(ret) + if st.session_state['selected_species'] != {None}: + st.write(f"You selected the following species:{st.session_state['selected_species']}") + if len(st.session_state["selected_species"]) > number: + st.error(f"""Number of selected species is {len(st.session_state['selected_species'])}, but this should be {number} according to the input above. + Select the species to remove from the list below""") + # checkbox to remove species + remove_species = set() + for i, element in enumerate(st.session_state["selected_species"]): + if st.checkbox(f"{element}", key=i): + remove_species.add(element) + st.session_state["selected_species"] = st.session_state["selected_species"] - remove_species + st.write(f"Selected species after removal: {st.session_state['selected_species']}") + elif (len(st.session_state["selected_species"]) < number) and (len(st.session_state["selected_species"]) > 0): + st.error(f"""Number of selected species is {len(st.session_state['selected_species'])}, but this should be {number} according to the input above. + Please select {number-len(st.session_state['selected_species'])} more organisms.""") + s = st.checkbox("Ready for input?") + if s: + input_list = list(st.session_state["selected_species"]) + if multiple_in_one: + #add "" in the beginning of the list + input_list.insert(0, "NA") + df = ParsingModule.fill_in_from_list(template_df, selection, input_list, multiple_in_one) + update_session_state(df) + #remove the session state + del st.session_state["selected_species"] + #remove the organism_data from the session state + +if selection == "characteristics[organism part]": + st.write("Select the part of the organism that is present in your sample") + all_orgpart_elements = data_dict["all_organism_part_elements"] + orgpart_nodes = data_dict["organism_part_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_orgpart_elements, orgpart_nodes, template_df, multiple_in_one=True + ) + update_session_state(df) + +if selection == "comment[reduction reagent]": + st.write("Input the reduction reagent that was used in your experiment") + all_reduction_elements = data_dict["all_reduction_reagent_elements"] + reduction_nodes = data_dict["reduction_nodes"] + df = ParsingModule.multiple_ontology_tree( + selection, all_reduction_elements, reduction_nodes, template_df + ) + update_session_state(df) + +if selection == "characteristics[sex]": + col1, col2, col3 = st.columns(3) + with col1: + sel = st.selectbox("Are there multiple sexes in your data?", ("", "No", "Yes", "Not available")) + if sel == "No": + sel2 = st.selectbox("Select the sex of your sample", ("", "F", "M", "unknown")) + if sel2 in ["F", "M", "unknown"]: + template_df[selection] = sel2 + st.session_state["template_df"] = template_df + st.experimental_rerun() + if sel == "Yes": + df = ParsingModule.fill_in_from_list(template_df, "characteristics[sex]", ["F", "M", "unknown"]) + update_session_state(df) + if sel == "Not available": + template_df[selection] = "Not available" + st.session_state["template_df"] = template_df + st.experimental_rerun() + +if selection == "comment[technical replicate]": + col1, col2, col3 = st.columns(3) + with col1: + sel = st.selectbox("Do you have technical replicates?", ("", "Yes", "No")) + if sel == "No": + template_df[selection] = 1 + st.session_state["template_df"] = template_df + st.experimental_rerun() + if sel == "Yes": + with col2: + number = st.number_input("How many technical replicates are in your data?", min_value=0, step=1) + with col3: + s = st.checkbox("Ready for input?") + if sel== "Yes" and s: + tech_rep = [*range(1, number + 1, 1)] + df = ParsingModule.fill_in_from_list(template_df, selection, tech_rep) + update_session_state(df) + + + +if selection == "characteristics[biological replicate]": + col1, col2, col3 = st.columns(3) + with col1: + sel = st.selectbox("Do you have biological replicates?", ("", "Yes", "No")) + if sel == "No": + template_df[selection] = 1 + st.session_state["template_df"] = template_df + st.experimental_rerun() + if sel == "Yes": + with col2: + number = st.number_input("How many biological replicates are there?", min_value=0, step=1) + with col3: + s = st.checkbox("Ready for input?") + if sel== "Yes" and s: + biol_rep = [*range(1, int(number) + 1, 1)] + template_df = ParsingModule.fill_in_from_list(template_df, selection, biol_rep) + st.session_state["template_df"] = template_df + #st.experimental_rerun() + +if selection == "comment[fragment mass tolerance]": + st.subheader(""" Input the fragment mass tolerance and **the unit (ppm or Da)**. click Update twice when finished""") + df = ParsingModule.fill_in_from_list(template_df, selection) + update_session_state(df) + +if selection == "comment[precursor mass tolerance]": + st.subheader(""" Input the precursor mass tolerance and **the unit (ppm or Da)**. click Update twice when finished""") + df = ParsingModule.fill_in_from_list(template_df, selection) + update_session_state(df) + + + +if selection == "characterics[synthetic peptide]": + st.subheader( + "If the sample is a synthetic peptide library, indicate this by selecting *synthetic* or *not synthetic*" + ) + df = ParsingModule.fill_in_from_list( + template_df, selection, ["synthetic", "not synthetic"] + ) + update_session_state(df) + +if selection == "comment[depletion]": + depl = st.selectbox("Is the sample depleted?", ("","Yes", "No")) + if depl == "Yes": + st.write("Indicate depleted or bound fraction directly in the SDRF file") + df = ParsingModule.fill_in_from_list( + template_df, selection, ["depleted fraction", "bound fraction"] + ) + update_session_state(df) + if depl == "No": + template_df["comment[depletion]"] = "not depletion" + st.session_state["template_df"] = template_df + st.experimental_rerun() + +if selection == "comment[modification parameters]": + st.write(""" First select the modifications that are in your sample using the drop down autocomplete menu. After selection you will need to choose the modification type, position and target amino acid. + Modification type can be fixed, variable or annotated. Annotated is used to search for all the occurrences of the modification into an annotated protein database file like UNIPROT XML or PEFF. + Position can be anywhere, protein N-term, protein C-term, any N-term or any C-term. + Target amino acid can be any amino acid or X if it's not in the list. Yoy can also select multiple amino acids.""") + st.write(""" If the modification of your choice is not available in the drop down list, select "Other" and input the modification name, chemical formula and mass of your custom modification.""") + st.write(""" The final modification will be formatted following the SDRF guidelines after which you can click on "Submit modifications".""") + unimod = data_dict["unimod_dict"] + inputs = sorted(list(unimod.keys())) + inputs.append("Other") + mt = ["Fixed", "Variable", "Annotated"] + pp = ["Anywhere", "Protein N-term", "Protein C-term", "Any N-term", "Any C-term"] + ta = ["X","G","A","L","M","F","W","K","Q","E","S","P","V","I","C","Y","H","R","N","D","T"] + mods_sel = st.multiselect("Select the modifications present in your data", inputs) + sdrf_mods = [] + st.session_state["sdrf_mods"] = sdrf_mods + + for i in mods_sel: + st.write(f"**{i}**") + col1, col2, col3 = st.columns(3) + + + with col1: + mt_sel = st.selectbox("Select the modification type", mt, key=f"mt_{i}") + with col2: + pp_sel = st.selectbox( + "Select the position of the modification", pp, key=f"pp_{i}" + ) + with col3: + ta_sel = st.multiselect("Select the target amino acid", ta, key=f"ta_{i}") + ta_sel = ",".join(ta_sel) + + if i == "Other": + col4, col5, col6 = st.columns(3) + with col4: + name = st.text_input( + "Input a logical name" + ) + with col5: + form = st.text_input("Input the chemical formula") + with col6: + mass = st.text_input("Input the molecular mass") + + final_str = f"NT={name};MT={mt_sel};PP={pp_sel};TA={ta_sel};CF={form};MM={mass}" + st.session_state["sdrf_mods"].append(final_str) + st.write( + f""" **Final SDRF notation of modification:** + {final_str}""" + ) + else: + final_str = f"{unimod[i]};MT={mt_sel};PP={pp_sel};TA={ta_sel}" + st.session_state["sdrf_mods"].append(final_str) + st.write( + f"""**Final SDRF notation of modification:** + {final_str}""" + ) + st.write(f"Confirmed modifications contain: {st.session_state['sdrf_mods']}") + submit = st.checkbox( + "Submit modifications", + help="Click to add the modifications to the SDRF file. If everything looks fine, click again", + ) + + if submit: + # for every element in the list sdrf_mods + # add it to the template_df as a value in a new column with name selection_1, selection_2, selection_3, etc + # then update the session state + #get the index of the original column + index = template_df.columns.get_loc(selection) + #insert the new column next to the original index + for i, mod in enumerate(sdrf_mods): + st.write(i, mod) + if i == 0: + template_df[f"{selection}"] = mod + else: + template_df.insert(index+i, f"{selection}_{i}", mod) + index += 1 + + st.session_state["template_df"] = template_df + st.write(template_df) + +if selection == "undo column": + st.write("""Here you can select a column that you want to reannotate. + Upon clicking the column the current values will be removed and you can reannotate the column. + """) + col1, col2 = st.columns(2) + with col1: + sel = st.multiselect("Select the column(s) you want to reannotate", template_df.columns) + with col2: + if st.button("Reannotate"): + template_df[sel] = np.nan + st.session_state["template_df"] = template_df + st.experimental_rerun() + diff --git a/.history/unimod_dict_20240927125628.json b/.history/unimod_dict_20240927125628.json new file mode 100644 index 0000000..d2c7ffe --- /dev/null +++ b/.history/unimod_dict_20240927125628.json @@ -0,0 +1 @@ +{"Acetyl": "NT=Acetyl;AC=1;CF=H(2) C(2) O;MM=42.010565", "Amidated": "NT=Amidated;AC=2;CF=H N O(-1);MM=-0.984016", "Biotin": "NT=Biotin;AC=3;CF=H(14) C(10) N(2) O(2) S;MM=226.077598", "Carbamidomethyl": "NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464", "Carbamyl": "NT=Carbamyl;AC=5;CF=H C N O;MM=43.005814", "Carboxymethyl": "NT=Carboxymethyl;AC=6;CF=H(2) C(2) O(2);MM=58.005479", "Deamidated": "NT=Deamidated;AC=7;CF=H(-1) N(-1) O;MM=0.984016", "ICAT-G": "NT=ICAT-G;AC=8;CF=H(38) C(22) N(4) O(6) S;MM=486.251206", "ICAT-G:2H(8)": "NT=ICAT-G:2H(8);AC=9;CF=H(30) 2H(8) C(22) N(4) O(6) S;MM=494.30142", "Met->Hse": "NT=Met->Hse;AC=10;CF=H(-2) C(-1) O S(-1);MM=-29.992806", "Met->Hsl": "NT=Met->Hsl;AC=11;CF=H(-4) C(-1) S(-1);MM=-48.003371", "ICAT-D:2H(8)": "NT=ICAT-D:2H(8);AC=12;CF=H(26) 2H(8) C(20) N(4) O(5) S;MM=450.275205", "ICAT-D": "NT=ICAT-D;AC=13;CF=H(34) C(20) N(4) O(5) S;MM=442.224991", "NIPCAM": "NT=NIPCAM;AC=17;CF=H(9) C(5) N O;MM=99.068414", "PEO-Iodoacetyl-LC-Biotin": "NT=PEO-Iodoacetyl-LC-Biotin;AC=20;CF=H(30) C(18) N(4) O(5) S;MM=414.193691", "Phospho": "NT=Phospho;AC=21;CF=H O(3) P;MM=79.966331", "Dehydrated": "NT=Dehydrated;AC=23;CF=H(-2) O(-1);MM=-18.010565", "Propionamide": "NT=Propionamide;AC=24;CF=H(5) C(3) N O;MM=71.037114", "Pyridylacetyl": "NT=Pyridylacetyl;AC=25;CF=H(5) C(7) N O;MM=119.037114", "Pyro-carbamidomethyl": "NT=Pyro-carbamidomethyl;AC=26;CF=C(2) O;MM=39.994915", "Glu->pyro-Glu": "NT=Glu->pyro-Glu;AC=27;CF=H(-2) O(-1);MM=-18.010565", "Gln->pyro-Glu": "NT=Gln->pyro-Glu;AC=28;CF=H(-3) N(-1);MM=-17.026549", "SMA": "NT=SMA;AC=29;CF=H(9) C(6) N O(2);MM=127.063329", "Cation:Na": "NT=Cation:Na;AC=30;CF=H(-1) Na;MM=21.981943", "Pyridylethyl": "NT=Pyridylethyl;AC=31;CF=H(7) C(7) N;MM=105.057849", "Methyl": "NT=Methyl;AC=34;CF=H(2) C;MM=14.01565", "Oxidation": "NT=Oxidation;AC=35;CF=O;MM=15.994915", "Dimethyl": "NT=Dimethyl;AC=36;CF=H(4) C(2);MM=28.0313", "Trimethyl": "NT=Trimethyl;AC=37;CF=H(6) C(3);MM=42.04695", "Methylthio": "NT=Methylthio;AC=39;CF=H(2) C S;MM=45.987721", "Sulfo": "NT=Sulfo;AC=40;CF=O(3) S;MM=79.956815", "Hex": "NT=Hex;AC=41;CF=Hex;MM=162.052824", "Lipoyl": "NT=Lipoyl;AC=42;CF=H(12) C(8) O S(2);MM=188.032956", "HexNAc": "NT=HexNAc;AC=43;CF=HexNAc;MM=203.079373", "Farnesyl": "NT=Farnesyl;AC=44;CF=H(24) C(15);MM=204.187801", "Myristoyl": "NT=Myristoyl;AC=45;CF=H(26) C(14) O;MM=210.198366", "PyridoxalPhosphate": "NT=PyridoxalPhosphate;AC=46;CF=H(8) C(8) N O(5) P;MM=229.014009", "Palmitoyl": "NT=Palmitoyl;AC=47;CF=H(30) C(16) O;MM=238.229666", "GeranylGeranyl": "NT=GeranylGeranyl;AC=48;CF=H(32) C(20);MM=272.250401", "Phosphopantetheine": "NT=Phosphopantetheine;AC=49;CF=H(21) C(11) N(2) O(6) P S;MM=340.085794", "FAD": "NT=FAD;AC=50;CF=H(31) C(27) N(9) O(15) P(2);MM=783.141486", "Tripalmitate": "NT=Tripalmitate;AC=51;CF=H(96) C(51) O(5);MM=788.725777", "Guanidinyl": "NT=Guanidinyl;AC=52;CF=H(2) C N(2);MM=42.021798", "HNE": "NT=HNE;AC=53;CF=H(16) C(9) O(2);MM=156.11503", "Glucuronyl": "NT=Glucuronyl;AC=54;CF=HexA;MM=176.032088", "Glutathione": "NT=Glutathione;AC=55;CF=H(15) C(10) N(3) O(6) S;MM=305.068156", "Acetyl:2H(3)": "NT=Acetyl:2H(3);AC=56;CF=H(-1) 2H(3) C(2) O;MM=45.029395", "Propionyl": "NT=Propionyl;AC=58;CF=H(4) C(3) O;MM=56.026215", "Propionyl:13C(3)": "NT=Propionyl:13C(3);AC=59;CF=H(4) 13C(3) O;MM=59.036279", "GIST-Quat": "NT=GIST-Quat;AC=60;CF=H(13) C(7) N O;MM=127.099714", "GIST-Quat:2H(3)": "NT=GIST-Quat:2H(3);AC=61;CF=H(10) 2H(3) C(7) N O;MM=130.118544", "GIST-Quat:2H(6)": "NT=GIST-Quat:2H(6);AC=62;CF=H(7) 2H(6) C(7) N O;MM=133.137375", "GIST-Quat:2H(9)": "NT=GIST-Quat:2H(9);AC=63;CF=H(4) 2H(9) C(7) N O;MM=136.156205", "Succinyl": "NT=Succinyl;AC=64;CF=H(4) C(4) O(3);MM=100.016044", "Succinyl:2H(4)": "NT=Succinyl:2H(4);AC=65;CF=2H(4) C(4) O(3);MM=104.041151", "Succinyl:13C(4)": "NT=Succinyl:13C(4);AC=66;CF=H(4) 13C(4) O(3);MM=104.029463", "Iminobiotin": "NT=Iminobiotin;AC=89;CF=H(15) C(10) N(3) O S;MM=225.093583", "ESP": "NT=ESP;AC=90;CF=H(26) C(16) N(4) O(2) S;MM=338.177647", "ESP:2H(10)": "NT=ESP:2H(10);AC=91;CF=H(16) 2H(10) C(16) N(4) O(2) S;MM=348.240414", "NHS-LC-Biotin": "NT=NHS-LC-Biotin;AC=92;CF=H(25) C(16) N(3) O(3) S;MM=339.161662", "EDT-maleimide-PEO-biotin": "NT=EDT-maleimide-PEO-biotin;AC=93;CF=H(39) C(25) N(5) O(6) S(3);MM=601.206246", "IMID": "NT=IMID;AC=94;CF=H(4) C(3) N(2);MM=68.037448", "IMID:2H(4)": "NT=IMID:2H(4);AC=95;CF=2H(4) C(3) N(2);MM=72.062555", "Propionamide:2H(3)": "NT=Propionamide:2H(3);AC=97;CF=H(2) 2H(3) C(3) N O;MM=74.055944", "ICAT-C": "NT=ICAT-C;AC=105;CF=H(17) C(10) N(3) O(3);MM=227.126991", "ICAT-C:13C(9)": "NT=ICAT-C:13C(9);AC=106;CF=H(17) C 13C(9) N(3) O(3);MM=236.157185", "FormylMet": "NT=FormylMet;AC=107;CF=H(9) C(6) N O(2) S;MM=159.035399", "Nethylmaleimide": "NT=Nethylmaleimide;AC=108;CF=H(7) C(6) N O(2);MM=125.047679", "OxLysBiotinRed": "NT=OxLysBiotinRed;AC=112;CF=H(26) C(16) N(4) O(3) S;MM=354.172562", "OxLysBiotin": "NT=OxLysBiotin;AC=113;CF=H(24) C(16) N(4) O(3) S;MM=352.156911", "OxProBiotinRed": "NT=OxProBiotinRed;AC=114;CF=H(29) C(16) N(5) O(3) S;MM=371.199111", "OxProBiotin": "NT=OxProBiotin;AC=115;CF=H(27) C(16) N(5) O(3) S;MM=369.183461", "OxArgBiotin": "NT=OxArgBiotin;AC=116;CF=H(22) C(15) N(2) O(3) S;MM=310.135113", "OxArgBiotinRed": "NT=OxArgBiotinRed;AC=117;CF=H(24) C(15) N(2) O(3) S;MM=312.150763", "EDT-iodoacetyl-PEO-biotin": "NT=EDT-iodoacetyl-PEO-biotin;AC=118;CF=H(34) C(20) N(4) O(4) S(3);MM=490.174218", "IBTP": "NT=IBTP;AC=119;CF=H(21) C(22) P;MM=316.138088", "GG": "NT=GG;AC=121;CF=H(6) C(4) N(2) O(2);MM=114.042927", "Formyl": "NT=Formyl;AC=122;CF=C O;MM=27.994915", "ICAT-H": "NT=ICAT-H;AC=123;CF=H(20) C(15) N O(6) Cl;MM=345.097915", "ICAT-H:13C(6)": "NT=ICAT-H:13C(6);AC=124;CF=H(20) C(9) 13C(6) N O(6) Cl;MM=351.118044", "Xlink:DTSSP[88]": "NT=Xlink:DTSSP[88];AC=126;CF=H(4) C(3) O S;MM=87.998285", "Fluoro": "NT=Fluoro;AC=127;CF=H(-1) F;MM=17.990578", "Fluorescein": "NT=Fluorescein;AC=128;CF=H(13) C(22) N O(6);MM=387.074287", "Iodo": "NT=Iodo;AC=129;CF=H(-1) I;MM=125.896648", "Diiodo": "NT=Diiodo;AC=130;CF=H(-2) I(2);MM=251.793296", "Triiodo": "NT=Triiodo;AC=131;CF=H(-3) I(3);MM=377.689944", "Myristoleyl": "NT=Myristoleyl;AC=134;CF=H(24) C(14) O;MM=208.182715", "Myristoyl+Delta:H(-4)": "NT=Myristoyl+Delta:H(-4);AC=135;CF=H(22) C(14) O;MM=206.167065", "Benzoyl": "NT=Benzoyl;AC=136;CF=H(4) C(7) O;MM=104.026215", "Hex(5)HexNAc(2)": "NT=Hex(5)HexNAc(2);AC=137;CF=Hex(5) HexNAc(2);MM=1216.422863", "Dansyl": "NT=Dansyl;AC=139;CF=H(11) C(12) N O(2) S;MM=233.051049", "a-type-ion": "NT=a-type-ion;AC=140;CF=H(-2) C(-1) O(-2);MM=-46.005479", "Amidine": "NT=Amidine;AC=141;CF=H(3) C(2) N;MM=41.026549", "HexNAc(1)dHex(1)": "NT=HexNAc(1)dHex(1);AC=142;CF=dHex HexNAc;MM=349.137281", "HexNAc(2)": "NT=HexNAc(2);AC=143;CF=HexNAc(2);MM=406.158745", "Hex(3)": "NT=Hex(3);AC=144;CF=Hex(3);MM=486.158471", "HexNAc(1)dHex(2)": "NT=HexNAc(1)dHex(2);AC=145;CF=dHex(2) HexNAc;MM=495.19519", "Hex(1)HexNAc(1)dHex(1)": "NT=Hex(1)HexNAc(1)dHex(1);AC=146;CF=dHex Hex HexNAc;MM=511.190105", "HexNAc(2)dHex(1)": "NT=HexNAc(2)dHex(1);AC=147;CF=dHex HexNAc(2);MM=552.216654", "Hex(1)HexNAc(2)": "NT=Hex(1)HexNAc(2);AC=148;CF=Hex HexNAc(2);MM=568.211569", "Hex(1)HexNAc(1)NeuAc(1)": "NT=Hex(1)HexNAc(1)NeuAc(1);AC=149;CF=Hex HexNAc NeuAc;MM=656.227613", "HexNAc(2)dHex(2)": "NT=HexNAc(2)dHex(2);AC=150;CF=dHex(2) HexNAc(2);MM=698.274563", "Hex(1)HexNAc(2)Pent(1)": "NT=Hex(1)HexNAc(2)Pent(1);AC=151;CF=Pent Hex HexNAc(2);MM=700.253828", "Hex(1)HexNAc(2)dHex(1)": "NT=Hex(1)HexNAc(2)dHex(1);AC=152;CF=dHex Hex HexNAc(2);MM=714.269478", "Hex(2)HexNAc(2)": "NT=Hex(2)HexNAc(2);AC=153;CF=Hex(2) HexNAc(2);MM=730.264392", "Hex(3)HexNAc(1)Pent(1)": "NT=Hex(3)HexNAc(1)Pent(1);AC=154;CF=Pent Hex(3) HexNAc;MM=821.280102", "Hex(1)HexNAc(2)dHex(1)Pent(1)": "NT=Hex(1)HexNAc(2)dHex(1)Pent(1);AC=155;CF=Pent dHex Hex HexNAc(2);MM=846.311736", "Hex(1)HexNAc(2)dHex(2)": "NT=Hex(1)HexNAc(2)dHex(2);AC=156;CF=dHex(2) Hex HexNAc(2);MM=860.327386", "Hex(2)HexNAc(2)Pent(1)": "NT=Hex(2)HexNAc(2)Pent(1);AC=157;CF=Pent Hex(2) HexNAc(2);MM=862.306651", "Hex(2)HexNAc(2)dHex(1)": "NT=Hex(2)HexNAc(2)dHex(1);AC=158;CF=dHex Hex(2) HexNAc(2);MM=876.322301", "Hex(3)HexNAc(2)": "NT=Hex(3)HexNAc(2);AC=159;CF=Hex(3) HexNAc(2);MM=892.317216", "Hex(1)HexNAc(1)NeuAc(2)": "NT=Hex(1)HexNAc(1)NeuAc(2);AC=160;CF=Hex HexNAc NeuAc(2);MM=947.323029", "Hex(3)HexNAc(2)Phos(1)": "NT=Hex(3)HexNAc(2)Phos(1);AC=161;CF=H O(3) P Hex(3) HexNAc(2);MM=972.283547", "Delta:S(-1)Se(1)": "NT=Delta:S(-1)Se(1);AC=162;CF=S(-1) Se;MM=47.944449", "Delta:H(-1)N(-1)18O(1)": "NT=Delta:H(-1)N(-1)18O(1);AC=170;CF=H(-1) N(-1) 18O;MM=2.988261", "NBS:13C(6)": "NT=NBS:13C(6);AC=171;CF=H(3) 13C(6) N O(2) S;MM=159.008578", "NBS": "NT=NBS;AC=172;CF=H(3) C(6) N O(2) S;MM=152.988449", "BHT": "NT=BHT;AC=176;CF=H(22) C(15) O;MM=218.167065", "DAET": "NT=DAET;AC=178;CF=H(9) C(4) N O(-1) S;MM=87.050655", "Label:13C(9)": "NT=Label:13C(9);AC=184;CF=C(-9) 13C(9);MM=9.030193", "Label:13C(9)+Phospho": "NT=Label:13C(9)+Phospho;AC=185;CF=H C(-9) 13C(9) O(3) P;MM=88.996524", "HPG": "NT=HPG;AC=186;CF=H(4) C(8) O(2);MM=132.021129", "2HPG": "NT=2HPG;AC=187;CF=H(10) C(16) O(5);MM=282.052824", "Label:13C(6)": "NT=Label:13C(6);AC=188;CF=C(-6) 13C(6);MM=6.020129", "Label:18O(2)": "NT=Label:18O(2);AC=193;CF=O(-2) 18O(2);MM=4.008491", "AccQTag": "NT=AccQTag;AC=194;CF=H(6) C(10) N(2) O;MM=170.048013", "QAT": "NT=QAT;AC=195;CF=H(19) C(9) N(2) O;MM=171.149738", "QAT:2H(3)": "NT=QAT:2H(3);AC=196;CF=H(16) 2H(3) C(9) N(2) O;MM=174.168569", "EQAT": "NT=EQAT;AC=197;CF=H(20) C(10) N(2) O;MM=184.157563", "EQAT:2H(5)": "NT=EQAT:2H(5);AC=198;CF=H(15) 2H(5) C(10) N(2) O;MM=189.188947", "Dimethyl:2H(4)": "NT=Dimethyl:2H(4);AC=199;CF=2H(4) C(2);MM=32.056407", "Ethanedithiol": "NT=Ethanedithiol;AC=200;CF=H(4) C(2) O(-1) S(2);MM=75.980527", "Delta:H(6)C(6)O(1)": "NT=Delta:H(6)C(6)O(1);AC=205;CF=H(6) C(6) O;MM=94.041865", "Delta:H(4)C(3)O(1)": "NT=Delta:H(4)C(3)O(1);AC=206;CF=H(4) C(3) O;MM=56.026215", "Delta:H(2)C(3)": "NT=Delta:H(2)C(3);AC=207;CF=H(2) C(3);MM=38.01565", "Delta:H(4)C(6)": "NT=Delta:H(4)C(6);AC=208;CF=H(4) C(6);MM=76.0313", "Delta:H(8)C(6)O(2)": "NT=Delta:H(8)C(6)O(2);AC=209;CF=H(8) C(6) O(2);MM=112.05243", "NEIAA": "NT=NEIAA;AC=211;CF=H(7) C(4) N O;MM=85.052764", "NEIAA:2H(5)": "NT=NEIAA:2H(5);AC=212;CF=H(2) 2H(5) C(4) N O;MM=90.084148", "ADP-Ribosyl": "NT=ADP-Ribosyl;AC=213;CF=H(13) C(10) N(5) O(9) P(2) Pent;MM=541.06111", "iTRAQ4plex": "NT=iTRAQ4plex;AC=214;CF=H(12) C(4) 13C(3) N 15N O;MM=144.102063", "IGBP": "NT=IGBP;AC=243;CF=H(13) C(12) N(2) O(2) Br;MM=296.016039", "Crotonaldehyde": "NT=Crotonaldehyde;AC=253;CF=H(6) C(4) O;MM=70.041865", "Delta:H(2)C(2)": "NT=Delta:H(2)C(2);AC=254;CF=H(2) C(2);MM=26.01565", "Delta:H(4)C(2)": "NT=Delta:H(4)C(2);AC=255;CF=H(4) C(2);MM=28.0313", "Delta:H(4)C(3)": "NT=Delta:H(4)C(3);AC=256;CF=H(4) C(3);MM=40.0313", "Label:18O(1)": "NT=Label:18O(1);AC=258;CF=O(-1) 18O;MM=2.004246", "Label:13C(6)15N(2)": "NT=Label:13C(6)15N(2);AC=259;CF=C(-6) 13C(6) N(-2) 15N(2);MM=8.014199", "Thiophospho": "NT=Thiophospho;AC=260;CF=H O(2) P S;MM=95.943487", "SPITC": "NT=SPITC;AC=261;CF=H(5) C(7) N O(3) S(2);MM=214.971084", "Label:2H(3)": "NT=Label:2H(3);AC=262;CF=H(-3) 2H(3);MM=3.01883", "PET": "NT=PET;AC=264;CF=H(7) C(7) N O(-1) S;MM=121.035005", "Label:13C(6)15N(4)": "NT=Label:13C(6)15N(4);AC=267;CF=C(-6) 13C(6) N(-4) 15N(4);MM=10.008269", "Label:13C(5)15N(1)": "NT=Label:13C(5)15N(1);AC=268;CF=C(-5) 13C(5) N(-1) 15N;MM=6.013809", "Label:13C(9)15N(1)": "NT=Label:13C(9)15N(1);AC=269;CF=C(-9) 13C(9) N(-1) 15N;MM=10.027228", "Cytopiloyne": "NT=Cytopiloyne;AC=270;CF=H(22) C(19) O(7);MM=362.136553", "Cytopiloyne+water": "NT=Cytopiloyne+water;AC=271;CF=H(24) C(19) O(8);MM=380.147118", "CAF": "NT=CAF;AC=272;CF=H(4) C(3) O(4) S;MM=135.983029", "Nitrosyl": "NT=Nitrosyl;AC=275;CF=H(-1) N O;MM=28.990164", "AEBS": "NT=AEBS;AC=276;CF=H(9) C(8) N O(2) S;MM=183.035399", "Ethanolyl": "NT=Ethanolyl;AC=278;CF=H(4) C(2) O;MM=44.026215", "Ethyl": "NT=Ethyl;AC=280;CF=H(4) C(2);MM=28.0313", "CoenzymeA": "NT=CoenzymeA;AC=281;CF=H(34) C(21) N(7) O(16) P(3) S;MM=765.09956", "Methyl:2H(2)": "NT=Methyl:2H(2);AC=284;CF=2H(2) C;MM=16.028204", "SulfanilicAcid": "NT=SulfanilicAcid;AC=285;CF=H(5) C(6) N O(2) S;MM=155.004099", "SulfanilicAcid:13C(6)": "NT=SulfanilicAcid:13C(6);AC=286;CF=H(5) 13C(6) N O(2) S;MM=161.024228", "Trp->Oxolactone": "NT=Trp->Oxolactone;AC=288;CF=H(-2) O;MM=13.979265", "Biotin-PEO-Amine": "NT=Biotin-PEO-Amine;AC=289;CF=H(28) C(16) N(4) O(3) S;MM=356.188212", "Biotin-HPDP": "NT=Biotin-HPDP;AC=290;CF=H(32) C(19) N(4) O(3) S(2);MM=428.191582", "Delta:Hg(1)": "NT=Delta:Hg(1);AC=291;CF=Hg;MM=201.970617", "IodoU-AMP": "NT=IodoU-AMP;AC=292;CF=H(11) C(9) N(2) O(9) P;MM=322.020217", "CAMthiopropanoyl": "NT=CAMthiopropanoyl;AC=293;CF=H(7) C(5) N O(2) S;MM=145.019749", "IED-Biotin": "NT=IED-Biotin;AC=294;CF=H(22) C(14) N(4) O(3) S;MM=326.141261", "dHex": "NT=dHex;AC=295;CF=dHex;MM=146.057909", "Methyl:2H(3)": "NT=Methyl:2H(3);AC=298;CF=H(-1) 2H(3) C;MM=17.03448", "Carboxy": "NT=Carboxy;AC=299;CF=C O(2);MM=43.989829", "Bromobimane": "NT=Bromobimane;AC=301;CF=H(10) C(10) N(2) O(2);MM=190.074228", "Menadione": "NT=Menadione;AC=302;CF=H(6) C(11) O(2);MM=170.036779", "DeStreak": "NT=DeStreak;AC=303;CF=H(4) C(2) O S;MM=75.998285", "dHex(1)Hex(3)HexNAc(4)": "NT=dHex(1)Hex(3)HexNAc(4);AC=305;CF=dHex Hex(3) HexNAc(4);MM=1444.53387", "dHex(1)Hex(4)HexNAc(4)": "NT=dHex(1)Hex(4)HexNAc(4);AC=307;CF=dHex Hex(4) HexNAc(4);MM=1606.586693", "dHex(1)Hex(5)HexNAc(4)": "NT=dHex(1)Hex(5)HexNAc(4);AC=308;CF=dHex Hex(5) HexNAc(4);MM=1768.639517", "Hex(3)HexNAc(4)": "NT=Hex(3)HexNAc(4);AC=309;CF=Hex(3) HexNAc(4);MM=1298.475961", "Hex(4)HexNAc(4)": "NT=Hex(4)HexNAc(4);AC=310;CF=Hex(4) HexNAc(4);MM=1460.528784", "Hex(5)HexNAc(4)": "NT=Hex(5)HexNAc(4);AC=311;CF=Hex(5) HexNAc(4);MM=1622.581608", "Cysteinyl": "NT=Cysteinyl;AC=312;CF=H(5) C(3) N O(2) S;MM=119.004099", "Lys-loss": "NT=Lys-loss;AC=313;CF=H(-12) C(-6) N(-2) O(-1);MM=-128.094963", "Nmethylmaleimide": "NT=Nmethylmaleimide;AC=314;CF=H(5) C(5) N O(2);MM=111.032028", "DimethylpyrroleAdduct": "NT=DimethylpyrroleAdduct;AC=316;CF=H(6) C(6);MM=78.04695", "Delta:H(2)C(5)": "NT=Delta:H(2)C(5);AC=318;CF=H(2) C(5);MM=62.01565", "Delta:H(2)C(3)O(1)": "NT=Delta:H(2)C(3)O(1);AC=319;CF=H(2) C(3) O;MM=54.010565", "Nethylmaleimide+water": "NT=Nethylmaleimide+water;AC=320;CF=H(9) C(6) N O(3);MM=143.058243", "Xlink:B10621": "NT=Xlink:B10621;AC=323;CF=H(30) C(31) N(4) O(6) S I;MM=713.093079", "Xlink:DTBP[87]": "NT=Xlink:DTBP[87];AC=324;CF=H(5) C(3) N S;MM=87.01427", "FP-Biotin": "NT=FP-Biotin;AC=325;CF=H(49) C(27) N(4) O(5) P S;MM=572.316129", "Delta:H(4)C(2)O(-1)S(1)": "NT=Delta:H(4)C(2)O(-1)S(1);AC=327;CF=H(4) C(2) O(-1) S;MM=44.008456", "Methyl:2H(3)13C(1)": "NT=Methyl:2H(3)13C(1);AC=329;CF=H(-1) 2H(3) 13C;MM=18.037835", "Dimethyl:2H(6)13C(2)": "NT=Dimethyl:2H(6)13C(2);AC=330;CF=H(-2) 2H(6) 13C(2);MM=36.07567", "Thiophos-S-S-biotin": "NT=Thiophos-S-S-biotin;AC=332;CF=H(34) C(19) N(4) O(5) P S(3);MM=525.142894", "Can-FP-biotin": "NT=Can-FP-biotin;AC=333;CF=H(34) C(19) N(3) O(5) P S;MM=447.195679", "HNE+Delta:H(2)": "NT=HNE+Delta:H(2);AC=335;CF=H(18) C(9) O(2);MM=158.13068", "Methylamine": "NT=Methylamine;AC=337;CF=H(3) C N O(-1);MM=13.031634", "Bromo": "NT=Bromo;AC=340;CF=H(-1) Br;MM=77.910511", "Amino": "NT=Amino;AC=342;CF=H N;MM=15.010899", "Argbiotinhydrazide": "NT=Argbiotinhydrazide;AC=343;CF=H(13) C(9) N O(2) S;MM=199.066699", "Arg->GluSA": "NT=Arg->GluSA;AC=344;CF=H(-5) C(-1) N(-3) O;MM=-43.053433", "Trioxidation": "NT=Trioxidation;AC=345;CF=O(3);MM=47.984744", "His->Asn": "NT=His->Asn;AC=348;CF=H(-1) C(-2) N(-1) O;MM=-23.015984", "His->Asp": "NT=His->Asp;AC=349;CF=H(-2) C(-2) N(-2) O(2);MM=-22.031969", "Trp->Hydroxykynurenin": "NT=Trp->Hydroxykynurenin;AC=350;CF=C(-1) O(2);MM=19.989829", "Trp->Kynurenin": "NT=Trp->Kynurenin;AC=351;CF=C(-1) O;MM=3.994915", "Lys->Allysine": "NT=Lys->Allysine;AC=352;CF=H(-3) N(-1) O;MM=-1.031634", "Lysbiotinhydrazide": "NT=Lysbiotinhydrazide;AC=353;CF=H(15) C(10) N(3) O(2) S;MM=241.088497", "Nitro": "NT=Nitro;AC=354;CF=H(-1) N O(2);MM=44.985078", "probiotinhydrazide": "NT=probiotinhydrazide;AC=357;CF=H(18) C(10) N(4) O(2) S;MM=258.115047", "Pro->pyro-Glu": "NT=Pro->pyro-Glu;AC=359;CF=H(-2) O;MM=13.979265", "Pro->Pyrrolidinone": "NT=Pro->Pyrrolidinone;AC=360;CF=H(-2) C(-1) O(-1);MM=-30.010565", "Thrbiotinhydrazide": "NT=Thrbiotinhydrazide;AC=361;CF=H(16) C(10) N(4) O S;MM=240.104482", "Diisopropylphosphate": "NT=Diisopropylphosphate;AC=362;CF=H(13) C(6) O(3) P;MM=164.060231", "Isopropylphospho": "NT=Isopropylphospho;AC=363;CF=H(7) C(3) O(3) P;MM=122.013281", "ICPL:13C(6)": "NT=ICPL:13C(6);AC=364;CF=H(3) 13C(6) N O;MM=111.041593", "ICPL": "NT=ICPL;AC=365;CF=H(3) C(6) N O;MM=105.021464", "Deamidated:18O(1)": "NT=Deamidated:18O(1);AC=366;CF=H(-1) N(-1) 18O;MM=2.988261", "Cys->Dha": "NT=Cys->Dha;AC=368;CF=H(-2) S(-1);MM=-33.987721", "Pro->Pyrrolidone": "NT=Pro->Pyrrolidone;AC=369;CF=C(-1) O(-1);MM=-27.994915", "HMVK": "NT=HMVK;AC=371;CF=H(6) C(4) O(2);MM=86.036779", "Arg->Orn": "NT=Arg->Orn;AC=372;CF=H(-2) C(-1) N(-2);MM=-42.021798", "Dehydro": "NT=Dehydro;AC=374;CF=H(-1);MM=-1.007825", "Diphthamide": "NT=Diphthamide;AC=375;CF=H(14) C(7) N(2) O;MM=142.110613", "Hydroxyfarnesyl": "NT=Hydroxyfarnesyl;AC=376;CF=H(24) C(15) O;MM=220.182715", "Diacylglycerol": "NT=Diacylglycerol;AC=377;CF=H(68) C(37) O(4);MM=576.511761", "Carboxyethyl": "NT=Carboxyethyl;AC=378;CF=H(4) C(3) O(2);MM=72.021129", "Hypusine": "NT=Hypusine;AC=379;CF=H(9) C(4) N O;MM=87.068414", "Retinylidene": "NT=Retinylidene;AC=380;CF=H(26) C(20);MM=266.203451", "Lys->AminoadipicAcid": "NT=Lys->AminoadipicAcid;AC=381;CF=H(-3) N(-1) O(2);MM=14.96328", "Cys->PyruvicAcid": "NT=Cys->PyruvicAcid;AC=382;CF=H(-3) N(-1) O S(-1);MM=-33.003705", "Ammonia-loss": "NT=Ammonia-loss;AC=385;CF=H(-3) N(-1);MM=-17.026549", "Phycocyanobilin": "NT=Phycocyanobilin;AC=387;CF=H(38) C(33) N(4) O(6);MM=586.279135", "Phycoerythrobilin": "NT=Phycoerythrobilin;AC=388;CF=H(40) C(33) N(4) O(6);MM=588.294785", "Phytochromobilin": "NT=Phytochromobilin;AC=389;CF=H(36) C(33) N(4) O(6);MM=584.263485", "Heme": "NT=Heme;AC=390;CF=H(32) C(34) N(4) O(4) Fe;MM=616.177295", "Molybdopterin": "NT=Molybdopterin;AC=391;CF=H(11) C(10) N(5) O(8) P S(2) Mo;MM=521.884073", "Quinone": "NT=Quinone;AC=392;CF=H(-2) O(2);MM=29.974179", "Glucosylgalactosyl": "NT=Glucosylgalactosyl;AC=393;CF=O Hex(2);MM=340.100562", "GPIanchor": "NT=GPIanchor;AC=394;CF=H(6) C(2) N O(3) P;MM=123.00853", "PhosphoribosyldephosphoCoA": "NT=PhosphoribosyldephosphoCoA;AC=395;CF=H(42) C(26) N(7) O(19) P(3) S;MM=881.146904", "GlycerylPE": "NT=GlycerylPE;AC=396;CF=H(12) C(5) N O(5) P;MM=197.04531", "Triiodothyronine": "NT=Triiodothyronine;AC=397;CF=H C(6) O I(3);MM=469.716159", "Thyroxine": "NT=Thyroxine;AC=398;CF=C(6) O I(4);MM=595.612807", "Tyr->Dha": "NT=Tyr->Dha;AC=400;CF=H(-6) C(-6) O(-1);MM=-94.041865", "Didehydro": "NT=Didehydro;AC=401;CF=H(-2);MM=-2.01565", "Cys->Oxoalanine": "NT=Cys->Oxoalanine;AC=402;CF=H(-2) O S(-1);MM=-17.992806", "Ser->LacticAcid": "NT=Ser->LacticAcid;AC=403;CF=H(-1) N(-1);MM=-15.010899", "Phosphoadenosine": "NT=Phosphoadenosine;AC=405;CF=H(12) C(10) N(5) O(6) P;MM=329.05252", "Hydroxycinnamyl": "NT=Hydroxycinnamyl;AC=407;CF=H(6) C(9) O(2);MM=146.036779", "Glycosyl": "NT=Glycosyl;AC=408;CF=H(-2) C(-1) Hex;MM=148.037173", "FMNH": "NT=FMNH;AC=409;CF=H(19) C(17) N(4) O(9) P;MM=454.088965", "Archaeol": "NT=Archaeol;AC=410;CF=H(86) C(43) O(2);MM=634.662782", "Phenylisocyanate": "NT=Phenylisocyanate;AC=411;CF=H(5) C(7) N O;MM=119.037114", "Phenylisocyanate:2H(5)": "NT=Phenylisocyanate:2H(5);AC=412;CF=2H(5) C(7) N O;MM=124.068498", "Phosphoguanosine": "NT=Phosphoguanosine;AC=413;CF=H(12) C(10) N(5) O(7) P;MM=345.047435", "Hydroxymethyl": "NT=Hydroxymethyl;AC=414;CF=H(2) C O;MM=30.010565", "MolybdopterinGD+Delta:S(-1)Se(1)": "NT=MolybdopterinGD+Delta:S(-1)Se(1);AC=415;CF=H(47) C(40) N(20) O(26) P(4) S(3) Se Mo;MM=1620.930224", "Dipyrrolylmethanemethyl": "NT=Dipyrrolylmethanemethyl;AC=416;CF=H(22) C(20) N(2) O(8);MM=418.137616", "PhosphoUridine": "NT=PhosphoUridine;AC=417;CF=H(11) C(9) N(2) O(8) P;MM=306.025302", "Glycerophospho": "NT=Glycerophospho;AC=419;CF=H(7) C(3) O(5) P;MM=154.00311", "Carboxy->Thiocarboxy": "NT=Carboxy->Thiocarboxy;AC=420;CF=O(-1) S;MM=15.977156", "Sulfide": "NT=Sulfide;AC=421;CF=S;MM=31.972071", "PyruvicAcidIminyl": "NT=PyruvicAcidIminyl;AC=422;CF=H(2) C(3) O(2);MM=70.005479", "Delta:Se(1)": "NT=Delta:Se(1);AC=423;CF=Se;MM=79.91652", "MolybdopterinGD": "NT=MolybdopterinGD;AC=424;CF=H(47) C(40) N(20) O(26) P(4) S(4) Mo;MM=1572.985775", "Dioxidation": "NT=Dioxidation;AC=425;CF=O(2);MM=31.989829", "Octanoyl": "NT=Octanoyl;AC=426;CF=H(14) C(8) O;MM=126.104465", "PhosphoHexNAc": "NT=PhosphoHexNAc;AC=428;CF=H O(3) P HexNAc;MM=283.045704", "PhosphoHex": "NT=PhosphoHex;AC=429;CF=H O(3) P Hex;MM=242.019154", "Palmitoleyl": "NT=Palmitoleyl;AC=431;CF=H(28) C(16) O;MM=236.214016", "Cholesterol": "NT=Cholesterol;AC=432;CF=H(44) C(27);MM=368.344302", "Didehydroretinylidene": "NT=Didehydroretinylidene;AC=433;CF=H(24) C(20);MM=264.187801", "CHDH": "NT=CHDH;AC=434;CF=H(26) C(17) O(4);MM=294.183109", "Methylpyrroline": "NT=Methylpyrroline;AC=435;CF=H(7) C(6) N O;MM=109.052764", "Hydroxyheme": "NT=Hydroxyheme;AC=436;CF=H(30) C(34) N(4) O(4) Fe;MM=614.161645", "MicrocinC7": "NT=MicrocinC7;AC=437;CF=H(19) C(13) N(6) O(6) P;MM=386.110369", "Cyano": "NT=Cyano;AC=438;CF=H(-1) C N;MM=24.995249", "Diironsubcluster": "NT=Diironsubcluster;AC=439;CF=H(-1) C(5) N(2) O(5) S(2) Fe(2);MM=342.786916", "Amidino": "NT=Amidino;AC=440;CF=H(2) C N(2);MM=42.021798", "FMN": "NT=FMN;AC=442;CF=H(19) C(17) N(4) O(8) P;MM=438.094051", "FMNC": "NT=FMNC;AC=443;CF=H(21) C(17) N(4) O(9) P;MM=456.104615", "CuSMo": "NT=CuSMo;AC=444;CF=H(24) C(19) N(8) O(15) P(2) S(3) Cu Mo;MM=922.834855", "Hydroxytrimethyl": "NT=Hydroxytrimethyl;AC=445;CF=H(7) C(3) O;MM=59.04969", "Deoxy": "NT=Deoxy;AC=447;CF=O(-1);MM=-15.994915", "Microcin": "NT=Microcin;AC=448;CF=H(37) C(36) N(3) O(20);MM=831.197041", "Decanoyl": "NT=Decanoyl;AC=449;CF=H(18) C(10) O;MM=154.135765", "Glu": "NT=Glu;AC=450;CF=H(7) C(5) N O(3);MM=129.042593", "GluGlu": "NT=GluGlu;AC=451;CF=H(14) C(10) N(2) O(6);MM=258.085186", "GluGluGlu": "NT=GluGluGlu;AC=452;CF=H(21) C(15) N(3) O(9);MM=387.127779", "GluGluGluGlu": "NT=GluGluGluGlu;AC=453;CF=H(28) C(20) N(4) O(12);MM=516.170373", "HexN": "NT=HexN;AC=454;CF=HexN;MM=161.068808", "Xlink:DMP[154]": "NT=Xlink:DMP[154];AC=455;CF=H(14) C(8) N(2) O;MM=154.110613", "Xlink:DMP": "NT=Xlink:DMP;AC=456;CF=H(10) C(7) N(2);MM=122.084398", "NDA": "NT=NDA;AC=457;CF=H(5) C(13) N;MM=175.042199", "SPITC:13C(6)": "NT=SPITC:13C(6);AC=464;CF=H(5) C 13C(6) N O(3) S(2);MM=220.991213", "AEC-MAEC": "NT=AEC-MAEC;AC=472;CF=H(5) C(2) N O(-1) S;MM=59.019355", "TMAB": "NT=TMAB;AC=476;CF=H(14) C(7) N O;MM=128.107539", "TMAB:2H(9)": "NT=TMAB:2H(9);AC=477;CF=H(5) 2H(9) C(7) N O;MM=137.16403", "FTC": "NT=FTC;AC=478;CF=H(15) C(21) N(3) O(5) S;MM=421.073241", "Label:2H(4)": "NT=Label:2H(4);AC=481;CF=H(-4) 2H(4);MM=4.025107", "DHP": "NT=DHP;AC=488;CF=H(8) C(8) N;MM=118.065674", "Hep": "NT=Hep;AC=490;CF=Hep;MM=192.063388", "BADGE": "NT=BADGE;AC=493;CF=H(24) C(21) O(4);MM=340.167459", "CyDye-Cy3": "NT=CyDye-Cy3;AC=494;CF=H(44) C(37) N(4) O(6) S;MM=672.298156", "CyDye-Cy5": "NT=CyDye-Cy5;AC=495;CF=H(44) C(38) N(4) O(6) S;MM=684.298156", "BHTOH": "NT=BHTOH;AC=498;CF=H(22) C(15) O(2);MM=234.16198", "IGBP:13C(2)": "NT=IGBP:13C(2);AC=499;CF=H(13) C(10) 13C(2) N(2) O(2) Br;MM=298.022748", "Nmethylmaleimide+water": "NT=Nmethylmaleimide+water;AC=500;CF=H(7) C(5) N O(3);MM=129.042593", "PyMIC": "NT=PyMIC;AC=501;CF=H(6) C(7) N(2) O;MM=134.048013", "LG-lactam-K": "NT=LG-lactam-K;AC=503;CF=H(28) C(20) O(4);MM=332.19876", "LG-Hlactam-K": "NT=LG-Hlactam-K;AC=504;CF=H(28) C(20) O(5);MM=348.193674", "LG-lactam-R": "NT=LG-lactam-R;AC=505;CF=H(26) C(19) N(-2) O(4);MM=290.176961", "LG-Hlactam-R": "NT=LG-Hlactam-R;AC=506;CF=H(26) C(19) N(-2) O(5);MM=306.171876", "Dimethyl:2H(4)13C(2)": "NT=Dimethyl:2H(4)13C(2);AC=510;CF=2H(4) 13C(2);MM=34.063117", "Hex(2)": "NT=Hex(2);AC=512;CF=Hex(2);MM=324.105647", "C8-QAT": "NT=C8-QAT;AC=513;CF=H(29) C(14) N O;MM=227.224915", "PropylNAGthiazoline": "NT=PropylNAGthiazoline;AC=514;CF=H(14) C(9) N O(4) S;MM=232.064354", "FNEM": "NT=FNEM;AC=515;CF=H(13) C(24) N O(7);MM=427.069202", "Diethyl": "NT=Diethyl;AC=518;CF=H(8) C(4);MM=56.0626", "BisANS": "NT=BisANS;AC=519;CF=H(22) C(32) N(2) O(6) S(2);MM=594.091928", "Piperidine": "NT=Piperidine;AC=520;CF=H(8) C(5);MM=68.0626", "Maleimide-PEO2-Biotin": "NT=Maleimide-PEO2-Biotin;AC=522;CF=H(35) C(23) N(5) O(7) S;MM=525.225719", "Sulfo-NHS-LC-LC-Biotin": "NT=Sulfo-NHS-LC-LC-Biotin;AC=523;CF=H(36) C(22) N(4) O(4) S;MM=452.245726", "CLIP_TRAQ_2": "NT=CLIP_TRAQ_2;AC=525;CF=H(12) C(6) 13C N(2) O;MM=141.098318", "Dethiomethyl": "NT=Dethiomethyl;AC=526;CF=H(-4) C(-1) S(-1);MM=-48.003371", "Methyl+Deamidated": "NT=Methyl+Deamidated;AC=528;CF=H C N(-1) O;MM=14.999666", "Delta:H(5)C(2)": "NT=Delta:H(5)C(2);AC=529;CF=H(5) C(2);MM=29.039125", "Cation:K": "NT=Cation:K;AC=530;CF=H(-1) K;MM=37.955882", "Cation:Cu[I]": "NT=Cation:Cu[I];AC=531;CF=H(-1) Cu;MM=61.921774", "iTRAQ4plex114": "NT=iTRAQ4plex114;AC=532;CF=H(12) C(5) 13C(2) N(2) 18O;MM=144.105918", "iTRAQ4plex115": "NT=iTRAQ4plex115;AC=533;CF=H(12) C(6) 13C N 15N 18O;MM=144.099599", "Dibromo": "NT=Dibromo;AC=534;CF=H(-2) Br(2);MM=155.821022", "LRGG": "NT=LRGG;AC=535;CF=H(29) C(16) N(7) O(4);MM=383.228103", "CLIP_TRAQ_3": "NT=CLIP_TRAQ_3;AC=536;CF=H(20) C(11) 13C N(3) O(4);MM=271.148736", "CLIP_TRAQ_4": "NT=CLIP_TRAQ_4;AC=537;CF=H(15) C(9) 13C N(2) O(5);MM=244.101452", "Biotin:Cayman-10141": "NT=Biotin:Cayman-10141;AC=538;CF=H(54) C(35) N(4) O(4) S;MM=626.386577", "Biotin:Cayman-10013": "NT=Biotin:Cayman-10013;AC=539;CF=H(60) C(36) N(4) O(5) S;MM=660.428442", "Ala->Ser": "NT=Ala->Ser;AC=540;CF=O;MM=15.994915", "Ala->Thr": "NT=Ala->Thr;AC=541;CF=H(2) C O;MM=30.010565", "Ala->Asp": "NT=Ala->Asp;AC=542;CF=C O(2);MM=43.989829", "Ala->Pro": "NT=Ala->Pro;AC=543;CF=H(2) C(2);MM=26.01565", "Ala->Gly": "NT=Ala->Gly;AC=544;CF=H(-2) C(-1);MM=-14.01565", "Ala->Glu": "NT=Ala->Glu;AC=545;CF=H(2) C(2) O(2);MM=58.005479", "Ala->Val": "NT=Ala->Val;AC=546;CF=H(4) C(2);MM=28.0313", "Cys->Phe": "NT=Cys->Phe;AC=547;CF=H(4) C(6) S(-1);MM=44.059229", "Cys->Ser": "NT=Cys->Ser;AC=548;CF=O S(-1);MM=-15.977156", "Cys->Trp": "NT=Cys->Trp;AC=549;CF=H(5) C(8) N S(-1);MM=83.070128", "Cys->Tyr": "NT=Cys->Tyr;AC=550;CF=H(4) C(6) O S(-1);MM=60.054144", "Cys->Arg": "NT=Cys->Arg;AC=551;CF=H(7) C(3) N(3) S(-1);MM=53.091927", "Cys->Gly": "NT=Cys->Gly;AC=552;CF=H(-2) C(-1) S(-1);MM=-45.987721", "Asp->Ala": "NT=Asp->Ala;AC=553;CF=C(-1) O(-2);MM=-43.989829", "Asp->His": "NT=Asp->His;AC=554;CF=H(2) C(2) N(2) O(-2);MM=22.031969", "Asp->Asn": "NT=Asp->Asn;AC=555;CF=H N O(-1);MM=-0.984016", "Asp->Gly": "NT=Asp->Gly;AC=556;CF=H(-2) C(-2) O(-2);MM=-58.005479", "Asp->Tyr": "NT=Asp->Tyr;AC=557;CF=H(4) C(5) O(-1);MM=48.036386", "Asp->Glu": "NT=Asp->Glu;AC=558;CF=H(2) C;MM=14.01565", "Asp->Val": "NT=Asp->Val;AC=559;CF=H(4) C O(-2);MM=-15.958529", "Glu->Ala": "NT=Glu->Ala;AC=560;CF=H(-2) C(-2) O(-2);MM=-58.005479", "Glu->Gln": "NT=Glu->Gln;AC=561;CF=H N O(-1);MM=-0.984016", "Glu->Asp": "NT=Glu->Asp;AC=562;CF=H(-2) C(-1);MM=-14.01565", "Glu->Lys": "NT=Glu->Lys;AC=563;CF=H(5) C N O(-2);MM=-0.94763", "Glu->Gly": "NT=Glu->Gly;AC=564;CF=H(-4) C(-3) O(-2);MM=-72.021129", "Glu->Val": "NT=Glu->Val;AC=565;CF=H(2) O(-2);MM=-29.974179", "Phe->Ser": "NT=Phe->Ser;AC=566;CF=H(-4) C(-6) O;MM=-60.036386", "Phe->Cys": "NT=Phe->Cys;AC=567;CF=H(-4) C(-6) S;MM=-44.059229", "Phe->Xle": "NT=Phe->Xle;AC=568;CF=H(2) C(-3);MM=-33.98435", "Phe->Tyr": "NT=Phe->Tyr;AC=569;CF=O;MM=15.994915", "Phe->Val": "NT=Phe->Val;AC=570;CF=C(-4);MM=-48.0", "Gly->Ala": "NT=Gly->Ala;AC=571;CF=H(2) C;MM=14.01565", "Gly->Ser": "NT=Gly->Ser;AC=572;CF=H(2) C O;MM=30.010565", "Gly->Trp": "NT=Gly->Trp;AC=573;CF=H(7) C(9) N;MM=129.057849", "Gly->Glu": "NT=Gly->Glu;AC=574;CF=H(4) C(3) O(2);MM=72.021129", "Gly->Val": "NT=Gly->Val;AC=575;CF=H(6) C(3);MM=42.04695", "Gly->Asp": "NT=Gly->Asp;AC=576;CF=H(2) C(2) O(2);MM=58.005479", "Gly->Cys": "NT=Gly->Cys;AC=577;CF=H(2) C S;MM=45.987721", "Gly->Arg": "NT=Gly->Arg;AC=578;CF=H(9) C(4) N(3);MM=99.079647", "His->Pro": "NT=His->Pro;AC=580;CF=C(-1) N(-2);MM=-40.006148", "His->Tyr": "NT=His->Tyr;AC=581;CF=H(2) C(3) N(-2) O;MM=26.004417", "His->Gln": "NT=His->Gln;AC=582;CF=H C(-1) N(-1) O;MM=-9.000334", "His->Arg": "NT=His->Arg;AC=584;CF=H(5) N;MM=19.042199", "His->Xle": "NT=His->Xle;AC=585;CF=H(4) N(-2);MM=-23.974848", "Xle->Thr": "NT=Xle->Thr;AC=588;CF=H(-4) C(-2) O;MM=-12.036386", "Xle->Asn": "NT=Xle->Asn;AC=589;CF=H(-5) C(-2) N O;MM=0.958863", "Xle->Lys": "NT=Xle->Lys;AC=590;CF=H N;MM=15.010899", "Lys->Thr": "NT=Lys->Thr;AC=594;CF=H(-5) C(-2) N(-1) O;MM=-27.047285", "Lys->Asn": "NT=Lys->Asn;AC=595;CF=H(-6) C(-2) O;MM=-14.052036", "Lys->Glu": "NT=Lys->Glu;AC=596;CF=H(-5) C(-1) N(-1) O(2);MM=0.94763", "Lys->Gln": "NT=Lys->Gln;AC=597;CF=H(-4) C(-1) O;MM=-0.036386", "Lys->Met": "NT=Lys->Met;AC=598;CF=H(-3) C(-1) N(-1) S;MM=2.945522", "Lys->Arg": "NT=Lys->Arg;AC=599;CF=N(2);MM=28.006148", "Lys->Xle": "NT=Lys->Xle;AC=600;CF=H(-1) N(-1);MM=-15.010899", "Xle->Ser": "NT=Xle->Ser;AC=601;CF=H(-6) C(-3) O;MM=-26.052036", "Xle->Phe": "NT=Xle->Phe;AC=602;CF=H(-2) C(3);MM=33.98435", "Xle->Trp": "NT=Xle->Trp;AC=603;CF=H(-1) C(5) N;MM=72.995249", "Xle->Pro": "NT=Xle->Pro;AC=604;CF=H(-4) C(-1);MM=-16.0313", "Xle->Val": "NT=Xle->Val;AC=605;CF=H(-2) C(-1);MM=-14.01565", "Xle->His": "NT=Xle->His;AC=606;CF=H(-4) N(2);MM=23.974848", "Xle->Gln": "NT=Xle->Gln;AC=607;CF=H(-3) C(-1) N O;MM=14.974514", "Xle->Met": "NT=Xle->Met;AC=608;CF=H(-2) C(-1) S;MM=17.956421", "Xle->Arg": "NT=Xle->Arg;AC=609;CF=H N(3);MM=43.017047", "Met->Thr": "NT=Met->Thr;AC=610;CF=H(-2) C(-1) O S(-1);MM=-29.992806", "Met->Arg": "NT=Met->Arg;AC=611;CF=H(3) C N(3) S(-1);MM=25.060626", "Met->Lys": "NT=Met->Lys;AC=613;CF=H(3) C N S(-1);MM=-2.945522", "Met->Xle": "NT=Met->Xle;AC=614;CF=H(2) C S(-1);MM=-17.956421", "Met->Val": "NT=Met->Val;AC=615;CF=S(-1);MM=-31.972071", "Asn->Ser": "NT=Asn->Ser;AC=616;CF=H(-1) C(-1) N(-1);MM=-27.010899", "Asn->Thr": "NT=Asn->Thr;AC=617;CF=H N(-1);MM=-12.995249", "Asn->Lys": "NT=Asn->Lys;AC=618;CF=H(6) C(2) O(-1);MM=14.052036", "Asn->Tyr": "NT=Asn->Tyr;AC=619;CF=H(3) C(5) N(-1);MM=49.020401", "Asn->His": "NT=Asn->His;AC=620;CF=H C(2) N O(-1);MM=23.015984", "Asn->Asp": "NT=Asn->Asp;AC=621;CF=H(-1) N(-1) O;MM=0.984016", "Asn->Xle": "NT=Asn->Xle;AC=622;CF=H(5) C(2) N(-1) O(-1);MM=-0.958863", "Pro->Ser": "NT=Pro->Ser;AC=623;CF=H(-2) C(-2) O;MM=-10.020735", "Pro->Ala": "NT=Pro->Ala;AC=624;CF=H(-2) C(-2);MM=-26.01565", "Pro->His": "NT=Pro->His;AC=625;CF=C N(2);MM=40.006148", "Pro->Gln": "NT=Pro->Gln;AC=626;CF=H N O;MM=31.005814", "Pro->Thr": "NT=Pro->Thr;AC=627;CF=C(-1) O;MM=3.994915", "Pro->Arg": "NT=Pro->Arg;AC=628;CF=H(5) C N(3);MM=59.048347", "Pro->Xle": "NT=Pro->Xle;AC=629;CF=H(4) C;MM=16.0313", "Gln->Pro": "NT=Gln->Pro;AC=630;CF=H(-1) N(-1) O(-1);MM=-31.005814", "Gln->Lys": "NT=Gln->Lys;AC=631;CF=H(4) C O(-1);MM=0.036386", "Gln->Glu": "NT=Gln->Glu;AC=632;CF=H(-1) N(-1) O;MM=0.984016", "Gln->His": "NT=Gln->His;AC=633;CF=H(-1) C N O(-1);MM=9.000334", "Gln->Arg": "NT=Gln->Arg;AC=634;CF=H(4) C N(2) O(-1);MM=28.042534", "Gln->Xle": "NT=Gln->Xle;AC=635;CF=H(3) C N(-1) O(-1);MM=-14.974514", "Arg->Ser": "NT=Arg->Ser;AC=636;CF=H(-7) C(-3) N(-3) O;MM=-69.069083", "Arg->Trp": "NT=Arg->Trp;AC=637;CF=H(-2) C(5) N(-2);MM=29.978202", "Arg->Thr": "NT=Arg->Thr;AC=638;CF=H(-5) C(-2) N(-3) O;MM=-55.053433", "Arg->Pro": "NT=Arg->Pro;AC=639;CF=H(-5) C(-1) N(-3);MM=-59.048347", "Arg->Lys": "NT=Arg->Lys;AC=640;CF=N(-2);MM=-28.006148", "Arg->His": "NT=Arg->His;AC=641;CF=H(-5) N(-1);MM=-19.042199", "Arg->Gln": "NT=Arg->Gln;AC=642;CF=H(-4) C(-1) N(-2) O;MM=-28.042534", "Arg->Met": "NT=Arg->Met;AC=643;CF=H(-3) C(-1) N(-3) S;MM=-25.060626", "Arg->Cys": "NT=Arg->Cys;AC=644;CF=H(-7) C(-3) N(-3) S;MM=-53.091927", "Arg->Xle": "NT=Arg->Xle;AC=645;CF=H(-1) N(-3);MM=-43.017047", "Arg->Gly": "NT=Arg->Gly;AC=646;CF=H(-9) C(-4) N(-3);MM=-99.079647", "Ser->Phe": "NT=Ser->Phe;AC=647;CF=H(4) C(6) O(-1);MM=60.036386", "Ser->Ala": "NT=Ser->Ala;AC=648;CF=O(-1);MM=-15.994915", "Ser->Trp": "NT=Ser->Trp;AC=649;CF=H(5) C(8) N O(-1);MM=99.047285", "Ser->Thr": "NT=Ser->Thr;AC=650;CF=H(2) C;MM=14.01565", "Ser->Asn": "NT=Ser->Asn;AC=651;CF=H C N;MM=27.010899", "Ser->Pro": "NT=Ser->Pro;AC=652;CF=H(2) C(2) O(-1);MM=10.020735", "Ser->Tyr": "NT=Ser->Tyr;AC=653;CF=H(4) C(6);MM=76.0313", "Ser->Cys": "NT=Ser->Cys;AC=654;CF=O(-1) S;MM=15.977156", "Ser->Arg": "NT=Ser->Arg;AC=655;CF=H(7) C(3) N(3) O(-1);MM=69.069083", "Ser->Xle": "NT=Ser->Xle;AC=656;CF=H(6) C(3) O(-1);MM=26.052036", "Ser->Gly": "NT=Ser->Gly;AC=657;CF=H(-2) C(-1) O(-1);MM=-30.010565", "Thr->Ser": "NT=Thr->Ser;AC=658;CF=H(-2) C(-1);MM=-14.01565", "Thr->Ala": "NT=Thr->Ala;AC=659;CF=H(-2) C(-1) O(-1);MM=-30.010565", "Thr->Asn": "NT=Thr->Asn;AC=660;CF=H(-1) N;MM=12.995249", "Thr->Lys": "NT=Thr->Lys;AC=661;CF=H(5) C(2) N O(-1);MM=27.047285", "Thr->Pro": "NT=Thr->Pro;AC=662;CF=C O(-1);MM=-3.994915", "Thr->Met": "NT=Thr->Met;AC=663;CF=H(2) C O(-1) S;MM=29.992806", "Thr->Xle": "NT=Thr->Xle;AC=664;CF=H(4) C(2) O(-1);MM=12.036386", "Thr->Arg": "NT=Thr->Arg;AC=665;CF=H(5) C(2) N(3) O(-1);MM=55.053433", "Val->Phe": "NT=Val->Phe;AC=666;CF=C(4);MM=48.0", "Val->Ala": "NT=Val->Ala;AC=667;CF=H(-4) C(-2);MM=-28.0313", "Val->Glu": "NT=Val->Glu;AC=668;CF=H(-2) O(2);MM=29.974179", "Val->Met": "NT=Val->Met;AC=669;CF=S;MM=31.972071", "Val->Asp": "NT=Val->Asp;AC=670;CF=H(-4) C(-1) O(2);MM=15.958529", "Val->Xle": "NT=Val->Xle;AC=671;CF=H(2) C;MM=14.01565", "Val->Gly": "NT=Val->Gly;AC=672;CF=H(-6) C(-3);MM=-42.04695", "Trp->Ser": "NT=Trp->Ser;AC=673;CF=H(-5) C(-8) N(-1) O;MM=-99.047285", "Trp->Cys": "NT=Trp->Cys;AC=674;CF=H(-5) C(-8) N(-1) S;MM=-83.070128", "Trp->Arg": "NT=Trp->Arg;AC=675;CF=H(2) C(-5) N(2);MM=-29.978202", "Trp->Gly": "NT=Trp->Gly;AC=676;CF=H(-7) C(-9) N(-1);MM=-129.057849", "Trp->Xle": "NT=Trp->Xle;AC=677;CF=H C(-5) N(-1);MM=-72.995249", "Tyr->Phe": "NT=Tyr->Phe;AC=678;CF=O(-1);MM=-15.994915", "Tyr->Ser": "NT=Tyr->Ser;AC=679;CF=H(-4) C(-6);MM=-76.0313", "Tyr->Asn": "NT=Tyr->Asn;AC=680;CF=H(-3) C(-5) N;MM=-49.020401", "Tyr->His": "NT=Tyr->His;AC=681;CF=H(-2) C(-3) N(2) O(-1);MM=-26.004417", "Tyr->Asp": "NT=Tyr->Asp;AC=682;CF=H(-4) C(-5) O;MM=-48.036386", "Tyr->Cys": "NT=Tyr->Cys;AC=683;CF=H(-4) C(-6) O(-1) S;MM=-60.054144", "BDMAPP": "NT=BDMAPP;AC=684;CF=H(12) C(11) N O Br;MM=253.010225", "NA-LNO2": "NT=NA-LNO2;AC=685;CF=H(31) C(18) N O(4);MM=325.225309", "NA-OA-NO2": "NT=NA-OA-NO2;AC=686;CF=H(33) C(18) N O(4);MM=327.240959", "ICPL:2H(4)": "NT=ICPL:2H(4);AC=687;CF=H(-1) 2H(4) C(6) N O;MM=109.046571", "Label:13C(6)15N(1)": "NT=Label:13C(6)15N(1);AC=695;CF=C(-6) 13C(6) N(-1) 15N;MM=7.017164", "Label:2H(9)13C(6)15N(2)": "NT=Label:2H(9)13C(6)15N(2);AC=696;CF=H(-9) 2H(9) C(-6) 13C(6) N(-2) 15N(2);MM=17.07069", "NIC": "NT=NIC;AC=697;CF=H(3) C(6) N O;MM=105.021464", "dNIC": "NT=dNIC;AC=698;CF=H 2H(3) C(6) N O;MM=109.048119", "HNE-Delta:H(2)O": "NT=HNE-Delta:H(2)O;AC=720;CF=H(14) C(9) O;MM=138.104465", "4-ONE": "NT=4-ONE;AC=721;CF=H(14) C(9) O(2);MM=154.09938", "O-Dimethylphosphate": "NT=O-Dimethylphosphate;AC=723;CF=H(5) C(2) O(3) P;MM=107.997631", "O-Methylphosphate": "NT=O-Methylphosphate;AC=724;CF=H(3) C O(3) P;MM=93.981981", "Diethylphosphate": "NT=Diethylphosphate;AC=725;CF=H(9) C(4) O(3) P;MM=136.028931", "Ethylphosphate": "NT=Ethylphosphate;AC=726;CF=H(5) C(2) O(3) P;MM=107.997631", "O-pinacolylmethylphosphonate": "NT=O-pinacolylmethylphosphonate;AC=727;CF=H(15) C(7) O(2) P;MM=162.080967", "Methylphosphonate": "NT=Methylphosphonate;AC=728;CF=H(3) C O(2) P;MM=77.987066", "O-Isopropylmethylphosphonate": "NT=O-Isopropylmethylphosphonate;AC=729;CF=H(9) C(4) O(2) P;MM=120.034017", "iTRAQ8plex": "NT=iTRAQ8plex;AC=730;CF=H(24) C(7) 13C(7) N(3) 15N O(3);MM=304.20536", "iTRAQ8plex:13C(6)15N(2)": "NT=iTRAQ8plex:13C(6)15N(2);AC=731;CF=H(24) C(8) 13C(6) N(2) 15N(2) O(3);MM=304.19904", "Ethanolamine": "NT=Ethanolamine;AC=734;CF=H(5) C(2) N;MM=43.042199", "BEMAD_ST": "NT=BEMAD_ST;AC=735;CF=H(8) C(4) O S(2);MM=136.001656", "BEMAD_C": "NT=BEMAD_C;AC=736;CF=H(8) C(4) O(2) S;MM=120.0245", "TMT6plex": "NT=TMT6plex;AC=737;CF=H(20) C(8) 13C(4) N 15N O(2);MM=229.162932", "TMT2plex": "NT=TMT2plex;AC=738;CF=H(20) C(11) 13C N(2) O(2);MM=225.155833", "TMT": "NT=TMT;AC=739;CF=H(20) C(12) N(2) O(2);MM=224.152478", "ExacTagThiol": "NT=ExacTagThiol;AC=740;CF=H(50) C(23) 13C(12) N(8) 15N(6) O(18);MM=972.365219", "ExacTagAmine": "NT=ExacTagAmine;AC=741;CF=H(52) C(25) 13C(12) N(8) 15N(6) O(19) S;MM=1046.347854", "4-ONE+Delta:H(-2)O(-1)": "NT=4-ONE+Delta:H(-2)O(-1);AC=743;CF=H(12) C(9) O;MM=136.088815", "NO_SMX_SEMD": "NT=NO_SMX_SEMD;AC=744;CF=H(9) C(10) N(3) O(3) S;MM=251.036462", "NO_SMX_SIMD": "NT=NO_SMX_SIMD;AC=746;CF=H(9) C(10) N(3) O(4) S;MM=267.031377", "Malonyl": "NT=Malonyl;AC=747;CF=H(2) C(3) O(3);MM=86.000394", "3sulfo": "NT=3sulfo;AC=748;CF=H(4) C(7) O(4) S;MM=183.983029", "trifluoro": "NT=trifluoro;AC=750;CF=H(-3) F(3);MM=53.971735", "TNBS": "NT=TNBS;AC=751;CF=H C(6) N(3) O(6);MM=210.986535", "IDEnT": "NT=IDEnT;AC=762;CF=H(7) C(9) N O Cl(2);MM=214.990469", "BEMAD_ST:2H(6)": "NT=BEMAD_ST:2H(6);AC=763;CF=H(2) 2H(6) C(4) O S(2);MM=142.039317", "BEMAD_C:2H(6)": "NT=BEMAD_C:2H(6);AC=764;CF=H(2) 2H(6) C(4) O(2) S;MM=126.062161", "Met-loss": "NT=Met-loss;AC=765;CF=H(-9) C(-5) N(-1) O(-1) S(-1);MM=-131.040485", "Met-loss+Acetyl": "NT=Met-loss+Acetyl;AC=766;CF=H(-7) C(-3) N(-1) S(-1);MM=-89.02992", "Menadione-HQ": "NT=Menadione-HQ;AC=767;CF=H(8) C(11) O(2);MM=172.05243", "Methyl+Acetyl:2H(3)": "NT=Methyl+Acetyl:2H(3);AC=768;CF=H 2H(3) C(3) O;MM=59.045045", "lapachenole": "NT=lapachenole;AC=771;CF=H(16) C(16) O(2);MM=240.11503", "Label:13C(5)": "NT=Label:13C(5);AC=772;CF=C(-5) 13C(5);MM=5.016774", "maleimide": "NT=maleimide;AC=773;CF=H(3) C(4) N O(2);MM=97.016378", "Biotin-phenacyl": "NT=Biotin-phenacyl;AC=774;CF=H(38) C(29) N(8) O(6) S;MM=626.263502", "Carboxymethyl:13C(2)": "NT=Carboxymethyl:13C(2);AC=775;CF=H(2) 13C(2) O(2);MM=60.012189", "NEM:2H(5)": "NT=NEM:2H(5);AC=776;CF=H(2) 2H(5) C(6) N O(2);MM=130.079062", "AEC-MAEC:2H(4)": "NT=AEC-MAEC:2H(4);AC=792;CF=H 2H(4) C(2) N O(-1) S;MM=63.044462", "Hex(1)HexNAc(1)": "NT=Hex(1)HexNAc(1);AC=793;CF=Hex HexNAc;MM=365.132196", "Label:13C(6)+GG": "NT=Label:13C(6)+GG;AC=799;CF=H(6) C(-2) 13C(6) N(2) O(2);MM=120.063056", "Biotin:Thermo-21345": "NT=Biotin:Thermo-21345;AC=800;CF=H(25) C(15) N(3) O(2) S;MM=311.166748", "Pentylamine": "NT=Pentylamine;AC=801;CF=H(10) C(5);MM=70.07825", "Biotin:Thermo-21360": "NT=Biotin:Thermo-21360;AC=811;CF=H(37) C(21) N(5) O(6) S;MM=487.246455", "Cy3b-maleimide": "NT=Cy3b-maleimide;AC=821;CF=H(38) C(37) N(4) O(7) S;MM=682.24612", "Gly-loss+Amide": "NT=Gly-loss+Amide;AC=822;CF=H(-2) C(-2) O(-2);MM=-58.005479", "Xlink:BMOE": "NT=Xlink:BMOE;AC=824;CF=H(8) C(10) N(2) O(4);MM=220.048407", "Xlink:DFDNB": "NT=Xlink:DFDNB;AC=825;CF=C(6) N(2) O(4);MM=163.985807", "TMPP-Ac": "NT=TMPP-Ac;AC=827;CF=H(33) C(29) O(10) P;MM=572.181134", "Dihydroxyimidazolidine": "NT=Dihydroxyimidazolidine;AC=830;CF=H(4) C(3) O(2);MM=72.021129", "Label:2H(4)+Acetyl": "NT=Label:2H(4)+Acetyl;AC=834;CF=H(-2) 2H(4) C(2) O;MM=46.035672", "Label:13C(6)+Acetyl": "NT=Label:13C(6)+Acetyl;AC=835;CF=H(2) C(-4) 13C(6) O;MM=48.030694", "Label:13C(6)15N(2)+Acetyl": "NT=Label:13C(6)15N(2)+Acetyl;AC=836;CF=H(2) C(-4) 13C(6) N(-2) 15N(2) O;MM=50.024764", "Arg->Npo": "NT=Arg->Npo;AC=837;CF=H(-1) C(3) N O(2);MM=80.985078", "EQIGG": "NT=EQIGG;AC=846;CF=H(32) C(20) N(6) O(8);MM=484.228162", "Arg2PG": "NT=Arg2PG;AC=848;CF=H(10) C(16) O(4);MM=266.057909", "cGMP": "NT=cGMP;AC=849;CF=H(10) C(10) N(5) O(7) P;MM=343.031785", "cGMP+RMP-loss": "NT=cGMP+RMP-loss;AC=851;CF=H(4) C(5) N(5) O;MM=150.041585", "Label:2H(4)+GG": "NT=Label:2H(4)+GG;AC=853;CF=H(2) 2H(4) C(4) N(2) O(2);MM=118.068034", "MG-H1": "NT=MG-H1;AC=859;CF=H(2) C(3) O;MM=54.010565", "G-H1": "NT=G-H1;AC=860;CF=C(2) O;MM=39.994915", "ZGB": "NT=ZGB;AC=861;CF=H(53) B C(37) N(6) O(6) F(2) S;MM=758.380841", "Label:13C(1)2H(3)": "NT=Label:13C(1)2H(3);AC=862;CF=H(-3) 2H(3) C(-1) 13C;MM=4.022185", "Label:13C(6)15N(2)+GG": "NT=Label:13C(6)15N(2)+GG;AC=864;CF=H(6) C(-2) 13C(6) 15N(2) O(2);MM=122.057126", "ICPL:13C(6)2H(4)": "NT=ICPL:13C(6)2H(4);AC=866;CF=H(-1) 2H(4) 13C(6) N O;MM=115.0667", "QEQTGG": "NT=QEQTGG;AC=876;CF=H(36) C(23) N(8) O(11);MM=600.250354", "QQQTGG": "NT=QQQTGG;AC=877;CF=H(37) C(23) N(9) O(10);MM=599.266339", "Biotin:Thermo-21325": "NT=Biotin:Thermo-21325;AC=884;CF=H(45) C(34) N(7) O(7) S;MM=695.310118", "Label:13C(1)2H(3)+Oxidation": "NT=Label:13C(1)2H(3)+Oxidation;AC=885;CF=H(-3) 2H(3) C(-1) 13C O;MM=20.0171", "HydroxymethylOP": "NT=HydroxymethylOP;AC=886;CF=H(4) C(6) O(2);MM=108.021129", "MDCC": "NT=MDCC;AC=887;CF=H(21) C(20) N(3) O(5);MM=383.148121", "mTRAQ": "NT=mTRAQ;AC=888;CF=H(12) C(7) N(2) O;MM=140.094963", "mTRAQ:13C(3)15N(1)": "NT=mTRAQ:13C(3)15N(1);AC=889;CF=H(12) C(4) 13C(3) N 15N O;MM=144.102063", "DyLight-maleimide": "NT=DyLight-maleimide;AC=890;CF=H(48) C(39) N(4) O(15) S(4);MM=940.1999", "Methyl-PEO12-Maleimide": "NT=Methyl-PEO12-Maleimide;AC=891;CF=H(58) C(32) N(2) O(15);MM=710.383719", "CarbamidomethylDTT": "NT=CarbamidomethylDTT;AC=893;CF=H(11) C(6) N O(3) S(2);MM=209.018035", "CarboxymethylDTT": "NT=CarboxymethylDTT;AC=894;CF=H(10) C(6) O(4) S(2);MM=210.00205", "Biotin-PEG-PRA": "NT=Biotin-PEG-PRA;AC=895;CF=H(42) C(26) N(8) O(7);MM=578.317646", "Met->Aha": "NT=Met->Aha;AC=896;CF=H(-3) C(-1) N(3) S(-1);MM=-4.986324", "Label:15N(4)": "NT=Label:15N(4);AC=897;CF=N(-4) 15N(4);MM=3.98814", "pyrophospho": "NT=pyrophospho;AC=898;CF=H(2) O(6) P(2);MM=159.932662", "Met->Hpg": "NT=Met->Hpg;AC=899;CF=H(-2) C S(-1);MM=-21.987721", "4AcAllylGal": "NT=4AcAllylGal;AC=901;CF=H(24) C(17) O(9);MM=372.142033", "DimethylArsino": "NT=DimethylArsino;AC=902;CF=H(5) C(2) As;MM=103.960719", "Lys->CamCys": "NT=Lys->CamCys;AC=903;CF=H(-4) C(-1) O S;MM=31.935685", "Phe->CamCys": "NT=Phe->CamCys;AC=904;CF=H(-1) C(-4) N O S;MM=12.962234", "Leu->MetOx": "NT=Leu->MetOx;AC=905;CF=H(-2) C(-1) O S;MM=33.951335", "Lys->MetOx": "NT=Lys->MetOx;AC=906;CF=H(-3) C(-1) N(-1) O S;MM=18.940436", "Galactosyl": "NT=Galactosyl;AC=907;CF=O Hex;MM=178.047738", "Xlink:SMCC[321]": "NT=Xlink:SMCC[321];AC=908;CF=H(27) C(17) N(3) O(3);MM=321.205242", "Bacillosamine": "NT=Bacillosamine;AC=910;CF=H(6) C(4) N(2) dHex;MM=228.111007", "MTSL": "NT=MTSL;AC=911;CF=H(14) C(9) N O S;MM=184.07961", "HNE-BAHAH": "NT=HNE-BAHAH;AC=912;CF=H(45) C(25) N(5) O(4) S;MM=511.319226", "Methylmalonylation": "NT=Methylmalonylation;AC=914;CF=H(4) C(4) O(3);MM=100.016044", "Label:13C(4)15N(2)+GG": "NT=Label:13C(4)15N(2)+GG;AC=923;CF=H(6) 13C(4) 15N(2) O(2);MM=120.050417", "ethylamino": "NT=ethylamino;AC=926;CF=H(5) C(2) N O(-1);MM=27.047285", "MercaptoEthanol": "NT=MercaptoEthanol;AC=928;CF=H(4) C(2) S;MM=60.003371", "Ethyl+Deamidated": "NT=Ethyl+Deamidated;AC=931;CF=H(3) C(2) N(-1) O;MM=29.015316", "VFQQQTGG": "NT=VFQQQTGG;AC=932;CF=H(55) C(37) N(11) O(12);MM=845.403166", "VIEVYQEQTGG": "NT=VIEVYQEQTGG;AC=933;CF=H(81) C(53) N(13) O(19);MM=1203.577168", "AMTzHexNAc2": "NT=AMTzHexNAc2;AC=934;CF=H(30) C(19) N(6) O(10);MM=502.202341", "Atto495Maleimide": "NT=Atto495Maleimide;AC=935;CF=H(32) C(27) N(5) O(3);MM=474.250515", "Chlorination": "NT=Chlorination;AC=936;CF=H(-1) Cl;MM=33.961028", "dichlorination": "NT=dichlorination;AC=937;CF=H(-2) Cl(2);MM=67.922055", "AROD": "NT=AROD;AC=938;CF=H(52) C(35) N(10) O(9) S(2);MM=820.336015", "Cys->methylaminoAla": "NT=Cys->methylaminoAla;AC=939;CF=H(3) C N S(-1);MM=-2.945522", "Cys->ethylaminoAla": "NT=Cys->ethylaminoAla;AC=940;CF=H(5) C(2) N S(-1);MM=11.070128", "DNPS": "NT=DNPS;AC=941;CF=H(3) C(6) N(2) O(4) S;MM=198.981352", "SulfoGMBS": "NT=SulfoGMBS;AC=942;CF=H(26) C(22) N(4) O(5) S;MM=458.162391", "DimethylamineGMBS": "NT=DimethylamineGMBS;AC=943;CF=H(21) C(13) N(3) O(3);MM=267.158292", "Label:15N(2)2H(9)": "NT=Label:15N(2)2H(9);AC=944;CF=H(-9) 2H(9) N(-2) 15N(2);MM=11.050561", "LG-anhydrolactam": "NT=LG-anhydrolactam;AC=946;CF=H(26) C(20) O(3);MM=314.188195", "LG-pyrrole": "NT=LG-pyrrole;AC=947;CF=H(28) C(20) O(3);MM=316.203845", "LG-anhyropyrrole": "NT=LG-anhyropyrrole;AC=948;CF=H(26) C(20) O(2);MM=298.19328", "3-deoxyglucosone": "NT=3-deoxyglucosone;AC=949;CF=H(8) C(6) O(4);MM=144.042259", "Cation:Li": "NT=Cation:Li;AC=950;CF=H(-1) Li;MM=6.008178", "Cation:Ca[II]": "NT=Cation:Ca[II];AC=951;CF=H(-2) Ca;MM=37.946941", "Cation:Fe[II]": "NT=Cation:Fe[II];AC=952;CF=H(-2) Fe;MM=53.919289", "Cation:Ni[II]": "NT=Cation:Ni[II];AC=953;CF=H(-2) Ni;MM=55.919696", "Cation:Zn[II]": "NT=Cation:Zn[II];AC=954;CF=H(-2) Zn;MM=61.913495", "Cation:Ag": "NT=Cation:Ag;AC=955;CF=H(-1) Ag;MM=105.897267", "Cation:Mg[II]": "NT=Cation:Mg[II];AC=956;CF=H(-2) Mg;MM=21.969392", "2-succinyl": "NT=2-succinyl;AC=957;CF=H(4) C(4) O(4);MM=116.010959", "Propargylamine": "NT=Propargylamine;AC=958;CF=H(3) C(3) N O(-1);MM=37.031634", "Phosphopropargyl": "NT=Phosphopropargyl;AC=959;CF=H(4) C(3) N O(2) P;MM=116.997965", "SUMO2135": "NT=SUMO2135;AC=960;CF=H(137) C(90) N(21) O(37) S;MM=2135.920496", "SUMO3549": "NT=SUMO3549;AC=961;CF=H(224) C(150) N(38) O(60) S;MM=3549.536568", "thioacylPA": "NT=thioacylPA;AC=967;CF=H(9) C(6) N O(2) S;MM=159.035399", "maleimide3": "NT=maleimide3;AC=971;CF=H(59) C(37) N(7) O(23);MM=969.366232", "maleimide5": "NT=maleimide5;AC=972;CF=H(79) C(49) N(7) O(33);MM=1293.471879", "Puromycin": "NT=Puromycin;AC=973;CF=H(27) C(22) N(7) O(4);MM=453.212452", "Carbofuran": "NT=Carbofuran;AC=977;CF=H(3) C(2) N O;MM=57.021464", "BITC": "NT=BITC;AC=978;CF=H(7) C(8) N S;MM=149.02992", "PEITC": "NT=PEITC;AC=979;CF=H(9) C(9) N S;MM=163.04557", "glucosone": "NT=glucosone;AC=981;CF=H(8) C(6) O(5);MM=160.037173", "cysTMT": "NT=cysTMT;AC=984;CF=H(25) C(14) N(3) O(2) S;MM=299.166748", "cysTMT6plex": "NT=cysTMT6plex;AC=985;CF=H(25) C(10) 13C(4) N(2) 15N O(2) S;MM=304.177202", "Label:13C(6)+Dimethyl": "NT=Label:13C(6)+Dimethyl;AC=986;CF=H(4) C(-4) 13C(6);MM=34.051429", "Label:13C(6)15N(2)+Dimethyl": "NT=Label:13C(6)15N(2)+Dimethyl;AC=987;CF=H(4) C(-4) 13C(6) N(-2) 15N(2);MM=36.045499", "Ammonium": "NT=Ammonium;AC=989;CF=H(3) N;MM=17.026549", "ISD_z+2_ion": "NT=ISD_z+2_ion;AC=991;CF=H(-1) N(-1);MM=-15.010899", "Biotin:Sigma-B1267": "NT=Biotin:Sigma-B1267;AC=993;CF=H(27) C(20) N(5) O(5) S;MM=449.17329", "Label:15N(1)": "NT=Label:15N(1);AC=994;CF=N(-1) 15N;MM=0.997035", "Label:15N(2)": "NT=Label:15N(2);AC=995;CF=N(-2) 15N(2);MM=1.99407", "Label:15N(3)": "NT=Label:15N(3);AC=996;CF=N(-3) 15N(3);MM=2.991105", "sulfo+amino": "NT=sulfo+amino;AC=997;CF=H N O(3) S;MM=94.967714", "AHA-Alkyne": "NT=AHA-Alkyne;AC=1000;CF=H(5) C(4) N(5) O S(-1);MM=107.077339", "AHA-Alkyne-KDDDD": "NT=AHA-Alkyne-KDDDD;AC=1001;CF=H(37) C(26) N(11) O(14) S(-1);MM=695.280074", "EGCG1": "NT=EGCG1;AC=1002;CF=H(16) C(22) O(11);MM=456.069261", "EGCG2": "NT=EGCG2;AC=1003;CF=H(11) C(15) O(6);MM=287.055563", "Label:13C(6)15N(4)+Methyl": "NT=Label:13C(6)15N(4)+Methyl;AC=1004;CF=H(2) C(-5) 13C(6) N(-4) 15N(4);MM=24.023919", "Label:13C(6)15N(4)+Dimethyl": "NT=Label:13C(6)15N(4)+Dimethyl;AC=1005;CF=H(4) C(-4) 13C(6) N(-4) 15N(4);MM=38.039569", "Label:13C(6)15N(4)+Methyl:2H(3)13C(1)": "NT=Label:13C(6)15N(4)+Methyl:2H(3)13C(1);AC=1006;CF=H(-1) 2H(3) C(-6) 13C(7) N(-4) 15N(4);MM=28.046104", "Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2)": "NT=Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2);AC=1007;CF=H(-2) 2H(6) C(-6) 13C(8) N(-4) 15N(4);MM=46.083939", "Cys->CamSec": "NT=Cys->CamSec;AC=1008;CF=H(3) C(2) N O S(-1) Se;MM=104.965913", "Thiazolidine": "NT=Thiazolidine;AC=1009;CF=C;MM=12.0", "DEDGFLYMVYASQETFG": "NT=DEDGFLYMVYASQETFG;AC=1010;CF=H(122) C(89) N(18) O(31) S;MM=1970.824411", "Biotin:Invitrogen-M1602": "NT=Biotin:Invitrogen-M1602;AC=1012;CF=H(33) C(23) N(5) O(7) S;MM=523.210069", "glycidamide": "NT=glycidamide;AC=1014;CF=H(5) C(3) N O(2);MM=87.032028", "Ahx2+Hsl": "NT=Ahx2+Hsl;AC=1015;CF=H(27) C(16) N(3) O(3);MM=309.205242", "DMPO": "NT=DMPO;AC=1017;CF=H(9) C(6) N O;MM=111.068414", "ICDID": "NT=ICDID;AC=1018;CF=H(10) C(8) O(2);MM=138.06808", "ICDID:2H(6)": "NT=ICDID:2H(6);AC=1019;CF=H(4) 2H(6) C(8) O(2);MM=144.10574", "Xlink:DSS[156]": "NT=Xlink:DSS[156];AC=1020;CF=H(12) C(8) O(3);MM=156.078644", "Xlink:EGS[244]": "NT=Xlink:EGS[244];AC=1021;CF=H(12) C(10) O(7);MM=244.058303", "Xlink:DST[132]": "NT=Xlink:DST[132];AC=1022;CF=H(4) C(4) O(5);MM=132.005873", "Xlink:DTSSP[192]": "NT=Xlink:DTSSP[192];AC=1023;CF=H(8) C(6) O(3) S(2);MM=191.991486", "Xlink:SMCC[237]": "NT=Xlink:SMCC[237];AC=1024;CF=H(15) C(12) N O(4);MM=237.100108", "Xlink:DMP[140]": "NT=Xlink:DMP[140];AC=1027;CF=H(12) C(7) N(2) O;MM=140.094963", "Xlink:EGS[115]": "NT=Xlink:EGS[115];AC=1028;CF=H(5) C(4) N O(3);MM=115.026943", "Biotin:Thermo-88310": "NT=Biotin:Thermo-88310;AC=1031;CF=H(16) C(10) N(2) O(2);MM=196.121178", "2-nitrobenzyl": "NT=2-nitrobenzyl;AC=1032;CF=H(5) C(7) N O(2);MM=135.032028", "Cys->SecNEM": "NT=Cys->SecNEM;AC=1033;CF=H(7) C(6) N O(2) S(-1) Se;MM=172.992127", "Cys->SecNEM:2H(5)": "NT=Cys->SecNEM:2H(5);AC=1034;CF=H(2) 2H(5) C(6) N O(2) S(-1) Se;MM=178.023511", "Thiadiazole": "NT=Thiadiazole;AC=1035;CF=H(6) C(9) N(2) S;MM=174.025169", "Withaferin": "NT=Withaferin;AC=1036;CF=H(38) C(28) O(6);MM=470.266839", "Biotin:Thermo-88317": "NT=Biotin:Thermo-88317;AC=1037;CF=H(42) C(22) N(3) O(4) P;MM=443.291294", "TAMRA-FP": "NT=TAMRA-FP;AC=1038;CF=H(46) C(37) N(3) O(6) P;MM=659.312423", "Biotin:Thermo-21901+H2O": "NT=Biotin:Thermo-21901+H2O;AC=1039;CF=H(37) C(23) N(5) O(8) S;MM=543.236284", "Deoxyhypusine": "NT=Deoxyhypusine;AC=1041;CF=H(9) C(4) N;MM=71.073499", "Acetyldeoxyhypusine": "NT=Acetyldeoxyhypusine;AC=1042;CF=H(11) C(6) N O;MM=113.084064", "Acetylhypusine": "NT=Acetylhypusine;AC=1043;CF=H(11) C(6) N O(2);MM=129.078979", "Ala->Cys": "NT=Ala->Cys;AC=1044;CF=S;MM=31.972071", "Ala->Phe": "NT=Ala->Phe;AC=1045;CF=H(4) C(6);MM=76.0313", "Ala->His": "NT=Ala->His;AC=1046;CF=H(2) C(3) N(2);MM=66.021798", "Ala->Xle": "NT=Ala->Xle;AC=1047;CF=H(6) C(3);MM=42.04695", "Ala->Lys": "NT=Ala->Lys;AC=1048;CF=H(7) C(3) N;MM=57.057849", "Ala->Met": "NT=Ala->Met;AC=1049;CF=H(4) C(2) S;MM=60.003371", "Ala->Asn": "NT=Ala->Asn;AC=1050;CF=H C N O;MM=43.005814", "Ala->Gln": "NT=Ala->Gln;AC=1051;CF=H(3) C(2) N O;MM=57.021464", "Ala->Arg": "NT=Ala->Arg;AC=1052;CF=H(7) C(3) N(3);MM=85.063997", "Ala->Trp": "NT=Ala->Trp;AC=1053;CF=H(5) C(8) N;MM=115.042199", "Ala->Tyr": "NT=Ala->Tyr;AC=1054;CF=H(4) C(6) O;MM=92.026215", "Cys->Ala": "NT=Cys->Ala;AC=1055;CF=S(-1);MM=-31.972071", "Cys->Asp": "NT=Cys->Asp;AC=1056;CF=C O(2) S(-1);MM=12.017759", "Cys->Glu": "NT=Cys->Glu;AC=1057;CF=H(2) C(2) O(2) S(-1);MM=26.033409", "Cys->His": "NT=Cys->His;AC=1058;CF=H(2) C(3) N(2) S(-1);MM=34.049727", "Cys->Xle": "NT=Cys->Xle;AC=1059;CF=H(6) C(3) S(-1);MM=10.07488", "Cys->Lys": "NT=Cys->Lys;AC=1060;CF=H(7) C(3) N S(-1);MM=25.085779", "Cys->Met": "NT=Cys->Met;AC=1061;CF=H(4) C(2);MM=28.0313", "Cys->Asn": "NT=Cys->Asn;AC=1062;CF=H C N O S(-1);MM=11.033743", "Cys->Pro": "NT=Cys->Pro;AC=1063;CF=H(2) C(2) S(-1);MM=-5.956421", "Cys->Gln": "NT=Cys->Gln;AC=1064;CF=H(3) C(2) N O S(-1);MM=25.049393", "Cys->Thr": "NT=Cys->Thr;AC=1065;CF=H(2) C O S(-1);MM=-1.961506", "Cys->Val": "NT=Cys->Val;AC=1066;CF=H(4) C(2) S(-1);MM=-3.940771", "Asp->Cys": "NT=Asp->Cys;AC=1067;CF=C(-1) O(-2) S;MM=-12.017759", "Asp->Phe": "NT=Asp->Phe;AC=1068;CF=H(4) C(5) O(-2);MM=32.041471", "Asp->Xle": "NT=Asp->Xle;AC=1069;CF=H(6) C(2) O(-2);MM=-1.942879", "Asp->Lys": "NT=Asp->Lys;AC=1070;CF=H(7) C(2) N O(-2);MM=13.06802", "Asp->Met": "NT=Asp->Met;AC=1071;CF=H(4) C O(-2) S;MM=16.013542", "Asp->Pro": "NT=Asp->Pro;AC=1072;CF=H(2) C O(-2);MM=-17.974179", "Asp->Gln": "NT=Asp->Gln;AC=1073;CF=H(3) C N O(-1);MM=13.031634", "Asp->Arg": "NT=Asp->Arg;AC=1074;CF=H(7) C(2) N(3) O(-2);MM=41.074168", "Asp->Ser": "NT=Asp->Ser;AC=1075;CF=C(-1) O(-1);MM=-27.994915", "Asp->Thr": "NT=Asp->Thr;AC=1076;CF=H(2) O(-1);MM=-13.979265", "Asp->Trp": "NT=Asp->Trp;AC=1077;CF=H(5) C(7) N O(-2);MM=71.05237", "Glu->Cys": "NT=Glu->Cys;AC=1078;CF=H(-2) C(-2) O(-2) S;MM=-26.033409", "Glu->Phe": "NT=Glu->Phe;AC=1079;CF=H(2) C(4) O(-2);MM=18.025821", "Glu->His": "NT=Glu->His;AC=1080;CF=C N(2) O(-2);MM=8.016319", "Glu->Xle": "NT=Glu->Xle;AC=1081;CF=H(4) C O(-2);MM=-15.958529", "Glu->Met": "NT=Glu->Met;AC=1082;CF=H(2) O(-2) S;MM=1.997892", "Glu->Asn": "NT=Glu->Asn;AC=1083;CF=H(-1) C(-1) N O(-1);MM=-14.999666", "Glu->Pro": "NT=Glu->Pro;AC=1084;CF=O(-2);MM=-31.989829", "Glu->Arg": "NT=Glu->Arg;AC=1085;CF=H(5) C N(3) O(-2);MM=27.058518", "Glu->Ser": "NT=Glu->Ser;AC=1086;CF=H(-2) C(-2) O(-1);MM=-42.010565", "Glu->Thr": "NT=Glu->Thr;AC=1087;CF=C(-1) O(-1);MM=-27.994915", "Glu->Trp": "NT=Glu->Trp;AC=1088;CF=H(3) C(6) N O(-2);MM=57.03672", "Glu->Tyr": "NT=Glu->Tyr;AC=1089;CF=H(2) C(4) O(-1);MM=34.020735", "Phe->Ala": "NT=Phe->Ala;AC=1090;CF=H(-4) C(-6);MM=-76.0313", "Phe->Asp": "NT=Phe->Asp;AC=1091;CF=H(-4) C(-5) O(2);MM=-32.041471", "Phe->Glu": "NT=Phe->Glu;AC=1092;CF=H(-2) C(-4) O(2);MM=-18.025821", "Phe->Gly": "NT=Phe->Gly;AC=1093;CF=H(-6) C(-7);MM=-90.04695", "Phe->His": "NT=Phe->His;AC=1094;CF=H(-2) C(-3) N(2);MM=-10.009502", "Phe->Lys": "NT=Phe->Lys;AC=1095;CF=H(3) C(-3) N;MM=-18.973451", "Phe->Met": "NT=Phe->Met;AC=1096;CF=C(-4) S;MM=-16.027929", "Phe->Asn": "NT=Phe->Asn;AC=1097;CF=H(-3) C(-5) N O;MM=-33.025486", "Phe->Pro": "NT=Phe->Pro;AC=1098;CF=H(-2) C(-4);MM=-50.01565", "Phe->Gln": "NT=Phe->Gln;AC=1099;CF=H(-1) C(-4) N O;MM=-19.009836", "Phe->Arg": "NT=Phe->Arg;AC=1100;CF=H(3) C(-3) N(3);MM=9.032697", "Phe->Thr": "NT=Phe->Thr;AC=1101;CF=H(-2) C(-5) O;MM=-46.020735", "Phe->Trp": "NT=Phe->Trp;AC=1102;CF=H C(2) N;MM=39.010899", "Gly->Phe": "NT=Gly->Phe;AC=1103;CF=H(6) C(7);MM=90.04695", "Gly->His": "NT=Gly->His;AC=1104;CF=H(4) C(4) N(2);MM=80.037448", "Gly->Xle": "NT=Gly->Xle;AC=1105;CF=H(8) C(4);MM=56.0626", "Gly->Lys": "NT=Gly->Lys;AC=1106;CF=H(9) C(4) N;MM=71.073499", "Gly->Met": "NT=Gly->Met;AC=1107;CF=H(6) C(3) S;MM=74.019021", "Gly->Asn": "NT=Gly->Asn;AC=1108;CF=H(3) C(2) N O;MM=57.021464", "Gly->Pro": "NT=Gly->Pro;AC=1109;CF=H(4) C(3);MM=40.0313", "Gly->Gln": "NT=Gly->Gln;AC=1110;CF=H(5) C(3) N O;MM=71.037114", "Gly->Thr": "NT=Gly->Thr;AC=1111;CF=H(4) C(2) O;MM=44.026215", "Gly->Tyr": "NT=Gly->Tyr;AC=1112;CF=H(6) C(7) O;MM=106.041865", "His->Ala": "NT=His->Ala;AC=1113;CF=H(-2) C(-3) N(-2);MM=-66.021798", "His->Cys": "NT=His->Cys;AC=1114;CF=H(-2) C(-3) N(-2) S;MM=-34.049727", "His->Glu": "NT=His->Glu;AC=1115;CF=C(-1) N(-2) O(2);MM=-8.016319", "His->Phe": "NT=His->Phe;AC=1116;CF=H(2) C(3) N(-2);MM=10.009502", "His->Gly": "NT=His->Gly;AC=1117;CF=H(-4) C(-4) N(-2);MM=-80.037448", "His->Lys": "NT=His->Lys;AC=1119;CF=H(5) N(-1);MM=-8.963949", "His->Met": "NT=His->Met;AC=1120;CF=H(2) C(-1) N(-2) S;MM=-6.018427", "His->Ser": "NT=His->Ser;AC=1121;CF=H(-2) C(-3) N(-2) O;MM=-50.026883", "His->Thr": "NT=His->Thr;AC=1122;CF=C(-2) N(-2) O;MM=-36.011233", "His->Val": "NT=His->Val;AC=1123;CF=H(2) C(-1) N(-2);MM=-37.990498", "His->Trp": "NT=His->Trp;AC=1124;CF=H(3) C(5) N(-1);MM=49.020401", "Xle->Ala": "NT=Xle->Ala;AC=1125;CF=H(-6) C(-3);MM=-42.04695", "Xle->Cys": "NT=Xle->Cys;AC=1126;CF=H(-6) C(-3) S;MM=-10.07488", "Xle->Asp": "NT=Xle->Asp;AC=1127;CF=H(-6) C(-2) O(2);MM=1.942879", "Xle->Glu": "NT=Xle->Glu;AC=1128;CF=H(-4) C(-1) O(2);MM=15.958529", "Xle->Gly": "NT=Xle->Gly;AC=1129;CF=H(-8) C(-4);MM=-56.0626", "Xle->Tyr": "NT=Xle->Tyr;AC=1130;CF=H(-2) C(3) O;MM=49.979265", "Lys->Ala": "NT=Lys->Ala;AC=1131;CF=H(-7) C(-3) N(-1);MM=-57.057849", "Lys->Cys": "NT=Lys->Cys;AC=1132;CF=H(-7) C(-3) N(-1) S;MM=-25.085779", "Lys->Asp": "NT=Lys->Asp;AC=1133;CF=H(-7) C(-2) N(-1) O(2);MM=-13.06802", "Lys->Phe": "NT=Lys->Phe;AC=1134;CF=H(-3) C(3) N(-1);MM=18.973451", "Lys->Gly": "NT=Lys->Gly;AC=1135;CF=H(-9) C(-4) N(-1);MM=-71.073499", "Lys->His": "NT=Lys->His;AC=1136;CF=H(-5) N;MM=8.963949", "Lys->Pro": "NT=Lys->Pro;AC=1137;CF=H(-5) C(-1) N(-1);MM=-31.042199", "Lys->Ser": "NT=Lys->Ser;AC=1138;CF=H(-7) C(-3) N(-1) O;MM=-41.062935", "Lys->Val": "NT=Lys->Val;AC=1139;CF=H(-3) C(-1) N(-1);MM=-29.026549", "Lys->Trp": "NT=Lys->Trp;AC=1140;CF=H(-2) C(5);MM=57.98435", "Lys->Tyr": "NT=Lys->Tyr;AC=1141;CF=H(-3) C(3) N(-1) O;MM=34.968366", "Met->Ala": "NT=Met->Ala;AC=1142;CF=H(-4) C(-2) S(-1);MM=-60.003371", "Met->Cys": "NT=Met->Cys;AC=1143;CF=H(-4) C(-2);MM=-28.0313", "Met->Asp": "NT=Met->Asp;AC=1144;CF=H(-4) C(-1) O(2) S(-1);MM=-16.013542", "Met->Glu": "NT=Met->Glu;AC=1145;CF=H(-2) O(2) S(-1);MM=-1.997892", "Met->Phe": "NT=Met->Phe;AC=1146;CF=C(4) S(-1);MM=16.027929", "Met->Gly": "NT=Met->Gly;AC=1147;CF=H(-6) C(-3) S(-1);MM=-74.019021", "Met->His": "NT=Met->His;AC=1148;CF=H(-2) C N(2) S(-1);MM=6.018427", "Met->Asn": "NT=Met->Asn;AC=1149;CF=H(-3) C(-1) N O S(-1);MM=-16.997557", "Met->Pro": "NT=Met->Pro;AC=1150;CF=H(-2) S(-1);MM=-33.987721", "Met->Gln": "NT=Met->Gln;AC=1151;CF=H(-1) N O S(-1);MM=-2.981907", "Met->Ser": "NT=Met->Ser;AC=1152;CF=H(-4) C(-2) O S(-1);MM=-44.008456", "Met->Trp": "NT=Met->Trp;AC=1153;CF=H C(6) N S(-1);MM=55.038828", "Met->Tyr": "NT=Met->Tyr;AC=1154;CF=C(4) O S(-1);MM=32.022844", "Asn->Ala": "NT=Asn->Ala;AC=1155;CF=H(-1) C(-1) N(-1) O(-1);MM=-43.005814", "Asn->Cys": "NT=Asn->Cys;AC=1156;CF=H(-1) C(-1) N(-1) O(-1) S;MM=-11.033743", "Asn->Glu": "NT=Asn->Glu;AC=1157;CF=H C N(-1) O;MM=14.999666", "Asn->Phe": "NT=Asn->Phe;AC=1158;CF=H(3) C(5) N(-1) O(-1);MM=33.025486", "Asn->Gly": "NT=Asn->Gly;AC=1159;CF=H(-3) C(-2) N(-1) O(-1);MM=-57.021464", "Asn->Met": "NT=Asn->Met;AC=1160;CF=H(3) C N(-1) O(-1) S;MM=16.997557", "Asn->Pro": "NT=Asn->Pro;AC=1161;CF=H C N(-1) O(-1);MM=-16.990164", "Asn->Gln": "NT=Asn->Gln;AC=1162;CF=H(2) C;MM=14.01565", "Asn->Arg": "NT=Asn->Arg;AC=1163;CF=H(6) C(2) N(2) O(-1);MM=42.058184", "Asn->Val": "NT=Asn->Val;AC=1164;CF=H(3) C N(-1) O(-1);MM=-14.974514", "Asn->Trp": "NT=Asn->Trp;AC=1165;CF=H(4) C(7) O(-1);MM=72.036386", "Pro->Cys": "NT=Pro->Cys;AC=1166;CF=H(-2) C(-2) S;MM=5.956421", "Pro->Asp": "NT=Pro->Asp;AC=1167;CF=H(-2) C(-1) O(2);MM=17.974179", "Pro->Glu": "NT=Pro->Glu;AC=1168;CF=O(2);MM=31.989829", "Pro->Phe": "NT=Pro->Phe;AC=1169;CF=H(2) C(4);MM=50.01565", "Pro->Gly": "NT=Pro->Gly;AC=1170;CF=H(-4) C(-3);MM=-40.0313", "Pro->Lys": "NT=Pro->Lys;AC=1171;CF=H(5) C N;MM=31.042199", "Pro->Met": "NT=Pro->Met;AC=1172;CF=H(2) S;MM=33.987721", "Pro->Asn": "NT=Pro->Asn;AC=1173;CF=H(-1) C(-1) N O;MM=16.990164", "Pro->Val": "NT=Pro->Val;AC=1174;CF=H(2);MM=2.01565", "Pro->Trp": "NT=Pro->Trp;AC=1175;CF=H(3) C(6) N;MM=89.026549", "Pro->Tyr": "NT=Pro->Tyr;AC=1176;CF=H(2) C(4) O;MM=66.010565", "Gln->Ala": "NT=Gln->Ala;AC=1177;CF=H(-3) C(-2) N(-1) O(-1);MM=-57.021464", "Gln->Cys": "NT=Gln->Cys;AC=1178;CF=H(-3) C(-2) N(-1) O(-1) S;MM=-25.049393", "Gln->Asp": "NT=Gln->Asp;AC=1179;CF=H(-3) C(-1) N(-1) O;MM=-13.031634", "Gln->Phe": "NT=Gln->Phe;AC=1180;CF=H C(4) N(-1) O(-1);MM=19.009836", "Gln->Gly": "NT=Gln->Gly;AC=1181;CF=H(-5) C(-3) N(-1) O(-1);MM=-71.037114", "Gln->Met": "NT=Gln->Met;AC=1182;CF=H N(-1) O(-1) S;MM=2.981907", "Gln->Asn": "NT=Gln->Asn;AC=1183;CF=H(-2) C(-1);MM=-14.01565", "Gln->Ser": "NT=Gln->Ser;AC=1184;CF=H(-3) C(-2) N(-1);MM=-41.026549", "Gln->Thr": "NT=Gln->Thr;AC=1185;CF=H(-1) C(-1) N(-1);MM=-27.010899", "Gln->Val": "NT=Gln->Val;AC=1186;CF=H N(-1) O(-1);MM=-28.990164", "Gln->Trp": "NT=Gln->Trp;AC=1187;CF=H(2) C(6) O(-1);MM=58.020735", "Gln->Tyr": "NT=Gln->Tyr;AC=1188;CF=H C(4) N(-1);MM=35.004751", "Arg->Ala": "NT=Arg->Ala;AC=1189;CF=H(-7) C(-3) N(-3);MM=-85.063997", "Arg->Asp": "NT=Arg->Asp;AC=1190;CF=H(-7) C(-2) N(-3) O(2);MM=-41.074168", "Arg->Glu": "NT=Arg->Glu;AC=1191;CF=H(-5) C(-1) N(-3) O(2);MM=-27.058518", "Arg->Asn": "NT=Arg->Asn;AC=1192;CF=H(-6) C(-2) N(-2) O;MM=-42.058184", "Arg->Val": "NT=Arg->Val;AC=1193;CF=H(-3) C(-1) N(-3);MM=-57.032697", "Arg->Tyr": "NT=Arg->Tyr;AC=1194;CF=H(-3) C(3) N(-3) O;MM=6.962218", "Arg->Phe": "NT=Arg->Phe;AC=1195;CF=H(-3) C(3) N(-3);MM=-9.032697", "Ser->Asp": "NT=Ser->Asp;AC=1196;CF=C O;MM=27.994915", "Ser->Glu": "NT=Ser->Glu;AC=1197;CF=H(2) C(2) O;MM=42.010565", "Ser->His": "NT=Ser->His;AC=1198;CF=H(2) C(3) N(2) O(-1);MM=50.026883", "Ser->Lys": "NT=Ser->Lys;AC=1199;CF=H(7) C(3) N O(-1);MM=41.062935", "Ser->Met": "NT=Ser->Met;AC=1200;CF=H(4) C(2) O(-1) S;MM=44.008456", "Ser->Gln": "NT=Ser->Gln;AC=1201;CF=H(3) C(2) N;MM=41.026549", "Ser->Val": "NT=Ser->Val;AC=1202;CF=H(4) C(2) O(-1);MM=12.036386", "Thr->Cys": "NT=Thr->Cys;AC=1203;CF=H(-2) C(-1) O(-1) S;MM=1.961506", "Thr->Asp": "NT=Thr->Asp;AC=1204;CF=H(-2) O;MM=13.979265", "Thr->Glu": "NT=Thr->Glu;AC=1205;CF=C O;MM=27.994915", "Thr->Phe": "NT=Thr->Phe;AC=1206;CF=H(2) C(5) O(-1);MM=46.020735", "Thr->Gly": "NT=Thr->Gly;AC=1207;CF=H(-4) C(-2) O(-1);MM=-44.026215", "Thr->His": "NT=Thr->His;AC=1208;CF=C(2) N(2) O(-1);MM=36.011233", "Thr->Gln": "NT=Thr->Gln;AC=1209;CF=H C N;MM=27.010899", "Thr->Val": "NT=Thr->Val;AC=1210;CF=H(2) C O(-1);MM=-1.979265", "Thr->Trp": "NT=Thr->Trp;AC=1211;CF=H(3) C(7) N O(-1);MM=85.031634", "Thr->Tyr": "NT=Thr->Tyr;AC=1212;CF=H(2) C(5);MM=62.01565", "Val->Cys": "NT=Val->Cys;AC=1213;CF=H(-4) C(-2) S;MM=3.940771", "Val->His": "NT=Val->His;AC=1214;CF=H(-2) C N(2);MM=37.990498", "Val->Lys": "NT=Val->Lys;AC=1215;CF=H(3) C N;MM=29.026549", "Val->Asn": "NT=Val->Asn;AC=1216;CF=H(-3) C(-1) N O;MM=14.974514", "Val->Pro": "NT=Val->Pro;AC=1217;CF=H(-2);MM=-2.01565", "Val->Gln": "NT=Val->Gln;AC=1218;CF=H(-1) N O;MM=28.990164", "Val->Arg": "NT=Val->Arg;AC=1219;CF=H(3) C N(3);MM=57.032697", "Val->Ser": "NT=Val->Ser;AC=1220;CF=H(-4) C(-2) O;MM=-12.036386", "Val->Thr": "NT=Val->Thr;AC=1221;CF=H(-2) C(-1) O;MM=1.979265", "Val->Trp": "NT=Val->Trp;AC=1222;CF=H C(6) N;MM=87.010899", "Val->Tyr": "NT=Val->Tyr;AC=1223;CF=C(4) O;MM=63.994915", "Trp->Ala": "NT=Trp->Ala;AC=1224;CF=H(-5) C(-8) N(-1);MM=-115.042199", "Trp->Asp": "NT=Trp->Asp;AC=1225;CF=H(-5) C(-7) N(-1) O(2);MM=-71.05237", "Trp->Glu": "NT=Trp->Glu;AC=1226;CF=H(-3) C(-6) N(-1) O(2);MM=-57.03672", "Trp->Phe": "NT=Trp->Phe;AC=1227;CF=H(-1) C(-2) N(-1);MM=-39.010899", "Trp->His": "NT=Trp->His;AC=1228;CF=H(-3) C(-5) N;MM=-49.020401", "Trp->Lys": "NT=Trp->Lys;AC=1229;CF=H(2) C(-5);MM=-57.98435", "Trp->Met": "NT=Trp->Met;AC=1230;CF=H(-1) C(-6) N(-1) S;MM=-55.038828", "Trp->Asn": "NT=Trp->Asn;AC=1231;CF=H(-4) C(-7) O;MM=-72.036386", "Trp->Pro": "NT=Trp->Pro;AC=1232;CF=H(-3) C(-6) N(-1);MM=-89.026549", "Trp->Gln": "NT=Trp->Gln;AC=1233;CF=H(-2) C(-6) O;MM=-58.020735", "Trp->Thr": "NT=Trp->Thr;AC=1234;CF=H(-3) C(-7) N(-1) O;MM=-85.031634", "Trp->Val": "NT=Trp->Val;AC=1235;CF=H(-1) C(-6) N(-1);MM=-87.010899", "Trp->Tyr": "NT=Trp->Tyr;AC=1236;CF=H(-1) C(-2) N(-1) O;MM=-23.015984", "Tyr->Ala": "NT=Tyr->Ala;AC=1237;CF=H(-4) C(-6) O(-1);MM=-92.026215", "Tyr->Glu": "NT=Tyr->Glu;AC=1238;CF=H(-2) C(-4) O;MM=-34.020735", "Tyr->Gly": "NT=Tyr->Gly;AC=1239;CF=H(-6) C(-7) O(-1);MM=-106.041865", "Tyr->Lys": "NT=Tyr->Lys;AC=1240;CF=H(3) C(-3) N O(-1);MM=-34.968366", "Tyr->Met": "NT=Tyr->Met;AC=1241;CF=C(-4) O(-1) S;MM=-32.022844", "Tyr->Pro": "NT=Tyr->Pro;AC=1242;CF=H(-2) C(-4) O(-1);MM=-66.010565", "Tyr->Gln": "NT=Tyr->Gln;AC=1243;CF=H(-1) C(-4) N;MM=-35.004751", "Tyr->Arg": "NT=Tyr->Arg;AC=1244;CF=H(3) C(-3) N(3) O(-1);MM=-6.962218", "Tyr->Thr": "NT=Tyr->Thr;AC=1245;CF=H(-2) C(-5);MM=-62.01565", "Tyr->Val": "NT=Tyr->Val;AC=1246;CF=C(-4) O(-1);MM=-63.994915", "Tyr->Trp": "NT=Tyr->Trp;AC=1247;CF=H C(2) N O(-1);MM=23.015984", "Tyr->Xle": "NT=Tyr->Xle;AC=1248;CF=H(2) C(-3) O(-1);MM=-49.979265", "AHA-SS": "NT=AHA-SS;AC=1249;CF=H(9) C(7) N(5) O(2);MM=195.075625", "AHA-SS_CAM": "NT=AHA-SS_CAM;AC=1250;CF=H(12) C(9) N(6) O(3);MM=252.097088", "Biotin:Thermo-33033": "NT=Biotin:Thermo-33033;AC=1251;CF=H(36) C(25) N(6) O(4) S(2);MM=548.223945", "Biotin:Thermo-33033-H": "NT=Biotin:Thermo-33033-H;AC=1252;CF=H(34) C(25) N(6) O(4) S(2);MM=546.208295", "2-monomethylsuccinyl": "NT=2-monomethylsuccinyl;AC=1253;CF=H(6) C(5) O(4);MM=130.026609", "Saligenin": "NT=Saligenin;AC=1254;CF=H(6) C(7) O;MM=106.041865", "Cresylphosphate": "NT=Cresylphosphate;AC=1255;CF=H(7) C(7) O(3) P;MM=170.013281", "CresylSaligeninPhosphate": "NT=CresylSaligeninPhosphate;AC=1256;CF=H(13) C(14) O(4) P;MM=276.055146", "Ub-Br2": "NT=Ub-Br2;AC=1257;CF=H(8) C(4) N(2) O;MM=100.063663", "Ub-VME": "NT=Ub-VME;AC=1258;CF=H(12) C(7) N(2) O(3);MM=172.084792", "Ub-fluorescein": "NT=Ub-fluorescein;AC=1261;CF=H(29) C(31) N(6) O(7);MM=597.209772", "2-dimethylsuccinyl": "NT=2-dimethylsuccinyl;AC=1262;CF=H(8) C(6) O(4);MM=144.042259", "Gly": "NT=Gly;AC=1263;CF=H(3) C(2) N O;MM=57.021464", "pupylation": "NT=pupylation;AC=1264;CF=H(13) C(9) N(3) O(5);MM=243.085521", "Label:13C(4)": "NT=Label:13C(4);AC=1266;CF=C(-4) 13C(4);MM=4.013419", "Label:13C(4)+Oxidation": "NT=Label:13C(4)+Oxidation;AC=1267;CF=C(-4) 13C(4) O;MM=20.008334", "HCysThiolactone": "NT=HCysThiolactone;AC=1270;CF=H(7) C(4) N O S;MM=117.024835", "HCysteinyl": "NT=HCysteinyl;AC=1271;CF=H(7) C(4) N O(2) S;MM=133.019749", "UgiJoullie": "NT=UgiJoullie;AC=1276;CF=H(60) C(47) N(23) O(10);MM=1106.48935", "Dipyridyl": "NT=Dipyridyl;AC=1277;CF=H(11) C(13) N(3) O;MM=225.090212", "Furan": "NT=Furan;AC=1278;CF=H(2) C(4) O;MM=66.010565", "Difuran": "NT=Difuran;AC=1279;CF=H(4) C(8) O(2);MM=132.021129", "BMP-piperidinol": "NT=BMP-piperidinol;AC=1281;CF=H(17) C(18) N O;MM=263.131014", "UgiJoullieProGly": "NT=UgiJoullieProGly;AC=1282;CF=H(10) C(7) N(2) O(2);MM=154.074228", "UgiJoullieProGlyProGly": "NT=UgiJoullieProGlyProGly;AC=1283;CF=H(20) C(14) N(4) O(4);MM=308.148455", "IMEHex(2)NeuAc(1)": "NT=IMEHex(2)NeuAc(1);AC=1286;CF=H(3) C(2) N S Hex(2) NeuAc;MM=688.199683", "Arg-loss": "NT=Arg-loss;AC=1287;CF=H(-12) C(-6) N(-4) O(-1);MM=-156.101111", "Arg": "NT=Arg;AC=1288;CF=H(12) C(6) N(4) O;MM=156.101111", "Butyryl": "NT=Butyryl;AC=1289;CF=H(6) C(4) O;MM=70.041865", "Dicarbamidomethyl": "NT=Dicarbamidomethyl;AC=1290;CF=H(6) C(4) N(2) O(2);MM=114.042927", "Dimethyl:2H(6)": "NT=Dimethyl:2H(6);AC=1291;CF=H(-2) 2H(6) C(2);MM=34.068961", "GGQ": "NT=GGQ;AC=1292;CF=H(14) C(9) N(4) O(4);MM=242.101505", "QTGG": "NT=QTGG;AC=1293;CF=H(21) C(13) N(5) O(6);MM=343.149184", "Label:13C(3)": "NT=Label:13C(3);AC=1296;CF=C(-3) 13C(3);MM=3.010064", "Label:13C(3)15N(1)": "NT=Label:13C(3)15N(1);AC=1297;CF=C(-3) 13C(3) N(-1) 15N;MM=4.007099", "Label:13C(4)15N(1)": "NT=Label:13C(4)15N(1);AC=1298;CF=C(-4) 13C(4) N(-1) 15N;MM=5.010454", "Label:2H(10)": "NT=Label:2H(10);AC=1299;CF=H(-10) 2H(10);MM=10.062767", "Label:2H(4)13C(1)": "NT=Label:2H(4)13C(1);AC=1300;CF=H(-4) 2H(4) C(-1) 13C;MM=5.028462", "Lys": "NT=Lys;AC=1301;CF=H(12) C(6) N(2) O;MM=128.094963", "mTRAQ:13C(6)15N(2)": "NT=mTRAQ:13C(6)15N(2);AC=1302;CF=H(12) C 13C(6) 15N(2) O;MM=148.109162", "NeuAc": "NT=NeuAc;AC=1303;CF=NeuAc;MM=291.095417", "NeuGc": "NT=NeuGc;AC=1304;CF=NeuGc;MM=307.090331", "Propyl": "NT=Propyl;AC=1305;CF=H(6) C(3);MM=42.04695", "Propyl:2H(6)": "NT=Propyl:2H(6);AC=1306;CF=2H(6) C(3);MM=48.084611", "Propiophenone": "NT=Propiophenone;AC=1310;CF=H(8) C(9) O;MM=132.057515", "Delta:H(6)C(3)O(1)": "NT=Delta:H(6)C(3)O(1);AC=1312;CF=H(6) C(3) O;MM=58.041865", "Delta:H(8)C(6)O(1)": "NT=Delta:H(8)C(6)O(1);AC=1313;CF=H(8) C(6) O;MM=96.057515", "biotinAcrolein298": "NT=biotinAcrolein298;AC=1314;CF=H(22) C(13) N(4) O(2) S;MM=298.146347", "MM-diphenylpentanone": "NT=MM-diphenylpentanone;AC=1315;CF=H(19) C(18) N O;MM=265.146664", "EHD-diphenylpentanone": "NT=EHD-diphenylpentanone;AC=1317;CF=H(18) C(18) O(2);MM=266.13068", "Biotin:Thermo-21901+2H2O": "NT=Biotin:Thermo-21901+2H2O;AC=1320;CF=H(39) C(23) N(5) O(9) S;MM=561.246849", "DiLeu4plex115": "NT=DiLeu4plex115;AC=1321;CF=H(15) C(7) 13C 15N 18O;MM=145.12", "DiLeu4plex": "NT=DiLeu4plex;AC=1322;CF=H(13) 2H(2) C(8) N 18O;MM=145.132163", "DiLeu4plex117": "NT=DiLeu4plex117;AC=1323;CF=H(13) 2H(2) C(7) 13C 15N O;MM=145.128307", "DiLeu4plex118": "NT=DiLeu4plex118;AC=1324;CF=H(11) 2H(4) C(8) N O;MM=145.140471", "NEMsulfur": "NT=NEMsulfur;AC=1326;CF=H(7) C(6) N O(2) S;MM=157.019749", "SulfurDioxide": "NT=SulfurDioxide;AC=1327;CF=O(2) S;MM=63.9619", "NEMsulfurWater": "NT=NEMsulfurWater;AC=1328;CF=H(9) C(6) N O(3) S;MM=175.030314", "bisANS-sulfonates": "NT=bisANS-sulfonates;AC=1330;CF=H(22) C(32) N(2);MM=434.178299", "DNCB_hapten": "NT=DNCB_hapten;AC=1331;CF=H(2) C(6) N(2) O(4);MM=166.001457", "Biotin:Thermo-21911": "NT=Biotin:Thermo-21911;AC=1340;CF=H(71) C(41) N(5) O(16) S;MM=921.461652", "iodoTMT": "NT=iodoTMT;AC=1341;CF=H(28) C(16) N(4) O(3);MM=324.216141", "iodoTMT6plex": "NT=iodoTMT6plex;AC=1342;CF=H(28) C(12) 13C(4) N(3) 15N O(3);MM=329.226595", "Phosphogluconoylation": "NT=Phosphogluconoylation;AC=1344;CF=H(11) C(6) O(9) P;MM=258.014069", "PS_Hapten": "NT=PS_Hapten;AC=1345;CF=H(4) C(7) O(2);MM=120.021129", "Cy3-maleimide": "NT=Cy3-maleimide;AC=1348;CF=H(45) C(37) N(4) O(9) S(2);MM=753.262796", "benzylguanidine": "NT=benzylguanidine;AC=1349;CF=H(8) C(8) N(2);MM=132.068748", "CarboxymethylDMAP": "NT=CarboxymethylDMAP;AC=1350;CF=H(10) C(9) N(2) O;MM=162.079313", "azole": "NT=azole;AC=1355;CF=H(-4) O(-1);MM=-20.026215", "phosphoRibosyl": "NT=phosphoRibosyl;AC=1356;CF=H(9) C(5) O(7) P;MM=212.00859", "NEM:2H(5)+H2O": "NT=NEM:2H(5)+H2O;AC=1358;CF=H(4) 2H(5) C(6) N O(3);MM=148.089627", "Crotonyl": "NT=Crotonyl;AC=1363;CF=H(4) C(4) O;MM=68.026215", "O-Et-N-diMePhospho": "NT=O-Et-N-diMePhospho;AC=1364;CF=H(10) C(4) N O(2) P;MM=135.044916", "N-dimethylphosphate": "NT=N-dimethylphosphate;AC=1365;CF=H(6) C(2) N O(2) P;MM=107.013615", "dHex(1)Hex(1)": "NT=dHex(1)Hex(1);AC=1367;CF=dHex Hex;MM=308.110732", "Methyl:2H(3)+Acetyl:2H(3)": "NT=Methyl:2H(3)+Acetyl:2H(3);AC=1368;CF=H(-2) 2H(6) C(3) O;MM=62.063875", "Label:2H(3)+Oxidation": "NT=Label:2H(3)+Oxidation;AC=1370;CF=H(-3) 2H(3) O;MM=19.013745", "Trimethyl:2H(9)": "NT=Trimethyl:2H(9);AC=1371;CF=H(-3) 2H(9) C(3);MM=51.103441", "Acetyl:13C(2)": "NT=Acetyl:13C(2);AC=1372;CF=H(2) 13C(2) O;MM=44.017274", "dHex(1)Hex(2)": "NT=dHex(1)Hex(2);AC=1375;CF=dHex Hex(2);MM=470.163556", "dHex(1)Hex(3)": "NT=dHex(1)Hex(3);AC=1376;CF=dHex Hex(3);MM=632.216379", "dHex(1)Hex(4)": "NT=dHex(1)Hex(4);AC=1377;CF=dHex Hex(4);MM=794.269203", "dHex(1)Hex(5)": "NT=dHex(1)Hex(5);AC=1378;CF=dHex Hex(5);MM=956.322026", "dHex(1)Hex(6)": "NT=dHex(1)Hex(6);AC=1379;CF=dHex Hex(6);MM=1118.37485", "methylsulfonylethyl": "NT=methylsulfonylethyl;AC=1380;CF=H(6) C(3) O(2) S;MM=106.00885", "ethylsulfonylethyl": "NT=ethylsulfonylethyl;AC=1381;CF=H(8) C(4) O(2) S;MM=120.0245", "phenylsulfonylethyl": "NT=phenylsulfonylethyl;AC=1382;CF=H(8) C(8) O(2) S;MM=168.0245", "PyridoxalPhosphateH2": "NT=PyridoxalPhosphateH2;AC=1383;CF=H(10) C(8) N O(5) P;MM=231.02966", "Homocysteic_acid": "NT=Homocysteic_acid;AC=1384;CF=H(-2) C(-1) O(3);MM=33.969094", "Hydroxamic_acid": "NT=Hydroxamic_acid;AC=1385;CF=H N;MM=15.010899", "3-phosphoglyceryl": "NT=3-phosphoglyceryl;AC=1387;CF=H(5) C(3) O(6) P;MM=167.982375", "HN2_mustard": "NT=HN2_mustard;AC=1388;CF=H(11) C(5) N O;MM=101.084064", "HN3_mustard": "NT=HN3_mustard;AC=1389;CF=H(13) C(6) N O(2);MM=131.094629", "Oxidation+NEM": "NT=Oxidation+NEM;AC=1390;CF=H(7) C(6) N O(3);MM=141.042593", "NHS-fluorescein": "NT=NHS-fluorescein;AC=1391;CF=H(21) C(27) N O(7);MM=471.131802", "DiART6plex": "NT=DiART6plex;AC=1392;CF=H(20) C(7) 13C(4) N 15N O(2);MM=217.162932", "DiART6plex115": "NT=DiART6plex115;AC=1393;CF=H(20) C(8) 13C(3) 15N(2) O(2);MM=217.156612", "DiART6plex116/119": "NT=DiART6plex116/119;AC=1394;CF=H(18) 2H(2) C(9) 13C(2) N 15N O(2);MM=217.168776", "DiART6plex117": "NT=DiART6plex117;AC=1395;CF=H(18) 2H(2) C(10) 13C 15N(2) O(2);MM=217.162456", "DiART6plex118": "NT=DiART6plex118;AC=1396;CF=H(18) 2H(2) C(8) 13C(3) N(2) O(2);MM=217.175096", "Iodoacetanilide": "NT=Iodoacetanilide;AC=1397;CF=H(7) C(8) N O;MM=133.052764", "Iodoacetanilide:13C(6)": "NT=Iodoacetanilide:13C(6);AC=1398;CF=H(7) C(2) 13C(6) N O;MM=139.072893", "Dap-DSP": "NT=Dap-DSP;AC=1399;CF=H(20) C(13) N(2) O(6) S(2);MM=364.076278", "MurNAc": "NT=MurNAc;AC=1400;CF=O(-1) NeuAc;MM=275.100502", "Label:2H(7)15N(4)": "NT=Label:2H(7)15N(4);AC=1402;CF=H(-7) 2H(7) N(-4) 15N(4);MM=11.032077", "Label:2H(6)15N(1)": "NT=Label:2H(6)15N(1);AC=1403;CF=H(-6) 2H(6) N(-1) 15N;MM=7.034695", "EEEDVIEVYQEQTGG": "NT=EEEDVIEVYQEQTGG;AC=1405;CF=H(107) C(72) N(17) O(31);MM=1705.73189", "EDEDTIDVFQQQTGG": "NT=EDEDTIDVFQQQTGG;AC=1406;CF=H(102) C(69) N(18) O(30);MM=1662.700924", "Hex(5)HexNAc(4)NeuAc(2)": "NT=Hex(5)HexNAc(4)NeuAc(2);AC=1408;CF=Hex(5) HexNAc(4) NeuAc(2);MM=2204.772441", "Hex(5)HexNAc(4)NeuAc(1)": "NT=Hex(5)HexNAc(4)NeuAc(1);AC=1409;CF=Hex(5) HexNAc(4) NeuAc;MM=1913.677025", "dHex(1)Hex(5)HexNAc(4)NeuAc(1)": "NT=dHex(1)Hex(5)HexNAc(4)NeuAc(1);AC=1410;CF=dHex Hex(5) HexNAc(4) NeuAc;MM=2059.734933", "dHex(1)Hex(5)HexNAc(4)NeuAc(2)": "NT=dHex(1)Hex(5)HexNAc(4)NeuAc(2);AC=1411;CF=dHex Hex(5) HexNAc(4) NeuAc(2);MM=2350.83035", "s-GlcNAc": "NT=s-GlcNAc;AC=1412;CF=O(3) S HexNAc;MM=283.036187", "PhosphoHex(2)": "NT=PhosphoHex(2);AC=1413;CF=H O(3) P Hex(2);MM=404.071978", "Trimethyl:13C(3)2H(9)": "NT=Trimethyl:13C(3)2H(9);AC=1414;CF=H(-3) 2H(9) 13C(3);MM=54.113505", "15N-oxobutanoic": "NT=15N-oxobutanoic;AC=1419;CF=H(-3) 15N(-1);MM=-18.023584", "spermine": "NT=spermine;AC=1420;CF=H(23) C(10) N(3);MM=185.189198", "spermidine": "NT=spermidine;AC=1421;CF=H(16) C(7) N(2);MM=128.131349", "Biotin:Thermo-21330": "NT=Biotin:Thermo-21330;AC=1423;CF=H(35) C(21) N(3) O(7) S;MM=473.219571", "Pentose": "NT=Pentose;AC=1425;CF=Pent;MM=132.042259", "Hex(1)Pent(1)": "NT=Hex(1)Pent(1);AC=1426;CF=Pent Hex;MM=294.095082", "Hex(1)HexA(1)": "NT=Hex(1)HexA(1);AC=1427;CF=Hex HexA;MM=338.084912", "Hex(1)Pent(2)": "NT=Hex(1)Pent(2);AC=1428;CF=Pent(2) Hex;MM=426.137341", "Hex(1)HexNAc(1)Phos(1)": "NT=Hex(1)HexNAc(1)Phos(1);AC=1429;CF=H O(3) P Hex HexNAc;MM=445.098527", "Hex(1)HexNAc(1)Sulf(1)": "NT=Hex(1)HexNAc(1)Sulf(1);AC=1430;CF=O(3) S Hex HexNAc;MM=445.089011", "Hex(1)NeuAc(1)": "NT=Hex(1)NeuAc(1);AC=1431;CF=Hex NeuAc;MM=453.14824", "Hex(1)NeuGc(1)": "NT=Hex(1)NeuGc(1);AC=1432;CF=Hex NeuGc;MM=469.143155", "HexNAc(3)": "NT=HexNAc(3);AC=1433;CF=HexNAc(3);MM=609.238118", "HexNAc(1)NeuAc(1)": "NT=HexNAc(1)NeuAc(1);AC=1434;CF=HexNAc NeuAc;MM=494.174789", "HexNAc(1)NeuGc(1)": "NT=HexNAc(1)NeuGc(1);AC=1435;CF=HexNAc NeuGc;MM=510.169704", "Hex(1)HexNAc(1)dHex(1)Me(1)": "NT=Hex(1)HexNAc(1)dHex(1)Me(1);AC=1436;CF=Me dHex Hex HexNAc;MM=525.205755", "Hex(1)HexNAc(1)dHex(1)Me(2)": "NT=Hex(1)HexNAc(1)dHex(1)Me(2);AC=1437;CF=Me(2) dHex Hex HexNAc;MM=539.221405", "Hex(2)HexNAc(1)": "NT=Hex(2)HexNAc(1);AC=1438;CF=Hex(2) HexNAc;MM=527.18502", "Hex(1)HexA(1)HexNAc(1)": "NT=Hex(1)HexA(1)HexNAc(1);AC=1439;CF=Hex HexA HexNAc;MM=541.164284", "Hex(2)HexNAc(1)Me(1)": "NT=Hex(2)HexNAc(1)Me(1);AC=1440;CF=Me Hex(2) HexNAc;MM=541.20067", "Hex(1)Pent(3)": "NT=Hex(1)Pent(3);AC=1441;CF=Pent(3) Hex;MM=558.1796", "Hex(1)NeuAc(1)Pent(1)": "NT=Hex(1)NeuAc(1)Pent(1);AC=1442;CF=Pent Hex NeuAc;MM=585.190499", "Hex(2)HexNAc(1)Sulf(1)": "NT=Hex(2)HexNAc(1)Sulf(1);AC=1443;CF=O(3) S Hex(2) HexNAc;MM=607.141834", "Hex(2)NeuAc(1)": "NT=Hex(2)NeuAc(1);AC=1444;CF=Hex(2) NeuAc;MM=615.201064", "dHex(2)Hex(2)": "NT=dHex(2)Hex(2);AC=1445;CF=dHex(2) Hex(2);MM=616.221465", "dHex(1)Hex(2)HexA(1)": "NT=dHex(1)Hex(2)HexA(1);AC=1446;CF=dHex Hex(2) HexA;MM=646.195644", "Hex(1)HexNAc(2)Sulf(1)": "NT=Hex(1)HexNAc(2)Sulf(1);AC=1447;CF=O(3) S Hex HexNAc(2);MM=648.168383", "Hex(4)": "NT=Hex(4);AC=1448;CF=Hex(4);MM=648.211294", "dHex(1)Hex(2)HexNAc(2)Pent(1)": "NT=dHex(1)Hex(2)HexNAc(2)Pent(1);AC=1449;CF=dHex(1) Hex(2) HexNAc(2) Pent(1);MM=1008.36456", "Hex(2)HexNAc(2)NeuAc(1)": "NT=Hex(2)HexNAc(2)NeuAc(1);AC=1450;CF=Hex(2) HexNAc(2) NeuAc;MM=1021.359809", "Hex(3)HexNAc(2)Pent(1)": "NT=Hex(3)HexNAc(2)Pent(1);AC=1451;CF=Hex(3) HexNAc(2) Pent(1);MM=1024.359475", "Hex(4)HexNAc(2)": "NT=Hex(4)HexNAc(2);AC=1452;CF=Hex(4) HexNAc(2);MM=1054.370039", "dHex(1)Hex(4)HexNAc(1)Pent(1)": "NT=dHex(1)Hex(4)HexNAc(1)Pent(1);AC=1453;CF=dHex(1) Hex(4) HexNAc(1) Pent(1);MM=1129.390834", "dHex(1)Hex(3)HexNAc(2)Pent(1)": "NT=dHex(1)Hex(3)HexNAc(2)Pent(1);AC=1454;CF=dHex(1) Hex(3) HexNAc(2) Pent(1);MM=1170.417383", "Hex(3)HexNAc(2)NeuAc(1)": "NT=Hex(3)HexNAc(2)NeuAc(1);AC=1455;CF=Hex(3) HexNAc(2) NeuAc(1);MM=1183.412632", "Hex(4)HexNAc(2)Pent(1)": "NT=Hex(4)HexNAc(2)Pent(1);AC=1456;CF=Hex(4) HexNAc(2) Pent(1);MM=1186.412298", "Hex(3)HexNAc(3)Pent(1)": "NT=Hex(3)HexNAc(3)Pent(1);AC=1457;CF=Hex(3) HexNAc(3) Pent(1);MM=1227.438847", "Hex(5)HexNAc(2)Phos(1)": "NT=Hex(5)HexNAc(2)Phos(1);AC=1458;CF=H O(3) P Hex(5) HexNAc(2);MM=1296.389194", "dHex(1)Hex(4)HexNAc(2)Pent(1)": "NT=dHex(1)Hex(4)HexNAc(2)Pent(1);AC=1459;CF=dHex(1) Hex(4) HexNAc(2) Pent(1);MM=1332.470207", "Hex(7)HexNAc(1)": "NT=Hex(7)HexNAc(1);AC=1460;CF=Hex(7) HexNAc(1);MM=1337.449137", "Hex(4)HexNAc(2)NeuAc(1)": "NT=Hex(4)HexNAc(2)NeuAc(1);AC=1461;CF=Hex(4) HexNAc(2) NeuAc;MM=1345.465456", "dHex(1)Hex(5)HexNAc(2)": "NT=dHex(1)Hex(5)HexNAc(2);AC=1462;CF=dHex(1) Hex(5) HexNAc(2);MM=1362.480772", "dHex(1)Hex(3)HexNAc(3)Pent(1)": "NT=dHex(1)Hex(3)HexNAc(3)Pent(1);AC=1463;CF=dHex(1) Hex(3) HexNAc(3) Pent(1);MM=1373.496756", "Hex(3)HexNAc(4)Sulf(1)": "NT=Hex(3)HexNAc(4)Sulf(1);AC=1464;CF=O(3) S Hex(3) HexNAc(4);MM=1378.432776", "Hex(6)HexNAc(2)": "NT=Hex(6)HexNAc(2);AC=1465;CF=Hex(6) HexNAc(2);MM=1378.475686", "Hex(4)HexNAc(3)Pent(1)": "NT=Hex(4)HexNAc(3)Pent(1);AC=1466;CF=Hex(4) HexNAc(3) Pent(1);MM=1389.491671", "dHex(1)Hex(4)HexNAc(3)": "NT=dHex(1)Hex(4)HexNAc(3);AC=1467;CF=dHex(1) Hex(4) HexNAc(3);MM=1403.507321", "Hex(5)HexNAc(3)": "NT=Hex(5)HexNAc(3);AC=1468;CF=Hex(5) HexNAc(3);MM=1419.502235", "Hex(3)HexNAc(4)Pent(1)": "NT=Hex(3)HexNAc(4)Pent(1);AC=1469;CF=Hex(3) HexNAc(4) Pent(1);MM=1430.51822", "Hex(6)HexNAc(2)Phos(1)": "NT=Hex(6)HexNAc(2)Phos(1);AC=1470;CF=H O(3) P Hex(6) HexNAc(2);MM=1458.442017", "dHex(1)Hex(4)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(3)Sulf(1);AC=1471;CF=O(3) S dHex Hex(4) HexNAc(3);MM=1483.464135", "dHex(1)Hex(5)HexNAc(2)Pent(1)": "NT=dHex(1)Hex(5)HexNAc(2)Pent(1);AC=1472;CF=dHex(1) Hex(5) HexNAc(2) Pent(1);MM=1494.52303", "Hex(8)HexNAc(1)": "NT=Hex(8)HexNAc(1);AC=1473;CF=Hex(8) HexNAc(1);MM=1499.501961", "dHex(1)Hex(3)HexNAc(3)Pent(2)": "NT=dHex(1)Hex(3)HexNAc(3)Pent(2);AC=1474;CF=dHex(1) Hex(3) HexNAc(3) Pent(2);MM=1505.539015", "dHex(2)Hex(3)HexNAc(3)Pent(1)": "NT=dHex(2)Hex(3)HexNAc(3)Pent(1);AC=1475;CF=dHex(2) Hex(3) HexNAc(3) Pent(1);MM=1519.554665", "dHex(1)Hex(3)HexNAc(4)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(4)Sulf(1);AC=1476;CF=O(3) S dHex Hex(3) HexNAc(4);MM=1524.490684", "dHex(1)Hex(6)HexNAc(2)": "NT=dHex(1)Hex(6)HexNAc(2);AC=1477;CF=dHex(1) Hex(6) HexNAc(2);MM=1524.533595", "dHex(1)Hex(4)HexNAc(3)Pent(1)": "NT=dHex(1)Hex(4)HexNAc(3)Pent(1);AC=1478;CF=dHex(1) Hex(4) HexNAc(3) Pent(1);MM=1535.549579", "Hex(4)HexNAc(4)Sulf(1)": "NT=Hex(4)HexNAc(4)Sulf(1);AC=1479;CF=O(3) S Hex(4) HexNAc(4);MM=1540.485599", "Hex(7)HexNAc(2)": "NT=Hex(7)HexNAc(2);AC=1480;CF=Hex(7) HexNAc(2);MM=1540.52851", "dHex(2)Hex(4)HexNAc(3)": "NT=dHex(2)Hex(4)HexNAc(3);AC=1481;CF=dHex(2) Hex(4) HexNAc(3);MM=1549.56523", "Hex(5)HexNAc(3)Pent(1)": "NT=Hex(5)HexNAc(3)Pent(1);AC=1482;CF=Hex(5) HexNAc(3) Pent(1);MM=1551.544494", "Hex(4)HexNAc(3)NeuGc(1)": "NT=Hex(4)HexNAc(3)NeuGc(1);AC=1483;CF=Hex(4) HexNAc(3) NeuGc(1);MM=1564.539743", "dHex(1)Hex(5)HexNAc(3)": "NT=dHex(1)Hex(5)HexNAc(3);AC=1484;CF=dHex(1) Hex(5) HexNAc(3);MM=1565.560144", "dHex(1)Hex(3)HexNAc(4)Pent(1)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(1);AC=1485;CF=dHex(1) Hex(3) HexNAc(4) Pent(1);MM=1576.576129", "Hex(3)HexNAc(5)Sulf(1)": "NT=Hex(3)HexNAc(5)Sulf(1);AC=1486;CF=O(3) S Hex(3) HexNAc(5);MM=1581.512148", "Hex(6)HexNAc(3)": "NT=Hex(6)HexNAc(3);AC=1487;CF=Hex(6) HexNAc(3);MM=1581.555059", "Hex(3)HexNAc(4)NeuAc(1)": "NT=Hex(3)HexNAc(4)NeuAc(1);AC=1488;CF=Hex(3) HexNAc(4) NeuAc;MM=1589.571378", "Hex(4)HexNAc(4)Pent(1)": "NT=Hex(4)HexNAc(4)Pent(1);AC=1489;CF=Hex(4) HexNAc(4) Pent(1);MM=1592.571043", "Hex(7)HexNAc(2)Phos(1)": "NT=Hex(7)HexNAc(2)Phos(1);AC=1490;CF=H O(3) P Hex(7) HexNAc(2);MM=1620.494841", "Hex(4)HexNAc(4)Me(2)Pent(1)": "NT=Hex(4)HexNAc(4)Me(2)Pent(1);AC=1491;CF=Hex(4) HexNAc(4) Me(2) Pent(1);MM=1620.602343", "dHex(1)Hex(3)HexNAc(3)Pent(3)": "NT=dHex(1)Hex(3)HexNAc(3)Pent(3);AC=1492;CF=Pent(3) dHex Hex(3) HexNAc(3);MM=1637.581274", "dHex(1)Hex(5)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(5)HexNAc(3)Sulf(1);AC=1493;CF=O(3) S dHex Hex(5) HexNAc(3);MM=1645.516959", "dHex(2)Hex(3)HexNAc(3)Pent(2)": "NT=dHex(2)Hex(3)HexNAc(3)Pent(2);AC=1494;CF=dHex(2) Hex(3) HexNAc(3) Pent(2);MM=1651.596924", "Hex(6)HexNAc(3)Phos(1)": "NT=Hex(6)HexNAc(3)Phos(1);AC=1495;CF=H O(3) P Hex(6) HexNAc(3);MM=1661.52139", "Hex(4)HexNAc(5)": "NT=Hex(4)HexNAc(5);AC=1496;CF=Hex(4) HexNAc(5);MM=1663.608157", "dHex(3)Hex(3)HexNAc(3)Pent(1)": "NT=dHex(3)Hex(3)HexNAc(3)Pent(1);AC=1497;CF=dHex(3) Hex(3) HexNAc(3) Pent(1);MM=1665.612574", "dHex(2)Hex(4)HexNAc(3)Pent(1)": "NT=dHex(2)Hex(4)HexNAc(3)Pent(1);AC=1498;CF=dHex(2) Hex(4) HexNAc(3) Pent(1);MM=1681.607488", "dHex(1)Hex(4)HexNAc(4)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(4)Sulf(1);AC=1499;CF=O(3) S dHex Hex(4) HexNAc(4);MM=1686.543508", "dHex(1)Hex(7)HexNAc(2)": "NT=dHex(1)Hex(7)HexNAc(2);AC=1500;CF=dHex(1) Hex(7) HexNAc(2);MM=1686.586419", "dHex(1)Hex(4)HexNAc(3)NeuAc(1)": "NT=dHex(1)Hex(4)HexNAc(3)NeuAc(1);AC=1501;CF=dHex Hex(4) HexNAc(3) NeuAc;MM=1694.602737", "Hex(7)HexNAc(2)Phos(2)": "NT=Hex(7)HexNAc(2)Phos(2);AC=1502;CF=H(2) O(6) P(2) Hex(7) HexNAc(2);MM=1700.461172", "Hex(5)HexNAc(4)Sulf(1)": "NT=Hex(5)HexNAc(4)Sulf(1);AC=1503;CF=O(3) S Hex(5) HexNAc(4);MM=1702.538423", "Hex(8)HexNAc(2)": "NT=Hex(8)HexNAc(2);AC=1504;CF=Hex(8) HexNAc(2);MM=1702.581333", "dHex(1)Hex(3)HexNAc(4)Pent(2)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(2);AC=1505;CF=dHex(1) Hex(3) HexNAc(4) Pent(2);MM=1708.618387", "dHex(1)Hex(4)HexNAc(3)NeuGc(1)": "NT=dHex(1)Hex(4)HexNAc(3)NeuGc(1);AC=1506;CF=dHex Hex(4) HexNAc(3) NeuGc;MM=1710.597652", "dHex(2)Hex(3)HexNAc(4)Pent(1)": "NT=dHex(2)Hex(3)HexNAc(4)Pent(1);AC=1507;CF=dHex(2) Hex(3) HexNAc(4) Pent(1);MM=1722.634037", "dHex(1)Hex(3)HexNAc(5)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(5)Sulf(1);AC=1508;CF=O(3) S dHex Hex(3) HexNAc(5);MM=1727.570057", "dHex(1)Hex(6)HexNAc(3)": "NT=dHex(1)Hex(6)HexNAc(3);AC=1509;CF=dHex(1) Hex(6) HexNAc(3);MM=1727.612968", "dHex(1)Hex(3)HexNAc(4)NeuAc(1)": "NT=dHex(1)Hex(3)HexNAc(4)NeuAc(1);AC=1510;CF=dHex(1) Hex(3) HexNAc(4) NeuAc(1);MM=1735.629286", "dHex(3)Hex(3)HexNAc(4)": "NT=dHex(3)Hex(3)HexNAc(4);AC=1511;CF=dHex(3) Hex(3) HexNAc(4);MM=1736.649688", "dHex(1)Hex(4)HexNAc(4)Pent(1)": "NT=dHex(1)Hex(4)HexNAc(4)Pent(1);AC=1512;CF=dHex(1) Hex(4) HexNAc(4) Pent(1);MM=1738.628952", "Hex(4)HexNAc(5)Sulf(1)": "NT=Hex(4)HexNAc(5)Sulf(1);AC=1513;CF=O(3) S Hex(4) HexNAc(5);MM=1743.564972", "Hex(7)HexNAc(3)": "NT=Hex(7)HexNAc(3);AC=1514;CF=Hex(7) HexNAc(3);MM=1743.607882", "dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1);AC=1515;CF=O(3) S dHex Hex(4) HexNAc(3) NeuAc;MM=1774.559552", "Hex(5)HexNAc(4)Me(2)Pent(1)": "NT=Hex(5)HexNAc(4)Me(2)Pent(1);AC=1516;CF=Hex(5) HexNAc(4) Me(2) Pent(1);MM=1782.655167", "Hex(3)HexNAc(6)Sulf(1)": "NT=Hex(3)HexNAc(6)Sulf(1);AC=1517;CF=O(3) S Hex(3) HexNAc(6);MM=1784.591521", "dHex(1)Hex(6)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(6)HexNAc(3)Sulf(1);AC=1518;CF=O(3) S dHex Hex(6) HexNAc(3);MM=1807.569782", "dHex(1)Hex(4)HexNAc(5)": "NT=dHex(1)Hex(4)HexNAc(5);AC=1519;CF=dHex(1) Hex(4) HexNAc(5);MM=1809.666066", "dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1);AC=1520;CF=O(3) S dHex Hex(5) HexA HexNAc(3);MM=1821.549047", "Hex(7)HexNAc(3)Phos(1)": "NT=Hex(7)HexNAc(3)Phos(1);AC=1521;CF=H O(3) P Hex(7) HexNAc(3);MM=1823.574213", "Hex(6)HexNAc(4)Me(3)": "NT=Hex(6)HexNAc(4)Me(3);AC=1522;CF=Hex(6) HexNAc(4) Me(3);MM=1826.681382", "dHex(2)Hex(4)HexNAc(4)Sulf(1)": "NT=dHex(2)Hex(4)HexNAc(4)Sulf(1);AC=1523;CF=O(3) S dHex(2) Hex(4) HexNAc(4);MM=1832.601417", "Hex(4)HexNAc(3)NeuAc(2)": "NT=Hex(4)HexNAc(3)NeuAc(2);AC=1524;CF=Hex(4) HexNAc(3) NeuAc(2);MM=1839.640245", "dHex(1)Hex(3)HexNAc(4)Pent(3)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(3);AC=1525;CF=dHex(1) Hex(3) HexNAc(4) Pent(3);MM=1840.660646", "dHex(2)Hex(5)HexNAc(3)Pent(1)": "NT=dHex(2)Hex(5)HexNAc(3)Pent(1);AC=1526;CF=dHex(2) Hex(5) HexNAc(3) Pent(1);MM=1843.660312", "dHex(1)Hex(5)HexNAc(4)Sulf(1)": "NT=dHex(1)Hex(5)HexNAc(4)Sulf(1);AC=1527;CF=O(3) S dHex Hex(5) HexNAc(4);MM=1848.596331", "dHex(2)Hex(3)HexNAc(4)Pent(2)": "NT=dHex(2)Hex(3)HexNAc(4)Pent(2);AC=1528;CF=dHex(2) Hex(3) HexNAc(4) Pent(2);MM=1854.676296", "dHex(1)Hex(5)HexNAc(3)NeuAc(1)": "NT=dHex(1)Hex(5)HexNAc(3)NeuAc(1);AC=1529;CF=dHex(1) Hex(5) HexNAc(3) NeuAc(1);MM=1856.655561", "Hex(3)HexNAc(6)Sulf(2)": "NT=Hex(3)HexNAc(6)Sulf(2);AC=1530;CF=O(6) S(2) Hex(3) HexNAc(6);MM=1864.548335", "Hex(9)HexNAc(2)": "NT=Hex(9)HexNAc(2);AC=1531;CF=Hex(9) HexNAc(2);MM=1864.634157", "Hex(4)HexNAc(6)": "NT=Hex(4)HexNAc(6);AC=1532;CF=Hex(4) HexNAc(6);MM=1866.68753", "dHex(3)Hex(3)HexNAc(4)Pent(1)": "NT=dHex(3)Hex(3)HexNAc(4)Pent(1);AC=1533;CF=dHex(3) Hex(3) HexNAc(4) Pent(1);MM=1868.691946", "dHex(1)Hex(5)HexNAc(3)NeuGc(1)": "NT=dHex(1)Hex(5)HexNAc(3)NeuGc(1);AC=1534;CF=dHex Hex(5) HexNAc(3) NeuGc;MM=1872.650475", "dHex(2)Hex(4)HexNAc(4)Pent(1)": "NT=dHex(2)Hex(4)HexNAc(4)Pent(1);AC=1535;CF=dHex(2) Hex(4) HexNAc(4) Pent(1);MM=1884.686861", "dHex(1)Hex(4)HexNAc(5)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(5)Sulf(1);AC=1536;CF=O(3) S dHex Hex(4) HexNAc(5);MM=1889.62288", "dHex(1)Hex(7)HexNAc(3)": "NT=dHex(1)Hex(7)HexNAc(3);AC=1537;CF=dHex(1) Hex(7) HexNAc(3);MM=1889.665791", "dHex(1)Hex(5)HexNAc(4)Pent(1)": "NT=dHex(1)Hex(5)HexNAc(4)Pent(1);AC=1538;CF=dHex(1) Hex(5) HexNAc(4) Pent(1);MM=1900.681776", "dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2)": "NT=dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2);AC=1539;CF=O(6) S(2) dHex Hex(5) HexA HexNAc(3);MM=1901.505861", "Hex(3)HexNAc(7)": "NT=Hex(3)HexNAc(7);AC=1540;CF=Hex(3) HexNAc(7);MM=1907.714079", "dHex(2)Hex(5)HexNAc(4)": "NT=dHex(2)Hex(5)HexNAc(4);AC=1541;CF=dHex(2) Hex(5) HexNAc(4);MM=1914.697426", "dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1);AC=1542;CF=O(3) S dHex(2) Hex(4) HexNAc(3) NeuAc;MM=1920.617461", "dHex(1)Hex(5)HexNAc(4)Sulf(2)": "NT=dHex(1)Hex(5)HexNAc(4)Sulf(2);AC=1543;CF=O(6) S(2) dHex Hex(5) HexNAc(4);MM=1928.553146", "dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1)": "NT=dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1);AC=1544;CF=dHex(1) Hex(5) HexNAc(4) Me(2) Pent(1);MM=1928.713076", "Hex(5)HexNAc(4)NeuGc(1)": "NT=Hex(5)HexNAc(4)NeuGc(1);AC=1545;CF=Hex(5) HexNAc(4) NeuGc(1);MM=1929.671939", "dHex(1)Hex(3)HexNAc(6)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(6)Sulf(1);AC=1546;CF=O(3) S dHex Hex(3) HexNAc(6);MM=1930.64943", "dHex(1)Hex(6)HexNAc(4)": "NT=dHex(1)Hex(6)HexNAc(4);AC=1547;CF=dHex(1) Hex(6) HexNAc(4);MM=1930.69234", "dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1);AC=1548;CF=O(3) S dHex Hex(5) HexNAc(3) NeuAc;MM=1936.612375", "Hex(7)HexNAc(4)": "NT=Hex(7)HexNAc(4);AC=1549;CF=Hex(7) HexNAc(4);MM=1946.687255", "dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1)": "NT=dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1);AC=1550;CF=O(3) S dHex Hex(5) HexNAc(3) NeuGc;MM=1952.60729", "Hex(4)HexNAc(5)NeuAc(1)": "NT=Hex(4)HexNAc(5)NeuAc(1);AC=1551;CF=Hex(4) HexNAc(5) NeuAc(1);MM=1954.703574", "Hex(6)HexNAc(4)Me(3)Pent(1)": "NT=Hex(6)HexNAc(4)Me(3)Pent(1);AC=1552;CF=Hex(6) HexNAc(4) Me(3) Pent(1);MM=1958.72364", "dHex(1)Hex(7)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(7)HexNAc(3)Sulf(1);AC=1553;CF=O(3) S dHex Hex(7) HexNAc(3);MM=1969.622606", "dHex(1)Hex(7)HexNAc(3)Phos(1)": "NT=dHex(1)Hex(7)HexNAc(3)Phos(1);AC=1554;CF=H O(3) P dHex Hex(7) HexNAc(3);MM=1969.632122", "dHex(1)Hex(5)HexNAc(5)": "NT=dHex(1)Hex(5)HexNAc(5);AC=1555;CF=dHex(1) Hex(5) HexNAc(5);MM=1971.718889", "dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1);AC=1556;CF=O(3) S dHex Hex(4) HexNAc(4) NeuAc;MM=1977.638925", "dHex(3)Hex(4)HexNAc(4)Sulf(1)": "NT=dHex(3)Hex(4)HexNAc(4)Sulf(1);AC=1557;CF=O(3) S dHex(3) Hex(4) HexNAc(4);MM=1978.659326", "Hex(3)HexNAc(7)Sulf(1)": "NT=Hex(3)HexNAc(7)Sulf(1);AC=1558;CF=O(3) S Hex(3) HexNAc(7);MM=1987.670893", "Hex(6)HexNAc(5)": "NT=Hex(6)HexNAc(5);AC=1559;CF=Hex(6) HexNAc(5);MM=1987.713804", "Hex(5)HexNAc(4)NeuAc(1)Sulf(1)": "NT=Hex(5)HexNAc(4)NeuAc(1)Sulf(1);AC=1560;CF=O(3) S Hex(5) HexNAc(4) NeuAc;MM=1993.633839", "Hex(3)HexNAc(6)NeuAc(1)": "NT=Hex(3)HexNAc(6)NeuAc(1);AC=1561;CF=Hex(3) HexNAc(6) NeuAc(1);MM=1995.730123", "dHex(2)Hex(3)HexNAc(6)": "NT=dHex(2)Hex(3)HexNAc(6);AC=1562;CF=dHex(2) Hex(3) HexNAc(6);MM=1996.750524", "Hex(1)HexNAc(1)NeuGc(1)": "NT=Hex(1)HexNAc(1)NeuGc(1);AC=1563;CF=Hex(1) HexNAc(1) NeuGc(1);MM=672.222527", "dHex(1)Hex(2)HexNAc(1)": "NT=dHex(1)Hex(2)HexNAc(1);AC=1564;CF=dHex(1) Hex(2) HexNAc(1);MM=673.242928", "HexNAc(3)Sulf(1)": "NT=HexNAc(3)Sulf(1);AC=1565;CF=O(3) S HexNAc(3);MM=689.194932", "Hex(3)HexNAc(1)": "NT=Hex(3)HexNAc(1);AC=1566;CF=Hex(3) HexNAc;MM=689.237843", "Hex(1)HexNAc(1)Kdn(1)Sulf(1)": "NT=Hex(1)HexNAc(1)Kdn(1)Sulf(1);AC=1567;CF=O(3) S Hex HexNAc Kdn;MM=695.157878", "HexNAc(2)NeuAc(1)": "NT=HexNAc(2)NeuAc(1);AC=1568;CF=HexNAc(2) NeuAc(1);MM=697.254162", "HexNAc(1)Kdn(2)": "NT=HexNAc(1)Kdn(2);AC=1570;CF=HexNAc Kdn(2);MM=703.217108", "Hex(3)HexNAc(1)Me(1)": "NT=Hex(3)HexNAc(1)Me(1);AC=1571;CF=Hex(3) HexNAc(1) Me(1);MM=703.253493", "Hex(2)HexA(1)Pent(1)Sulf(1)": "NT=Hex(2)HexA(1)Pent(1)Sulf(1);AC=1572;CF=O(3) S Pent Hex(2) HexA;MM=712.136808", "HexNAc(2)NeuGc(1)": "NT=HexNAc(2)NeuGc(1);AC=1573;CF=HexNAc(2) NeuGc(1);MM=713.249076", "Hex(4)Phos(1)": "NT=Hex(4)Phos(1);AC=1575;CF=H O(3) P Hex(4);MM=728.177625", "Hex(1)HexNAc(1)NeuAc(1)Sulf(1)": "NT=Hex(1)HexNAc(1)NeuAc(1)Sulf(1);AC=1577;CF=O(3) S Hex HexNAc NeuAc;MM=736.184427", "Hex(1)HexA(1)HexNAc(2)": "NT=Hex(1)HexA(1)HexNAc(2);AC=1578;CF=Hex(1) HexA(1) HexNAc(2);MM=744.243657", "dHex(1)Hex(2)HexNAc(1)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(1)Sulf(1);AC=1579;CF=O(3) S dHex Hex(2) HexNAc;MM=753.199743", "dHex(1)HexNAc(3)": "NT=dHex(1)HexNAc(3);AC=1580;CF=dHex(1) HexNAc(3);MM=755.296027", "dHex(1)Hex(1)HexNAc(1)Kdn(1)": "NT=dHex(1)Hex(1)HexNAc(1)Kdn(1);AC=1581;CF=dHex Hex HexNAc Kdn;MM=761.258973", "Hex(1)HexNAc(3)": "NT=Hex(1)HexNAc(3);AC=1582;CF=Hex(1) HexNAc(3);MM=771.290941", "HexNAc(2)NeuAc(1)Sulf(1)": "NT=HexNAc(2)NeuAc(1)Sulf(1);AC=1583;CF=O(3) S HexNAc(2) NeuAc;MM=777.210976", "dHex(2)Hex(3)": "NT=dHex(2)Hex(3);AC=1584;CF=dHex(2) Hex(3);MM=778.274288", "Hex(2)HexA(1)HexNAc(1)Sulf(1)": "NT=Hex(2)HexA(1)HexNAc(1)Sulf(1);AC=1585;CF=O(3) S Hex(2) HexA HexNAc;MM=783.173922", "dHex(2)Hex(2)HexA(1)": "NT=dHex(2)Hex(2)HexA(1);AC=1586;CF=dHex(2) Hex(2) HexA(1);MM=792.253553", "dHex(1)Hex(1)HexNAc(2)Sulf(1)": "NT=dHex(1)Hex(1)HexNAc(2)Sulf(1);AC=1587;CF=O(3) S dHex Hex HexNAc(2);MM=794.226292", "dHex(1)Hex(1)HexNAc(1)NeuAc(1)": "NT=dHex(1)Hex(1)HexNAc(1)NeuAc(1);AC=1588;CF=dHex(1) Hex(1) HexNAc(1) NeuAc(1);MM=802.285522", "Hex(2)HexNAc(2)Sulf(1)": "NT=Hex(2)HexNAc(2)Sulf(1);AC=1589;CF=O(3) S Hex(2) HexNAc(2);MM=810.221207", "Hex(5)": "NT=Hex(5);AC=1590;CF=Hex(5);MM=810.264117", "HexNAc(4)": "NT=HexNAc(4);AC=1591;CF=HexNAc(4);MM=812.31749", "HexNAc(1)NeuGc(2)": "NT=HexNAc(1)NeuGc(2);AC=1592;CF=HexNAc(1) NeuGc(2);MM=817.260035", "dHex(1)Hex(1)HexNAc(1)NeuGc(1)": "NT=dHex(1)Hex(1)HexNAc(1)NeuGc(1);AC=1593;CF=dHex Hex HexNAc NeuGc;MM=818.280436", "dHex(2)Hex(2)HexNAc(1)": "NT=dHex(2)Hex(2)HexNAc(1);AC=1594;CF=dHex(2) Hex(2) HexNAc(1);MM=819.300837", "Hex(2)HexNAc(1)NeuGc(1)": "NT=Hex(2)HexNAc(1)NeuGc(1);AC=1595;CF=Hex(2) HexNAc(1) NeuGc(1);MM=834.275351", "dHex(1)Hex(3)HexNAc(1)": "NT=dHex(1)Hex(3)HexNAc(1);AC=1596;CF=dHex(1) Hex(3) HexNAc(1);MM=835.295752", "dHex(1)Hex(2)HexA(1)HexNAc(1)": "NT=dHex(1)Hex(2)HexA(1)HexNAc(1);AC=1597;CF=dHex(1) Hex(2) HexA(1) HexNAc(1);MM=849.275017", "Hex(1)HexNAc(3)Sulf(1)": "NT=Hex(1)HexNAc(3)Sulf(1);AC=1598;CF=O(3) S Hex HexNAc(3);MM=851.247756", "Hex(4)HexNAc(1)": "NT=Hex(4)HexNAc(1);AC=1599;CF=Hex(4) HexNAc;MM=851.290667", "Hex(1)HexNAc(2)NeuAc(1)": "NT=Hex(1)HexNAc(2)NeuAc(1);AC=1600;CF=Hex(1) HexNAc(2) NeuAc(1);MM=859.306985", "Hex(1)HexNAc(2)NeuGc(1)": "NT=Hex(1)HexNAc(2)NeuGc(1);AC=1602;CF=Hex(1) HexNAc(2) NeuGc(1);MM=875.3019", "Hex(5)Phos(1)": "NT=Hex(5)Phos(1);AC=1604;CF=H O(3) P Hex(5);MM=890.230448", "dHex(2)Hex(1)HexNAc(1)Kdn(1)": "NT=dHex(2)Hex(1)HexNAc(1)Kdn(1);AC=1606;CF=dHex(2) Hex HexNAc Kdn;MM=907.316881", "dHex(1)Hex(3)HexNAc(1)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(1)Sulf(1);AC=1607;CF=O(3) S dHex Hex(3) HexNAc;MM=915.252567", "dHex(1)Hex(1)HexNAc(3)": "NT=dHex(1)Hex(1)HexNAc(3);AC=1608;CF=dHex(1) Hex(1) HexNAc(3);MM=917.34885", "dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1)": "NT=dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1);AC=1609;CF=O(3) S dHex Hex(2) HexA HexNAc;MM=929.231831", "Hex(2)HexNAc(3)": "NT=Hex(2)HexNAc(3);AC=1610;CF=Hex(2) HexNAc(3);MM=933.343765", "Hex(1)HexNAc(2)NeuAc(1)Sulf(1)": "NT=Hex(1)HexNAc(2)NeuAc(1)Sulf(1);AC=1611;CF=O(3) S Hex HexNAc(2) NeuAc;MM=939.2638", "dHex(2)Hex(4)": "NT=dHex(2)Hex(4);AC=1612;CF=dHex(2) Hex(4);MM=940.327112", "dHex(2)HexNAc(2)Kdn(1)": "NT=dHex(2)HexNAc(2)Kdn(1);AC=1614;CF=dHex(2) HexNAc(2) Kdn;MM=948.34343", "dHex(1)Hex(2)HexNAc(2)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(2)Sulf(1);AC=1615;CF=O(3) S dHex Hex(2) HexNAc(2);MM=956.279116", "dHex(1)HexNAc(4)": "NT=dHex(1)HexNAc(4);AC=1616;CF=dHex(1) HexNAc(4);MM=958.375399", "Hex(1)HexNAc(1)NeuAc(1)NeuGc(1)": "NT=Hex(1)HexNAc(1)NeuAc(1)NeuGc(1);AC=1617;CF=Hex(1) HexNAc(1) NeuAc(1) NeuGc(1);MM=963.317944", "dHex(1)Hex(1)HexNAc(2)Kdn(1)": "NT=dHex(1)Hex(1)HexNAc(2)Kdn(1);AC=1618;CF=dHex Hex HexNAc(2) Kdn;MM=964.338345", "Hex(1)HexNAc(1)NeuGc(2)": "NT=Hex(1)HexNAc(1)NeuGc(2);AC=1619;CF=Hex(1) HexNAc(1) NeuGc(2);MM=979.312859", "Hex(1)HexNAc(1)NeuAc(2)Ac(1)": "NT=Hex(1)HexNAc(1)NeuAc(2)Ac(1);AC=1620;CF=Ac Hex HexNAc NeuAc(2);MM=989.333594", "dHex(2)Hex(2)HexA(1)HexNAc(1)": "NT=dHex(2)Hex(2)HexA(1)HexNAc(1);AC=1621;CF=dHex(2) Hex(2) HexA(1) HexNAc(1);MM=995.332925", "dHex(1)Hex(1)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(1)HexNAc(3)Sulf(1);AC=1622;CF=O(3) S dHex Hex HexNAc(3);MM=997.305665", "Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1)": "NT=Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1);AC=1623;CF=O(3) S Pent Hex(2) HexA NeuAc;MM=1003.232225", "dHex(1)Hex(1)HexNAc(2)NeuAc(1)": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(1);AC=1624;CF=dHex(1) Hex(1) HexNAc(2) NeuAc(1);MM=1005.364894", "dHex(1)Hex(3)HexA(1)HexNAc(1)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(1);AC=1625;CF=dHex(1) Hex(3) HexA(1) HexNAc(1);MM=1011.32784", "Hex(2)HexNAc(3)Sulf(1)": "NT=Hex(2)HexNAc(3)Sulf(1);AC=1626;CF=O(3) S Hex(2) HexNAc(3);MM=1013.300579", "Hex(5)HexNAc(1)": "NT=Hex(5)HexNAc(1);AC=1627;CF=Hex(5) HexNAc;MM=1013.34349", "HexNAc(5)": "NT=HexNAc(5);AC=1628;CF=HexNAc(5);MM=1015.396863", "Hex(1)HexNAc(1)NeuAc(2)Ac(2)": "NT=Hex(1)HexNAc(1)NeuAc(2)Ac(2);AC=1630;CF=Ac(2) Hex HexNAc NeuAc(2);MM=1031.344159", "Hex(2)HexNAc(2)NeuGc(1)": "NT=Hex(2)HexNAc(2)NeuGc(1);AC=1631;CF=Hex(2) HexNAc(2) NeuGc(1);MM=1037.354723", "Hex(5)Phos(3)": "NT=Hex(5)Phos(3);AC=1632;CF=H(3) O(9) P(3) Hex(5);MM=1050.16311", "Hex(6)Phos(1)": "NT=Hex(6)Phos(1);AC=1633;CF=H O(3) P Hex(6);MM=1052.283272", "dHex(1)Hex(2)HexA(1)HexNAc(2)": "NT=dHex(1)Hex(2)HexA(1)HexNAc(2);AC=1634;CF=dHex(1) Hex(2) HexA(1) HexNAc(2);MM=1052.354389", "dHex(2)Hex(3)HexNAc(1)Sulf(1)": "NT=dHex(2)Hex(3)HexNAc(1)Sulf(1);AC=1635;CF=O(3) S dHex(2) Hex(3) HexNAc;MM=1061.310475", "Hex(1)HexNAc(3)NeuAc(1)": "NT=Hex(1)HexNAc(3)NeuAc(1);AC=1636;CF=Hex(1) HexNAc(3) NeuAc(1);MM=1062.386358", "dHex(2)Hex(1)HexNAc(3)": "NT=dHex(2)Hex(1)HexNAc(3);AC=1637;CF=dHex(2) Hex(1) HexNAc(3);MM=1063.406759", "Hex(1)HexNAc(3)NeuGc(1)": "NT=Hex(1)HexNAc(3)NeuGc(1);AC=1638;CF=Hex(1) HexNAc(3) NeuGc(1);MM=1078.381273", "dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1);AC=1639;CF=O(3) S dHex Hex HexNAc(2) NeuAc;MM=1085.321709", "dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1);AC=1640;CF=O(3) S dHex Hex(3) HexA HexNAc;MM=1091.284655", "dHex(1)Hex(1)HexA(1)HexNAc(3)": "NT=dHex(1)Hex(1)HexA(1)HexNAc(3);AC=1641;CF=dHex(1) Hex(1) HexA(1) HexNAc(3);MM=1093.380938", "Hex(2)HexNAc(2)NeuAc(1)Sulf(1)": "NT=Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1642;CF=O(3) S Hex(2) HexNAc(2) NeuAc;MM=1101.316623", "dHex(2)Hex(2)HexNAc(2)Sulf(1)": "NT=dHex(2)Hex(2)HexNAc(2)Sulf(1);AC=1643;CF=O(3) S dHex(2) Hex(2) HexNAc(2);MM=1102.337025", "dHex(2)Hex(1)HexNAc(2)Kdn(1)": "NT=dHex(2)Hex(1)HexNAc(2)Kdn(1);AC=1644;CF=dHex(2) Hex HexNAc(2) Kdn;MM=1110.396254", "dHex(1)Hex(1)HexNAc(4)": "NT=dHex(1)Hex(1)HexNAc(4);AC=1645;CF=dHex(1) Hex(1) HexNAc(4);MM=1120.428223", "Hex(2)HexNAc(4)": "NT=Hex(2)HexNAc(4);AC=1646;CF=Hex(2) HexNAc(4);MM=1136.423137", "Hex(2)HexNAc(1)NeuGc(2)": "NT=Hex(2)HexNAc(1)NeuGc(2);AC=1647;CF=Hex(2) HexNAc(1) NeuGc(2);MM=1141.365682", "dHex(2)Hex(4)HexNAc(1)": "NT=dHex(2)Hex(4)HexNAc(1);AC=1648;CF=dHex(2) Hex(4) HexNAc(1);MM=1143.406484", "Hex(1)HexNAc(2)NeuAc(2)": "NT=Hex(1)HexNAc(2)NeuAc(2);AC=1649;CF=Hex(1) HexNAc(2) NeuAc(2);MM=1150.402402", "dHex(2)Hex(1)HexNAc(2)NeuAc(1)": "NT=dHex(2)Hex(1)HexNAc(2)NeuAc(1);AC=1650;CF=dHex(2) Hex(1) HexNAc(2) NeuAc(1);MM=1151.422803", "dHex(1)Hex(2)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(3)Sulf(1);AC=1651;CF=O(3) S dHex Hex(2) HexNAc(3);MM=1159.358488", "dHex(1)HexNAc(5)": "NT=dHex(1)HexNAc(5);AC=1652;CF=dHex(1) HexNAc(5);MM=1161.454772", "dHex(2)Hex(1)HexNAc(2)NeuGc(1)": "NT=dHex(2)Hex(1)HexNAc(2)NeuGc(1);AC=1653;CF=dHex(2) Hex HexNAc(2) NeuGc;MM=1167.417718", "dHex(3)Hex(2)HexNAc(2)": "NT=dHex(3)Hex(2)HexNAc(2);AC=1654;CF=dHex(3) Hex(2) HexNAc(2);MM=1168.438119", "Hex(3)HexNAc(3)Sulf(1)": "NT=Hex(3)HexNAc(3)Sulf(1);AC=1655;CF=O(3) S Hex(3) HexNAc(3);MM=1175.353403", "dHex(2)Hex(2)HexNAc(2)Sulf(2)": "NT=dHex(2)Hex(2)HexNAc(2)Sulf(2);AC=1656;CF=O(6) S(2) dHex(2) Hex(2) HexNAc(2);MM=1182.293839", "dHex(1)Hex(2)HexNAc(2)NeuGc(1)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(1);AC=1657;CF=dHex Hex(2) HexNAc(2) NeuGc;MM=1183.412632", "dHex(1)Hex(1)HexNAc(3)NeuAc(1)": "NT=dHex(1)Hex(1)HexNAc(3)NeuAc(1);AC=1658;CF=dHex Hex HexNAc(3) NeuAc;MM=1208.444267", "Hex(6)Phos(3)": "NT=Hex(6)Phos(3);AC=1659;CF=H(3) O(9) P(3) Hex(6);MM=1212.215934", "dHex(1)Hex(3)HexA(1)HexNAc(2)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(2);AC=1660;CF=dHex(1) Hex(3) HexA(1) HexNAc(2);MM=1214.407213", "dHex(1)Hex(1)HexNAc(3)NeuGc(1)": "NT=dHex(1)Hex(1)HexNAc(3)NeuGc(1);AC=1661;CF=dHex Hex HexNAc(3) NeuGc;MM=1224.439181", "Hex(1)HexNAc(2)NeuAc(2)Sulf(1)": "NT=Hex(1)HexNAc(2)NeuAc(2)Sulf(1);AC=1662;CF=O(3) S Hex HexNAc(2) NeuAc(2);MM=1230.359217", "dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1)": "NT=dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1);AC=1663;CF=O(3) S dHex(2) Hex(3) HexA HexNAc;MM=1237.342563", "Hex(1)HexNAc(1)NeuAc(3)": "NT=Hex(1)HexNAc(1)NeuAc(3);AC=1664;CF=Hex(1) HexNAc(1) NeuAc(3);MM=1238.418446", "Hex(2)HexNAc(3)NeuGc(1)": "NT=Hex(2)HexNAc(3)NeuGc(1);AC=1665;CF=Hex(2) HexNAc(3) NeuGc(1);MM=1240.434096", "dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1666;CF=O(3) S dHex Hex(2) HexNAc(2) NeuAc;MM=1247.374532", "dHex(3)Hex(1)HexNAc(2)Kdn(1)": "NT=dHex(3)Hex(1)HexNAc(2)Kdn(1);AC=1667;CF=dHex(3) Hex HexNAc(2) Kdn;MM=1256.454163", "dHex(2)Hex(3)HexNAc(2)Sulf(1)": "NT=dHex(2)Hex(3)HexNAc(2)Sulf(1);AC=1668;CF=O(3) S dHex(2) Hex(3) HexNAc(2);MM=1264.389848", "dHex(2)Hex(2)HexNAc(2)Kdn(1)": "NT=dHex(2)Hex(2)HexNAc(2)Kdn(1);AC=1669;CF=dHex(2) Hex(2) HexNAc(2) Kdn;MM=1272.449077", "dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1)": "NT=dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1);AC=1670;CF=O(3) S dHex(2) Hex(2) HexA HexNAc(2);MM=1278.369113", "dHex(1)Hex(2)HexNAc(4)": "NT=dHex(1)Hex(2)HexNAc(4);AC=1671;CF=dHex Hex(2) HexNAc(4);MM=1282.481046", "Hex(1)HexNAc(1)NeuGc(3)": "NT=Hex(1)HexNAc(1)NeuGc(3);AC=1672;CF=Hex(1) HexNAc(1) NeuGc(3);MM=1286.40319", "dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1);AC=1673;CF=O(3) S dHex Hex HexNAc(3) NeuAc;MM=1288.401081", "dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1);AC=1674;CF=O(3) S dHex Hex(3) HexA HexNAc(2);MM=1294.364027", "dHex(1)Hex(1)HexNAc(2)NeuAc(2)": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(2);AC=1675;CF=dHex(1) Hex(1) HexNAc(2) NeuAc(2);MM=1296.460311", "dHex(3)HexNAc(3)Kdn(1)": "NT=dHex(3)HexNAc(3)Kdn(1);AC=1676;CF=dHex(3) HexNAc(3) Kdn;MM=1297.480712", "Hex(2)HexNAc(3)NeuAc(1)Sulf(1)": "NT=Hex(2)HexNAc(3)NeuAc(1)Sulf(1);AC=1678;CF=O(3) S Hex(2) HexNAc(3) NeuAc;MM=1304.395996", "dHex(2)Hex(2)HexNAc(3)Sulf(1)": "NT=dHex(2)Hex(2)HexNAc(3)Sulf(1);AC=1679;CF=O(3) S dHex(2) Hex(2) HexNAc(3);MM=1305.416397", "dHex(2)HexNAc(5)": "NT=dHex(2)HexNAc(5);AC=1680;CF=dHex(2) HexNAc(5);MM=1307.512681", "Hex(2)HexNAc(2)NeuAc(2)": "NT=Hex(2)HexNAc(2)NeuAc(2);AC=1681;CF=Hex(2) HexNAc(2) NeuAc(2);MM=1312.455225", "dHex(2)Hex(2)HexNAc(2)NeuAc(1)": "NT=dHex(2)Hex(2)HexNAc(2)NeuAc(1);AC=1682;CF=dHex(2) Hex(2) HexNAc(2) NeuAc;MM=1313.475627", "dHex(1)Hex(3)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(3)Sulf(1);AC=1683;CF=O(3) S dHex Hex(3) HexNAc(3);MM=1321.411312", "dHex(2)Hex(2)HexNAc(2)NeuGc(1)": "NT=dHex(2)Hex(2)HexNAc(2)NeuGc(1);AC=1684;CF=dHex(2) Hex(2) HexNAc(2) NeuGc;MM=1329.470541", "Hex(2)HexNAc(5)": "NT=Hex(2)HexNAc(5);AC=1685;CF=Hex(2) HexNAc(5);MM=1339.50251", "dHex(1)Hex(3)HexNAc(2)NeuGc(1)": "NT=dHex(1)Hex(3)HexNAc(2)NeuGc(1);AC=1686;CF=dHex(1) Hex(3) HexNAc(2) NeuGc(1);MM=1345.465456", "Hex(1)HexNAc(3)NeuAc(2)": "NT=Hex(1)HexNAc(3)NeuAc(2);AC=1687;CF=Hex(1) HexNAc(3) NeuAc(2);MM=1353.481775", "dHex(1)Hex(2)HexNAc(3)NeuAc(1)": "NT=dHex(1)Hex(2)HexNAc(3)NeuAc(1);AC=1688;CF=dHex(1) Hex(2) HexNAc(3) NeuAc(1);MM=1370.49709", "dHex(3)Hex(2)HexNAc(3)": "NT=dHex(3)Hex(2)HexNAc(3);AC=1689;CF=dHex(3) Hex(2) HexNAc(3);MM=1371.517491", "Hex(7)Phos(3)": "NT=Hex(7)Phos(3);AC=1690;CF=H(3) O(9) P(3) Hex(7);MM=1374.268757", "dHex(1)Hex(4)HexA(1)HexNAc(2)": "NT=dHex(1)Hex(4)HexA(1)HexNAc(2);AC=1691;CF=dHex(1) Hex(4) HexA(1) HexNAc(2);MM=1376.460036", "Hex(3)HexNAc(3)NeuAc(1)": "NT=Hex(3)HexNAc(3)NeuAc(1);AC=1692;CF=Hex(3) HexNAc(3) NeuAc;MM=1386.492005", "dHex(1)Hex(3)HexA(2)HexNAc(2)": "NT=dHex(1)Hex(3)HexA(2)HexNAc(2);AC=1693;CF=dHex(1) Hex(3) HexA(2) HexNAc(2);MM=1390.439301", "Hex(2)HexNAc(2)NeuAc(2)Sulf(1)": "NT=Hex(2)HexNAc(2)NeuAc(2)Sulf(1);AC=1694;CF=O(3) S Hex(2) HexNAc(2) NeuAc(2);MM=1392.41204", "dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1)": "NT=dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1695;CF=O(3) S dHex(2) Hex(2) HexNAc(2) NeuAc;MM=1393.432441", "Hex(3)HexNAc(3)NeuGc(1)": "NT=Hex(3)HexNAc(3)NeuGc(1);AC=1696;CF=Hex(3) HexNAc(3) NeuGc(1);MM=1402.48692", "dHex(4)Hex(1)HexNAc(2)Kdn(1)": "NT=dHex(4)Hex(1)HexNAc(2)Kdn(1);AC=1697;CF=dHex(4) Hex HexNAc(2) Kdn;MM=1402.512072", "dHex(3)Hex(2)HexNAc(2)Kdn(1)": "NT=dHex(3)Hex(2)HexNAc(2)Kdn(1);AC=1698;CF=dHex(3) Hex(2) HexNAc(2) Kdn;MM=1418.506986", "dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1)": "NT=dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1);AC=1699;CF=O(3) S dHex(3) Hex(2) HexA HexNAc(2);MM=1424.427021", "Hex(2)HexNAc(4)NeuAc(1)": "NT=Hex(2)HexNAc(4)NeuAc(1);AC=1700;CF=Hex(2) HexNAc(4) NeuAc(1);MM=1427.518554", "dHex(2)Hex(2)HexNAc(4)": "NT=dHex(2)Hex(2)HexNAc(4);AC=1701;CF=dHex(2) Hex(2) HexNAc(4);MM=1428.538955", "dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1)": "NT=dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1);AC=1702;CF=O(3) S dHex(2) Hex(3) HexA HexNAc(2);MM=1440.421936", "dHex(4)HexNAc(3)Kdn(1)": "NT=dHex(4)HexNAc(3)Kdn(1);AC=1703;CF=dHex(4) HexNAc(3) Kdn;MM=1443.538621", "Hex(2)HexNAc(1)NeuGc(3)": "NT=Hex(2)HexNAc(1)NeuGc(3);AC=1705;CF=Hex(2) HexNAc(1) NeuGc(3);MM=1448.456013", "dHex(4)Hex(1)HexNAc(1)Kdn(2)": "NT=dHex(4)Hex(1)HexNAc(1)Kdn(2);AC=1706;CF=dHex(4) Hex HexNAc Kdn(2);MM=1449.501567", "dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1);AC=1707;CF=O(3) S dHex Hex(2) HexNAc(3) NeuAc;MM=1450.453905", "dHex(1)Hex(2)HexNAc(2)NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(2);AC=1708;CF=dHex(1) Hex(2) HexNAc(2) NeuAc(2);MM=1458.513134", "dHex(3)Hex(1)HexNAc(3)Kdn(1)": "NT=dHex(3)Hex(1)HexNAc(3)Kdn(1);AC=1709;CF=dHex(3) Hex HexNAc(3) Kdn;MM=1459.533535", "Hex(3)HexNAc(3)NeuAc(1)Sulf(1)": "NT=Hex(3)HexNAc(3)NeuAc(1)Sulf(1);AC=1711;CF=O(3) S Hex(3) HexNAc(3) NeuAc;MM=1466.44882", "Hex(3)HexNAc(2)NeuAc(2)": "NT=Hex(3)HexNAc(2)NeuAc(2);AC=1712;CF=Hex(3) HexNAc(2) NeuAc(2);MM=1474.508049", "Hex(3)HexNAc(3)NeuGc(1)Sulf(1)": "NT=Hex(3)HexNAc(3)NeuGc(1)Sulf(1);AC=1713;CF=O(3) S Hex(3) HexNAc(3) NeuGc;MM=1482.443734", "dHex(1)Hex(2)HexNAc(2)NeuGc(2)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(2);AC=1714;CF=dHex(1) Hex(2) HexNAc(2) NeuGc(2);MM=1490.502964", "dHex(2)Hex(3)HexNAc(2)NeuGc(1)": "NT=dHex(2)Hex(3)HexNAc(2)NeuGc(1);AC=1715;CF=dHex(2) Hex(3) HexNAc(2) NeuGc;MM=1491.523365", "dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1);AC=1716;CF=O(3) S dHex Hex(3) HexA HexNAc(3);MM=1497.4434", "Hex(2)HexNAc(3)NeuAc(2)": "NT=Hex(2)HexNAc(3)NeuAc(2);AC=1717;CF=Hex(2) HexNAc(3) NeuAc(2);MM=1515.534598", "dHex(2)Hex(2)HexNAc(3)NeuAc(1)": "NT=dHex(2)Hex(2)HexNAc(3)NeuAc(1);AC=1718;CF=dHex(2) Hex(2) HexNAc(3) NeuAc(1);MM=1516.554999", "dHex(4)Hex(2)HexNAc(3)": "NT=dHex(4)Hex(2)HexNAc(3);AC=1719;CF=dHex(4) Hex(2) HexNAc(3);MM=1517.5754", "Hex(2)HexNAc(3)NeuAc(1)NeuGc(1)": "NT=Hex(2)HexNAc(3)NeuAc(1)NeuGc(1);AC=1720;CF=Hex(2) HexNAc(3) NeuAc(1) NeuGc(1);MM=1531.529513", "dHex(2)Hex(2)HexNAc(3)NeuGc(1)": "NT=dHex(2)Hex(2)HexNAc(3)NeuGc(1);AC=1721;CF=dHex(2) Hex(2) HexNAc(3) NeuGc;MM=1532.549914", "dHex(3)Hex(3)HexNAc(3)": "NT=dHex(3)Hex(3)HexNAc(3);AC=1722;CF=dHex(3) Hex(3) HexNAc(3);MM=1533.570315", "Hex(8)Phos(3)": "NT=Hex(8)Phos(3);AC=1723;CF=H(3) O(9) P(3) Hex(8);MM=1536.321581", "dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1);AC=1724;CF=O(3) S dHex Hex(2) HexNAc(2) NeuAc(2);MM=1538.469949", "Hex(2)HexNAc(3)NeuGc(2)": "NT=Hex(2)HexNAc(3)NeuGc(2);AC=1725;CF=Hex(2) HexNAc(3) NeuGc(2);MM=1547.524427", "dHex(4)Hex(2)HexNAc(2)Kdn(1)": "NT=dHex(4)Hex(2)HexNAc(2)Kdn(1);AC=1726;CF=dHex(4) Hex(2) HexNAc(2) Kdn;MM=1564.564895", "dHex(1)Hex(2)HexNAc(4)NeuAc(1)": "NT=dHex(1)Hex(2)HexNAc(4)NeuAc(1);AC=1727;CF=dHex(1) Hex(2) HexNAc(4) NeuAc(1);MM=1573.576463", "dHex(3)Hex(2)HexNAc(4)": "NT=dHex(3)Hex(2)HexNAc(4);AC=1728;CF=dHex(3) Hex(2) HexNAc(4);MM=1574.596864", "Hex(1)HexNAc(1)NeuGc(4)": "NT=Hex(1)HexNAc(1)NeuGc(4);AC=1729;CF=Hex(1) HexNAc(1) NeuGc(4);MM=1593.493521", "dHex(4)Hex(1)HexNAc(3)Kdn(1)": "NT=dHex(4)Hex(1)HexNAc(3)Kdn(1);AC=1730;CF=dHex(4) Hex HexNAc(3) Kdn;MM=1605.591444", "Hex(4)HexNAc(4)Sulf(2)": "NT=Hex(4)HexNAc(4)Sulf(2);AC=1732;CF=O(6) S(2) Hex(4) HexNAc(4);MM=1620.442414", "dHex(3)Hex(2)HexNAc(3)Kdn(1)": "NT=dHex(3)Hex(2)HexNAc(3)Kdn(1);AC=1733;CF=dHex(3) Hex(2) HexNAc(3) Kdn;MM=1621.586359", "dHex(2)Hex(2)HexNAc(5)": "NT=dHex(2)Hex(2)HexNAc(5);AC=1735;CF=dHex(2) Hex(2) HexNAc(5);MM=1631.618328", "dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1);AC=1736;CF=O(3) S dHex(2) Hex(3) HexA HexNAc(3);MM=1643.501309", "dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1);AC=1737;CF=O(3) S dHex Hex(4) HexA HexNAc(3);MM=1659.496223", "Hex(3)HexNAc(3)NeuAc(2)": "NT=Hex(3)HexNAc(3)NeuAc(2);AC=1738;CF=Hex(3) HexNAc(3) NeuAc(2);MM=1677.587422", "dHex(2)Hex(3)HexNAc(3)NeuAc(1)": "NT=dHex(2)Hex(3)HexNAc(3)NeuAc(1);AC=1739;CF=dHex(2) Hex(3) HexNAc(3) NeuAc;MM=1678.607823", "dHex(4)Hex(3)HexNAc(3)": "NT=dHex(4)Hex(3)HexNAc(3);AC=1740;CF=dHex(4) Hex(3) HexNAc(3);MM=1679.628224", "Hex(9)Phos(3)": "NT=Hex(9)Phos(3);AC=1742;CF=H(3) O(9) P(3) Hex(9);MM=1698.374404", "dHex(2)HexNAc(7)": "NT=dHex(2)HexNAc(7);AC=1743;CF=dHex(2) HexNAc(7);MM=1713.671426", "Hex(2)HexNAc(1)NeuGc(4)": "NT=Hex(2)HexNAc(1)NeuGc(4);AC=1744;CF=Hex(2) HexNAc(1) NeuGc(4);MM=1755.546345", "Hex(3)HexNAc(3)NeuAc(2)Sulf(1)": "NT=Hex(3)HexNAc(3)NeuAc(2)Sulf(1);AC=1745;CF=O(3) S Hex(3) HexNAc(3) NeuAc(2);MM=1757.544236", "dHex(2)Hex(3)HexNAc(5)": "NT=dHex(2)Hex(3)HexNAc(5);AC=1746;CF=dHex(2) Hex(3) HexNAc(5);MM=1793.671151", "dHex(1)Hex(2)HexNAc(2)NeuGc(3)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(3);AC=1747;CF=dHex(1) Hex(2) HexNAc(2) NeuGc(3);MM=1797.593295", "dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1);AC=1748;CF=O(3) S dHex(2) Hex(4) HexA HexNAc(3);MM=1805.554132", "Hex(2)HexNAc(3)NeuAc(3)": "NT=Hex(2)HexNAc(3)NeuAc(3);AC=1749;CF=Hex(2) HexNAc(3) NeuAc(3);MM=1806.630015", "dHex(1)Hex(3)HexNAc(3)NeuAc(2)": "NT=dHex(1)Hex(3)HexNAc(3)NeuAc(2);AC=1750;CF=dHex(1) Hex(3) HexNAc(3) NeuAc(2);MM=1823.64533", "dHex(3)Hex(3)HexNAc(3)NeuAc(1)": "NT=dHex(3)Hex(3)HexNAc(3)NeuAc(1);AC=1751;CF=dHex(3) Hex(3) HexNAc(3) NeuAc(1);MM=1824.665732", "Hex(2)HexNAc(3)NeuGc(3)": "NT=Hex(2)HexNAc(3)NeuGc(3);AC=1752;CF=Hex(2) HexNAc(3) NeuGc(3);MM=1854.614759", "Hex(10)Phos(3)": "NT=Hex(10)Phos(3);AC=1753;CF=H(3) O(9) P(3) Hex(10);MM=1860.427228", "dHex(1)Hex(2)HexNAc(4)NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(4)NeuAc(2);AC=1754;CF=dHex(1) Hex(2) HexNAc(4) NeuAc(2);MM=1864.67188", "Hex(1)HexNAc(1)NeuGc(5)": "NT=Hex(1)HexNAc(1)NeuGc(5);AC=1755;CF=Hex(1) HexNAc(1) NeuGc(5);MM=1900.583852", "Hex(4)HexNAc(4)NeuAc(1)Sulf(2)": "NT=Hex(4)HexNAc(4)NeuAc(1)Sulf(2);AC=1756;CF=O(6) S(2) Hex(4) HexNAc(4) NeuAc;MM=1911.53783", "Hex(4)HexNAc(4)NeuGc(1)Sulf(2)": "NT=Hex(4)HexNAc(4)NeuGc(1)Sulf(2);AC=1757;CF=O(6) S(2) Hex(4) HexNAc(4) NeuGc;MM=1927.532745", "dHex(2)Hex(3)HexNAc(3)NeuAc(2)": "NT=dHex(2)Hex(3)HexNAc(3)NeuAc(2);AC=1758;CF=dHex(2) Hex(3) HexNAc(3) NeuAc(2);MM=1969.703239", "Hex(4)HexNAc(4)NeuAc(1)Sulf(3)": "NT=Hex(4)HexNAc(4)NeuAc(1)Sulf(3);AC=1759;CF=O(9) S(3) Hex(4) HexNAc(4) NeuAc;MM=1991.494645", "dHex(2)Hex(2)HexNAc(2)": "NT=dHex(2)Hex(2)HexNAc(2);AC=1760;CF=dHex(2) Hex(2) HexNAc(2);MM=1022.38021", "dHex(1)Hex(3)HexNAc(2)": "NT=dHex(1)Hex(3)HexNAc(2);AC=1761;CF=dHex(1) Hex(3) HexNAc(2);MM=1038.375125", "dHex(1)Hex(2)HexNAc(3)": "NT=dHex(1)Hex(2)HexNAc(3);AC=1762;CF=dHex(1) Hex(2) HexNAc(3);MM=1079.401674", "Hex(3)HexNAc(3)": "NT=Hex(3)HexNAc(3);AC=1763;CF=Hex(3) HexNAc(3);MM=1095.396588", "dHex(1)Hex(3)HexNAc(2)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(2)Sulf(1);AC=1764;CF=O(3) S dHex Hex(3) HexNAc(2);MM=1118.331939", "dHex(2)Hex(3)HexNAc(2)": "NT=dHex(2)Hex(3)HexNAc(2);AC=1765;CF=dHex(2) Hex(3) HexNAc(2);MM=1184.433033", "dHex(1)Hex(4)HexNAc(2)": "NT=dHex(1)Hex(4)HexNAc(2);AC=1766;CF=dHex(1) Hex(4) HexNAc(2);MM=1200.427948", "dHex(2)Hex(2)HexNAc(3)": "NT=dHex(2)Hex(2)HexNAc(3);AC=1767;CF=dHex(2) Hex(2) HexNAc(3);MM=1225.459583", "dHex(1)Hex(3)HexNAc(3)": "NT=dHex(1)Hex(3)HexNAc(3);AC=1768;CF=dHex(1) Hex(3) HexNAc(3);MM=1241.454497", "Hex(4)HexNAc(3)": "NT=Hex(4)HexNAc(3);AC=1769;CF=Hex(4) HexNAc(3);MM=1257.449412", "dHex(2)Hex(4)HexNAc(2)": "NT=dHex(2)Hex(4)HexNAc(2);AC=1770;CF=dHex(2) Hex(4) HexNAc(2);MM=1346.485857", "dHex(2)Hex(3)HexNAc(3)": "NT=dHex(2)Hex(3)HexNAc(3);AC=1771;CF=dHex(2) Hex(3) HexNAc(3);MM=1387.512406", "Hex(3)HexNAc(5)": "NT=Hex(3)HexNAc(5);AC=1772;CF=Hex(3) HexNAc(5);MM=1501.555334", "Hex(4)HexNAc(3)NeuAc(1)": "NT=Hex(4)HexNAc(3)NeuAc(1);AC=1773;CF=Hex(4) HexNAc(3) NeuAc;MM=1548.544828", "dHex(2)Hex(3)HexNAc(4)": "NT=dHex(2)Hex(3)HexNAc(4);AC=1774;CF=dHex(2) Hex(3) HexNAc(4);MM=1590.591779", "dHex(1)Hex(3)HexNAc(5)": "NT=dHex(1)Hex(3)HexNAc(5);AC=1775;CF=dHex(1) Hex(3) HexNAc(5);MM=1647.613242", "Hex(3)HexNAc(6)": "NT=Hex(3)HexNAc(6);AC=1776;CF=Hex(3) HexNAc(6);MM=1704.634706", "Hex(4)HexNAc(4)NeuAc(1)": "NT=Hex(4)HexNAc(4)NeuAc(1);AC=1777;CF=Hex(4) HexNAc(4) NeuAc(1);MM=1751.624201", "dHex(2)Hex(4)HexNAc(4)": "NT=dHex(2)Hex(4)HexNAc(4);AC=1778;CF=dHex(2) Hex(4) HexNAc(4);MM=1752.644602", "Hex(6)HexNAc(4)": "NT=Hex(6)HexNAc(4);AC=1779;CF=Hex(6) HexNAc(4);MM=1784.634431", "Hex(5)HexNAc(5)": "NT=Hex(5)HexNAc(5);AC=1780;CF=Hex(5) HexNAc(5);MM=1825.660981", "dHex(1)Hex(3)HexNAc(6)": "NT=dHex(1)Hex(3)HexNAc(6);AC=1781;CF=dHex(1) Hex(3) HexNAc(6);MM=1850.692615", "dHex(1)Hex(4)HexNAc(4)NeuAc(1)": "NT=dHex(1)Hex(4)HexNAc(4)NeuAc(1);AC=1782;CF=dHex Hex(4) HexNAc(4) NeuAc;MM=1897.68211", "dHex(3)Hex(4)HexNAc(4)": "NT=dHex(3)Hex(4)HexNAc(4);AC=1783;CF=dHex(3) Hex(4) HexNAc(4);MM=1898.702511", "dHex(1)Hex(3)HexNAc(5)NeuAc(1)": "NT=dHex(1)Hex(3)HexNAc(5)NeuAc(1);AC=1784;CF=dHex(1) Hex(3) HexNAc(5) NeuAc(1);MM=1938.708659", "dHex(2)Hex(4)HexNAc(5)": "NT=dHex(2)Hex(4)HexNAc(5);AC=1785;CF=dHex(2) Hex(4) HexNAc(5);MM=1955.723975", "Hex(1)HexNAc(1)NeuAc(1)Ac(1)": "NT=Hex(1)HexNAc(1)NeuAc(1)Ac(1);AC=1786;CF=Ac Hex HexNAc NeuAc;MM=698.238177", "Label:13C(2)15N(2)": "NT=Label:13C(2)15N(2);AC=1787;CF=C(-2) 13C(2) N(-2) 15N(2);MM=4.00078", "Xlink:DSS[155]": "NT=Xlink:DSS[155];AC=1789;CF=H(13) C(8) N O(2);MM=155.094629", "NQIGG": "NT=NQIGG;AC=1799;CF=H(31) C(19) N(7) O(7);MM=469.228496", "Carboxyethylpyrrole": "NT=Carboxyethylpyrrole;AC=1800;CF=H(6) C(7) O(2);MM=122.036779", "Fluorescein-tyramine": "NT=Fluorescein-tyramine;AC=1801;CF=H(19) C(29) N O(7);MM=493.116152", "GEE": "NT=GEE;AC=1824;CF=H(6) C(4) O(2);MM=86.036779", "RNPXL": "NT=RNPXL;AC=1825;CF=H(13) C(9) N(2) O(9) P;MM=324.035867", "Glu->pyro-Glu+Methyl": "NT=Glu->pyro-Glu+Methyl;AC=1826;CF=C O(-1);MM=-3.994915", "Glu->pyro-Glu+Methyl:2H(2)13C(1)": "NT=Glu->pyro-Glu+Methyl:2H(2)13C(1);AC=1827;CF=H(-2) 2H(2) 13C O(-1);MM=-0.979006", "LRGG+methyl": "NT=LRGG+methyl;AC=1828;CF=H(31) C(17) N(7) O(4);MM=397.243753", "LRGG+dimethyl": "NT=LRGG+dimethyl;AC=1829;CF=H(33) C(18) N(7) O(4);MM=411.259403", "Biotin-tyramide": "NT=Biotin-tyramide;AC=1830;CF=H(23) C(18) N(3) O(3) S;MM=361.146012", "Tris": "NT=Tris;AC=1831;CF=H(10) C(4) N O(2);MM=104.071154", "IASD": "NT=IASD;AC=1832;CF=H(16) C(18) N(2) O(8) S(2);MM=452.034807", "NP40": "NT=NP40;AC=1833;CF=H(24) C(15) O;MM=220.182715", "Tween20": "NT=Tween20;AC=1834;CF=H(21) C(12);MM=165.164326", "Tween80": "NT=Tween80;AC=1835;CF=H(31) C(18) O;MM=263.237491", "Triton": "NT=Triton;AC=1836;CF=H(20) C(14);MM=188.156501", "Brij35": "NT=Brij35;AC=1837;CF=H(24) C(12);MM=168.187801", "Brij58": "NT=Brij58;AC=1838;CF=H(32) C(16);MM=224.250401", "betaFNA": "NT=betaFNA;AC=1839;CF=H(30) C(25) N(2) O(6);MM=454.210387", "dHex(1)Hex(7)HexNAc(4)": "NT=dHex(1)Hex(7)HexNAc(4);AC=1840;CF=dHex Hex(7) HexNAc(4);MM=2092.745164", "Biotin:Thermo-21328": "NT=Biotin:Thermo-21328;AC=1841;CF=H(23) C(15) N(3) O(3) S(3);MM=389.090154", "Xlink:DSSO": "NT=Xlink:DSSO;AC=1842;CF=H(6) C(6) O(3) S;MM=158.003765", "PhosphoCytidine": "NT=PhosphoCytidine;AC=1843;CF=H(12) C(9) N(3) O(7) P;MM=305.041287", "Xlink:EGS": "NT=Xlink:EGS;AC=1844;CF=H(10) C(10) O(6);MM=226.047738", "AzidoF": "NT=AzidoF;AC=1845;CF=H(-1) N(3);MM=41.001397", "Dimethylaminoethyl": "NT=Dimethylaminoethyl;AC=1846;CF=H(9) C(4) N;MM=71.073499", "Gluratylation": "NT=Gluratylation;AC=1848;CF=H(6) C(5) O(3);MM=114.031694", "hydroxyisobutyryl": "NT=hydroxyisobutyryl;AC=1849;CF=H(6) C(4) O(2);MM=86.036779", "MeMePhosphorothioate": "NT=MeMePhosphorothioate;AC=1868;CF=H(5) C(2) O P S;MM=107.979873", "Cation:Fe[III]": "NT=Cation:Fe[III];AC=1870;CF=H(-3) Fe;MM=52.911464", "DTT": "NT=DTT;AC=1871;CF=H(8) C(4) O(2) S(2);MM=151.996571", "DYn-2": "NT=DYn-2;AC=1872;CF=H(13) C(11) O;MM=161.09664", "MesitylOxide": "NT=MesitylOxide;AC=1873;CF=H(10) C(6) O;MM=98.073165", "methylol": "NT=methylol;AC=1875;CF=H(2) C O;MM=30.010565", "Xlink:DSS": "NT=Xlink:DSS;AC=1876;CF=H(10) C(8) O(2);MM=138.06808", "Xlink:DSS[259]": "NT=Xlink:DSS[259];AC=1877;CF=H(21) C(12) N O(5);MM=259.141973", "Xlink:DSSO[176]": "NT=Xlink:DSSO[176];AC=1878;CF=H(8) C(6) O(4) S;MM=176.01433", "Xlink:DSSO[175]": "NT=Xlink:DSSO[175];AC=1879;CF=H(9) C(6) N O(3) S;MM=175.030314", "Xlink:DSSO[279]": "NT=Xlink:DSSO[279];AC=1880;CF=H(17) C(10) N O(6) S;MM=279.077658", "Xlink:DSSO[54]": "NT=Xlink:DSSO[54];AC=1881;CF=H(2) C(3) O;MM=54.010565", "Xlink:DSSO[86]": "NT=Xlink:DSSO[86];AC=1882;CF=H(2) C(3) O S;MM=85.982635", "Xlink:DSSO[104]": "NT=Xlink:DSSO[104];AC=1883;CF=H(4) C(3) O(2) S;MM=103.9932", "Xlink:BuUrBu": "NT=Xlink:BuUrBu;AC=1884;CF=H(12) C(9) N(2) O(3);MM=196.084792", "Xlink:BuUrBu[111]": "NT=Xlink:BuUrBu[111];AC=1885;CF=H(5) C(5) N O(2);MM=111.032028", "Xlink:BuUrBu[85]": "NT=Xlink:BuUrBu[85];AC=1886;CF=H(7) C(4) N O;MM=85.052764", "Xlink:BuUrBu[213]": "NT=Xlink:BuUrBu[213];AC=1887;CF=H(15) C(9) N(3) O(3);MM=213.111341", "Xlink:BuUrBu[214]": "NT=Xlink:BuUrBu[214];AC=1888;CF=H(14) C(9) N(2) O(4);MM=214.095357", "Xlink:BuUrBu[317]": "NT=Xlink:BuUrBu[317];AC=1889;CF=H(23) C(13) N(3) O(6);MM=317.158686", "Xlink:DTBP": "NT=Xlink:DTBP;AC=1891;CF=H(8) C(6) N(2) S(2);MM=172.01289", "Xlink:DST": "NT=Xlink:DST;AC=1892;CF=H(2) C(4) O(4);MM=113.995309", "Xlink:DTSSP": "NT=Xlink:DTSSP;AC=1893;CF=H(6) C(6) O(2) S(2);MM=173.980921", "Xlink:SMCC": "NT=Xlink:SMCC;AC=1895;CF=H(13) C(12) N O(3);MM=219.089543", "Xlink:DSSO[158]": "NT=Xlink:DSSO[158];AC=1896;CF=H(6) C(6) O(3) S;MM=158.003765", "Xlink:EGS[226]": "NT=Xlink:EGS[226];AC=1897;CF=H(10) C(10) O(6);MM=226.047738", "Xlink:DSS[138]": "NT=Xlink:DSS[138];AC=1898;CF=H(10) C(8) O(2);MM=138.06808", "Xlink:BuUrBu[196]": "NT=Xlink:BuUrBu[196];AC=1899;CF=H(12) C(9) N(2) O(3);MM=196.084792", "Xlink:DTBP[172]": "NT=Xlink:DTBP[172];AC=1900;CF=H(8) C(6) N(2) S(2);MM=172.01289", "Xlink:DST[114]": "NT=Xlink:DST[114];AC=1901;CF=H(2) C(4) O(4);MM=113.995309", "Xlink:DTSSP[174]": "NT=Xlink:DTSSP[174];AC=1902;CF=H(6) C(6) O(2) S(2);MM=173.980921", "Xlink:SMCC[219]": "NT=Xlink:SMCC[219];AC=1903;CF=H(13) C(12) N O(3);MM=219.089543", "Xlink:BS2G[96]": "NT=Xlink:BS2G[96];AC=1905;CF=H(4) C(5) O(2);MM=96.021129", "Xlink:BS2G[113]": "NT=Xlink:BS2G[113];AC=1906;CF=H(7) C(5) N O(2);MM=113.047679", "Xlink:BS2G[114]": "NT=Xlink:BS2G[114];AC=1907;CF=H(6) C(5) O(3);MM=114.031694", "Xlink:BS2G[217]": "NT=Xlink:BS2G[217];AC=1908;CF=H(15) C(9) N O(5);MM=217.095023", "Xlink:BS2G": "NT=Xlink:BS2G;AC=1909;CF=H(4) C(5) O(2);MM=96.021129", "Cation:Al[III]": "NT=Cation:Al[III];AC=1910;CF=H(-3) Al;MM=23.958063", "Xlink:DMP[139]": "NT=Xlink:DMP[139];AC=1911;CF=H(13) C(7) N(3);MM=139.110947", "Xlink:DMP[122]": "NT=Xlink:DMP[122];AC=1912;CF=H(10) C(7) N(2);MM=122.084398", "glyoxalAGE": "NT=glyoxalAGE;AC=1913;CF=H(-2) C(2);MM=21.98435", "Met->AspSA": "NT=Met->AspSA;AC=1914;CF=H(-4) C(-1) O S(-1);MM=-32.008456", "Decarboxylation": "NT=Decarboxylation;AC=1915;CF=H(-2) C(-1) O(-1);MM=-30.010565", "Aspartylurea": "NT=Aspartylurea;AC=1916;CF=H(-2) C(-1) N(-2) O(2);MM=-10.031969", "Formylasparagine": "NT=Formylasparagine;AC=1917;CF=H(-1) C(-1) N(-1) O(2);MM=4.97893", "Carbonyl": "NT=Carbonyl;AC=1918;CF=H(-2) O;MM=13.979265", "AFB1_Dialdehyde": "NT=AFB1_Dialdehyde;AC=1920;CF=H(10) C(17) O(6);MM=310.047738", "Pro->HAVA": "NT=Pro->HAVA;AC=1922;CF=H(2) O;MM=18.010565", "Delta:H(-4)O(2)": "NT=Delta:H(-4)O(2);AC=1923;CF=H(-4) O(2);MM=27.958529", "Delta:H(-4)O(3)": "NT=Delta:H(-4)O(3);AC=1924;CF=H(-4) O(3);MM=43.953444", "Delta:O(4)": "NT=Delta:O(4);AC=1925;CF=O(4);MM=63.979659", "Delta:H(4)C(3)O(2)": "NT=Delta:H(4)C(3)O(2);AC=1926;CF=H(4) C(3) O(2);MM=72.021129", "Delta:H(4)C(5)O(1)": "NT=Delta:H(4)C(5)O(1);AC=1927;CF=H(4) C(5) O;MM=80.026215", "Delta:H(10)C(8)O(1)": "NT=Delta:H(10)C(8)O(1);AC=1928;CF=H(10) C(8) O;MM=122.073165", "Delta:H(6)C(7)O(4)": "NT=Delta:H(6)C(7)O(4);AC=1929;CF=H(6) C(7) O(4);MM=154.026609", "Pent(2)": "NT=Pent(2);AC=1930;CF=Pent(2);MM=264.084518", "Pent(1)HexNAc(1)": "NT=Pent(1)HexNAc(1);AC=1931;CF=Pent HexNAc;MM=335.121631", "Hex(2)Sulf(1)": "NT=Hex(2)Sulf(1);AC=1932;CF=O(3) S Hex(2);MM=404.062462", "Hex(1)Pent(2)Me(1)": "NT=Hex(1)Pent(2)Me(1);AC=1933;CF=Me Pent(2) Hex;MM=440.152991", "HexNAc(2)Sulf(1)": "NT=HexNAc(2)Sulf(1);AC=1934;CF=O(3) S HexNAc(2);MM=486.11556", "Hex(1)Pent(3)Me(1)": "NT=Hex(1)Pent(3)Me(1);AC=1935;CF=Me Pent(3) Hex;MM=572.19525", "Hex(2)Pent(2)": "NT=Hex(2)Pent(2);AC=1936;CF=Pent(2) Hex(2);MM=588.190165", "Hex(2)Pent(2)Me(1)": "NT=Hex(2)Pent(2)Me(1);AC=1937;CF=Me Pent(2) Hex(2);MM=602.205815", "Hex(4)HexA(1)": "NT=Hex(4)HexA(1);AC=1938;CF=Hex(4) HexA;MM=824.243382", "Hex(2)HexNAc(1)Pent(1)HexA(1)": "NT=Hex(2)HexNAc(1)Pent(1)HexA(1);AC=1939;CF=Pent Hex(2) HexA HexNAc;MM=835.259366", "Hex(3)HexNAc(1)HexA(1)": "NT=Hex(3)HexNAc(1)HexA(1);AC=1940;CF=Hex(3) HexA HexNAc;MM=865.269931", "Hex(1)HexNAc(2)dHex(2)Sulf(1)": "NT=Hex(1)HexNAc(2)dHex(2)Sulf(1);AC=1941;CF=O(3) S dHex(2) Hex HexNAc(2);MM=940.284201", "HexA(2)HexNAc(3)": "NT=HexA(2)HexNAc(3);AC=1942;CF=HexA(2) HexNAc(3);MM=961.302294", "dHex(1)Hex(4)HexA(1)": "NT=dHex(1)Hex(4)HexA(1);AC=1943;CF=dHex Hex(4) HexA;MM=970.301291", "Hex(5)HexA(1)": "NT=Hex(5)HexA(1);AC=1944;CF=Hex(5) HexA;MM=986.296206", "Hex(4)HexA(1)HexNAc(1)": "NT=Hex(4)HexA(1)HexNAc(1);AC=1945;CF=Hex(4) HexA HexNAc;MM=1027.322755", "dHex(3)Hex(3)HexNAc(1)": "NT=dHex(3)Hex(3)HexNAc(1);AC=1946;CF=dHex(3) Hex(3) HexNAc;MM=1127.41157", "Hex(6)HexNAc(1)": "NT=Hex(6)HexNAc(1);AC=1947;CF=Hex(6) HexNAc;MM=1175.396314", "Hex(1)HexNAc(4)dHex(1)Sulf(1)": "NT=Hex(1)HexNAc(4)dHex(1)Sulf(1);AC=1948;CF=Sulf dHex Hex HexNAc(4);MM=1200.385037", "dHex(1)Hex(2)HexNAc(1)NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(1)NeuAc(2);AC=1949;CF=dHex Hex(2) HexNAc NeuAc(2);MM=1255.433762", "dHex(3)Hex(3)HexNAc(2)": "NT=dHex(3)Hex(3)HexNAc(2);AC=1950;CF=dHex(3) Hex(3) HexNAc(2);MM=1330.490942", "dHex(2)Hex(1)HexNAc(4)Sulf(1)": "NT=dHex(2)Hex(1)HexNAc(4)Sulf(1);AC=1951;CF=Sulf dHex(2) Hex HexNAc(4);MM=1346.442946", "dHex(1)Hex(2)HexNAc(4)Sulf(2)": "NT=dHex(1)Hex(2)HexNAc(4)Sulf(2);AC=1952;CF=Sulf(2) dHex Hex(2) HexNAc(4);MM=1442.394675", "Hex(9)": "NT=Hex(9);AC=1953;CF=Hex(9);MM=1458.475412", "dHex(2)Hex(3)HexNAc(3)Sulf(1)": "NT=dHex(2)Hex(3)HexNAc(3)Sulf(1);AC=1954;CF=Sulf dHex(2) Hex(3) HexNAc(3);MM=1467.469221", "dHex(2)Hex(5)HexNAc(2)Me(1)": "NT=dHex(2)Hex(5)HexNAc(2)Me(1);AC=1955;CF=Me dHex(2) Hex(5) HexNAc(2);MM=1522.554331", "dHex(2)Hex(2)HexNAc(4)Sulf(2)": "NT=dHex(2)Hex(2)HexNAc(4)Sulf(2);AC=1956;CF=Sulf(2) dHex(2) Hex(2) HexNAc(4);MM=1588.452584", "Hex(9)HexNAc(1)": "NT=Hex(9)HexNAc(1);AC=1957;CF=Hex(9) HexNAc;MM=1661.554784", "dHex(3)Hex(2)HexNAc(4)Sulf(2)": "NT=dHex(3)Hex(2)HexNAc(4)Sulf(2);AC=1958;CF=Sulf(2) dHex(3) Hex(2) HexNAc(4);MM=1734.510493", "Hex(4)HexNAc(4)NeuGc(1)": "NT=Hex(4)HexNAc(4)NeuGc(1);AC=1959;CF=Hex(4) HexNAc(4) NeuGc;MM=1767.619116", "dHex(4)Hex(3)HexNAc(2)NeuAc(1)": "NT=dHex(4)Hex(3)HexNAc(2)NeuAc(1);AC=1960;CF=dHex(4) Hex(3) HexNAc(2) NeuAc;MM=1767.644268", "Hex(3)HexNAc(5)NeuAc(1)": "NT=Hex(3)HexNAc(5)NeuAc(1);AC=1961;CF=Hex(3) HexNAc(5) NeuAc;MM=1792.65075", "Hex(10)HexNAc(1)": "NT=Hex(10)HexNAc(1);AC=1962;CF=Hex(10) HexNAc;MM=1823.607608", "dHex(1)Hex(8)HexNAc(2)": "NT=dHex(1)Hex(8)HexNAc(2);AC=1963;CF=dHex Hex(8) HexNAc(2);MM=1848.639242", "Hex(3)HexNAc(4)NeuAc(2)": "NT=Hex(3)HexNAc(4)NeuAc(2);AC=1964;CF=Hex(3) HexNAc(4) NeuAc(2);MM=1880.666794", "dHex(2)Hex(3)HexNAc(4)NeuAc(1)": "NT=dHex(2)Hex(3)HexNAc(4)NeuAc(1);AC=1965;CF=dHex(2) Hex(3) HexNAc(4) NeuAc;MM=1881.687195", "dHex(2)Hex(2)HexNAc(6)Sulf(1)": "NT=dHex(2)Hex(2)HexNAc(6)Sulf(1);AC=1966;CF=Sulf dHex(2) Hex(2) HexNAc(6);MM=1914.654515", "Hex(5)HexNAc(4)NeuAc(1)Ac(1)": "NT=Hex(5)HexNAc(4)NeuAc(1)Ac(1);AC=1967;CF=Ac Hex(5) HexNAc(4) NeuAc;MM=1955.687589", "Hex(3)HexNAc(3)NeuAc(3)": "NT=Hex(3)HexNAc(3)NeuAc(3);AC=1968;CF=Hex(3) HexNAc(3) NeuAc(3);MM=1968.682838", "Hex(5)HexNAc(4)NeuAc(1)Ac(2)": "NT=Hex(5)HexNAc(4)NeuAc(1)Ac(2);AC=1969;CF=Ac(2) Hex(5) HexNAc(4) NeuAc;MM=1997.698154", "Unknown:162": "NT=Unknown:162;AC=1970;CF=H(18) C(8) O(3);MM=162.125595", "Unknown:177": "NT=Unknown:177;AC=1971;CF=H(-7) O Fe(3);MM=176.744957", "Unknown:210": "NT=Unknown:210;AC=1972;CF=H(22) C(13) O(2);MM=210.16198", "Unknown:216": "NT=Unknown:216;AC=1973;CF=H(16) C(10) O(5);MM=216.099774", "Unknown:234": "NT=Unknown:234;AC=1974;CF=H(14) C(9) O(7);MM=234.073953", "Unknown:248": "NT=Unknown:248;AC=1975;CF=H(28) C(13) O(4);MM=248.19876", "Unknown:250": "NT=Unknown:250;AC=1976;CF=H(4) C(10) N O(5) S;MM=249.981018", "Unknown:302": "NT=Unknown:302;AC=1977;CF=H(8) C(4) N(5) O(7) S(2);MM=301.986514", "Unknown:306": "NT=Unknown:306;AC=1978;CF=H(18) C(12) O(9);MM=306.095082", "Unknown:420": "NT=Unknown:420;AC=1979;CF=H(24) C(12) N(2) O(6) S(4);MM=420.051719", "Diethylphosphothione": "NT=Diethylphosphothione;AC=1986;CF=H(9) C(4) O(2) P S;MM=152.006087", "Dimethylphosphothione": "NT=Dimethylphosphothione;AC=1987;CF=H(5) C(2) O(2) P S;MM=123.974787", "monomethylphosphothione": "NT=monomethylphosphothione;AC=1989;CF=H(3) C O(2) P S;MM=109.959137", "CIGG": "NT=CIGG;AC=1990;CF=H(22) C(13) N(4) O(4) S;MM=330.136176", "GNLLFLACYCIGG": "NT=GNLLFLACYCIGG;AC=1991;CF=H(92) C(61) N(14) O(15) S(2);MM=1324.6308", "serotonylation": "NT=serotonylation;AC=1992;CF=H(9) C(10) N O;MM=159.068414", "TMPP-Ac:13C(9)": "NT=TMPP-Ac:13C(9);AC=1993;CF=H(33) C(20) 13C(9) O(10) P;MM=581.211328", "Xlink:DST[56]": "NT=Xlink:DST[56];AC=1999;CF=C(2) O(2);MM=55.989829", "Xlink:SDA": "NT=Xlink:SDA;AC=2000;CF=H(6) C(5) O;MM=82.041865", "ZQG": "NT=ZQG;AC=2001;CF=H(16) C(15) N(2) O(6);MM=320.100836", "Haloxon": "NT=Haloxon;AC=2006;CF=H(7) C(4) O(3) P Cl(2);MM=203.950987", "Methamidophos-S": "NT=Methamidophos-S;AC=2007;CF=H(4) C N O P S;MM=108.975121", "Methamidophos-O": "NT=Methamidophos-O;AC=2008;CF=H(4) C N O(2) P;MM=92.997965", "Nitrene": "NT=Nitrene;AC=2014;CF=H(-1) N;MM=12.995249", "shTMT": "NT=shTMT;AC=2015;CF=H(20) C(3) 13C(9) 15N(2) O(2);MM=235.176741", "TMTpro": "NT=TMTpro;AC=2016;CF=H(25) C(8) 13C(7) N 15N(2) O(3);MM=304.207146", "TMTpro_zero": "NT=TMTpro_zero;AC=2017;CF=H(25) C(15) N(3) O(3);MM=295.189592", "Xlink:EDC": "NT=Xlink:EDC;AC=2018;CF=H(-2) O(-1);MM=-18.010565", "Xlink:Disulfide": "NT=Xlink:Disulfide;AC=2020;CF=H(-2);MM=-2.01565", "Ser/Thr-KDO": "NT=Ser/Thr-KDO;AC=2022;CF=H(12) C(8) O(7);MM=220.058303", "Andro-H2O": "NT=Andro-H2O;AC=2025;CF=H(28) C(20) O(4);MM=332.19876", "Xlink:KQisopeptide": "NT=Xlink:KQisopeptide;AC=2026;CF=H(-3) N(-1);MM=-17.026549", "His+O(2)": "NT=His+O(2);AC=2027;CF=H(7) C(6) N(3) O(3);MM=169.048741", "Hex(6)HexNAc(5)NeuAc(3)": "NT=Hex(6)HexNAc(5)NeuAc(3);AC=2028;CF=Hex(6) HexNAc(5) NeuAc(3);MM=2861.000054", "Hex(7)HexNAc(6)": "NT=Hex(7)HexNAc(6);AC=2029;CF=Hex(7) HexNAc(6);MM=2352.846", "Met+O(2)": "NT=Met+O(2);AC=2033;CF=H(9) C(5) N O(3) S;MM=163.030314", "Gly+O(2)": "NT=Gly+O(2);AC=2034;CF=H(3) C(2) N O(3);MM=89.011293", "Pro+O(2)": "NT=Pro+O(2);AC=2035;CF=H(7) C(5) N O(3);MM=129.042593", "Lys+O(2)": "NT=Lys+O(2);AC=2036;CF=H(12) C(6) N(2) O(3);MM=160.084792", "Glu+O(2)": "NT=Glu+O(2);AC=2037;CF=H(7) C(5) N O(5);MM=161.032422", "LTX+Lophotoxin": "NT=LTX+Lophotoxin;AC=2039;CF=H(24) C(22) O(8);MM=416.147118", "MBS+peptide": "NT=MBS+peptide;AC=2040;CF=H(108) C(81) N(7) O(19);MM=1482.77", "3-hydroxybenzyl-phosphate": "NT=3-hydroxybenzyl-phosphate;AC=2041;CF=H(7) C(7) O(4) P;MM=186.008196", "phenyl-phosphate": "NT=phenyl-phosphate;AC=2042;CF=H(5) C(6) O(3) P;MM=155.997631", "RBS-ID_Uridine": "NT=RBS-ID_Uridine;AC=2044;CF=H(12) C(9) N(2) O(6);MM=244.069536", "shTMTpro": "NT=shTMTpro;AC=2050;CF=H(25) 13C(15) 15N(3) O(3);MM=313.231019", "Biotin:Aha-DADPS": "NT=Biotin:Aha-DADPS;AC=2052;CF=H(70) C(42) N(8) O(11) Si S;MM=922.465403", "Biotin:Aha-PC": "NT=Biotin:Aha-PC;AC=2053;CF=H(38) C(29) N(8) O(10) S;MM=690.24316", "pRBS-ID_4-thiouridine": "NT=pRBS-ID_4-thiouridine;AC=2054;CF=H(10) C(9) N(2) O(5);MM=226.058972", "pRBS-ID_6-thioguanosine": "NT=pRBS-ID_6-thioguanosine;AC=2055;CF=H(11) C(10) N(5) O(4);MM=265.081104", "6C-CysPAT": "NT=6C-CysPAT;AC=2057;CF=H(16) C(8) N O(4) P;MM=221.081695", "Xlink:DSPP[210]": "NT=Xlink:DSPP[210];AC=2058;CF=H(3) C(8) O(5) P;MM=209.97181", "Xlink:DSPP[228]": "NT=Xlink:DSPP[228];AC=2059;CF=H(5) C(8) O(6) P;MM=227.982375", "Xlink:DSPP[331]": "NT=Xlink:DSPP[331];AC=2060;CF=H(14) C(12) N O(8) P;MM=331.045704", "Xlink:DSPP[226]": "NT=Xlink:DSPP[226];AC=2061;CF=H(5) C(8) N O(5) P;MM=225.990534", "DBIA": "NT=DBIA;AC=2062;CF=H(24) C(14) N(4) O(3);MM=296.184841", "Mono_N\u03b3-propargyl-L-Gln_desthiobiotin": "NT=Mono_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2067;CF=H(44) C(26) N(8) O(8);MM=596.328211", "Di_L-Glu_N\u03b3-propargyl-L-Gln_desthiobiotin": "NT=Di_L-Glu_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2068;CF=H(51) C(31) N(9) O(10);MM=709.375889", "Di_L-Gln_N\u03b3-propargyl-L-Gln_desthiobiotin": "NT=Di_L-Gln_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2069;CF=H(52) C(31) N(10) O(9);MM=708.391873", "L-Gln": "NT=L-Gln;AC=2070;CF=H(8) C(5) N(2) O(2);MM=128.058578", "Glyceroyl": "NT=Glyceroyl;AC=2072;CF=H(4) C(3) O(3);MM=88.016044", "N6pAMP": "NT=N6pAMP;AC=2073;CF=H(14) C(13) N(5) O(6) P;MM=367.06817", "DabMal": "NT=DabMal;AC=2074;CF=H(21) C(21) N(5) O(3);MM=391.16444", "NBF": "NT=NBF;AC=2079;CF=H C(6) N(3) O(3);MM=163.001791", "DCP": "NT=DCP;AC=2080;CF=H(12) C(9) O(3);MM=168.078644", "Ethynylation": "NT=Ethynylation;AC=2081;CF=C(2);MM=24.0", "Acetylation": "NT=Acetyl;AC=1;CF=H(2) C(2) O;MM=42.010565", "Amidation": "NT=Amidated;AC=2;CF=H N O(-1);MM=-0.984016", "Biotinylation": "NT=Biotin;AC=3;CF=H(14) C(10) N(2) O(2) S;MM=226.077598", "Iodoacetamide derivative": "NT=Carbamidomethyl;AC=4;CF=H(3) C(2) N O;MM=57.021464", "Carbamylation": "NT=Carbamyl;AC=5;CF=H C N O;MM=43.005814", "Iodoacetic acid derivative": "NT=Carboxymethyl;AC=6;CF=H(2) C(2) O(2);MM=58.005479", "Deamidation": "NT=Deamidated;AC=7;CF=H(-1) N(-1) O;MM=0.984016", "Gygi ICAT(TM) d0": "NT=ICAT-G;AC=8;CF=H(38) C(22) N(4) O(6) S;MM=486.251206", "Gygi ICAT(TM) d8": "NT=ICAT-G:2H(8);AC=9;CF=H(30) 2H(8) C(22) N(4) O(6) S;MM=494.30142", "Homoserine": "NT=Met->Hse;AC=10;CF=H(-2) C(-1) O S(-1);MM=-29.992806", "Homoserine lactone": "NT=Met->Hsl;AC=11;CF=H(-4) C(-1) S(-1);MM=-48.003371", "Applied Biosystems original ICAT(TM) d8": "NT=ICAT-D:2H(8);AC=12;CF=H(26) 2H(8) C(20) N(4) O(5) S;MM=450.275205", "Applied Biosystems original ICAT(TM) d0": "NT=ICAT-D;AC=13;CF=H(34) C(20) N(4) O(5) S;MM=442.224991", "N-isopropylcarboxamidomethyl": "NT=NIPCAM;AC=17;CF=H(9) C(5) N O;MM=99.068414", "Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine": "NT=PEO-Iodoacetyl-LC-Biotin;AC=20;CF=H(30) C(18) N(4) O(5) S;MM=414.193691", "Phosphorylation": "NT=Phospho;AC=21;CF=H O(3) P;MM=79.966331", "Dehydration": "NT=Dehydrated;AC=23;CF=H(-2) O(-1);MM=-18.010565", "Acrylamide adduct": "NT=Propionamide;AC=24;CF=H(5) C(3) N O;MM=71.037114", "pyridylacetyl": "NT=Pyridylacetyl;AC=25;CF=H(5) C(7) N O;MM=119.037114", "S-carbamoylmethylcysteine cyclization (N-terminus)": "NT=Pyro-carbamidomethyl;AC=26;CF=C(2) O;MM=39.994915", "Pyro-glu from E": "NT=Glu->pyro-Glu;AC=27;CF=H(-2) O(-1);MM=-18.010565", "Pyro-glu from Q": "NT=Gln->pyro-Glu;AC=28;CF=H(-3) N(-1);MM=-17.026549", "N-Succinimidyl-2-morpholine acetate": "NT=SMA;AC=29;CF=H(9) C(6) N O(2);MM=127.063329", "Sodium adduct": "NT=Cation:Na;AC=30;CF=H(-1) Na;MM=21.981943", "S-pyridylethylation": "NT=Pyridylethyl;AC=31;CF=H(7) C(7) N;MM=105.057849", "Methylation": "NT=Methyl;AC=34;CF=H(2) C;MM=14.01565", "Oxidation or Hydroxylation": "NT=Oxidation;AC=35;CF=O;MM=15.994915", "di-Methylation": "NT=Dimethyl;AC=36;CF=H(4) C(2);MM=28.0313", "tri-Methylation": "NT=Trimethyl;AC=37;CF=H(6) C(3);MM=42.04695", "Beta-methylthiolation": "NT=Methylthio;AC=39;CF=H(2) C S;MM=45.987721", "O-Sulfonation": "NT=Sulfo;AC=40;CF=O(3) S;MM=79.956815", "Hexose": "NT=Hex;AC=41;CF=Hex;MM=162.052824", "N-Acetylhexosamine": "NT=HexNAc;AC=43;CF=HexNAc;MM=203.079373", "Farnesylation": "NT=Farnesyl;AC=44;CF=H(24) C(15);MM=204.187801", "Myristoylation": "NT=Myristoyl;AC=45;CF=H(26) C(14) O;MM=210.198366", "Pyridoxal phosphate": "NT=PyridoxalPhosphate;AC=46;CF=H(8) C(8) N O(5) P;MM=229.014009", "Palmitoylation": "NT=Palmitoyl;AC=47;CF=H(30) C(16) O;MM=238.229666", "Geranyl-geranyl": "NT=GeranylGeranyl;AC=48;CF=H(32) C(20);MM=272.250401", "Flavin adenine dinucleotide": "NT=FAD;AC=50;CF=H(31) C(27) N(9) O(15) P(2);MM=783.141486", "N-acyl diglyceride cysteine": "NT=Tripalmitate;AC=51;CF=H(96) C(51) O(5);MM=788.725777", "Guanidination": "NT=Guanidinyl;AC=52;CF=H(2) C N(2);MM=42.021798", "4-hydroxynonenal (HNE)": "NT=HNE;AC=53;CF=H(16) C(9) O(2);MM=156.11503", "hexuronic acid": "NT=Glucuronyl;AC=54;CF=HexA;MM=176.032088", "glutathione disulfide": "NT=Glutathione;AC=55;CF=H(15) C(10) N(3) O(6) S;MM=305.068156", "Acetate labeling reagent (N-term & K) (heavy form, +3amu)": "NT=Acetyl:2H(3);AC=56;CF=H(-1) 2H(3) C(2) O;MM=45.029395", "Propionate labeling reagent light form (N-term & K)": "NT=Propionyl;AC=58;CF=H(4) C(3) O;MM=56.026215", "Propionate labeling reagent heavy form (+3amu), N-term & K": "NT=Propionyl:13C(3);AC=59;CF=H(4) 13C(3) O;MM=59.036279", "Quaternary amine labeling reagent light form (N-term & K)": "NT=GIST-Quat;AC=60;CF=H(13) C(7) N O;MM=127.099714", "Quaternary amine labeling reagent heavy (+3amu) form, N-term & K": "NT=GIST-Quat:2H(3);AC=61;CF=H(10) 2H(3) C(7) N O;MM=130.118544", "Quaternary amine labeling reagent heavy form (+6amu), N-term & K": "NT=GIST-Quat:2H(6);AC=62;CF=H(7) 2H(6) C(7) N O;MM=133.137375", "Quaternary amine labeling reagent heavy form (+9amu), N-term & K": "NT=GIST-Quat:2H(9);AC=63;CF=H(4) 2H(9) C(7) N O;MM=136.156205", "Succinic anhydride labeling reagent light form (N-term & K)": "NT=Succinyl;AC=64;CF=H(4) C(4) O(3);MM=100.016044", "Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K": "NT=Succinyl:2H(4);AC=65;CF=2H(4) C(4) O(3);MM=104.041151", "Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K": "NT=Succinyl:13C(4);AC=66;CF=H(4) 13C(4) O(3);MM=104.029463", "Iminobiotinylation": "NT=Iminobiotin;AC=89;CF=H(15) C(10) N(3) O S;MM=225.093583", "ESP-Tag light d0": "NT=ESP;AC=90;CF=H(26) C(16) N(4) O(2) S;MM=338.177647", "ESP-Tag heavy d10": "NT=ESP:2H(10);AC=91;CF=H(16) 2H(10) C(16) N(4) O(2) S;MM=348.240414", "IMID d0": "NT=IMID;AC=94;CF=H(4) C(3) N(2);MM=68.037448", "IMID d4": "NT=IMID:2H(4);AC=95;CF=2H(4) C(3) N(2);MM=72.062555", "Acrylamide d3": "NT=Propionamide:2H(3);AC=97;CF=H(2) 2H(3) C(3) N O;MM=74.055944", "Applied Biosystems cleavable ICAT(TM) light": "NT=ICAT-C;AC=105;CF=H(17) C(10) N(3) O(3);MM=227.126991", "Applied Biosystems cleavable ICAT(TM) heavy": "NT=ICAT-C:13C(9);AC=106;CF=H(17) C 13C(9) N(3) O(3);MM=236.157185", "Addition of N-formyl met": "NT=FormylMet;AC=107;CF=H(9) C(6) N O(2) S;MM=159.035399", "N-ethylmaleimide on cysteines": "NT=Nethylmaleimide;AC=108;CF=H(7) C(6) N O(2);MM=125.047679", "Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced": "NT=OxLysBiotinRed;AC=112;CF=H(26) C(16) N(4) O(3) S;MM=354.172562", "Oxidized lysine biotinylated with biotin-LC-hydrazide": "NT=OxLysBiotin;AC=113;CF=H(24) C(16) N(4) O(3) S;MM=352.156911", "Oxidized proline biotinylated with biotin-LC-hydrazide, reduced": "NT=OxProBiotinRed;AC=114;CF=H(29) C(16) N(5) O(3) S;MM=371.199111", "Oxidized Proline biotinylated with biotin-LC-hydrazide": "NT=OxProBiotin;AC=115;CF=H(27) C(16) N(5) O(3) S;MM=369.183461", "Oxidized arginine biotinylated with biotin-LC-hydrazide": "NT=OxArgBiotin;AC=116;CF=H(22) C(15) N(2) O(3) S;MM=310.135113", "Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced": "NT=OxArgBiotinRed;AC=117;CF=H(24) C(15) N(2) O(3) S;MM=312.150763", "EDT-iodo-PEO-biotin": "NT=EDT-iodoacetyl-PEO-biotin;AC=118;CF=H(34) C(20) N(4) O(4) S(3);MM=490.174218", "Thio Ether Formation - BTP Adduct": "NT=IBTP;AC=119;CF=H(21) C(22) P;MM=316.138088", "ubiquitinylation residue": "NT=GG;AC=121;CF=H(6) C(4) N(2) O(2);MM=114.042927", "Formylation": "NT=Formyl;AC=122;CF=C O;MM=27.994915", "N-iodoacetyl, p-chlorobenzyl-12C6-glucamine": "NT=ICAT-H;AC=123;CF=H(20) C(15) N O(6) Cl;MM=345.097915", "N-iodoacetyl, p-chlorobenzyl-13C6-glucamine": "NT=ICAT-H:13C(6);AC=124;CF=H(20) C(9) 13C(6) N O(6) Cl;MM=351.118044", "Cleaved and reduced DSP/DTSSP crosslinker": "NT=Xlink:DTSSP[88];AC=126;CF=H(4) C(3) O S;MM=87.998285", "fluorination": "NT=Fluoro;AC=127;CF=H(-1) F;MM=17.990578", "5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR)": "NT=Fluorescein;AC=128;CF=H(13) C(22) N O(6);MM=387.074287", "Iodination": "NT=Iodo;AC=129;CF=H(-1) I;MM=125.896648", "di-Iodination": "NT=Diiodo;AC=130;CF=H(-2) I(2);MM=251.793296", "tri-Iodination": "NT=Triiodo;AC=131;CF=H(-3) I(3);MM=377.689944", "(cis-delta 5)-tetradecaenoyl": "NT=Myristoleyl;AC=134;CF=H(24) C(14) O;MM=208.182715", "(cis,cis-delta 5, delta 8)-tetradecadienoyl": "NT=Myristoyl+Delta:H(-4);AC=135;CF=H(22) C(14) O;MM=206.167065", "labeling reagent light form (N-term & K)": "NT=Benzoyl;AC=136;CF=H(4) C(7) O;MM=104.026215", "M5/Man5": "NT=Hex(5)HexNAc(2);AC=137;CF=Hex(5) HexNAc(2);MM=1216.422863", "5-dimethylaminonaphthalene-1-sulfonyl": "NT=Dansyl;AC=139;CF=H(11) C(12) N O(2) S;MM=233.051049", "ISD a-series (C-Term)": "NT=a-type-ion;AC=140;CF=H(-2) C(-1) O(-2);MM=-46.005479", "amidination of lysines or N-terminal amines with methyl acetimidate": "NT=Amidine;AC=141;CF=H(3) C(2) N;MM=41.026549", "HexNAc1dHex1": "NT=HexNAc(1)dHex(1);AC=142;CF=dHex HexNAc;MM=349.137281", "HexNAc2": "NT=HexNAc(2);AC=143;CF=HexNAc(2);MM=406.158745", "Hex3": "NT=Hex(3);AC=144;CF=Hex(3);MM=486.158471", "HexNAc1dHex2": "NT=HexNAc(1)dHex(2);AC=145;CF=dHex(2) HexNAc;MM=495.19519", "Hex1HexNAc1dHex1": "NT=Hex(1)HexNAc(1)dHex(1);AC=146;CF=dHex Hex HexNAc;MM=511.190105", "HexNAc2dHex1": "NT=HexNAc(2)dHex(1);AC=147;CF=dHex HexNAc(2);MM=552.216654", "Hex1HexNAc2": "NT=Hex(1)HexNAc(2);AC=148;CF=Hex HexNAc(2);MM=568.211569", "Hex1HexNAc1NeuAc1": "NT=Hex(1)HexNAc(1)NeuAc(1);AC=149;CF=Hex HexNAc NeuAc;MM=656.227613", "HexNAc2dHex2": "NT=HexNAc(2)dHex(2);AC=150;CF=dHex(2) HexNAc(2);MM=698.274563", "Hex1HexNAc2Pent1": "NT=Hex(1)HexNAc(2)Pent(1);AC=151;CF=Pent Hex HexNAc(2);MM=700.253828", "Hex1HexNAc2dHex1": "NT=Hex(1)HexNAc(2)dHex(1);AC=152;CF=dHex Hex HexNAc(2);MM=714.269478", "Hex2HexNAc2": "NT=Hex(2)HexNAc(2);AC=153;CF=Hex(2) HexNAc(2);MM=730.264392", "Hex3HexNAc1Pent1": "NT=Hex(3)HexNAc(1)Pent(1);AC=154;CF=Pent Hex(3) HexNAc;MM=821.280102", "Hex1HexNAc2dHex1Pent1": "NT=Hex(1)HexNAc(2)dHex(1)Pent(1);AC=155;CF=Pent dHex Hex HexNAc(2);MM=846.311736", "Hex1HexNAc2dHex2": "NT=Hex(1)HexNAc(2)dHex(2);AC=156;CF=dHex(2) Hex HexNAc(2);MM=860.327386", "Hex2HexNAc2Pent1": "NT=Hex(2)HexNAc(2)Pent(1);AC=157;CF=Pent Hex(2) HexNAc(2);MM=862.306651", "Hex2HexNAc2dHex1": "NT=Hex(2)HexNAc(2)dHex(1);AC=158;CF=dHex Hex(2) HexNAc(2);MM=876.322301", "M3/Man3": "NT=Hex(3)HexNAc(2);AC=159;CF=Hex(3) HexNAc(2);MM=892.317216", "Hex HexNAc NeuAc(2) ---OR--- Hex HexNAc(3) HexA": "NT=Hex(1)HexNAc(1)NeuAc(2);AC=160;CF=Hex HexNAc NeuAc(2);MM=947.323029", "Hex(3) HexNAc(2) Phos": "NT=Hex(3)HexNAc(2)Phos(1);AC=161;CF=H O(3) P Hex(3) HexNAc(2);MM=972.283547", "Selenium replaces sulfur": "NT=Delta:S(-1)Se(1);AC=162;CF=S(-1) Se;MM=47.944449", "glycosylated asparagine 18O labeling": "NT=Delta:H(-1)N(-1)18O(1);AC=170;CF=H(-1) N(-1) 18O;MM=2.988261", "Shimadzu NBS-13C": "NT=NBS:13C(6);AC=171;CF=H(3) 13C(6) N O(2) S;MM=159.008578", "Shimadzu NBS-12C": "NT=NBS;AC=172;CF=H(3) C(6) N O(2) S;MM=152.988449", "Michael addition of BHT quinone methide to Cysteine and Lysine": "NT=BHT;AC=176;CF=H(22) C(15) O;MM=218.167065", "phosphorylation to amine thiol": "NT=DAET;AC=178;CF=H(9) C(4) N O(-1) S;MM=87.050655", "13C(9) Silac label": "NT=Label:13C(9);AC=184;CF=C(-9) 13C(9);MM=9.030193", "C13 label (Phosphotyrosine)": "NT=Label:13C(9)+Phospho;AC=185;CF=H C(-9) 13C(9) O(3) P;MM=88.996524", "Hydroxyphenylglyoxal arginine": "NT=HPG;AC=186;CF=H(4) C(8) O(2);MM=132.021129", "bis(hydroxphenylglyoxal) arginine": "NT=2HPG;AC=187;CF=H(10) C(16) O(5);MM=282.052824", "13C(6) Silac label": "NT=Label:13C(6);AC=188;CF=C(-6) 13C(6);MM=6.020129", "O18 label at both C-terminal oxygens": "NT=Label:18O(2);AC=193;CF=O(-2) 18O(2);MM=4.008491", "6-aminoquinolyl-N-hydroxysuccinimidyl carbamate": "NT=AccQTag;AC=194;CF=H(6) C(10) N(2) O;MM=170.048013", "APTA-d0": "NT=QAT;AC=195;CF=H(19) C(9) N(2) O;MM=171.149738", "APTA d3": "NT=QAT:2H(3);AC=196;CF=H(16) 2H(3) C(9) N(2) O;MM=174.168569", "EAPTA d0": "NT=EQAT;AC=197;CF=H(20) C(10) N(2) O;MM=184.157563", "EAPTA d5": "NT=EQAT:2H(5);AC=198;CF=H(15) 2H(5) C(10) N(2) O;MM=189.188947", "DiMethyl-CHD2": "NT=Dimethyl:2H(4);AC=199;CF=2H(4) C(2);MM=32.056407", "EDT": "NT=Ethanedithiol;AC=200;CF=H(4) C(2) O(-1) S(2);MM=75.980527", "Acrolein addition +94": "NT=Delta:H(6)C(6)O(1);AC=205;CF=H(6) C(6) O;MM=94.041865", "Acrolein addition +56": "NT=Delta:H(4)C(3)O(1);AC=206;CF=H(4) C(3) O;MM=56.026215", "Acrolein addition +38": "NT=Delta:H(2)C(3);AC=207;CF=H(2) C(3);MM=38.01565", "Acrolein addition +76": "NT=Delta:H(4)C(6);AC=208;CF=H(4) C(6);MM=76.0313", "Acrolein addition +112": "NT=Delta:H(8)C(6)O(2);AC=209;CF=H(8) C(6) O(2);MM=112.05243", "N-ethyl iodoacetamide-d0": "NT=NEIAA;AC=211;CF=H(7) C(4) N O;MM=85.052764", "N-ethyl iodoacetamide-d5": "NT=NEIAA:2H(5);AC=212;CF=H(2) 2H(5) C(4) N O;MM=90.084148", "ADP Ribose addition": "NT=ADP-Ribosyl;AC=213;CF=H(13) C(10) N(5) O(9) P(2) Pent;MM=541.06111", "Representative mass and accurate mass for 116 & 117": "NT=iTRAQ4plex;AC=214;CF=H(12) C(4) 13C(3) N 15N O;MM=144.102063", "Light IDBEST tag for quantitation": "NT=IGBP;AC=243;CF=H(13) C(12) N(2) O(2) Br;MM=296.016039", "Acetaldehyde +26": "NT=Delta:H(2)C(2);AC=254;CF=H(2) C(2);MM=26.01565", "Acetaldehyde +28": "NT=Delta:H(4)C(2);AC=255;CF=H(4) C(2);MM=28.0313", "Propionaldehyde +40": "NT=Delta:H(4)C(3);AC=256;CF=H(4) C(3);MM=40.0313", "O18 Labeling": "NT=Label:18O(1);AC=258;CF=O(-1) 18O;MM=2.004246", "13C(6) 15N(2) Silac label": "NT=Label:13C(6)15N(2);AC=259;CF=C(-6) 13C(6) N(-2) 15N(2);MM=8.014199", "Thiophosphorylation": "NT=Thiophospho;AC=260;CF=H O(2) P S;MM=95.943487", "4-sulfophenyl isothiocyanate": "NT=SPITC;AC=261;CF=H(5) C(7) N O(3) S(2);MM=214.971084", "Trideuteration": "NT=Label:2H(3);AC=262;CF=H(-3) 2H(3);MM=3.01883", "phosphorylation to pyridyl thiol": "NT=PET;AC=264;CF=H(7) C(7) N O(-1) S;MM=121.035005", "13C(6) 15N(4) Silac label": "NT=Label:13C(6)15N(4);AC=267;CF=C(-6) 13C(6) N(-4) 15N(4);MM=10.008269", "13C(5) 15N(1) Silac label": "NT=Label:13C(5)15N(1);AC=268;CF=C(-5) 13C(5) N(-1) 15N;MM=6.013809", "13C(9) 15N(1) Silac label": "NT=Label:13C(9)15N(1);AC=269;CF=C(-9) 13C(9) N(-1) 15N;MM=10.027228", "nucleophilic addtion to cytopiloyne": "NT=Cytopiloyne;AC=270;CF=H(22) C(19) O(7);MM=362.136553", "nucleophilic addition to cytopiloyne+H2O": "NT=Cytopiloyne+water;AC=271;CF=H(24) C(19) O(8);MM=380.147118", "sulfonation of N-terminus": "NT=CAF;AC=272;CF=H(4) C(3) O(4) S;MM=135.983029", "nitrosylation": "NT=Nitrosyl;AC=275;CF=H(-1) N O;MM=28.990164", "Aminoethylbenzenesulfonylation": "NT=AEBS;AC=276;CF=H(9) C(8) N O(2) S;MM=183.035399", "Ethanolation": "NT=Ethanolyl;AC=278;CF=H(4) C(2) O;MM=44.026215", "Ethylation": "NT=Ethyl;AC=280;CF=H(4) C(2);MM=28.0313", "Cysteine modified Coenzyme A": "NT=CoenzymeA;AC=281;CF=H(34) C(21) N(7) O(16) P(3) S;MM=765.09956", "Deuterium Methylation of Lysine": "NT=Methyl:2H(2);AC=284;CF=2H(2) C;MM=16.028204", "Light Sulfanilic Acid (SA) C12": "NT=SulfanilicAcid;AC=285;CF=H(5) C(6) N O(2) S;MM=155.004099", "Heavy Sulfanilic Acid (SA) C13": "NT=SulfanilicAcid:13C(6);AC=286;CF=H(5) 13C(6) N O(2) S;MM=161.024228", "Tryptophan oxidation to oxolactone": "NT=Trp->Oxolactone;AC=288;CF=H(-2) O;MM=13.979265", "Biotin polyethyleneoxide amine": "NT=Biotin-PEO-Amine;AC=289;CF=H(28) C(16) N(4) O(3) S;MM=356.188212", "Pierce EZ-Link Biotin-HPDP": "NT=Biotin-HPDP;AC=290;CF=H(32) C(19) N(4) O(3) S(2);MM=428.191582", "Mercury Mercaptan": "NT=Delta:Hg(1);AC=291;CF=Hg;MM=201.970617", "(Iodo)-uracil MP": "NT=IodoU-AMP;AC=292;CF=H(11) C(9) N(2) O(9) P;MM=322.020217", "3-(carbamidomethylthio)propanoyl": "NT=CAMthiopropanoyl;AC=293;CF=H(7) C(5) N O(2) S;MM=145.019749", "biotinoyl-iodoacetyl-ethylenediamine": "NT=IED-Biotin;AC=294;CF=H(22) C(14) N(4) O(3) S;MM=326.141261", "Fucose": "NT=dHex;AC=295;CF=dHex;MM=146.057909", "deuterated methyl ester": "NT=Methyl:2H(3);AC=298;CF=H(-1) 2H(3) C;MM=17.03448", "Carboxylation": "NT=Carboxy;AC=299;CF=C O(2);MM=43.989829", "Monobromobimane derivative": "NT=Bromobimane;AC=301;CF=H(10) C(10) N(2) O(2);MM=190.074228", "Menadione quinone derivative": "NT=Menadione;AC=302;CF=H(6) C(11) O(2);MM=170.036779", "Cysteine mercaptoethanol": "NT=DeStreak;AC=303;CF=H(4) C(2) O S;MM=75.998285", "FA2/G0F": "NT=dHex(1)Hex(3)HexNAc(4);AC=305;CF=dHex Hex(3) HexNAc(4);MM=1444.53387", "FA2G1/G1F": "NT=dHex(1)Hex(4)HexNAc(4);AC=307;CF=dHex Hex(4) HexNAc(4);MM=1606.586693", "FA2G2/G2F": "NT=dHex(1)Hex(5)HexNAc(4);AC=308;CF=dHex Hex(5) HexNAc(4);MM=1768.639517", "A2/G0": "NT=Hex(3)HexNAc(4);AC=309;CF=Hex(3) HexNAc(4);MM=1298.475961", "A2G1/G1": "NT=Hex(4)HexNAc(4);AC=310;CF=Hex(4) HexNAc(4);MM=1460.528784", "A2G2/G2": "NT=Hex(5)HexNAc(4);AC=311;CF=Hex(5) HexNAc(4);MM=1622.581608", "Cysteinylation": "NT=Cysteinyl;AC=312;CF=H(5) C(3) N O(2) S;MM=119.004099", "Loss of Lysine": "NT=Lys-loss;AC=313;CF=H(-12) C(-6) N(-2) O(-1);MM=-128.094963", "2,5-dimethypyrrole": "NT=DimethylpyrroleAdduct;AC=316;CF=H(6) C(6);MM=78.04695", "MDA adduct +62": "NT=Delta:H(2)C(5);AC=318;CF=H(2) C(5);MM=62.01565", "MDA adduct +54": "NT=Delta:H(2)C(3)O(1);AC=319;CF=H(2) C(3) O;MM=54.010565", "Nethylmaleimidehydrolysis": "NT=Nethylmaleimide+water;AC=320;CF=H(9) C(6) N O(3);MM=143.058243", "bis-((N-iodoacetyl)piperazinyl)sulfonerhodamine": "NT=Xlink:B10621;AC=323;CF=H(30) C(31) N(4) O(6) S I;MM=713.093079", "Cleaved and reduced DTBP crosslinker": "NT=Xlink:DTBP[87];AC=324;CF=H(5) C(3) N S;MM=87.01427", "10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide": "NT=FP-Biotin;AC=325;CF=H(49) C(27) N(4) O(5) P S;MM=572.316129", "S-Ethylcystine from Serine": "NT=Delta:H(4)C(2)O(-1)S(1);AC=327;CF=H(4) C(2) O(-1) S;MM=44.008456", "monomethylation": "NT=Methyl:2H(3)13C(1);AC=329;CF=H(-1) 2H(3) 13C;MM=18.037835", "dimethylation": "NT=Dimethyl:2H(6)13C(2);AC=330;CF=H(-2) 2H(6) 13C(2);MM=36.07567", "thiophosphate labeled with biotin-HPDP": "NT=Thiophos-S-S-biotin;AC=332;CF=H(34) C(19) N(4) O(5) P S(3);MM=525.142894", "6-N-biotinylaminohexyl isopropyl phosphate": "NT=Can-FP-biotin;AC=333;CF=H(34) C(19) N(3) O(5) P S;MM=447.195679", "reduced 4-Hydroxynonenal": "NT=HNE+Delta:H(2);AC=335;CF=H(18) C(9) O(2);MM=158.13068", "Michael addition with methylamine": "NT=Methylamine;AC=337;CF=H(3) C N O(-1);MM=13.031634", "bromination": "NT=Bromo;AC=340;CF=H(-1) Br;MM=77.910511", "Tyrosine oxidation to 2-aminotyrosine": "NT=Amino;AC=342;CF=H N;MM=15.010899", "oxidized Arginine biotinylated with biotin hydrazide": "NT=Argbiotinhydrazide;AC=343;CF=H(13) C(9) N O(2) S;MM=199.066699", "Arginine oxidation to glutamic semialdehyde": "NT=Arg->GluSA;AC=344;CF=H(-5) C(-1) N(-3) O;MM=-43.053433", "cysteine oxidation to cysteic acid": "NT=Trioxidation;AC=345;CF=O(3);MM=47.984744", "His->Asn substitution": "NT=His->Asn;AC=348;CF=H(-1) C(-2) N(-1) O;MM=-23.015984", "His->Asp substitution": "NT=His->Asp;AC=349;CF=H(-2) C(-2) N(-2) O(2);MM=-22.031969", "tryptophan oxidation to hydroxykynurenin": "NT=Trp->Hydroxykynurenin;AC=350;CF=C(-1) O(2);MM=19.989829", "tryptophan oxidation to kynurenin": "NT=Trp->Kynurenin;AC=351;CF=C(-1) O;MM=3.994915", "Lysine oxidation to aminoadipic semialdehyde": "NT=Lys->Allysine;AC=352;CF=H(-3) N(-1) O;MM=-1.031634", "oxidized Lysine biotinylated with biotin hydrazide": "NT=Lysbiotinhydrazide;AC=353;CF=H(15) C(10) N(3) O(2) S;MM=241.088497", "Oxidation to nitro": "NT=Nitro;AC=354;CF=H(-1) N O(2);MM=44.985078", "oxidized proline biotinylated with biotin hydrazide": "NT=probiotinhydrazide;AC=357;CF=H(18) C(10) N(4) O(2) S;MM=258.115047", "proline oxidation to pyroglutamic acid": "NT=Pro->pyro-Glu;AC=359;CF=H(-2) O;MM=13.979265", "Proline oxidation to pyrrolidinone": "NT=Pro->Pyrrolidinone;AC=360;CF=H(-2) C(-1) O(-1);MM=-30.010565", "oxidized Threonine biotinylated with biotin hydrazide": "NT=Thrbiotinhydrazide;AC=361;CF=H(16) C(10) N(4) O S;MM=240.104482", "O-Diisopropylphosphorylation": "NT=Diisopropylphosphate;AC=362;CF=H(13) C(6) O(3) P;MM=164.060231", "O-Isopropylphosphorylation": "NT=Isopropylphospho;AC=363;CF=H(7) C(3) O(3) P;MM=122.013281", "Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form": "NT=ICPL:13C(6);AC=364;CF=H(3) 13C(6) N O;MM=111.041593", "Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form": "NT=ICPL;AC=365;CF=H(3) C(6) N O;MM=105.021464", "Deamidation in presence of O18": "NT=Deamidated:18O(1);AC=366;CF=H(-1) N(-1) 18O;MM=2.988261", "Dehydroalanine (from Cysteine)": "NT=Cys->Dha;AC=368;CF=H(-2) S(-1);MM=-33.987721", "Pyrrolidone from Proline": "NT=Pro->Pyrrolidone;AC=369;CF=C(-1) O(-1);MM=-27.994915", "Michael addition of hydroxymethylvinyl ketone to cysteine": "NT=HMVK;AC=371;CF=H(6) C(4) O(2);MM=86.036779", "Ornithine from Arginine": "NT=Arg->Orn;AC=372;CF=H(-2) C(-1) N(-2);MM=-42.021798", "Half of a disulfide bridge": "NT=Dehydro;AC=374;CF=H(-1);MM=-1.007825", "hydroxyfarnesyl": "NT=Hydroxyfarnesyl;AC=376;CF=H(24) C(15) O;MM=220.182715", "diacylglycerol": "NT=Diacylglycerol;AC=377;CF=H(68) C(37) O(4);MM=576.511761", "carboxyethyl": "NT=Carboxyethyl;AC=378;CF=H(4) C(3) O(2);MM=72.021129", "hypusine": "NT=Hypusine;AC=379;CF=H(9) C(4) N O;MM=87.068414", "retinal": "NT=Retinylidene;AC=380;CF=H(26) C(20);MM=266.203451", "alpha-amino adipic acid": "NT=Lys->AminoadipicAcid;AC=381;CF=H(-3) N(-1) O(2);MM=14.96328", "pyruvic acid from N-term cys": "NT=Cys->PyruvicAcid;AC=382;CF=H(-3) N(-1) O S(-1);MM=-33.003705", "Loss of ammonia": "NT=Ammonia-loss;AC=385;CF=H(-3) N(-1);MM=-17.026549", "phycocyanobilin": "NT=Phycocyanobilin;AC=387;CF=H(38) C(33) N(4) O(6);MM=586.279135", "phycoerythrobilin": "NT=Phycoerythrobilin;AC=388;CF=H(40) C(33) N(4) O(6);MM=588.294785", "phytochromobilin": "NT=Phytochromobilin;AC=389;CF=H(36) C(33) N(4) O(6);MM=584.263485", "heme": "NT=Heme;AC=390;CF=H(32) C(34) N(4) O(4) Fe;MM=616.177295", "molybdopterin": "NT=Molybdopterin;AC=391;CF=H(11) C(10) N(5) O(8) P S(2) Mo;MM=521.884073", "quinone": "NT=Quinone;AC=392;CF=H(-2) O(2);MM=29.974179", "glucosylgalactosyl hydroxylysine": "NT=Glucosylgalactosyl;AC=393;CF=O Hex(2);MM=340.100562", "glycosylphosphatidylinositol": "NT=GPIanchor;AC=394;CF=H(6) C(2) N O(3) P;MM=123.00853", "phosphoribosyl dephospho-coenzyme A": "NT=PhosphoribosyldephosphoCoA;AC=395;CF=H(42) C(26) N(7) O(19) P(3) S;MM=881.146904", "glycerylphosphorylethanolamine": "NT=GlycerylPE;AC=396;CF=H(12) C(5) N O(5) P;MM=197.04531", "triiodo": "NT=Triiodothyronine;AC=397;CF=H C(6) O I(3);MM=469.716159", "tetraiodo": "NT=Thyroxine;AC=398;CF=C(6) O I(4);MM=595.612807", "Dehydroalanine (from Tyrosine)": "NT=Tyr->Dha;AC=400;CF=H(-6) C(-6) O(-1);MM=-94.041865", "2-amino-3-oxo-butanoic_acid": "NT=Didehydro;AC=401;CF=H(-2);MM=-2.01565", "oxoalanine": "NT=Cys->Oxoalanine;AC=402;CF=H(-2) O S(-1);MM=-17.992806", "lactic acid from N-term Ser": "NT=Ser->LacticAcid;AC=403;CF=H(-1) N(-1);MM=-15.010899", "AMP": "NT=Phosphoadenosine;AC=405;CF=H(12) C(10) N(5) O(6) P;MM=329.05252", "hydroxycinnamyl": "NT=Hydroxycinnamyl;AC=407;CF=H(6) C(9) O(2);MM=146.036779", "glycosyl-L-hydroxyproline": "NT=Glycosyl;AC=408;CF=H(-2) C(-1) Hex;MM=148.037173", "flavin mononucleotide": "NT=FMNH;AC=409;CF=H(19) C(17) N(4) O(9) P;MM=454.088965", "S-diphytanylglycerol diether": "NT=Archaeol;AC=410;CF=H(86) C(43) O(2);MM=634.662782", "phenyl isocyanate": "NT=Phenylisocyanate;AC=411;CF=H(5) C(7) N O;MM=119.037114", "d5-phenyl isocyanate": "NT=Phenylisocyanate:2H(5);AC=412;CF=2H(5) C(7) N O;MM=124.068498", "phospho-guanosine": "NT=Phosphoguanosine;AC=413;CF=H(12) C(10) N(5) O(7) P;MM=345.047435", "hydroxymethyl": "NT=Hydroxymethyl;AC=414;CF=H(2) C O;MM=30.010565", "L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide)": "NT=MolybdopterinGD+Delta:S(-1)Se(1);AC=415;CF=H(47) C(40) N(20) O(26) P(4) S(3) Se Mo;MM=1620.930224", "dipyrrolylmethanemethyl": "NT=Dipyrrolylmethanemethyl;AC=416;CF=H(22) C(20) N(2) O(8);MM=418.137616", "uridine phosphodiester": "NT=PhosphoUridine;AC=417;CF=H(11) C(9) N(2) O(8) P;MM=306.025302", "glycerophospho": "NT=Glycerophospho;AC=419;CF=H(7) C(3) O(5) P;MM=154.00311", "thiocarboxylic acid": "NT=Carboxy->Thiocarboxy;AC=420;CF=O(-1) S;MM=15.977156", "persulfide": "NT=Sulfide;AC=421;CF=S;MM=31.972071", "N-pyruvic acid 2-iminyl": "NT=PyruvicAcidIminyl;AC=422;CF=H(2) C(3) O(2);MM=70.005479", "selenyl": "NT=Delta:Se(1);AC=423;CF=Se;MM=79.91652", "molybdenum bis(molybdopterin guanine dinucleotide)": "NT=MolybdopterinGD;AC=424;CF=H(47) C(40) N(20) O(26) P(4) S(4) Mo;MM=1572.985775", "dihydroxy": "NT=Dioxidation;AC=425;CF=O(2);MM=31.989829", "octanoyl": "NT=Octanoyl;AC=426;CF=H(14) C(8) O;MM=126.104465", "N-acetylglucosamine-1-phosphoryl": "NT=PhosphoHexNAc;AC=428;CF=H O(3) P HexNAc;MM=283.045704", "phosphoglycosyl-D-mannose-1-phosphoryl": "NT=PhosphoHex;AC=429;CF=H O(3) P Hex;MM=242.019154", "palmitoleyl": "NT=Palmitoleyl;AC=431;CF=H(28) C(16) O;MM=236.214016", "cholesterol ester": "NT=Cholesterol;AC=432;CF=H(44) C(27);MM=368.344302", "3,4-didehydroretinylidene": "NT=Didehydroretinylidene;AC=433;CF=H(24) C(20);MM=264.187801", "cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester": "NT=CHDH;AC=434;CF=H(26) C(17) O(4);MM=294.183109", "4-methyl-delta-1-pyrroline-5-carboxyl": "NT=Methylpyrroline;AC=435;CF=H(7) C(6) N O;MM=109.052764", "hydroxyheme": "NT=Hydroxyheme;AC=436;CF=H(30) C(34) N(4) O(4) Fe;MM=614.161645", "(3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine": "NT=MicrocinC7;AC=437;CF=H(19) C(13) N(6) O(6) P;MM=386.110369", "cyano": "NT=Cyano;AC=438;CF=H(-1) C N;MM=24.995249", "hydrogenase diiron subcluster": "NT=Diironsubcluster;AC=439;CF=H(-1) C(5) N(2) O(5) S(2) Fe(2);MM=342.786916", "amidino": "NT=Amidino;AC=440;CF=H(2) C N(2);MM=42.021798", "O3-(riboflavin phosphoryl)": "NT=FMN;AC=442;CF=H(19) C(17) N(4) O(8) P;MM=438.094051", "S-(4a-FMN)": "NT=FMNC;AC=443;CF=H(21) C(17) N(4) O(9) P;MM=456.104615", "copper sulfido molybdopterin cytosine dinuncleotide": "NT=CuSMo;AC=444;CF=H(24) C(19) N(8) O(15) P(2) S(3) Cu Mo;MM=922.834855", "5-hydroxy-N6,N6,N6-trimethyl": "NT=Hydroxytrimethyl;AC=445;CF=H(7) C(3) O;MM=59.04969", "reduction": "NT=Deoxy;AC=447;CF=O(-1);MM=-15.994915", "microcin E492 siderophore ester from serine": "NT=Microcin;AC=448;CF=H(37) C(36) N(3) O(20);MM=831.197041", "lipid": "NT=Decanoyl;AC=449;CF=H(18) C(10) O;MM=154.135765", "monoglutamyl": "NT=Glu;AC=450;CF=H(7) C(5) N O(3);MM=129.042593", "diglutamyl": "NT=GluGlu;AC=451;CF=H(14) C(10) N(2) O(6);MM=258.085186", "triglutamyl": "NT=GluGluGlu;AC=452;CF=H(21) C(15) N(3) O(9);MM=387.127779", "tetraglutamyl": "NT=GluGluGluGlu;AC=453;CF=H(28) C(20) N(4) O(12);MM=516.170373", "Hexosamine": "NT=HexN;AC=454;CF=HexN;MM=161.068808", "Free monolink of DMP crosslinker": "NT=Xlink:DMP[154];AC=455;CF=H(14) C(8) N(2) O;MM=154.110613", "Dimethyl pimelimidate crosslink": "NT=Xlink:DMP;AC=456;CF=H(10) C(7) N(2);MM=122.084398", "naphthalene-2,3-dicarboxaldehyde": "NT=NDA;AC=457;CF=H(5) C(13) N;MM=175.042199", "4-sulfophenyl isothiocyanate (Heavy C13)": "NT=SPITC:13C(6);AC=464;CF=H(5) C 13C(6) N O(3) S(2);MM=220.991213", "aminoethylcysteine": "NT=AEC-MAEC;AC=472;CF=H(5) C(2) N O(-1) S;MM=59.019355", "4-trimethyllammoniumbutyryl-": "NT=TMAB;AC=476;CF=H(14) C(7) N O;MM=128.107539", "d9-4-trimethyllammoniumbutyryl-": "NT=TMAB:2H(9);AC=477;CF=H(5) 2H(9) C(7) N O;MM=137.16403", "fluorescein-5-thiosemicarbazide": "NT=FTC;AC=478;CF=H(15) C(21) N(3) O(5) S;MM=421.073241", "4,4,5,5-D4 Lysine": "NT=Label:2H(4);AC=481;CF=H(-4) 2H(4);MM=4.025107", "Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines": "NT=DHP;AC=488;CF=H(8) C(8) N;MM=118.065674", "Heptose": "NT=Hep;AC=490;CF=Hep;MM=192.063388", "Bisphenol A diglycidyl ether derivative": "NT=BADGE;AC=493;CF=H(24) C(21) O(4);MM=340.167459", "Cy3 CyDye DIGE Fluor saturation dye": "NT=CyDye-Cy3;AC=494;CF=H(44) C(37) N(4) O(6) S;MM=672.298156", "Cy5 CyDye DIGE Fluor saturation dye": "NT=CyDye-Cy5;AC=495;CF=H(44) C(38) N(4) O(6) S;MM=684.298156", "Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K": "NT=BHTOH;AC=498;CF=H(22) C(15) O(2);MM=234.16198", "Heavy IDBEST tag for quantitation": "NT=IGBP:13C(2);AC=499;CF=H(13) C(10) 13C(2) N(2) O(2) Br;MM=298.022748", "Nmethylmaleimidehydrolysis": "NT=Nmethylmaleimide+water;AC=500;CF=H(7) C(5) N O(3);MM=129.042593", "3-methyl-2-pyridyl isocyanate": "NT=PyMIC;AC=501;CF=H(6) C(7) N(2) O;MM=134.048013", "Levuglandinyl - lysine lactam adduct": "NT=LG-lactam-K;AC=503;CF=H(28) C(20) O(4);MM=332.19876", "Levuglandinyl - lysine hydroxylactam adduct": "NT=LG-Hlactam-K;AC=504;CF=H(28) C(20) O(5);MM=348.193674", "Levuglandinyl - arginine lactam adduct": "NT=LG-lactam-R;AC=505;CF=H(26) C(19) N(-2) O(4);MM=290.176961", "Levuglandinyl - arginine hydroxylactam adduct": "NT=LG-Hlactam-R;AC=506;CF=H(26) C(19) N(-2) O(5);MM=306.171876", "DiMethyl-C13HD2": "NT=Dimethyl:2H(4)13C(2);AC=510;CF=2H(4) 13C(2);MM=34.063117", "Lactosylation": "NT=Hex(2);AC=512;CF=Hex(2);MM=324.105647", "[3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium": "NT=C8-QAT;AC=513;CF=H(29) C(14) N O;MM=227.224915", "propyl-1,2-dideoxy-2\\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\\'-thiazoline": "NT=PropylNAGthiazoline;AC=514;CF=H(14) C(9) N O(4) S;MM=232.064354", "fluorescein-5-maleimide": "NT=FNEM;AC=515;CF=H(13) C(24) N O(7);MM=427.069202", "Diethylation, analogous to Dimethylation": "NT=Diethyl;AC=518;CF=H(8) C(4);MM=56.0626", "4,4\\'-dianilino-1,1\\'-binaphthyl-5,5\\'-disulfonic acid": "NT=BisANS;AC=519;CF=H(22) C(32) N(2) O(6) S(2);MM=594.091928", "Piperidination": "NT=Piperidine;AC=520;CF=H(8) C(5);MM=68.0626", "Maleimide-Biotin": "NT=Maleimide-PEO2-Biotin;AC=522;CF=H(35) C(23) N(5) O(7) S;MM=525.225719", "Biot_LC_LC": "NT=Sulfo-NHS-LC-LC-Biotin;AC=523;CF=H(36) C(22) N(4) O(4) S;MM=452.245726", "Prompt loss of side chain from oxidised Met": "NT=Dethiomethyl;AC=526;CF=H(-4) C(-1) S(-1);MM=-48.003371", "Deamidation followed by a methylation": "NT=Methyl+Deamidated;AC=528;CF=H C N(-1) O;MM=14.999666", "Dimethylation of proline residue": "NT=Delta:H(5)C(2);AC=529;CF=H(5) C(2);MM=29.039125", "Replacement of proton by potassium": "NT=Cation:K;AC=530;CF=H(-1) K;MM=37.955882", "Replacement of proton by copper": "NT=Cation:Cu[I];AC=531;CF=H(-1) Cu;MM=61.921774", "Accurate mass for 114": "NT=iTRAQ4plex114;AC=532;CF=H(12) C(5) 13C(2) N(2) 18O;MM=144.105918", "Accurate mass for 115": "NT=iTRAQ4plex115;AC=533;CF=H(12) C(6) 13C N 15N 18O;MM=144.099599", "Ubiquitination": "NT=LRGG;AC=535;CF=H(29) C(16) N(7) O(4);MM=383.228103", "was 15dB-biotin": "NT=Biotin:Cayman-10141;AC=538;CF=H(54) C(35) N(4) O(4) S;MM=626.386577", "was PGA1-biotin": "NT=Biotin:Cayman-10013;AC=539;CF=H(60) C(36) N(4) O(5) S;MM=660.428442", "Ala->Ser substitution": "NT=Ala->Ser;AC=540;CF=O;MM=15.994915", "Ala->Thr substitution": "NT=Ala->Thr;AC=541;CF=H(2) C O;MM=30.010565", "Ala->Asp substitution": "NT=Ala->Asp;AC=542;CF=C O(2);MM=43.989829", "Ala->Pro substitution": "NT=Ala->Pro;AC=543;CF=H(2) C(2);MM=26.01565", "Ala->Gly substitution": "NT=Ala->Gly;AC=544;CF=H(-2) C(-1);MM=-14.01565", "Ala->Glu substitution": "NT=Ala->Glu;AC=545;CF=H(2) C(2) O(2);MM=58.005479", "Ala->Val substitution": "NT=Ala->Val;AC=546;CF=H(4) C(2);MM=28.0313", "Cys->Phe substitution": "NT=Cys->Phe;AC=547;CF=H(4) C(6) S(-1);MM=44.059229", "Cys->Ser substitution": "NT=Cys->Ser;AC=548;CF=O S(-1);MM=-15.977156", "Cys->Trp substitution": "NT=Cys->Trp;AC=549;CF=H(5) C(8) N S(-1);MM=83.070128", "Cys->Tyr substitution": "NT=Cys->Tyr;AC=550;CF=H(4) C(6) O S(-1);MM=60.054144", "Cys->Arg substitution": "NT=Cys->Arg;AC=551;CF=H(7) C(3) N(3) S(-1);MM=53.091927", "Cys->Gly substitution": "NT=Cys->Gly;AC=552;CF=H(-2) C(-1) S(-1);MM=-45.987721", "Asp->Ala substitution": "NT=Asp->Ala;AC=553;CF=C(-1) O(-2);MM=-43.989829", "Asp->His substitution": "NT=Asp->His;AC=554;CF=H(2) C(2) N(2) O(-2);MM=22.031969", "Asp->Asn substitution": "NT=Asp->Asn;AC=555;CF=H N O(-1);MM=-0.984016", "Asp->Gly substitution": "NT=Asp->Gly;AC=556;CF=H(-2) C(-2) O(-2);MM=-58.005479", "Asp->Tyr substitution": "NT=Asp->Tyr;AC=557;CF=H(4) C(5) O(-1);MM=48.036386", "Asp->Glu substitution": "NT=Asp->Glu;AC=558;CF=H(2) C;MM=14.01565", "Asp->Val substitution": "NT=Asp->Val;AC=559;CF=H(4) C O(-2);MM=-15.958529", "Glu->Ala substitution": "NT=Glu->Ala;AC=560;CF=H(-2) C(-2) O(-2);MM=-58.005479", "Glu->Gln substitution": "NT=Glu->Gln;AC=561;CF=H N O(-1);MM=-0.984016", "Glu->Asp substitution": "NT=Glu->Asp;AC=562;CF=H(-2) C(-1);MM=-14.01565", "Glu->Lys substitution": "NT=Glu->Lys;AC=563;CF=H(5) C N O(-2);MM=-0.94763", "Glu->Gly substitution": "NT=Glu->Gly;AC=564;CF=H(-4) C(-3) O(-2);MM=-72.021129", "Glu->Val substitution": "NT=Glu->Val;AC=565;CF=H(2) O(-2);MM=-29.974179", "Phe->Ser substitution": "NT=Phe->Ser;AC=566;CF=H(-4) C(-6) O;MM=-60.036386", "Phe->Cys substitution": "NT=Phe->Cys;AC=567;CF=H(-4) C(-6) S;MM=-44.059229", "Phe->Leu/Ile substitution": "NT=Phe->Xle;AC=568;CF=H(2) C(-3);MM=-33.98435", "Phe->Tyr substitution": "NT=Phe->Tyr;AC=569;CF=O;MM=15.994915", "Phe->Val substitution": "NT=Phe->Val;AC=570;CF=C(-4);MM=-48.0", "Gly->Ala substitution": "NT=Gly->Ala;AC=571;CF=H(2) C;MM=14.01565", "Gly->Ser substitution": "NT=Gly->Ser;AC=572;CF=H(2) C O;MM=30.010565", "Gly->Trp substitution": "NT=Gly->Trp;AC=573;CF=H(7) C(9) N;MM=129.057849", "Gly->Glu substitution": "NT=Gly->Glu;AC=574;CF=H(4) C(3) O(2);MM=72.021129", "Gly->Val substitution": "NT=Gly->Val;AC=575;CF=H(6) C(3);MM=42.04695", "Gly->Asp substitution": "NT=Gly->Asp;AC=576;CF=H(2) C(2) O(2);MM=58.005479", "Gly->Cys substitution": "NT=Gly->Cys;AC=577;CF=H(2) C S;MM=45.987721", "Gly->Arg substitution": "NT=Gly->Arg;AC=578;CF=H(9) C(4) N(3);MM=99.079647", "His->Pro substitution": "NT=His->Pro;AC=580;CF=C(-1) N(-2);MM=-40.006148", "His->Tyr substitution": "NT=His->Tyr;AC=581;CF=H(2) C(3) N(-2) O;MM=26.004417", "His->Gln substitution": "NT=His->Gln;AC=582;CF=H C(-1) N(-1) O;MM=-9.000334", "His->Arg substitution": "NT=His->Arg;AC=584;CF=H(5) N;MM=19.042199", "His->Leu/Ile substitution": "NT=His->Xle;AC=585;CF=H(4) N(-2);MM=-23.974848", "Leu/Ile->Thr substitution": "NT=Xle->Thr;AC=588;CF=H(-4) C(-2) O;MM=-12.036386", "Leu/Ile->Asn substitution": "NT=Xle->Asn;AC=589;CF=H(-5) C(-2) N O;MM=0.958863", "Leu/Ile->Lys substitution": "NT=Xle->Lys;AC=590;CF=H N;MM=15.010899", "Lys->Thr substitution": "NT=Lys->Thr;AC=594;CF=H(-5) C(-2) N(-1) O;MM=-27.047285", "Lys->Asn substitution": "NT=Lys->Asn;AC=595;CF=H(-6) C(-2) O;MM=-14.052036", "Lys->Glu substitution": "NT=Lys->Glu;AC=596;CF=H(-5) C(-1) N(-1) O(2);MM=0.94763", "Lys->Gln substitution": "NT=Lys->Gln;AC=597;CF=H(-4) C(-1) O;MM=-0.036386", "Lys->Met substitution": "NT=Lys->Met;AC=598;CF=H(-3) C(-1) N(-1) S;MM=2.945522", "Lys->Arg substitution": "NT=Lys->Arg;AC=599;CF=N(2);MM=28.006148", "Lys->Leu/Ile substitution": "NT=Lys->Xle;AC=600;CF=H(-1) N(-1);MM=-15.010899", "Leu/Ile->Ser substitution": "NT=Xle->Ser;AC=601;CF=H(-6) C(-3) O;MM=-26.052036", "Leu/Ile->Phe substitution": "NT=Xle->Phe;AC=602;CF=H(-2) C(3);MM=33.98435", "Leu/Ile->Trp substitution": "NT=Xle->Trp;AC=603;CF=H(-1) C(5) N;MM=72.995249", "Leu/Ile->Pro substitution": "NT=Xle->Pro;AC=604;CF=H(-4) C(-1);MM=-16.0313", "Leu/Ile->Val substitution": "NT=Xle->Val;AC=605;CF=H(-2) C(-1);MM=-14.01565", "Leu/Ile->His substitution": "NT=Xle->His;AC=606;CF=H(-4) N(2);MM=23.974848", "Leu/Ile->Gln substitution": "NT=Xle->Gln;AC=607;CF=H(-3) C(-1) N O;MM=14.974514", "Leu/Ile->Met substitution": "NT=Xle->Met;AC=608;CF=H(-2) C(-1) S;MM=17.956421", "Leu/Ile->Arg substitution": "NT=Xle->Arg;AC=609;CF=H N(3);MM=43.017047", "Met->Thr substitution": "NT=Met->Thr;AC=610;CF=H(-2) C(-1) O S(-1);MM=-29.992806", "Met->Arg substitution": "NT=Met->Arg;AC=611;CF=H(3) C N(3) S(-1);MM=25.060626", "Met->Lys substitution": "NT=Met->Lys;AC=613;CF=H(3) C N S(-1);MM=-2.945522", "Met->Leu/Ile substitution": "NT=Met->Xle;AC=614;CF=H(2) C S(-1);MM=-17.956421", "Met->Val substitution": "NT=Met->Val;AC=615;CF=S(-1);MM=-31.972071", "Asn->Ser substitution": "NT=Asn->Ser;AC=616;CF=H(-1) C(-1) N(-1);MM=-27.010899", "Asn->Thr substitution": "NT=Asn->Thr;AC=617;CF=H N(-1);MM=-12.995249", "Asn->Lys substitution": "NT=Asn->Lys;AC=618;CF=H(6) C(2) O(-1);MM=14.052036", "Asn->Tyr substitution": "NT=Asn->Tyr;AC=619;CF=H(3) C(5) N(-1);MM=49.020401", "Asn->His substitution": "NT=Asn->His;AC=620;CF=H C(2) N O(-1);MM=23.015984", "Asn->Asp substitution": "NT=Asn->Asp;AC=621;CF=H(-1) N(-1) O;MM=0.984016", "Asn->Leu/Ile substitution": "NT=Asn->Xle;AC=622;CF=H(5) C(2) N(-1) O(-1);MM=-0.958863", "Pro->Ser substitution": "NT=Pro->Ser;AC=623;CF=H(-2) C(-2) O;MM=-10.020735", "Pro->Ala substitution": "NT=Pro->Ala;AC=624;CF=H(-2) C(-2);MM=-26.01565", "Pro->His substitution": "NT=Pro->His;AC=625;CF=C N(2);MM=40.006148", "Pro->Gln substitution": "NT=Pro->Gln;AC=626;CF=H N O;MM=31.005814", "Pro->Thr substitution": "NT=Pro->Thr;AC=627;CF=C(-1) O;MM=3.994915", "Pro->Arg substitution": "NT=Pro->Arg;AC=628;CF=H(5) C N(3);MM=59.048347", "Pro->Leu/Ile substitution": "NT=Pro->Xle;AC=629;CF=H(4) C;MM=16.0313", "Gln->Pro substitution": "NT=Gln->Pro;AC=630;CF=H(-1) N(-1) O(-1);MM=-31.005814", "Gln->Lys substitution": "NT=Gln->Lys;AC=631;CF=H(4) C O(-1);MM=0.036386", "Gln->Glu substitution": "NT=Gln->Glu;AC=632;CF=H(-1) N(-1) O;MM=0.984016", "Gln->His substitution": "NT=Gln->His;AC=633;CF=H(-1) C N O(-1);MM=9.000334", "Gln->Arg substitution": "NT=Gln->Arg;AC=634;CF=H(4) C N(2) O(-1);MM=28.042534", "Gln->Leu/Ile substitution": "NT=Gln->Xle;AC=635;CF=H(3) C N(-1) O(-1);MM=-14.974514", "Arg->Ser substitution": "NT=Arg->Ser;AC=636;CF=H(-7) C(-3) N(-3) O;MM=-69.069083", "Arg->Trp substitution": "NT=Arg->Trp;AC=637;CF=H(-2) C(5) N(-2);MM=29.978202", "Arg->Thr substitution": "NT=Arg->Thr;AC=638;CF=H(-5) C(-2) N(-3) O;MM=-55.053433", "Arg->Pro substitution": "NT=Arg->Pro;AC=639;CF=H(-5) C(-1) N(-3);MM=-59.048347", "Arg->Lys substitution": "NT=Arg->Lys;AC=640;CF=N(-2);MM=-28.006148", "Arg->His substitution": "NT=Arg->His;AC=641;CF=H(-5) N(-1);MM=-19.042199", "Arg->Gln substitution": "NT=Arg->Gln;AC=642;CF=H(-4) C(-1) N(-2) O;MM=-28.042534", "Arg->Met substitution": "NT=Arg->Met;AC=643;CF=H(-3) C(-1) N(-3) S;MM=-25.060626", "Arg->Cys substitution": "NT=Arg->Cys;AC=644;CF=H(-7) C(-3) N(-3) S;MM=-53.091927", "Arg->Leu/Ile substitution": "NT=Arg->Xle;AC=645;CF=H(-1) N(-3);MM=-43.017047", "Arg->Gly substitution": "NT=Arg->Gly;AC=646;CF=H(-9) C(-4) N(-3);MM=-99.079647", "Ser->Phe substitution": "NT=Ser->Phe;AC=647;CF=H(4) C(6) O(-1);MM=60.036386", "Ser->Ala substitution": "NT=Ser->Ala;AC=648;CF=O(-1);MM=-15.994915", "Ser->Trp substitution": "NT=Ser->Trp;AC=649;CF=H(5) C(8) N O(-1);MM=99.047285", "Ser->Thr substitution": "NT=Ser->Thr;AC=650;CF=H(2) C;MM=14.01565", "Ser->Asn substitution": "NT=Ser->Asn;AC=651;CF=H C N;MM=27.010899", "Ser->Pro substitution": "NT=Ser->Pro;AC=652;CF=H(2) C(2) O(-1);MM=10.020735", "Ser->Tyr substitution": "NT=Ser->Tyr;AC=653;CF=H(4) C(6);MM=76.0313", "Ser->Cys substitution": "NT=Ser->Cys;AC=654;CF=O(-1) S;MM=15.977156", "Ser->Arg substitution": "NT=Ser->Arg;AC=655;CF=H(7) C(3) N(3) O(-1);MM=69.069083", "Ser->Leu/Ile substitution": "NT=Ser->Xle;AC=656;CF=H(6) C(3) O(-1);MM=26.052036", "Ser->Gly substitution": "NT=Ser->Gly;AC=657;CF=H(-2) C(-1) O(-1);MM=-30.010565", "Thr->Ser substitution": "NT=Thr->Ser;AC=658;CF=H(-2) C(-1);MM=-14.01565", "Thr->Ala substitution": "NT=Thr->Ala;AC=659;CF=H(-2) C(-1) O(-1);MM=-30.010565", "Thr->Asn substitution": "NT=Thr->Asn;AC=660;CF=H(-1) N;MM=12.995249", "Thr->Lys substitution": "NT=Thr->Lys;AC=661;CF=H(5) C(2) N O(-1);MM=27.047285", "Thr->Pro substitution": "NT=Thr->Pro;AC=662;CF=C O(-1);MM=-3.994915", "Thr->Met substitution": "NT=Thr->Met;AC=663;CF=H(2) C O(-1) S;MM=29.992806", "Thr->Leu/Ile substitution": "NT=Thr->Xle;AC=664;CF=H(4) C(2) O(-1);MM=12.036386", "Thr->Arg substitution": "NT=Thr->Arg;AC=665;CF=H(5) C(2) N(3) O(-1);MM=55.053433", "Val->Phe substitution": "NT=Val->Phe;AC=666;CF=C(4);MM=48.0", "Val->Ala substitution": "NT=Val->Ala;AC=667;CF=H(-4) C(-2);MM=-28.0313", "Val->Glu substitution": "NT=Val->Glu;AC=668;CF=H(-2) O(2);MM=29.974179", "Val->Met substitution": "NT=Val->Met;AC=669;CF=S;MM=31.972071", "Val->Asp substitution": "NT=Val->Asp;AC=670;CF=H(-4) C(-1) O(2);MM=15.958529", "Val->Leu/Ile substitution": "NT=Val->Xle;AC=671;CF=H(2) C;MM=14.01565", "Val->Gly substitution": "NT=Val->Gly;AC=672;CF=H(-6) C(-3);MM=-42.04695", "Trp->Ser substitution": "NT=Trp->Ser;AC=673;CF=H(-5) C(-8) N(-1) O;MM=-99.047285", "Trp->Cys substitution": "NT=Trp->Cys;AC=674;CF=H(-5) C(-8) N(-1) S;MM=-83.070128", "Trp->Arg substitution": "NT=Trp->Arg;AC=675;CF=H(2) C(-5) N(2);MM=-29.978202", "Trp->Gly substitution": "NT=Trp->Gly;AC=676;CF=H(-7) C(-9) N(-1);MM=-129.057849", "Trp->Leu/Ile substitution": "NT=Trp->Xle;AC=677;CF=H C(-5) N(-1);MM=-72.995249", "Tyr->Phe substitution": "NT=Tyr->Phe;AC=678;CF=O(-1);MM=-15.994915", "Tyr->Ser substitution": "NT=Tyr->Ser;AC=679;CF=H(-4) C(-6);MM=-76.0313", "Tyr->Asn substitution": "NT=Tyr->Asn;AC=680;CF=H(-3) C(-5) N;MM=-49.020401", "Tyr->His substitution": "NT=Tyr->His;AC=681;CF=H(-2) C(-3) N(2) O(-1);MM=-26.004417", "Tyr->Asp substitution": "NT=Tyr->Asp;AC=682;CF=H(-4) C(-5) O;MM=-48.036386", "Tyr->Cys substitution": "NT=Tyr->Cys;AC=683;CF=H(-4) C(-6) O(-1) S;MM=-60.054144", "Mass Defect Tag on lysine e-amino": "NT=BDMAPP;AC=684;CF=H(12) C(11) N O Br;MM=253.010225", "Nitroalkylation by Nitro Linoleic Acid": "NT=NA-LNO2;AC=685;CF=H(31) C(18) N O(4);MM=325.225309", "Nitroalkylation by Nitro Oleic Acid": "NT=NA-OA-NO2;AC=686;CF=H(33) C(18) N O(4);MM=327.240959", "Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form": "NT=ICPL:2H(4);AC=687;CF=H(-1) 2H(4) C(6) N O;MM=109.046571", "13C(6) 15N(1) Silac label": "NT=Label:13C(6)15N(1);AC=695;CF=C(-6) 13C(6) N(-1) 15N;MM=7.017164", "13C(6) 15N(2) (D)9 SILAC label": "NT=Label:2H(9)13C(6)15N(2);AC=696;CF=H(-9) 2H(9) C(-6) 13C(6) N(-2) 15N(2);MM=17.07069", "Nicotinic Acid": "NT=NIC;AC=697;CF=H(3) C(6) N O;MM=105.021464", "deuterated Nicotinic Acid": "NT=dNIC;AC=698;CF=H 2H(3) C(6) N O;MM=109.048119", "Dehydrated 4-hydroxynonenal": "NT=HNE-Delta:H(2)O;AC=720;CF=H(14) C(9) O;MM=138.104465", "4-Oxononenal (ONE)": "NT=4-ONE;AC=721;CF=H(14) C(9) O(2);MM=154.09938", "O-Dimethylphosphorylation": "NT=O-Dimethylphosphate;AC=723;CF=H(5) C(2) O(3) P;MM=107.997631", "O-Methylphosphorylation": "NT=O-Methylphosphate;AC=724;CF=H(3) C O(3) P;MM=93.981981", "O-Diethylphosphorylation": "NT=Diethylphosphate;AC=725;CF=H(9) C(4) O(3) P;MM=136.028931", "O-Ethylphosphorylation": "NT=Ethylphosphate;AC=726;CF=H(5) C(2) O(3) P;MM=107.997631", "O-pinacolylmethylphosphonylation": "NT=O-pinacolylmethylphosphonate;AC=727;CF=H(15) C(7) O(2) P;MM=162.080967", "Methylphosphonylation": "NT=Methylphosphonate;AC=728;CF=H(3) C O(2) P;MM=77.987066", "O-Isopropylmethylphosphonylation": "NT=O-Isopropylmethylphosphonate;AC=729;CF=H(9) C(4) O(2) P;MM=120.034017", "Representative mass and accurate mass for 113, 114, 116 & 117": "NT=iTRAQ8plex;AC=730;CF=H(24) C(7) 13C(7) N(3) 15N O(3);MM=304.20536", "Accurate mass for 115, 118, 119 & 121": "NT=iTRAQ8plex:13C(6)15N(2);AC=731;CF=H(24) C(8) 13C(6) N(2) 15N(2) O(3);MM=304.19904", "Carboxyl modification with ethanolamine": "NT=Ethanolamine;AC=734;CF=H(5) C(2) N;MM=43.042199", "Beta elimination of modified S or T followed by Michael addition of DTT": "NT=BEMAD_ST;AC=735;CF=H(8) C(4) O S(2);MM=136.001656", "Beta elimination of alkylated Cys followed by Michael addition of DTT": "NT=BEMAD_C;AC=736;CF=H(8) C(4) O(2) S;MM=120.0245", "Sixplex Tandem Mass Tag\u00ae": "NT=TMT6plex;AC=737;CF=H(20) C(8) 13C(4) N 15N O(2);MM=229.162932", "Duplex Tandem Mass Tag\u00ae": "NT=TMT2plex;AC=738;CF=H(20) C(11) 13C N(2) O(2);MM=225.155833", "Native Tandem Mass Tag\u00ae": "NT=TMT;AC=739;CF=H(20) C(12) N(2) O(2);MM=224.152478", "ExacTag Thiol label mass for 2-4-7-10 plex": "NT=ExacTagThiol;AC=740;CF=H(50) C(23) 13C(12) N(8) 15N(6) O(18);MM=972.365219", "ExacTag Amine label mass for 2-4-7-10 plex": "NT=ExacTagAmine;AC=741;CF=H(52) C(25) 13C(12) N(8) 15N(6) O(19) S;MM=1046.347854", "Dehydrated 4-Oxononenal Michael adduct": "NT=4-ONE+Delta:H(-2)O(-1);AC=743;CF=H(12) C(9) O;MM=136.088815", "Nitroso Sulfamethoxazole Sulphenamide thiol adduct": "NT=NO_SMX_SEMD;AC=744;CF=H(9) C(10) N(3) O(3) S;MM=251.036462", "Nitroso Sulfamethoxazole Sulfinamide thiol adduct": "NT=NO_SMX_SIMD;AC=746;CF=H(9) C(10) N(3) O(4) S;MM=267.031377", "Malonylation": "NT=Malonyl;AC=747;CF=H(2) C(3) O(3);MM=86.000394", "derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester": "NT=3sulfo;AC=748;CF=H(4) C(7) O(4) S;MM=183.983029", "trifluoroleucine replacement of leucine": "NT=trifluoro;AC=750;CF=H(-3) F(3);MM=53.971735", "tri nitro benzene": "NT=TNBS;AC=751;CF=H C(6) N(3) O(6);MM=210.986535", "Isotope Distribution Encoded Tag": "NT=IDEnT;AC=762;CF=H(7) C(9) N O Cl(2);MM=214.990469", "Beta elimination of modified S or T followed by Michael addition of labelled DTT": "NT=BEMAD_ST:2H(6);AC=763;CF=H(2) 2H(6) C(4) O S(2);MM=142.039317", "Beta elimination of alkylated Cys followed by Michael addition of labelled DTT": "NT=BEMAD_C:2H(6);AC=764;CF=H(2) 2H(6) C(4) O(2) S;MM=126.062161", "Removal of initiator methionine from protein N-terminus": "NT=Met-loss;AC=765;CF=H(-9) C(-5) N(-1) O(-1) S(-1);MM=-131.040485", "Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus": "NT=Met-loss+Acetyl;AC=766;CF=H(-7) C(-3) N(-1) S(-1);MM=-89.02992", "Menadione hydroquinone derivative": "NT=Menadione-HQ;AC=767;CF=H(8) C(11) O(2);MM=172.05243", "Mono-methylated lysine labelled with Acetyl_heavy": "NT=Methyl+Acetyl:2H(3);AC=768;CF=H 2H(3) C(3) O;MM=59.045045", "lapachenole photochemically added to cysteine": "NT=lapachenole;AC=771;CF=H(16) C(16) O(2);MM=240.11503", "13C(5) Silac label": "NT=Label:13C(5);AC=772;CF=C(-5) 13C(5);MM=5.016774", "Alkylation by biotinylated form of phenacyl bromide": "NT=Biotin-phenacyl;AC=774;CF=H(38) C(29) N(8) O(6) S;MM=626.263502", "Iodoacetic acid derivative w/ 13C label": "NT=Carboxymethyl:13C(2);AC=775;CF=H(2) 13C(2) O(2);MM=60.012189", "D5 N-ethylmaleimide on cysteines": "NT=NEM:2H(5);AC=776;CF=H(2) 2H(5) C(6) N O(2);MM=130.079062", "deuterium cysteamine modification to S or T": "NT=AEC-MAEC:2H(4);AC=792;CF=H 2H(4) C(2) N O(-1) S;MM=63.044462", "Hex1HexNAc1": "NT=Hex(1)HexNAc(1);AC=793;CF=Hex HexNAc;MM=365.132196", "13C6 labeled ubiquitinylation residue": "NT=Label:13C(6)+GG;AC=799;CF=H(6) C(-2) 13C(6) N(2) O(2);MM=120.063056", "was PentylamineBiotin": "NT=Biotin:Thermo-21345;AC=800;CF=H(25) C(15) N(3) O(2) S;MM=311.166748", "Labeling transglutaminase substrate on glutamine side chain": "NT=Pentylamine;AC=801;CF=H(10) C(5);MM=70.07825", "was Biotin-PEO4-hydrazide": "NT=Biotin:Thermo-21360;AC=811;CF=H(37) C(21) N(5) O(6) S;MM=487.246455", "fluorescent dye that labels cysteines": "NT=Cy3b-maleimide;AC=821;CF=H(38) C(37) N(4) O(7) S;MM=682.24612", "Enzymatic glycine removal leaving an amidated C-terminus": "NT=Gly-loss+Amide;AC=822;CF=H(-2) C(-2) O(-2);MM=-58.005479", "Intact or monolink BMOE crosslinker": "NT=Xlink:BMOE;AC=824;CF=H(8) C(10) N(2) O(4);MM=220.048407", "Intact DFDNB crosslinker": "NT=Xlink:DFDNB;AC=825;CF=C(6) N(2) O(4);MM=163.985807", "tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative": "NT=TMPP-Ac;AC=827;CF=H(33) C(29) O(10) P;MM=572.181134", "Dihydroxy methylglyoxal adduct": "NT=Dihydroxyimidazolidine;AC=830;CF=H(4) C(3) O(2);MM=72.021129", "Acetyl 4,4,5,5-D4 Lysine": "NT=Label:2H(4)+Acetyl;AC=834;CF=H(-2) 2H(4) C(2) O;MM=46.035672", "Acetyl 13C(6) Silac label": "NT=Label:13C(6)+Acetyl;AC=835;CF=H(2) C(-4) 13C(6) O;MM=48.030694", "Acetyl_13C(6) 15N(2) Silac label": "NT=Label:13C(6)15N(2)+Acetyl;AC=836;CF=H(2) C(-4) 13C(6) N(-2) 15N(2) O;MM=50.024764", "Arginine replacement by Nitropyrimidyl ornithine": "NT=Arg->Npo;AC=837;CF=H(-1) C(3) N O(2);MM=80.985078", "Sumo mutant Smt3-WT tail following trypsin digestion": "NT=EQIGG;AC=846;CF=H(32) C(20) N(6) O(8);MM=484.228162", "Adduct of phenylglyoxal with Arg": "NT=Arg2PG;AC=848;CF=H(10) C(16) O(4);MM=266.057909", "S-guanylation": "NT=cGMP;AC=849;CF=H(10) C(10) N(5) O(7) P;MM=343.031785", "S-guanylation-2": "NT=cGMP+RMP-loss;AC=851;CF=H(4) C(5) N(5) O;MM=150.041585", "Ubiquitination 2H4 lysine": "NT=Label:2H(4)+GG;AC=853;CF=H(2) 2H(4) C(4) N(2) O(2);MM=118.068034", "Methylglyoxal-derived hydroimidazolone": "NT=MG-H1;AC=859;CF=H(2) C(3) O;MM=54.010565", "Glyoxal-derived hydroimiadazolone": "NT=G-H1;AC=860;CF=C(2) O;MM=39.994915", "NHS ester linked Green Fluorescent Bodipy Dye": "NT=ZGB;AC=861;CF=H(53) B C(37) N(6) O(6) F(2) S;MM=758.380841", "SILAC": "NT=Label:13C(1)2H(3);AC=862;CF=H(-3) 2H(3) C(-1) 13C;MM=4.022185", "13C(6) 15N(2) Lysine glygly": "NT=Label:13C(6)15N(2)+GG;AC=864;CF=H(6) C(-2) 13C(6) 15N(2) O(2);MM=122.057126", "Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form": "NT=ICPL:13C(6)2H(4);AC=866;CF=H(-1) 2H(4) 13C(6) N O;MM=115.0667", "SUMOylation by SUMO-1": "NT=QEQTGG;AC=876;CF=H(36) C(23) N(8) O(11);MM=600.250354", "SUMOylation by SUMO-2/3": "NT=QQQTGG;AC=877;CF=H(37) C(23) N(9) O(10);MM=599.266339", "was ChromoBiotin": "NT=Biotin:Thermo-21325;AC=884;CF=H(45) C(34) N(7) O(7) S;MM=695.310118", "Oxidised methionine 13C(1)2H(3) SILAC label": "NT=Label:13C(1)2H(3)+Oxidation;AC=885;CF=H(-3) 2H(3) C(-1) 13C O;MM=20.0171", "2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate": "NT=HydroxymethylOP;AC=886;CF=H(4) C(6) O(2);MM=108.021129", "covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253)": "NT=MDCC;AC=887;CF=H(21) C(20) N(3) O(5);MM=383.148121", "mTRAQ light": "NT=mTRAQ;AC=888;CF=H(12) C(7) N(2) O;MM=140.094963", "mTRAQ medium": "NT=mTRAQ:13C(3)15N(1);AC=889;CF=H(12) C(4) 13C(3) N 15N O;MM=144.102063", "Thiol-reactive dye for fluorescence labelling of proteins": "NT=DyLight-maleimide;AC=890;CF=H(48) C(39) N(4) O(15) S(4);MM=940.1999", "Carbamidomethylated DTT modification of cysteine": "NT=CarbamidomethylDTT;AC=893;CF=H(11) C(6) N O(3) S(2);MM=209.018035", "Carboxymethylated DTT modification of cysteine": "NT=CarboxymethylDTT;AC=894;CF=H(10) C(6) O(4) S(2);MM=210.00205", "Biotin polyethyleneoxide (n=3) alkyne": "NT=Biotin-PEG-PRA;AC=895;CF=H(42) C(26) N(8) O(7);MM=578.317646", "Methionine replacement by azido homoalanine": "NT=Met->Aha;AC=896;CF=H(-3) C(-1) N(3) S(-1);MM=-4.986324", "SILAC 15N(4)": "NT=Label:15N(4);AC=897;CF=N(-4) 15N(4);MM=3.98814", "pyrophosphorylation of Ser/Thr": "NT=pyrophospho;AC=898;CF=H(2) O(6) P(2);MM=159.932662", "methionine replacement by homopropargylglycine": "NT=Met->Hpg;AC=899;CF=H(-2) C S(-1);MM=-21.987721", "2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine": "NT=4AcAllylGal;AC=901;CF=H(24) C(17) O(9);MM=372.142033", "Reaction with dimethylarsinous (AsIII) acid": "NT=DimethylArsino;AC=902;CF=H(5) C(2) As;MM=103.960719", "Lys->Cys substitution and carbamidomethylation": "NT=Lys->CamCys;AC=903;CF=H(-4) C(-1) O S;MM=31.935685", "Phe->Cys substitution and carbamidomethylation": "NT=Phe->CamCys;AC=904;CF=H(-1) C(-4) N O S;MM=12.962234", "Leu->Met substitution and sulfoxidation": "NT=Leu->MetOx;AC=905;CF=H(-2) C(-1) O S;MM=33.951335", "Lys->Met substitution and sulfoxidation": "NT=Lys->MetOx;AC=906;CF=H(-3) C(-1) N(-1) O S;MM=18.940436", "Gluconoylation": "NT=Galactosyl;AC=907;CF=O Hex;MM=178.047738", "Monolink of SMCC terminated with 3-(dimethylamino)-1-propylamine": "NT=Xlink:SMCC[321];AC=908;CF=H(27) C(17) N(3) O(3);MM=321.205242", "2,4-diacetamido-2,4,6-trideoxyglucopyranose": "NT=Bacillosamine;AC=910;CF=H(6) C(4) N(2) dHex;MM=228.111007", "Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL)": "NT=MTSL;AC=911;CF=H(14) C(9) N O S;MM=184.07961", "4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced": "NT=HNE-BAHAH;AC=912;CF=H(45) C(25) N(5) O(4) S;MM=511.319226", "Methylmalonylation on Serine": "NT=Methylmalonylation;AC=914;CF=H(4) C(4) O(3);MM=100.016044", "13C(4) 15N(2) Lysine glygly": "NT=Label:13C(4)15N(2)+GG;AC=923;CF=H(6) 13C(4) 15N(2) O(2);MM=120.050417", "ethyl amino": "NT=ethylamino;AC=926;CF=H(5) C(2) N O(-1);MM=27.047285", "2-OH-ethyl thio-Ser": "NT=MercaptoEthanol;AC=928;CF=H(4) C(2) S;MM=60.003371", "deamidation followed by esterification with ethanol": "NT=Ethyl+Deamidated;AC=931;CF=H(3) C(2) N(-1) O;MM=29.015316", "SUMOylation by SUMO-2/3 (formic acid cleavage)": "NT=VFQQQTGG;AC=932;CF=H(55) C(37) N(11) O(12);MM=845.403166", "SUMOylation by SUMO-1 (formic acid cleavage)": "NT=VIEVYQEQTGG;AC=933;CF=H(81) C(53) N(13) O(19);MM=1203.577168", "Photocleavable Biotin + GalNAz on O-GlcNAc": "NT=AMTzHexNAc2;AC=934;CF=H(30) C(19) N(6) O(10);MM=502.202341", "High molecular absorption maleimide label for proteins": "NT=Atto495Maleimide;AC=935;CF=H(32) C(27) N(5) O(3);MM=474.250515", "Chlorination of tyrosine residues": "NT=Chlorination;AC=936;CF=H(-1) Cl;MM=33.961028", "Dichlorination": "NT=dichlorination;AC=937;CF=H(-2) Cl(2);MM=67.922055", "Cysteine modifier": "NT=AROD;AC=938;CF=H(52) C(35) N(10) O(9) S(2);MM=820.336015", "carbamidomethylated Cys that undergoes beta-elimination and Michael addition of methylamine": "NT=Cys->methylaminoAla;AC=939;CF=H(3) C N S(-1);MM=-2.945522", "Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ethylamine": "NT=Cys->ethylaminoAla;AC=940;CF=H(5) C(2) N S(-1);MM=11.070128", "2,4-Dinitrobenzenesulfenyl": "NT=DNPS;AC=941;CF=H(3) C(6) N(2) O(4) S;MM=198.981352", "High molecular absorption label for proteins": "NT=SulfoGMBS;AC=942;CF=H(26) C(22) N(4) O(5) S;MM=458.162391", "Modified GMBS X linker": "NT=DimethylamineGMBS;AC=943;CF=H(21) C(13) N(3) O(3);MM=267.158292", "SILAC label": "NT=Label:15N(2)2H(9);AC=944;CF=H(-9) 2H(9) N(-2) 15N(2);MM=11.050561", "Levuglandinyl-lysine anhydrolactam adduct": "NT=LG-anhydrolactam;AC=946;CF=H(26) C(20) O(3);MM=314.188195", "Levuglandinyl-lysine pyrrole adduct": "NT=LG-pyrrole;AC=947;CF=H(28) C(20) O(3);MM=316.203845", "Levuglandinyl-lysine anhyropyrrole adduct": "NT=LG-anhyropyrrole;AC=948;CF=H(26) C(20) O(2);MM=298.19328", "Condensation product of 3-deoxyglucosone": "NT=3-deoxyglucosone;AC=949;CF=H(8) C(6) O(4);MM=144.042259", "Replacement of proton by lithium": "NT=Cation:Li;AC=950;CF=H(-1) Li;MM=6.008178", "Replacement of 2 protons by calcium": "NT=Cation:Ca[II];AC=951;CF=H(-2) Ca;MM=37.946941", "Replacement of 2 protons by iron": "NT=Cation:Fe[II];AC=952;CF=H(-2) Fe;MM=53.919289", "Replacement of 2 protons by nickel": "NT=Cation:Ni[II];AC=953;CF=H(-2) Ni;MM=55.919696", "Replacement of 2 protons by zinc": "NT=Cation:Zn[II];AC=954;CF=H(-2) Zn;MM=61.913495", "Replacement of proton by silver": "NT=Cation:Ag;AC=955;CF=H(-1) Ag;MM=105.897267", "Replacement of 2 protons by magnesium": "NT=Cation:Mg[II];AC=956;CF=H(-2) Mg;MM=21.969392", "S-(2-succinyl) cysteine": "NT=2-succinyl;AC=957;CF=H(4) C(4) O(4);MM=116.010959", "propargylamine": "NT=Propargylamine;AC=958;CF=H(3) C(3) N O(-1);MM=37.031634", "phospho-propargylamine": "NT=Phosphopropargyl;AC=959;CF=H(4) C(3) N O(2) P;MM=116.997965", "SUMOylation by SUMO-1 after tryptic cleavage": "NT=SUMO2135;AC=960;CF=H(137) C(90) N(21) O(37) S;MM=2135.920496", "SUMOylation by SUMO-2/3 after tryptic cleavage": "NT=SUMO3549;AC=961;CF=H(224) C(150) N(38) O(60) S;MM=3549.536568", "membrane protein extraction": "NT=thioacylPA;AC=967;CF=H(9) C(6) N O(2) S;MM=159.035399", "maleimide-3-saccharide": "NT=maleimide3;AC=971;CF=H(59) C(37) N(7) O(23);MM=969.366232", "maleimide-5-saccharide": "NT=maleimide5;AC=972;CF=H(79) C(49) N(7) O(33);MM=1293.471879", "2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate": "NT=Carbofuran;AC=977;CF=H(3) C(2) N O;MM=57.021464", "Benzyl isothiocyanate": "NT=BITC;AC=978;CF=H(7) C(8) N S;MM=149.02992", "Phenethyl isothiocyanate": "NT=PEITC;AC=979;CF=H(9) C(9) N S;MM=163.04557", "Condensation product of glucosone": "NT=glucosone;AC=981;CF=H(8) C(6) O(5);MM=160.037173", "Native cysteine-reactive Tandem Mass Tag\u00ae": "NT=cysTMT;AC=984;CF=H(25) C(14) N(3) O(2) S;MM=299.166748", "cysteine-reactive Sixplex Tandem Mass Tag\u00ae": "NT=cysTMT6plex;AC=985;CF=H(25) C(10) 13C(4) N(2) 15N O(2) S;MM=304.177202", "Dimethyl 13C(6) Silac label": "NT=Label:13C(6)+Dimethyl;AC=986;CF=H(4) C(-4) 13C(6);MM=34.051429", "Dimethyl 13C(6)15N(2) Silac label": "NT=Label:13C(6)15N(2)+Dimethyl;AC=987;CF=H(4) C(-4) 13C(6) N(-2) 15N(2);MM=36.045499", "replacement of proton with ammonium ion": "NT=Ammonium;AC=989;CF=H(3) N;MM=17.026549", "ISD (z+2)-series": "NT=ISD_z+2_ion;AC=991;CF=H(-1) N(-1);MM=-15.010899", "was Biotin-maleimide": "NT=Biotin:Sigma-B1267;AC=993;CF=H(27) C(20) N(5) O(5) S;MM=449.17329", "15N(1)": "NT=Label:15N(1);AC=994;CF=N(-1) 15N;MM=0.997035", "15N(2)": "NT=Label:15N(2);AC=995;CF=N(-2) 15N(2);MM=1.99407", "15N(3)": "NT=Label:15N(3);AC=996;CF=N(-3) 15N(3);MM=2.991105", "aminotyrosine with sulfation": "NT=sulfo+amino;AC=997;CF=H N O(3) S;MM=94.967714", "Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne)": "NT=AHA-Alkyne;AC=1000;CF=H(5) C(4) N(5) O S(-1);MM=107.077339", "Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne)": "NT=AHA-Alkyne-KDDDD;AC=1001;CF=H(37) C(26) N(11) O(14) S(-1);MM=695.280074", "(-)-epigallocatechin-3-gallate": "NT=EGCG1;AC=1002;CF=H(16) C(22) O(11);MM=456.069261", "(-)-dehydroepigallocatechin": "NT=EGCG2;AC=1003;CF=H(11) C(15) O(6);MM=287.055563", "Monomethylated Arg13C(6) 15N(4)": "NT=Label:13C(6)15N(4)+Methyl;AC=1004;CF=H(2) C(-5) 13C(6) N(-4) 15N(4);MM=24.023919", "Dimethylated Arg13C(6) 15N(4)": "NT=Label:13C(6)15N(4)+Dimethyl;AC=1005;CF=H(4) C(-4) 13C(6) N(-4) 15N(4);MM=38.039569", "2H(3) 13C(1) monomethylated Arg13C(6) 15N(4)": "NT=Label:13C(6)15N(4)+Methyl:2H(3)13C(1);AC=1006;CF=H(-1) 2H(3) C(-6) 13C(7) N(-4) 15N(4);MM=28.046104", "2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4)": "NT=Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2);AC=1007;CF=H(-2) 2H(6) C(-6) 13C(8) N(-4) 15N(4);MM=46.083939", "Sec Iodoacetamide derivative": "NT=Cys->CamSec;AC=1008;CF=H(3) C(2) N O S(-1) Se;MM=104.965913", "formaldehyde adduct": "NT=Thiazolidine;AC=1009;CF=C;MM=12.0", "Addition of DEDGFLYMVYASQETFG": "NT=DEDGFLYMVYASQETFG;AC=1010;CF=H(122) C(89) N(18) O(31) S;MM=1970.824411", "Nalpha-(3-maleimidylpropionyl)biocytin": "NT=Biotin:Invitrogen-M1602;AC=1012;CF=H(33) C(23) N(5) O(7) S;MM=523.210069", "glycidamide adduct": "NT=glycidamide;AC=1014;CF=H(5) C(3) N O(2);MM=87.032028", "C-terminal homoserine lactone and two aminohexanoic acids": "NT=Ahx2+Hsl;AC=1015;CF=H(27) C(16) N(3) O(3);MM=309.205242", "DMPO spin-trap nitrone adduct": "NT=DMPO;AC=1017;CF=H(9) C(6) N O;MM=111.068414", "Isotope-Coded Dimedone light form": "NT=ICDID;AC=1018;CF=H(10) C(8) O(2);MM=138.06808", "Isotope-Coded Dimedone heavy form": "NT=ICDID:2H(6);AC=1019;CF=H(4) 2H(6) C(8) O(2);MM=144.10574", "Water-quenched monolink of DSS/BS3 crosslinker": "NT=Xlink:DSS[156];AC=1020;CF=H(12) C(8) O(3);MM=156.078644", "Water quenched monolink of EGS cross-linker": "NT=Xlink:EGS[244];AC=1021;CF=H(12) C(10) O(7);MM=244.058303", "Water quenched monolink of DST crosslinker": "NT=Xlink:DST[132];AC=1022;CF=H(4) C(4) O(5);MM=132.005873", "Water quenched monolink of DSP/DTSSP crosslinker": "NT=Xlink:DTSSP[192];AC=1023;CF=H(8) C(6) O(3) S(2);MM=191.991486", "Water quenched monolink of SMCC": "NT=Xlink:SMCC[237];AC=1024;CF=H(15) C(12) N O(4);MM=237.100108", "Water quenched monolink of DMP crosslinker": "NT=Xlink:DMP[140];AC=1027;CF=H(12) C(7) N(2) O;MM=140.094963", "Cleavage product of EGS protein crosslinks by hydroylamine treatment": "NT=Xlink:EGS[115];AC=1028;CF=H(5) C(4) N O(3);MM=115.026943", "desthiobiotin modification of lysine": "NT=Biotin:Thermo-88310;AC=1031;CF=H(16) C(10) N(2) O(2);MM=196.121178", "Tyrosine caged with 2-nitrobenzyl (ONB)": "NT=2-nitrobenzyl;AC=1032;CF=H(5) C(7) N O(2);MM=135.032028", "N-ethylmaleimide on selenocysteines": "NT=Cys->SecNEM;AC=1033;CF=H(7) C(6) N O(2) S(-1) Se;MM=172.992127", "D5 N-ethylmaleimide on selenocysteines": "NT=Cys->SecNEM:2H(5);AC=1034;CF=H(2) 2H(5) C(6) N O(2) S(-1) Se;MM=178.023511", "Thiadiazolydation of Cys": "NT=Thiadiazole;AC=1035;CF=H(6) C(9) N(2) S;MM=174.025169", "Modification of cystein by withaferin": "NT=Withaferin;AC=1036;CF=H(38) C(28) O(6);MM=470.266839", "desthiobiotin fluorophosphonate": "NT=Biotin:Thermo-88317;AC=1037;CF=H(42) C(22) N(3) O(4) P;MM=443.291294", "TAMRA fluorophosphonate modification of serine": "NT=TAMRA-FP;AC=1038;CF=H(46) C(37) N(3) O(6) P;MM=659.312423", "Maleimide-Biotin + Water": "NT=Biotin:Thermo-21901+H2O;AC=1039;CF=H(37) C(23) N(5) O(8) S;MM=543.236284", "Ala->Cys substitution": "NT=Ala->Cys;AC=1044;CF=S;MM=31.972071", "Ala->Phe substitution": "NT=Ala->Phe;AC=1045;CF=H(4) C(6);MM=76.0313", "Ala->His substitution": "NT=Ala->His;AC=1046;CF=H(2) C(3) N(2);MM=66.021798", "Ala->Leu/Ile substitution": "NT=Ala->Xle;AC=1047;CF=H(6) C(3);MM=42.04695", "Ala->Lys substitution": "NT=Ala->Lys;AC=1048;CF=H(7) C(3) N;MM=57.057849", "Ala->Met substitution": "NT=Ala->Met;AC=1049;CF=H(4) C(2) S;MM=60.003371", "Ala->Asn substitution": "NT=Ala->Asn;AC=1050;CF=H C N O;MM=43.005814", "Ala->Gln substitution": "NT=Ala->Gln;AC=1051;CF=H(3) C(2) N O;MM=57.021464", "Ala->Arg substitution": "NT=Ala->Arg;AC=1052;CF=H(7) C(3) N(3);MM=85.063997", "Ala->Trp substitution": "NT=Ala->Trp;AC=1053;CF=H(5) C(8) N;MM=115.042199", "Ala->Tyr substitution": "NT=Ala->Tyr;AC=1054;CF=H(4) C(6) O;MM=92.026215", "Cys->Ala substitution": "NT=Cys->Ala;AC=1055;CF=S(-1);MM=-31.972071", "Cys->Asp substitution": "NT=Cys->Asp;AC=1056;CF=C O(2) S(-1);MM=12.017759", "Cys->Glu substitution": "NT=Cys->Glu;AC=1057;CF=H(2) C(2) O(2) S(-1);MM=26.033409", "Cys->His substitution": "NT=Cys->His;AC=1058;CF=H(2) C(3) N(2) S(-1);MM=34.049727", "Cys->Leu/Ile substitution": "NT=Cys->Xle;AC=1059;CF=H(6) C(3) S(-1);MM=10.07488", "Cys->Lys substitution": "NT=Cys->Lys;AC=1060;CF=H(7) C(3) N S(-1);MM=25.085779", "Cys->Met substitution": "NT=Cys->Met;AC=1061;CF=H(4) C(2);MM=28.0313", "Cys->Asn substitution": "NT=Cys->Asn;AC=1062;CF=H C N O S(-1);MM=11.033743", "Cys->Pro substitution": "NT=Cys->Pro;AC=1063;CF=H(2) C(2) S(-1);MM=-5.956421", "Cys->Gln substitution": "NT=Cys->Gln;AC=1064;CF=H(3) C(2) N O S(-1);MM=25.049393", "Cys->Thr substitution": "NT=Cys->Thr;AC=1065;CF=H(2) C O S(-1);MM=-1.961506", "Cys->Val substitution": "NT=Cys->Val;AC=1066;CF=H(4) C(2) S(-1);MM=-3.940771", "Asp->Cys substitution": "NT=Asp->Cys;AC=1067;CF=C(-1) O(-2) S;MM=-12.017759", "Asp->Phe substitution": "NT=Asp->Phe;AC=1068;CF=H(4) C(5) O(-2);MM=32.041471", "Asp->Leu/Ile substitution": "NT=Asp->Xle;AC=1069;CF=H(6) C(2) O(-2);MM=-1.942879", "Asp->Lys substitution": "NT=Asp->Lys;AC=1070;CF=H(7) C(2) N O(-2);MM=13.06802", "Asp->Met substitution": "NT=Asp->Met;AC=1071;CF=H(4) C O(-2) S;MM=16.013542", "Asp->Pro substitution": "NT=Asp->Pro;AC=1072;CF=H(2) C O(-2);MM=-17.974179", "Asp->Gln substitution": "NT=Asp->Gln;AC=1073;CF=H(3) C N O(-1);MM=13.031634", "Asp->Arg substitution": "NT=Asp->Arg;AC=1074;CF=H(7) C(2) N(3) O(-2);MM=41.074168", "Asp->Ser substitution": "NT=Asp->Ser;AC=1075;CF=C(-1) O(-1);MM=-27.994915", "Asp->Thr substitution": "NT=Asp->Thr;AC=1076;CF=H(2) O(-1);MM=-13.979265", "Asp->Trp substitution": "NT=Asp->Trp;AC=1077;CF=H(5) C(7) N O(-2);MM=71.05237", "Glu->Cys substitution": "NT=Glu->Cys;AC=1078;CF=H(-2) C(-2) O(-2) S;MM=-26.033409", "Glu->Phe substitution": "NT=Glu->Phe;AC=1079;CF=H(2) C(4) O(-2);MM=18.025821", "Glu->His substitution": "NT=Glu->His;AC=1080;CF=C N(2) O(-2);MM=8.016319", "Glu->Leu/Ile substitution": "NT=Glu->Xle;AC=1081;CF=H(4) C O(-2);MM=-15.958529", "Glu->Met substitution": "NT=Glu->Met;AC=1082;CF=H(2) O(-2) S;MM=1.997892", "Glu->Asn substitution": "NT=Glu->Asn;AC=1083;CF=H(-1) C(-1) N O(-1);MM=-14.999666", "Glu->Pro substitution": "NT=Glu->Pro;AC=1084;CF=O(-2);MM=-31.989829", "Glu->Arg substitution": "NT=Glu->Arg;AC=1085;CF=H(5) C N(3) O(-2);MM=27.058518", "Glu->Ser substitution": "NT=Glu->Ser;AC=1086;CF=H(-2) C(-2) O(-1);MM=-42.010565", "Glu->Thr substitution": "NT=Glu->Thr;AC=1087;CF=C(-1) O(-1);MM=-27.994915", "Glu->Trp substitution": "NT=Glu->Trp;AC=1088;CF=H(3) C(6) N O(-2);MM=57.03672", "Glu->Tyr substitution": "NT=Glu->Tyr;AC=1089;CF=H(2) C(4) O(-1);MM=34.020735", "Phe->Ala substitution": "NT=Phe->Ala;AC=1090;CF=H(-4) C(-6);MM=-76.0313", "Phe->Asp substitution": "NT=Phe->Asp;AC=1091;CF=H(-4) C(-5) O(2);MM=-32.041471", "Phe->Glu substitution": "NT=Phe->Glu;AC=1092;CF=H(-2) C(-4) O(2);MM=-18.025821", "Phe->Gly substitution": "NT=Phe->Gly;AC=1093;CF=H(-6) C(-7);MM=-90.04695", "Phe->His substitution": "NT=Phe->His;AC=1094;CF=H(-2) C(-3) N(2);MM=-10.009502", "Phe->Lys substitution": "NT=Phe->Lys;AC=1095;CF=H(3) C(-3) N;MM=-18.973451", "Phe->Met substitution": "NT=Phe->Met;AC=1096;CF=C(-4) S;MM=-16.027929", "Phe->Asn substitution": "NT=Phe->Asn;AC=1097;CF=H(-3) C(-5) N O;MM=-33.025486", "Phe->Pro substitution": "NT=Phe->Pro;AC=1098;CF=H(-2) C(-4);MM=-50.01565", "Phe->Gln substitution": "NT=Phe->Gln;AC=1099;CF=H(-1) C(-4) N O;MM=-19.009836", "Phe->Arg substitution": "NT=Phe->Arg;AC=1100;CF=H(3) C(-3) N(3);MM=9.032697", "Phe->Thr substitution": "NT=Phe->Thr;AC=1101;CF=H(-2) C(-5) O;MM=-46.020735", "Phe->Trp substitution": "NT=Phe->Trp;AC=1102;CF=H C(2) N;MM=39.010899", "Gly->Phe substitution": "NT=Gly->Phe;AC=1103;CF=H(6) C(7);MM=90.04695", "Gly->His substitution": "NT=Gly->His;AC=1104;CF=H(4) C(4) N(2);MM=80.037448", "Gly->Leu/Ile substitution": "NT=Gly->Xle;AC=1105;CF=H(8) C(4);MM=56.0626", "Gly->Lys substitution": "NT=Gly->Lys;AC=1106;CF=H(9) C(4) N;MM=71.073499", "Gly->Met substitution": "NT=Gly->Met;AC=1107;CF=H(6) C(3) S;MM=74.019021", "Gly->Asn substitution": "NT=Gly->Asn;AC=1108;CF=H(3) C(2) N O;MM=57.021464", "Gly->Pro substitution": "NT=Gly->Pro;AC=1109;CF=H(4) C(3);MM=40.0313", "Gly->Gln substitution": "NT=Gly->Gln;AC=1110;CF=H(5) C(3) N O;MM=71.037114", "Gly->Thr substitution": "NT=Gly->Thr;AC=1111;CF=H(4) C(2) O;MM=44.026215", "Gly->Tyr substitution": "NT=Gly->Tyr;AC=1112;CF=H(6) C(7) O;MM=106.041865", "His->Ala substitution": "NT=His->Ala;AC=1113;CF=H(-2) C(-3) N(-2);MM=-66.021798", "His->Cys substitution": "NT=His->Cys;AC=1114;CF=H(-2) C(-3) N(-2) S;MM=-34.049727", "His->Glu substitution": "NT=His->Glu;AC=1115;CF=C(-1) N(-2) O(2);MM=-8.016319", "His->Phe substitution": "NT=His->Phe;AC=1116;CF=H(2) C(3) N(-2);MM=10.009502", "His->Gly substitution": "NT=His->Gly;AC=1117;CF=H(-4) C(-4) N(-2);MM=-80.037448", "His->Lys substitution": "NT=His->Lys;AC=1119;CF=H(5) N(-1);MM=-8.963949", "His->Met substitution": "NT=His->Met;AC=1120;CF=H(2) C(-1) N(-2) S;MM=-6.018427", "His->Ser substitution": "NT=His->Ser;AC=1121;CF=H(-2) C(-3) N(-2) O;MM=-50.026883", "His->Thr substitution": "NT=His->Thr;AC=1122;CF=C(-2) N(-2) O;MM=-36.011233", "His->Val substitution": "NT=His->Val;AC=1123;CF=H(2) C(-1) N(-2);MM=-37.990498", "His->Trp substitution": "NT=His->Trp;AC=1124;CF=H(3) C(5) N(-1);MM=49.020401", "Leu/Ile->Ala substitution": "NT=Xle->Ala;AC=1125;CF=H(-6) C(-3);MM=-42.04695", "Leu/Ile->Cys substitution": "NT=Xle->Cys;AC=1126;CF=H(-6) C(-3) S;MM=-10.07488", "Leu/Ile->Asp substitution": "NT=Xle->Asp;AC=1127;CF=H(-6) C(-2) O(2);MM=1.942879", "Leu/Ile->Glu substitution": "NT=Xle->Glu;AC=1128;CF=H(-4) C(-1) O(2);MM=15.958529", "Leu/Ile->Gly substitution": "NT=Xle->Gly;AC=1129;CF=H(-8) C(-4);MM=-56.0626", "Leu/Ile->Tyr substitution": "NT=Xle->Tyr;AC=1130;CF=H(-2) C(3) O;MM=49.979265", "Lys->Ala substitution": "NT=Lys->Ala;AC=1131;CF=H(-7) C(-3) N(-1);MM=-57.057849", "Lys->Cys substitution": "NT=Lys->Cys;AC=1132;CF=H(-7) C(-3) N(-1) S;MM=-25.085779", "Lys->Asp substitution": "NT=Lys->Asp;AC=1133;CF=H(-7) C(-2) N(-1) O(2);MM=-13.06802", "Lys->Phe substitution": "NT=Lys->Phe;AC=1134;CF=H(-3) C(3) N(-1);MM=18.973451", "Lys->Gly substitution": "NT=Lys->Gly;AC=1135;CF=H(-9) C(-4) N(-1);MM=-71.073499", "Lys->His substitution": "NT=Lys->His;AC=1136;CF=H(-5) N;MM=8.963949", "Lys->Pro substitution": "NT=Lys->Pro;AC=1137;CF=H(-5) C(-1) N(-1);MM=-31.042199", "Lys->Ser substitution": "NT=Lys->Ser;AC=1138;CF=H(-7) C(-3) N(-1) O;MM=-41.062935", "Lys->Val substitution": "NT=Lys->Val;AC=1139;CF=H(-3) C(-1) N(-1);MM=-29.026549", "Lys->Trp substitution": "NT=Lys->Trp;AC=1140;CF=H(-2) C(5);MM=57.98435", "Lys->Tyr substitution": "NT=Lys->Tyr;AC=1141;CF=H(-3) C(3) N(-1) O;MM=34.968366", "Met->Ala substitution": "NT=Met->Ala;AC=1142;CF=H(-4) C(-2) S(-1);MM=-60.003371", "Met->Cys substitution": "NT=Met->Cys;AC=1143;CF=H(-4) C(-2);MM=-28.0313", "Met->Asp substitution": "NT=Met->Asp;AC=1144;CF=H(-4) C(-1) O(2) S(-1);MM=-16.013542", "Met->Glu substitution": "NT=Met->Glu;AC=1145;CF=H(-2) O(2) S(-1);MM=-1.997892", "Met->Phe substitution": "NT=Met->Phe;AC=1146;CF=C(4) S(-1);MM=16.027929", "Met->Gly substitution": "NT=Met->Gly;AC=1147;CF=H(-6) C(-3) S(-1);MM=-74.019021", "Met->His substitution": "NT=Met->His;AC=1148;CF=H(-2) C N(2) S(-1);MM=6.018427", "Met->Asn substitution": "NT=Met->Asn;AC=1149;CF=H(-3) C(-1) N O S(-1);MM=-16.997557", "Met->Pro substitution": "NT=Met->Pro;AC=1150;CF=H(-2) S(-1);MM=-33.987721", "Met->Gln substitution": "NT=Met->Gln;AC=1151;CF=H(-1) N O S(-1);MM=-2.981907", "Met->Ser substitution": "NT=Met->Ser;AC=1152;CF=H(-4) C(-2) O S(-1);MM=-44.008456", "Met->Trp substitution": "NT=Met->Trp;AC=1153;CF=H C(6) N S(-1);MM=55.038828", "Met->Tyr substitution": "NT=Met->Tyr;AC=1154;CF=C(4) O S(-1);MM=32.022844", "Asn->Ala substitution": "NT=Asn->Ala;AC=1155;CF=H(-1) C(-1) N(-1) O(-1);MM=-43.005814", "Asn->Cys substitution": "NT=Asn->Cys;AC=1156;CF=H(-1) C(-1) N(-1) O(-1) S;MM=-11.033743", "Asn->Glu substitution": "NT=Asn->Glu;AC=1157;CF=H C N(-1) O;MM=14.999666", "Asn->Phe substitution": "NT=Asn->Phe;AC=1158;CF=H(3) C(5) N(-1) O(-1);MM=33.025486", "Asn->Gly substitution": "NT=Asn->Gly;AC=1159;CF=H(-3) C(-2) N(-1) O(-1);MM=-57.021464", "Asn->Met substitution": "NT=Asn->Met;AC=1160;CF=H(3) C N(-1) O(-1) S;MM=16.997557", "Asn->Pro substitution": "NT=Asn->Pro;AC=1161;CF=H C N(-1) O(-1);MM=-16.990164", "Asn->Gln substitution": "NT=Asn->Gln;AC=1162;CF=H(2) C;MM=14.01565", "Asn->Arg substitution": "NT=Asn->Arg;AC=1163;CF=H(6) C(2) N(2) O(-1);MM=42.058184", "Asn->Val substitution": "NT=Asn->Val;AC=1164;CF=H(3) C N(-1) O(-1);MM=-14.974514", "Asn->Trp substitution": "NT=Asn->Trp;AC=1165;CF=H(4) C(7) O(-1);MM=72.036386", "Pro->Cys substitution": "NT=Pro->Cys;AC=1166;CF=H(-2) C(-2) S;MM=5.956421", "Pro->Asp substitution": "NT=Pro->Asp;AC=1167;CF=H(-2) C(-1) O(2);MM=17.974179", "Pro->Glu substitution": "NT=Pro->Glu;AC=1168;CF=O(2);MM=31.989829", "Pro->Phe substitution": "NT=Pro->Phe;AC=1169;CF=H(2) C(4);MM=50.01565", "Pro->Gly substitution": "NT=Pro->Gly;AC=1170;CF=H(-4) C(-3);MM=-40.0313", "Pro->Lys substitution": "NT=Pro->Lys;AC=1171;CF=H(5) C N;MM=31.042199", "Pro->Met substitution": "NT=Pro->Met;AC=1172;CF=H(2) S;MM=33.987721", "Pro->Asn substitution": "NT=Pro->Asn;AC=1173;CF=H(-1) C(-1) N O;MM=16.990164", "Pro->Val substitution": "NT=Pro->Val;AC=1174;CF=H(2);MM=2.01565", "Pro->Trp substitution": "NT=Pro->Trp;AC=1175;CF=H(3) C(6) N;MM=89.026549", "Pro->Tyr substitution": "NT=Pro->Tyr;AC=1176;CF=H(2) C(4) O;MM=66.010565", "Gln->Ala substitution": "NT=Gln->Ala;AC=1177;CF=H(-3) C(-2) N(-1) O(-1);MM=-57.021464", "Gln->Cys substitution": "NT=Gln->Cys;AC=1178;CF=H(-3) C(-2) N(-1) O(-1) S;MM=-25.049393", "Gln->Asp substitution": "NT=Gln->Asp;AC=1179;CF=H(-3) C(-1) N(-1) O;MM=-13.031634", "Gln->Phe substitution": "NT=Gln->Phe;AC=1180;CF=H C(4) N(-1) O(-1);MM=19.009836", "Gln->Gly substitution": "NT=Gln->Gly;AC=1181;CF=H(-5) C(-3) N(-1) O(-1);MM=-71.037114", "Gln->Met substitution": "NT=Gln->Met;AC=1182;CF=H N(-1) O(-1) S;MM=2.981907", "Gln->Asn substitution": "NT=Gln->Asn;AC=1183;CF=H(-2) C(-1);MM=-14.01565", "Gln->Ser substitution": "NT=Gln->Ser;AC=1184;CF=H(-3) C(-2) N(-1);MM=-41.026549", "Gln->Thr substitution": "NT=Gln->Thr;AC=1185;CF=H(-1) C(-1) N(-1);MM=-27.010899", "Gln->Val substitution": "NT=Gln->Val;AC=1186;CF=H N(-1) O(-1);MM=-28.990164", "Gln->Trp substitution": "NT=Gln->Trp;AC=1187;CF=H(2) C(6) O(-1);MM=58.020735", "Gln->Tyr substitution": "NT=Gln->Tyr;AC=1188;CF=H C(4) N(-1);MM=35.004751", "Arg->Ala substitution": "NT=Arg->Ala;AC=1189;CF=H(-7) C(-3) N(-3);MM=-85.063997", "Arg->Asp substitution": "NT=Arg->Asp;AC=1190;CF=H(-7) C(-2) N(-3) O(2);MM=-41.074168", "Arg->Glu substitution": "NT=Arg->Glu;AC=1191;CF=H(-5) C(-1) N(-3) O(2);MM=-27.058518", "Arg->Asn substitution": "NT=Arg->Asn;AC=1192;CF=H(-6) C(-2) N(-2) O;MM=-42.058184", "Arg->Val substitution": "NT=Arg->Val;AC=1193;CF=H(-3) C(-1) N(-3);MM=-57.032697", "Arg->Tyr substitution": "NT=Arg->Tyr;AC=1194;CF=H(-3) C(3) N(-3) O;MM=6.962218", "Arg->Phe substitution": "NT=Arg->Phe;AC=1195;CF=H(-3) C(3) N(-3);MM=-9.032697", "Ser->Asp substitution": "NT=Ser->Asp;AC=1196;CF=C O;MM=27.994915", "Ser->Glu substitution": "NT=Ser->Glu;AC=1197;CF=H(2) C(2) O;MM=42.010565", "Ser->His substitution": "NT=Ser->His;AC=1198;CF=H(2) C(3) N(2) O(-1);MM=50.026883", "Ser->Lys substitution": "NT=Ser->Lys;AC=1199;CF=H(7) C(3) N O(-1);MM=41.062935", "Ser->Met substitution": "NT=Ser->Met;AC=1200;CF=H(4) C(2) O(-1) S;MM=44.008456", "Ser->Gln substitution": "NT=Ser->Gln;AC=1201;CF=H(3) C(2) N;MM=41.026549", "Ser->Val substitution": "NT=Ser->Val;AC=1202;CF=H(4) C(2) O(-1);MM=12.036386", "Thr->Cys substitution": "NT=Thr->Cys;AC=1203;CF=H(-2) C(-1) O(-1) S;MM=1.961506", "Thr->Asp substitution": "NT=Thr->Asp;AC=1204;CF=H(-2) O;MM=13.979265", "Thr->Glu substitution": "NT=Thr->Glu;AC=1205;CF=C O;MM=27.994915", "Thr->Phe substitution": "NT=Thr->Phe;AC=1206;CF=H(2) C(5) O(-1);MM=46.020735", "Thr->Gly substitution": "NT=Thr->Gly;AC=1207;CF=H(-4) C(-2) O(-1);MM=-44.026215", "Thr->His substitution": "NT=Thr->His;AC=1208;CF=C(2) N(2) O(-1);MM=36.011233", "Thr->Gln substitution": "NT=Thr->Gln;AC=1209;CF=H C N;MM=27.010899", "Thr->Val substitution": "NT=Thr->Val;AC=1210;CF=H(2) C O(-1);MM=-1.979265", "Thr->Trp substitution": "NT=Thr->Trp;AC=1211;CF=H(3) C(7) N O(-1);MM=85.031634", "Thr->Tyr substitution": "NT=Thr->Tyr;AC=1212;CF=H(2) C(5);MM=62.01565", "Val->Cys substitution": "NT=Val->Cys;AC=1213;CF=H(-4) C(-2) S;MM=3.940771", "Val->His substitution": "NT=Val->His;AC=1214;CF=H(-2) C N(2);MM=37.990498", "Val->Lys substitution": "NT=Val->Lys;AC=1215;CF=H(3) C N;MM=29.026549", "Val->Asn substitution": "NT=Val->Asn;AC=1216;CF=H(-3) C(-1) N O;MM=14.974514", "Val->Pro substitution": "NT=Val->Pro;AC=1217;CF=H(-2);MM=-2.01565", "Val->Gln substitution": "NT=Val->Gln;AC=1218;CF=H(-1) N O;MM=28.990164", "Val->Arg substitution": "NT=Val->Arg;AC=1219;CF=H(3) C N(3);MM=57.032697", "Val->Ser substitution": "NT=Val->Ser;AC=1220;CF=H(-4) C(-2) O;MM=-12.036386", "Val->Thr substitution": "NT=Val->Thr;AC=1221;CF=H(-2) C(-1) O;MM=1.979265", "Val->Trp substitution": "NT=Val->Trp;AC=1222;CF=H C(6) N;MM=87.010899", "Val->Tyr substitution": "NT=Val->Tyr;AC=1223;CF=C(4) O;MM=63.994915", "Trp->Ala substitution": "NT=Trp->Ala;AC=1224;CF=H(-5) C(-8) N(-1);MM=-115.042199", "Trp->Asp substitution": "NT=Trp->Asp;AC=1225;CF=H(-5) C(-7) N(-1) O(2);MM=-71.05237", "Trp->Glu substitution": "NT=Trp->Glu;AC=1226;CF=H(-3) C(-6) N(-1) O(2);MM=-57.03672", "Trp->Phe substitution": "NT=Trp->Phe;AC=1227;CF=H(-1) C(-2) N(-1);MM=-39.010899", "Trp->His substitution": "NT=Trp->His;AC=1228;CF=H(-3) C(-5) N;MM=-49.020401", "Trp->Lys substitution": "NT=Trp->Lys;AC=1229;CF=H(2) C(-5);MM=-57.98435", "Trp->Met substitution": "NT=Trp->Met;AC=1230;CF=H(-1) C(-6) N(-1) S;MM=-55.038828", "Trp->Asn substitution": "NT=Trp->Asn;AC=1231;CF=H(-4) C(-7) O;MM=-72.036386", "Trp->Pro substitution": "NT=Trp->Pro;AC=1232;CF=H(-3) C(-6) N(-1);MM=-89.026549", "Trp->Gln substitution": "NT=Trp->Gln;AC=1233;CF=H(-2) C(-6) O;MM=-58.020735", "Trp->Thr substitution": "NT=Trp->Thr;AC=1234;CF=H(-3) C(-7) N(-1) O;MM=-85.031634", "Trp->Val substitution": "NT=Trp->Val;AC=1235;CF=H(-1) C(-6) N(-1);MM=-87.010899", "Trp->Tyr substitution": "NT=Trp->Tyr;AC=1236;CF=H(-1) C(-2) N(-1) O;MM=-23.015984", "Tyr->Ala substitution": "NT=Tyr->Ala;AC=1237;CF=H(-4) C(-6) O(-1);MM=-92.026215", "Tyr->Glu substitution": "NT=Tyr->Glu;AC=1238;CF=H(-2) C(-4) O;MM=-34.020735", "Tyr->Gly substitution": "NT=Tyr->Gly;AC=1239;CF=H(-6) C(-7) O(-1);MM=-106.041865", "Tyr->Lys substitution": "NT=Tyr->Lys;AC=1240;CF=H(3) C(-3) N O(-1);MM=-34.968366", "Tyr->Met substitution": "NT=Tyr->Met;AC=1241;CF=C(-4) O(-1) S;MM=-32.022844", "Tyr->Pro substitution": "NT=Tyr->Pro;AC=1242;CF=H(-2) C(-4) O(-1);MM=-66.010565", "Tyr->Gln substitution": "NT=Tyr->Gln;AC=1243;CF=H(-1) C(-4) N;MM=-35.004751", "Tyr->Arg substitution": "NT=Tyr->Arg;AC=1244;CF=H(3) C(-3) N(3) O(-1);MM=-6.962218", "Tyr->Thr substitution": "NT=Tyr->Thr;AC=1245;CF=H(-2) C(-5);MM=-62.01565", "Tyr->Val substitution": "NT=Tyr->Val;AC=1246;CF=C(-4) O(-1);MM=-63.994915", "Tyr->Trp substitution": "NT=Tyr->Trp;AC=1247;CF=H C(2) N O(-1);MM=23.015984", "Tyr->Leu/Ile substitution": "NT=Tyr->Xle;AC=1248;CF=H(2) C(-3) O(-1);MM=-49.979265", "Azidohomoalanine coupled to reductively cleaved tag": "NT=AHA-SS;AC=1249;CF=H(9) C(7) N(5) O(2);MM=195.075625", "carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine": "NT=AHA-SS_CAM;AC=1250;CF=H(12) C(9) N(6) O(3);MM=252.097088", "Sulfo-SBED Label Photoreactive Biotin Crosslinker": "NT=Biotin:Thermo-33033;AC=1251;CF=H(36) C(25) N(6) O(4) S(2);MM=548.223945", "Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen": "NT=Biotin:Thermo-33033-H;AC=1252;CF=H(34) C(25) N(6) O(4) S(2);MM=546.208295", "S-(2-monomethylsuccinyl) cysteine": "NT=2-monomethylsuccinyl;AC=1253;CF=H(6) C(5) O(4);MM=130.026609", "o-toluene": "NT=Saligenin;AC=1254;CF=H(6) C(7) O;MM=106.041865", "o-toluyl-phosphorylation": "NT=Cresylphosphate;AC=1255;CF=H(7) C(7) O(3) P;MM=170.013281", "Cresyl-Saligenin-phosphorylation": "NT=CresylSaligeninPhosphate;AC=1256;CF=H(13) C(14) O(4) P;MM=276.055146", "Ub Bromide probe addition": "NT=Ub-Br2;AC=1257;CF=H(8) C(4) N(2) O;MM=100.063663", "Ubiquitin vinylmethylester": "NT=Ub-VME;AC=1258;CF=H(12) C(7) N(2) O(3);MM=172.084792", "Ub Fluorescein probe addition": "NT=Ub-fluorescein;AC=1261;CF=H(29) C(31) N(6) O(7);MM=597.209772", "S-(2-dimethylsuccinyl) cysteine": "NT=2-dimethylsuccinyl;AC=1262;CF=H(8) C(6) O(4);MM=144.042259", "Addition of Glycine": "NT=Gly;AC=1263;CF=H(3) C(2) N O;MM=57.021464", "addition of GGE": "NT=pupylation;AC=1264;CF=H(13) C(9) N(3) O(5);MM=243.085521", "13C4 Methionine label": "NT=Label:13C(4);AC=1266;CF=C(-4) 13C(4);MM=4.013419", "Oxidised 13C4 labelled Methionine": "NT=Label:13C(4)+Oxidation;AC=1267;CF=C(-4) 13C(4) O;MM=20.008334", "N-Homocysteine thiolactone": "NT=HCysThiolactone;AC=1270;CF=H(7) C(4) N O S;MM=117.024835", "S-homocysteinylation": "NT=HCysteinyl;AC=1271;CF=H(7) C(4) N O(2) S;MM=133.019749", "Side reaction of HisTag": "NT=UgiJoullie;AC=1276;CF=H(60) C(47) N(23) O(10);MM=1106.48935", "Cys modified with dipy ligand": "NT=Dipyridyl;AC=1277;CF=H(11) C(13) N(3) O;MM=225.090212", "Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction": "NT=Furan;AC=1278;CF=H(2) C(4) O;MM=66.010565", "Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction": "NT=Difuran;AC=1279;CF=H(4) C(8) O(2);MM=132.021129", "1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine": "NT=BMP-piperidinol;AC=1281;CF=H(17) C(18) N O;MM=263.131014", "Side reaction of PG with Side chain of aspartic or glutamic acid": "NT=UgiJoullieProGly;AC=1282;CF=H(10) C(7) N(2) O(2);MM=154.074228", "Side reaction of PGPG with Side chain of aspartic or glutamic acid": "NT=UgiJoullieProGlyProGly;AC=1283;CF=H(20) C(14) N(4) O(4);MM=308.148455", "Glycosylation with IME linked Hex(2) NeuAc": "NT=IMEHex(2)NeuAc(1);AC=1286;CF=H(3) C(2) N S Hex(2) NeuAc;MM=688.199683", "Loss of arginine due to transpeptidation": "NT=Arg-loss;AC=1287;CF=H(-12) C(-6) N(-4) O(-1);MM=-156.101111", "Addition of arginine due to transpeptidation": "NT=Arg;AC=1288;CF=H(12) C(6) N(4) O;MM=156.101111", "Double Carbamidomethylation": "NT=Dicarbamidomethyl;AC=1290;CF=H(6) C(4) N(2) O(2);MM=114.042927", "Dimethyl-Medium": "NT=Dimethyl:2H(6);AC=1291;CF=H(-2) 2H(6) C(2);MM=34.068961", "SUMOylation leaving GlyGlyGln": "NT=GGQ;AC=1292;CF=H(14) C(9) N(4) O(4);MM=242.101505", "SUMOylation leaving GlnThrGlyGly": "NT=QTGG;AC=1293;CF=H(21) C(13) N(5) O(6);MM=343.149184", "13C3 label for SILAC": "NT=Label:13C(3);AC=1296;CF=C(-3) 13C(3);MM=3.010064", "SILAC or AQUA label": "NT=Label:13C(3)15N(1);AC=1297;CF=C(-3) 13C(3) N(-1) 15N;MM=4.007099", "13C4 15N1 label for SILAC": "NT=Label:13C(4)15N(1);AC=1298;CF=C(-4) 13C(4) N(-1) 15N;MM=5.010454", "2H(10) label": "NT=Label:2H(10);AC=1299;CF=H(-10) 2H(10);MM=10.062767", "Addition of lysine due to transpeptidation": "NT=Lys;AC=1301;CF=H(12) C(6) N(2) O;MM=128.094963", "mTRAQ heavy": "NT=mTRAQ:13C(6)15N(2);AC=1302;CF=H(12) C 13C(6) 15N(2) O;MM=148.109162", "N-acetyl neuraminic acid": "NT=NeuAc;AC=1303;CF=NeuAc;MM=291.095417", "N-glycoyl neuraminic acid": "NT=NeuGc;AC=1304;CF=NeuGc;MM=307.090331", "Reduced acrolein addition +58": "NT=Delta:H(6)C(3)O(1);AC=1312;CF=H(6) C(3) O;MM=58.041865", "Reduced acrolein addition +96": "NT=Delta:H(8)C(6)O(1);AC=1313;CF=H(8) C(6) O;MM=96.057515", "biotin hydrazide labeled acrolein addition +298": "NT=biotinAcrolein298;AC=1314;CF=H(22) C(13) N(4) O(2) S;MM=298.146347", "3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one": "NT=MM-diphenylpentanone;AC=1315;CF=H(19) C(18) N O;MM=265.146664", "2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one": "NT=EHD-diphenylpentanone;AC=1317;CF=H(18) C(18) O(2);MM=266.13068", "Maleimide-Biotin + 2Water": "NT=Biotin:Thermo-21901+2H2O;AC=1320;CF=H(39) C(23) N(5) O(9) S;MM=561.246849", "Accurate mass for DiLeu 115 isobaric tag": "NT=DiLeu4plex115;AC=1321;CF=H(15) C(7) 13C 15N 18O;MM=145.12", "Accurate mass for DiLeu 116 isobaric tag": "NT=DiLeu4plex;AC=1322;CF=H(13) 2H(2) C(8) N 18O;MM=145.132163", "Accurate mass for DiLeu 117 isobaric tag": "NT=DiLeu4plex117;AC=1323;CF=H(13) 2H(2) C(7) 13C 15N O;MM=145.128307", "Accurate mass for DiLeu 118 isobaric tag": "NT=DiLeu4plex118;AC=1324;CF=H(11) 2H(4) C(8) N O;MM=145.140471", "N-ethylmaleimideSulfur": "NT=NEMsulfur;AC=1326;CF=H(7) C(6) N O(2) S;MM=157.019749", "N-ethylmaleimideSulfurWater": "NT=NEMsulfurWater;AC=1328;CF=H(9) C(6) N O(3) S;MM=175.030314", "BisANS with loss of both sulfonates": "NT=bisANS-sulfonates;AC=1330;CF=H(22) C(32) N(2);MM=434.178299", "Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB)": "NT=DNCB_hapten;AC=1331;CF=H(2) C(6) N(2) O(4);MM=166.001457", "Biotin-PEG11-maleimide": "NT=Biotin:Thermo-21911;AC=1340;CF=H(71) C(41) N(5) O(16) S;MM=921.461652", "Native iodoacetyl Tandem Mass Tag\u00ae": "NT=iodoTMT;AC=1341;CF=H(28) C(16) N(4) O(3);MM=324.216141", "Sixplex iodoacetyl Tandem Mass Tag\u00ae": "NT=iodoTMT6plex;AC=1342;CF=H(28) C(12) 13C(4) N(3) 15N O(3);MM=329.226595", "reaction with phenyl salicylate (PS)": "NT=PS_Hapten;AC=1345;CF=H(4) C(7) O(2);MM=120.021129", "Cy3 Maleimide mono-Reactive dye": "NT=Cy3-maleimide;AC=1348;CF=H(45) C(37) N(4) O(9) S(2);MM=753.262796", "modification of the lysine side chain from NH2 to guanidine with a H removed in favor of a benzyl group": "NT=benzylguanidine;AC=1349;CF=H(8) C(8) N(2);MM=132.068748", "A fixed +1 charge tag attached to the N-terminus of peptides": "NT=CarboxymethylDMAP;AC=1350;CF=H(10) C(9) N(2) O;MM=162.079313", "Formation of five membered aromatic heterocycle": "NT=azole;AC=1355;CF=H(-4) O(-1);MM=-20.026215", "phosphate-ribosylation": "NT=phosphoRibosyl;AC=1356;CF=H(9) C(5) O(7) P;MM=212.00859", "D5 N-ethylmaleimide+water on cysteines": "NT=NEM:2H(5)+H2O;AC=1358;CF=H(4) 2H(5) C(6) N O(3);MM=148.089627", "Crotonylation": "NT=Crotonyl;AC=1363;CF=H(4) C(4) O;MM=68.026215", "O-ethyl, N-dimethyl phosphate": "NT=O-Et-N-diMePhospho;AC=1364;CF=H(10) C(4) N O(2) P;MM=135.044916", "Hex1dHex1": "NT=dHex(1)Hex(1);AC=1367;CF=dHex Hex;MM=308.110732", "3-fold methylated lysine labelled with Acetyl_heavy": "NT=Methyl:2H(3)+Acetyl:2H(3);AC=1368;CF=H(-2) 2H(6) C(3) O;MM=62.063875", "Oxidised 2H(3) labelled Methionine": "NT=Label:2H(3)+Oxidation;AC=1370;CF=H(-3) 2H(3) O;MM=19.013745", "3-fold methylation with deuterated methyl groups": "NT=Trimethyl:2H(9);AC=1371;CF=H(-3) 2H(9) C(3);MM=51.103441", "heavy acetylation": "NT=Acetyl:13C(2);AC=1372;CF=H(2) 13C(2) O;MM=44.017274", "Hex2dHex1": "NT=dHex(1)Hex(2);AC=1375;CF=dHex Hex(2);MM=470.163556", "Hex3dHex1": "NT=dHex(1)Hex(3);AC=1376;CF=dHex Hex(3);MM=632.216379", "Hex4dHex1": "NT=dHex(1)Hex(4);AC=1377;CF=dHex Hex(4);MM=794.269203", "Hex5dHex1": "NT=dHex(1)Hex(5);AC=1378;CF=dHex Hex(5);MM=956.322026", "Hex6dHex1": "NT=dHex(1)Hex(6);AC=1379;CF=dHex Hex(6);MM=1118.37485", "reaction with methyl vinyl sulfone": "NT=methylsulfonylethyl;AC=1380;CF=H(6) C(3) O(2) S;MM=106.00885", "reaction with ethyl vinyl sulfone": "NT=ethylsulfonylethyl;AC=1381;CF=H(8) C(4) O(2) S;MM=120.0245", "reaction with phenyl vinyl sulfone": "NT=phenylsulfonylethyl;AC=1382;CF=H(8) C(8) O(2) S;MM=168.0245", "PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linkage": "NT=PyridoxalPhosphateH2;AC=1383;CF=H(10) C(8) N O(5) P;MM=231.02966", "methionine oxidation to homocysteic acid": "NT=Homocysteic_acid;AC=1384;CF=H(-2) C(-1) O(3);MM=33.969094", "ADP-ribosylation followed by conversion to hydroxamic acid via hydroxylamine": "NT=Hydroxamic_acid;AC=1385;CF=H N;MM=15.010899", "Modification by hydroxylated mechloroethamine (HN-2)": "NT=HN2_mustard;AC=1388;CF=H(11) C(5) N O;MM=101.084064", "Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3)": "NT=HN3_mustard;AC=1389;CF=H(13) C(6) N O(2);MM=131.094629", "N-ethylmaleimide on cysteine sulfenic acid": "NT=Oxidation+NEM;AC=1390;CF=H(7) C(6) N O(3);MM=141.042593", "fluorescein-hexanoate-NHS hydrolysis": "NT=NHS-fluorescein;AC=1391;CF=H(21) C(27) N O(7);MM=471.131802", "Representative mass and accurate mass for 114": "NT=DiART6plex;AC=1392;CF=H(20) C(7) 13C(4) N 15N O(2);MM=217.162932", "Accurate mass for DiART6plex 115": "NT=DiART6plex115;AC=1393;CF=H(20) C(8) 13C(3) 15N(2) O(2);MM=217.156612", "Accurate mass for DiART6plex 116 and 119": "NT=DiART6plex116/119;AC=1394;CF=H(18) 2H(2) C(9) 13C(2) N 15N O(2);MM=217.168776", "Accurate mass for DiART6plex 117": "NT=DiART6plex117;AC=1395;CF=H(18) 2H(2) C(10) 13C 15N(2) O(2);MM=217.162456", "Accurate mass for DiART6plex 118": "NT=DiART6plex118;AC=1396;CF=H(18) 2H(2) C(8) 13C(3) N(2) O(2);MM=217.175096", "iodoacetanilide derivative": "NT=Iodoacetanilide;AC=1397;CF=H(7) C(8) N O;MM=133.052764", "13C labelled iodoacetanilide derivative": "NT=Iodoacetanilide:13C(6);AC=1398;CF=H(7) C(2) 13C(6) N O;MM=139.072893", "Diaminopimelic acid-DSP monolinked": "NT=Dap-DSP;AC=1399;CF=H(20) C(13) N(2) O(6) S(2);MM=364.076278", "N-Acetylmuramic acid": "NT=MurNAc;AC=1400;CF=O(-1) NeuAc;MM=275.100502", "Sumoylation by SUMO-1 after Cyanogen bromide (CNBr) cleavage": "NT=EEEDVIEVYQEQTGG;AC=1405;CF=H(107) C(72) N(17) O(31);MM=1705.73189", "Sumoylation by SUMO-2/3 after Cyanogen bromide (CNBr) cleavage": "NT=EDEDTIDVFQQQTGG;AC=1406;CF=H(102) C(69) N(18) O(30);MM=1662.700924", "A2G2S2/G2S2": "NT=Hex(5)HexNAc(4)NeuAc(2);AC=1408;CF=Hex(5) HexNAc(4) NeuAc(2);MM=2204.772441", "A2G2S1/G2S1": "NT=Hex(5)HexNAc(4)NeuAc(1);AC=1409;CF=Hex(5) HexNAc(4) NeuAc;MM=1913.677025", "FA2G2S1/G2FS1": "NT=dHex(1)Hex(5)HexNAc(4)NeuAc(1);AC=1410;CF=dHex Hex(5) HexNAc(4) NeuAc;MM=2059.734933", "FA2G2S2/G2FS2": "NT=dHex(1)Hex(5)HexNAc(4)NeuAc(2);AC=1411;CF=dHex Hex(5) HexNAc(4) NeuAc(2);MM=2350.83035", "O3S1HexNAc1": "NT=s-GlcNAc;AC=1412;CF=O(3) S HexNAc;MM=283.036187", "H1O3P1Hex2": "NT=PhosphoHex(2);AC=1413;CF=H O(3) P Hex(2);MM=404.071978", "3-fold methylation with fully labelled methyl groups": "NT=Trimethyl:13C(3)2H(9);AC=1414;CF=H(-3) 2H(9) 13C(3);MM=54.113505", "Loss of ammonia (15N)": "NT=15N-oxobutanoic;AC=1419;CF=H(-3) 15N(-1);MM=-18.023584", "spermine adduct": "NT=spermine;AC=1420;CF=H(23) C(10) N(3);MM=185.189198", "spermidine adduct": "NT=spermidine;AC=1421;CF=H(16) C(7) N(2);MM=128.131349", "Biotin_PEG4": "NT=Biotin:Thermo-21330;AC=1423;CF=H(35) C(21) N(3) O(7) S;MM=473.219571", "Hex Pent": "NT=Hex(1)Pent(1);AC=1426;CF=Pent Hex;MM=294.095082", "Hex HexA": "NT=Hex(1)HexA(1);AC=1427;CF=Hex HexA;MM=338.084912", "Hex Pent(2)": "NT=Hex(1)Pent(2);AC=1428;CF=Pent(2) Hex;MM=426.137341", "Hex HexNAc Phos": "NT=Hex(1)HexNAc(1)Phos(1);AC=1429;CF=H O(3) P Hex HexNAc;MM=445.098527", "Hex HexNAc Sulf": "NT=Hex(1)HexNAc(1)Sulf(1);AC=1430;CF=O(3) S Hex HexNAc;MM=445.089011", "Hex NeuAc ---OR--- HexNAc Kdn": "NT=Hex(1)NeuAc(1);AC=1431;CF=Hex NeuAc;MM=453.14824", "Hex NeuGc": "NT=Hex(1)NeuGc(1);AC=1432;CF=Hex NeuGc;MM=469.143155", "HexNAc NeuAc": "NT=HexNAc(1)NeuAc(1);AC=1434;CF=HexNAc NeuAc;MM=494.174789", "HexNAc NeuGc": "NT=HexNAc(1)NeuGc(1);AC=1435;CF=HexNAc NeuGc;MM=510.169704", "Hex HexNAc dHex Me": "NT=Hex(1)HexNAc(1)dHex(1)Me(1);AC=1436;CF=Me dHex Hex HexNAc;MM=525.205755", "Hex HexNAc dHex Me(2)": "NT=Hex(1)HexNAc(1)dHex(1)Me(2);AC=1437;CF=Me(2) dHex Hex HexNAc;MM=539.221405", "Hex(2) HexNAc": "NT=Hex(2)HexNAc(1);AC=1438;CF=Hex(2) HexNAc;MM=527.18502", "Hex HexA HexNAc": "NT=Hex(1)HexA(1)HexNAc(1);AC=1439;CF=Hex HexA HexNAc;MM=541.164284", "Hex(2) HexNAc Me": "NT=Hex(2)HexNAc(1)Me(1);AC=1440;CF=Me Hex(2) HexNAc;MM=541.20067", "Hex Pent(3)": "NT=Hex(1)Pent(3);AC=1441;CF=Pent(3) Hex;MM=558.1796", "Hex NeuAc Pent": "NT=Hex(1)NeuAc(1)Pent(1);AC=1442;CF=Pent Hex NeuAc;MM=585.190499", "Hex(2) HexNAc Sulf": "NT=Hex(2)HexNAc(1)Sulf(1);AC=1443;CF=O(3) S Hex(2) HexNAc;MM=607.141834", "Hex(2) NeuAc ---OR--- Hex HexNAc Kdn": "NT=Hex(2)NeuAc(1);AC=1444;CF=Hex(2) NeuAc;MM=615.201064", "Hex2 dHex2": "NT=dHex(2)Hex(2);AC=1445;CF=dHex(2) Hex(2);MM=616.221465", "dHex Hex(2) HexA": "NT=dHex(1)Hex(2)HexA(1);AC=1446;CF=dHex Hex(2) HexA;MM=646.195644", "Hex HexNAc(2) Sulf": "NT=Hex(1)HexNAc(2)Sulf(1);AC=1447;CF=O(3) S Hex HexNAc(2);MM=648.168383", "dHex Hex(2) HexNAc(2) Pent": "NT=dHex(1)Hex(2)HexNAc(2)Pent(1);AC=1449;CF=dHex(1) Hex(2) HexNAc(2) Pent(1);MM=1008.36456", "Hex(2) HexNAc(2) NeuAc ---OR--- dHex Hex HexNAc(2) NeuGc": "NT=Hex(2)HexNAc(2)NeuAc(1);AC=1450;CF=Hex(2) HexNAc(2) NeuAc;MM=1021.359809", "Hex(3) HexNAc(2) Pent": "NT=Hex(3)HexNAc(2)Pent(1);AC=1451;CF=Hex(3) HexNAc(2) Pent(1);MM=1024.359475", "Hex(4) HexNAc(2)": "NT=Hex(4)HexNAc(2);AC=1452;CF=Hex(4) HexNAc(2);MM=1054.370039", "dHex Hex(4) HexNAc Pent": "NT=dHex(1)Hex(4)HexNAc(1)Pent(1);AC=1453;CF=dHex(1) Hex(4) HexNAc(1) Pent(1);MM=1129.390834", "dHex Hex(3) HexNAc(2) Pent": "NT=dHex(1)Hex(3)HexNAc(2)Pent(1);AC=1454;CF=dHex(1) Hex(3) HexNAc(2) Pent(1);MM=1170.417383", "Hex(3) HexNAc(2) NeuAc": "NT=Hex(3)HexNAc(2)NeuAc(1);AC=1455;CF=Hex(3) HexNAc(2) NeuAc(1);MM=1183.412632", "Hex(4) HexNAc(2) Pent": "NT=Hex(4)HexNAc(2)Pent(1);AC=1456;CF=Hex(4) HexNAc(2) Pent(1);MM=1186.412298", "Hex(3) HexNAc(3) Pent": "NT=Hex(3)HexNAc(3)Pent(1);AC=1457;CF=Hex(3) HexNAc(3) Pent(1);MM=1227.438847", "Hex(5) HexNAc(2) Phos": "NT=Hex(5)HexNAc(2)Phos(1);AC=1458;CF=H O(3) P Hex(5) HexNAc(2);MM=1296.389194", "dHex Hex(4) HexNAc(2) Pent": "NT=dHex(1)Hex(4)HexNAc(2)Pent(1);AC=1459;CF=dHex(1) Hex(4) HexNAc(2) Pent(1);MM=1332.470207", "Hex(7) HexNAc": "NT=Hex(7)HexNAc(1);AC=1460;CF=Hex(7) HexNAc(1);MM=1337.449137", "Hex(4) HexNAc(2) NeuAc ---OR--- Hex(3) HexNAc(2) dHex NeuGc": "NT=Hex(4)HexNAc(2)NeuAc(1);AC=1461;CF=Hex(4) HexNAc(2) NeuAc;MM=1345.465456", "dHex Hex(5) HexNAc(2)": "NT=dHex(1)Hex(5)HexNAc(2);AC=1462;CF=dHex(1) Hex(5) HexNAc(2);MM=1362.480772", "dHex Hex(3) HexNAc(3) Pent": "NT=dHex(1)Hex(3)HexNAc(3)Pent(1);AC=1463;CF=dHex(1) Hex(3) HexNAc(3) Pent(1);MM=1373.496756", "Hex(3) HexNAc(4) Sulf": "NT=Hex(3)HexNAc(4)Sulf(1);AC=1464;CF=O(3) S Hex(3) HexNAc(4);MM=1378.432776", "M6/Man6": "NT=Hex(6)HexNAc(2);AC=1465;CF=Hex(6) HexNAc(2);MM=1378.475686", "Hex(4) HexNAc(3) Pent": "NT=Hex(4)HexNAc(3)Pent(1);AC=1466;CF=Hex(4) HexNAc(3) Pent(1);MM=1389.491671", "dHex Hex(4) HexNAc(3)": "NT=dHex(1)Hex(4)HexNAc(3);AC=1467;CF=dHex(1) Hex(4) HexNAc(3);MM=1403.507321", "Hex(5) HexNAc(3)": "NT=Hex(5)HexNAc(3);AC=1468;CF=Hex(5) HexNAc(3);MM=1419.502235", "Hex(3) HexNAc(4) Pent": "NT=Hex(3)HexNAc(4)Pent(1);AC=1469;CF=Hex(3) HexNAc(4) Pent(1);MM=1430.51822", "Hex(6) HexNAc(2) Phos": "NT=Hex(6)HexNAc(2)Phos(1);AC=1470;CF=H O(3) P Hex(6) HexNAc(2);MM=1458.442017", "dHex Hex(4) HexNAc(3) Sulf": "NT=dHex(1)Hex(4)HexNAc(3)Sulf(1);AC=1471;CF=O(3) S dHex Hex(4) HexNAc(3);MM=1483.464135", "dHex Hex(5) HexNAc(2) Pent": "NT=dHex(1)Hex(5)HexNAc(2)Pent(1);AC=1472;CF=dHex(1) Hex(5) HexNAc(2) Pent(1);MM=1494.52303", "Hex(8) HexNAc": "NT=Hex(8)HexNAc(1);AC=1473;CF=Hex(8) HexNAc(1);MM=1499.501961", "dHex Hex(3) HexNAc(3) Pent(2)": "NT=dHex(1)Hex(3)HexNAc(3)Pent(2);AC=1474;CF=dHex(1) Hex(3) HexNAc(3) Pent(2);MM=1505.539015", "dHex(2) Hex(3) HexNAc(3) Pent": "NT=dHex(2)Hex(3)HexNAc(3)Pent(1);AC=1475;CF=dHex(2) Hex(3) HexNAc(3) Pent(1);MM=1519.554665", "dHex Hex(3) HexNAc(4) Sulf": "NT=dHex(1)Hex(3)HexNAc(4)Sulf(1);AC=1476;CF=O(3) S dHex Hex(3) HexNAc(4);MM=1524.490684", "dHex Hex(6) HexNAc(2)": "NT=dHex(1)Hex(6)HexNAc(2);AC=1477;CF=dHex(1) Hex(6) HexNAc(2);MM=1524.533595", "dHex Hex(4) HexNAc(3) Pent": "NT=dHex(1)Hex(4)HexNAc(3)Pent(1);AC=1478;CF=dHex(1) Hex(4) HexNAc(3) Pent(1);MM=1535.549579", "Hex(4) HexNAc(4) Sulf": "NT=Hex(4)HexNAc(4)Sulf(1);AC=1479;CF=O(3) S Hex(4) HexNAc(4);MM=1540.485599", "M7/Man7": "NT=Hex(7)HexNAc(2);AC=1480;CF=Hex(7) HexNAc(2);MM=1540.52851", "dHex(2) Hex(4) HexNAc(3)": "NT=dHex(2)Hex(4)HexNAc(3);AC=1481;CF=dHex(2) Hex(4) HexNAc(3);MM=1549.56523", "Hex(5) HexNAc(3) Pent": "NT=Hex(5)HexNAc(3)Pent(1);AC=1482;CF=Hex(5) HexNAc(3) Pent(1);MM=1551.544494", "Hex(4) HexNAc(3) NeuGc": "NT=Hex(4)HexNAc(3)NeuGc(1);AC=1483;CF=Hex(4) HexNAc(3) NeuGc(1);MM=1564.539743", "dHex Hex(5) HexNAc(3)": "NT=dHex(1)Hex(5)HexNAc(3);AC=1484;CF=dHex(1) Hex(5) HexNAc(3);MM=1565.560144", "dHex Hex(3) HexNAc(4) Pent": "NT=dHex(1)Hex(3)HexNAc(4)Pent(1);AC=1485;CF=dHex(1) Hex(3) HexNAc(4) Pent(1);MM=1576.576129", "Hex(3) HexNAc(5) Sulf": "NT=Hex(3)HexNAc(5)Sulf(1);AC=1486;CF=O(3) S Hex(3) HexNAc(5);MM=1581.512148", "Hex(6) HexNAc(3)": "NT=Hex(6)HexNAc(3);AC=1487;CF=Hex(6) HexNAc(3);MM=1581.555059", "Hex(3) HexNAc(4) NeuAc ---OR--- Hex(2) HexNAc(4) dHex NeuGc": "NT=Hex(3)HexNAc(4)NeuAc(1);AC=1488;CF=Hex(3) HexNAc(4) NeuAc;MM=1589.571378", "Hex(4) HexNAc(4) Pent": "NT=Hex(4)HexNAc(4)Pent(1);AC=1489;CF=Hex(4) HexNAc(4) Pent(1);MM=1592.571043", "Hex(7) HexNAc(2) Phos": "NT=Hex(7)HexNAc(2)Phos(1);AC=1490;CF=H O(3) P Hex(7) HexNAc(2);MM=1620.494841", "Hex(4) HexNAc(4) Me(2) Pent": "NT=Hex(4)HexNAc(4)Me(2)Pent(1);AC=1491;CF=Hex(4) HexNAc(4) Me(2) Pent(1);MM=1620.602343", "dHex Hex(3) HexNAc(3) Pent(3) ---OR--- Hex(4) HexNAc(2) dHex(2) NeuAc": "NT=dHex(1)Hex(3)HexNAc(3)Pent(3);AC=1492;CF=Pent(3) dHex Hex(3) HexNAc(3);MM=1637.581274", "dHex Hex(5) HexNAc(3) Sulf": "NT=dHex(1)Hex(5)HexNAc(3)Sulf(1);AC=1493;CF=O(3) S dHex Hex(5) HexNAc(3);MM=1645.516959", "dHex(2) Hex(3) HexNAc(3) Pent(2)": "NT=dHex(2)Hex(3)HexNAc(3)Pent(2);AC=1494;CF=dHex(2) Hex(3) HexNAc(3) Pent(2);MM=1651.596924", "Hex(6) HexNAc(3) Phos": "NT=Hex(6)HexNAc(3)Phos(1);AC=1495;CF=H O(3) P Hex(6) HexNAc(3);MM=1661.52139", "Hex(4) HexNAc(5)": "NT=Hex(4)HexNAc(5);AC=1496;CF=Hex(4) HexNAc(5);MM=1663.608157", "dHex(3) Hex(3) HexNAc(3) Pent": "NT=dHex(3)Hex(3)HexNAc(3)Pent(1);AC=1497;CF=dHex(3) Hex(3) HexNAc(3) Pent(1);MM=1665.612574", "dHex(2) Hex(4) HexNAc(3) Pent": "NT=dHex(2)Hex(4)HexNAc(3)Pent(1);AC=1498;CF=dHex(2) Hex(4) HexNAc(3) Pent(1);MM=1681.607488", "dHex Hex(4) HexNAc(4) Sulf": "NT=dHex(1)Hex(4)HexNAc(4)Sulf(1);AC=1499;CF=O(3) S dHex Hex(4) HexNAc(4);MM=1686.543508", "dHex Hex(7) HexNAc(2)": "NT=dHex(1)Hex(7)HexNAc(2);AC=1500;CF=dHex(1) Hex(7) HexNAc(2);MM=1686.586419", "dHex Hex(4) HexNAc(3) NeuAc ---OR--- dHex(2) Hex(3) HexNAc(3) NeuGc": "NT=dHex(1)Hex(4)HexNAc(3)NeuAc(1);AC=1501;CF=dHex Hex(4) HexNAc(3) NeuAc;MM=1694.602737", "Hex(7) HexNAc(2) Phos(2)": "NT=Hex(7)HexNAc(2)Phos(2);AC=1502;CF=H(2) O(6) P(2) Hex(7) HexNAc(2);MM=1700.461172", "Hex(5) HexNAc(4) Sulf": "NT=Hex(5)HexNAc(4)Sulf(1);AC=1503;CF=O(3) S Hex(5) HexNAc(4);MM=1702.538423", "M8/Man8": "NT=Hex(8)HexNAc(2);AC=1504;CF=Hex(8) HexNAc(2);MM=1702.581333", "dHex Hex(3) HexNAc(4) Pent(2)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(2);AC=1505;CF=dHex(1) Hex(3) HexNAc(4) Pent(2);MM=1708.618387", "dHex Hex(4) HexNAc(3) NeuGc ---OR--- Hex(5) HexNAc(3) NeuAc": "NT=dHex(1)Hex(4)HexNAc(3)NeuGc(1);AC=1506;CF=dHex Hex(4) HexNAc(3) NeuGc;MM=1710.597652", "dHex(2) Hex(3) HexNAc(4) Pent": "NT=dHex(2)Hex(3)HexNAc(4)Pent(1);AC=1507;CF=dHex(2) Hex(3) HexNAc(4) Pent(1);MM=1722.634037", "dHex Hex(3) HexNAc(5) Sulf": "NT=dHex(1)Hex(3)HexNAc(5)Sulf(1);AC=1508;CF=O(3) S dHex Hex(3) HexNAc(5);MM=1727.570057", "dHex Hex(6) HexNAc(3)": "NT=dHex(1)Hex(6)HexNAc(3);AC=1509;CF=dHex(1) Hex(6) HexNAc(3);MM=1727.612968", "dHex Hex(3) HexNAc(4) NeuAc": "NT=dHex(1)Hex(3)HexNAc(4)NeuAc(1);AC=1510;CF=dHex(1) Hex(3) HexNAc(4) NeuAc(1);MM=1735.629286", "dHex(3) Hex(3) HexNAc(4)": "NT=dHex(3)Hex(3)HexNAc(4);AC=1511;CF=dHex(3) Hex(3) HexNAc(4);MM=1736.649688", "dHex Hex(4) HexNAc(4) Pent": "NT=dHex(1)Hex(4)HexNAc(4)Pent(1);AC=1512;CF=dHex(1) Hex(4) HexNAc(4) Pent(1);MM=1738.628952", "Hex(4) HexNAc(5) Sulf": "NT=Hex(4)HexNAc(5)Sulf(1);AC=1513;CF=O(3) S Hex(4) HexNAc(5);MM=1743.564972", "Hex(7) HexNAc(3)": "NT=Hex(7)HexNAc(3);AC=1514;CF=Hex(7) HexNAc(3);MM=1743.607882", "dHex Hex(4) HexNAc(3) NeuAc Sulf": "NT=dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1);AC=1515;CF=O(3) S dHex Hex(4) HexNAc(3) NeuAc;MM=1774.559552", "Hex(5) HexNAc(4) Me(2) Pent": "NT=Hex(5)HexNAc(4)Me(2)Pent(1);AC=1516;CF=Hex(5) HexNAc(4) Me(2) Pent(1);MM=1782.655167", "Hex(3) HexNAc(6) Sulf": "NT=Hex(3)HexNAc(6)Sulf(1);AC=1517;CF=O(3) S Hex(3) HexNAc(6);MM=1784.591521", "dHex Hex(6) HexNAc(3) Sulf": "NT=dHex(1)Hex(6)HexNAc(3)Sulf(1);AC=1518;CF=O(3) S dHex Hex(6) HexNAc(3);MM=1807.569782", "dHex Hex(4) HexNAc(5)": "NT=dHex(1)Hex(4)HexNAc(5);AC=1519;CF=dHex(1) Hex(4) HexNAc(5);MM=1809.666066", "dHex Hex(5) HexA HexNAc(3) Sulf": "NT=dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1);AC=1520;CF=O(3) S dHex Hex(5) HexA HexNAc(3);MM=1821.549047", "Hex(7) HexNAc(3) Phos": "NT=Hex(7)HexNAc(3)Phos(1);AC=1521;CF=H O(3) P Hex(7) HexNAc(3);MM=1823.574213", "Hex(6) HexNAc(4) Me(3)": "NT=Hex(6)HexNAc(4)Me(3);AC=1522;CF=Hex(6) HexNAc(4) Me(3);MM=1826.681382", "dHex(2) Hex(4) HexNAc(4) Sulf": "NT=dHex(2)Hex(4)HexNAc(4)Sulf(1);AC=1523;CF=O(3) S dHex(2) Hex(4) HexNAc(4);MM=1832.601417", "Hex(4) HexNAc(3) NeuAc(2)": "NT=Hex(4)HexNAc(3)NeuAc(2);AC=1524;CF=Hex(4) HexNAc(3) NeuAc(2);MM=1839.640245", "dHex Hex(3) HexNAc(4) Pent(3)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(3);AC=1525;CF=dHex(1) Hex(3) HexNAc(4) Pent(3);MM=1840.660646", "dHex(2) Hex(5) HexNAc(3) Pent": "NT=dHex(2)Hex(5)HexNAc(3)Pent(1);AC=1526;CF=dHex(2) Hex(5) HexNAc(3) Pent(1);MM=1843.660312", "dHex Hex(5) HexNAc(4) Sulf": "NT=dHex(1)Hex(5)HexNAc(4)Sulf(1);AC=1527;CF=O(3) S dHex Hex(5) HexNAc(4);MM=1848.596331", "dHex(2) Hex(3) HexNAc(4) Pent(2)": "NT=dHex(2)Hex(3)HexNAc(4)Pent(2);AC=1528;CF=dHex(2) Hex(3) HexNAc(4) Pent(2);MM=1854.676296", "dHex Hex(5) HexNAc(3) NeuAc": "NT=dHex(1)Hex(5)HexNAc(3)NeuAc(1);AC=1529;CF=dHex(1) Hex(5) HexNAc(3) NeuAc(1);MM=1856.655561", "Hex(3) HexNAc(6) Sulf(2)": "NT=Hex(3)HexNAc(6)Sulf(2);AC=1530;CF=O(6) S(2) Hex(3) HexNAc(6);MM=1864.548335", "M9/Man9": "NT=Hex(9)HexNAc(2);AC=1531;CF=Hex(9) HexNAc(2);MM=1864.634157", "Hex(4) HexNAc(6)": "NT=Hex(4)HexNAc(6);AC=1532;CF=Hex(4) HexNAc(6);MM=1866.68753", "dHex(3) Hex(3) HexNAc(4) Pent": "NT=dHex(3)Hex(3)HexNAc(4)Pent(1);AC=1533;CF=dHex(3) Hex(3) HexNAc(4) Pent(1);MM=1868.691946", "dHex Hex(5) HexNAc(3) NeuGc ---OR--- Hex(6) HexNAc(3) NeuAc": "NT=dHex(1)Hex(5)HexNAc(3)NeuGc(1);AC=1534;CF=dHex Hex(5) HexNAc(3) NeuGc;MM=1872.650475", "dHex(2) Hex(4) HexNAc(4) Pent": "NT=dHex(2)Hex(4)HexNAc(4)Pent(1);AC=1535;CF=dHex(2) Hex(4) HexNAc(4) Pent(1);MM=1884.686861", "dHex Hex(4) HexNAc(5) Sulf": "NT=dHex(1)Hex(4)HexNAc(5)Sulf(1);AC=1536;CF=O(3) S dHex Hex(4) HexNAc(5);MM=1889.62288", "dHex Hex(7) HexNAc(3)": "NT=dHex(1)Hex(7)HexNAc(3);AC=1537;CF=dHex(1) Hex(7) HexNAc(3);MM=1889.665791", "dHex Hex(5) HexNAc(4) Pent": "NT=dHex(1)Hex(5)HexNAc(4)Pent(1);AC=1538;CF=dHex(1) Hex(5) HexNAc(4) Pent(1);MM=1900.681776", "dHex Hex(5) HexA HexNAc(3) Sulf(2)": "NT=dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2);AC=1539;CF=O(6) S(2) dHex Hex(5) HexA HexNAc(3);MM=1901.505861", "Hex(3) HexNAc(7)": "NT=Hex(3)HexNAc(7);AC=1540;CF=Hex(3) HexNAc(7);MM=1907.714079", "dHex(2) Hex(5) HexNAc(4)": "NT=dHex(2)Hex(5)HexNAc(4);AC=1541;CF=dHex(2) Hex(5) HexNAc(4);MM=1914.697426", "dHex(2) Hex(4) HexNAc(3) NeuAc Sulf": "NT=dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1);AC=1542;CF=O(3) S dHex(2) Hex(4) HexNAc(3) NeuAc;MM=1920.617461", "dHex Hex(5) HexNAc(4) Sulf(2)": "NT=dHex(1)Hex(5)HexNAc(4)Sulf(2);AC=1543;CF=O(6) S(2) dHex Hex(5) HexNAc(4);MM=1928.553146", "dHex Hex(5) HexNAc(4) Me(2) Pent": "NT=dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1);AC=1544;CF=dHex(1) Hex(5) HexNAc(4) Me(2) Pent(1);MM=1928.713076", "Hex(5) HexNAc(4) NeuGc": "NT=Hex(5)HexNAc(4)NeuGc(1);AC=1545;CF=Hex(5) HexNAc(4) NeuGc(1);MM=1929.671939", "dHex Hex(3) HexNAc(6) Sulf": "NT=dHex(1)Hex(3)HexNAc(6)Sulf(1);AC=1546;CF=O(3) S dHex Hex(3) HexNAc(6);MM=1930.64943", "dHex Hex(6) HexNAc(4)": "NT=dHex(1)Hex(6)HexNAc(4);AC=1547;CF=dHex(1) Hex(6) HexNAc(4);MM=1930.69234", "dHex Hex(5) HexNAc(3) NeuAc Sulf": "NT=dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1);AC=1548;CF=O(3) S dHex Hex(5) HexNAc(3) NeuAc;MM=1936.612375", "Hex(7) HexNAc(4)": "NT=Hex(7)HexNAc(4);AC=1549;CF=Hex(7) HexNAc(4);MM=1946.687255", "dHex Hex(5) HexNAc(3) NeuGc Sulf": "NT=dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1);AC=1550;CF=O(3) S dHex Hex(5) HexNAc(3) NeuGc;MM=1952.60729", "Hex(4) HexNAc(5) NeuAc": "NT=Hex(4)HexNAc(5)NeuAc(1);AC=1551;CF=Hex(4) HexNAc(5) NeuAc(1);MM=1954.703574", "Hex(6) HexNAc(4) Me(3) Pent": "NT=Hex(6)HexNAc(4)Me(3)Pent(1);AC=1552;CF=Hex(6) HexNAc(4) Me(3) Pent(1);MM=1958.72364", "dHex Hex(7) HexNAc(3) Sulf": "NT=dHex(1)Hex(7)HexNAc(3)Sulf(1);AC=1553;CF=O(3) S dHex Hex(7) HexNAc(3);MM=1969.622606", "dHex Hex(7) HexNAc(3) Phos": "NT=dHex(1)Hex(7)HexNAc(3)Phos(1);AC=1554;CF=H O(3) P dHex Hex(7) HexNAc(3);MM=1969.632122", "dHex Hex(5) HexNAc(5)": "NT=dHex(1)Hex(5)HexNAc(5);AC=1555;CF=dHex(1) Hex(5) HexNAc(5);MM=1971.718889", "dHex Hex(4) HexNAc(4) NeuAc Sulf": "NT=dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1);AC=1556;CF=O(3) S dHex Hex(4) HexNAc(4) NeuAc;MM=1977.638925", "dHex(3) Hex(4) HexNAc(4) Sulf": "NT=dHex(3)Hex(4)HexNAc(4)Sulf(1);AC=1557;CF=O(3) S dHex(3) Hex(4) HexNAc(4);MM=1978.659326", "Hex(3) HexNAc(7) Sulf": "NT=Hex(3)HexNAc(7)Sulf(1);AC=1558;CF=O(3) S Hex(3) HexNAc(7);MM=1987.670893", "A3G3": "NT=Hex(6)HexNAc(5);AC=1559;CF=Hex(6) HexNAc(5);MM=1987.713804", "Hex(5) HexNAc(4) NeuAc Sulf": "NT=Hex(5)HexNAc(4)NeuAc(1)Sulf(1);AC=1560;CF=O(3) S Hex(5) HexNAc(4) NeuAc;MM=1993.633839", "Hex(3) HexNAc(6) NeuAc": "NT=Hex(3)HexNAc(6)NeuAc(1);AC=1561;CF=Hex(3) HexNAc(6) NeuAc(1);MM=1995.730123", "dHex(2) Hex(3) HexNAc(6)": "NT=dHex(2)Hex(3)HexNAc(6);AC=1562;CF=dHex(2) Hex(3) HexNAc(6);MM=1996.750524", "Hex HexNAc NeuGc": "NT=Hex(1)HexNAc(1)NeuGc(1);AC=1563;CF=Hex(1) HexNAc(1) NeuGc(1);MM=672.222527", "dHex Hex(2) HexNAc": "NT=dHex(1)Hex(2)HexNAc(1);AC=1564;CF=dHex(1) Hex(2) HexNAc(1);MM=673.242928", "HexNAc(3) Sulf": "NT=HexNAc(3)Sulf(1);AC=1565;CF=O(3) S HexNAc(3);MM=689.194932", "Hex(3) HexNAc": "NT=Hex(3)HexNAc(1);AC=1566;CF=Hex(3) HexNAc;MM=689.237843", "Hex HexNAc Kdn Sulf": "NT=Hex(1)HexNAc(1)Kdn(1)Sulf(1);AC=1567;CF=O(3) S Hex HexNAc Kdn;MM=695.157878", "HexNAc(2) NeuAc": "NT=HexNAc(2)NeuAc(1);AC=1568;CF=HexNAc(2) NeuAc(1);MM=697.254162", "HexNAc Kdn(2) ---OR--- Hex(2) HexNAc HexA": "NT=HexNAc(1)Kdn(2);AC=1570;CF=HexNAc Kdn(2);MM=703.217108", "Hex(3) HexNAc Me": "NT=Hex(3)HexNAc(1)Me(1);AC=1571;CF=Hex(3) HexNAc(1) Me(1);MM=703.253493", "Hex(2) HexA Pent Sulf": "NT=Hex(2)HexA(1)Pent(1)Sulf(1);AC=1572;CF=O(3) S Pent Hex(2) HexA;MM=712.136808", "HexNAc(2) NeuGc": "NT=HexNAc(2)NeuGc(1);AC=1573;CF=HexNAc(2) NeuGc(1);MM=713.249076", "Hex(4) Phos": "NT=Hex(4)Phos(1);AC=1575;CF=H O(3) P Hex(4);MM=728.177625", "Hex HexNAc NeuAc Sulf": "NT=Hex(1)HexNAc(1)NeuAc(1)Sulf(1);AC=1577;CF=O(3) S Hex HexNAc NeuAc;MM=736.184427", "Hex HexA HexNAc(2)": "NT=Hex(1)HexA(1)HexNAc(2);AC=1578;CF=Hex(1) HexA(1) HexNAc(2);MM=744.243657", "dHex Hex(2) HexNAc Sulf": "NT=dHex(1)Hex(2)HexNAc(1)Sulf(1);AC=1579;CF=O(3) S dHex Hex(2) HexNAc;MM=753.199743", "dHex HexNAc(3)": "NT=dHex(1)HexNAc(3);AC=1580;CF=dHex(1) HexNAc(3);MM=755.296027", "dHex Hex HexNAc Kdn ---OR--- Hex(2) dHex NeuAc": "NT=dHex(1)Hex(1)HexNAc(1)Kdn(1);AC=1581;CF=dHex Hex HexNAc Kdn;MM=761.258973", "Hex HexNAc(3)": "NT=Hex(1)HexNAc(3);AC=1582;CF=Hex(1) HexNAc(3);MM=771.290941", "HexNAc(2) NeuAc Sulf": "NT=HexNAc(2)NeuAc(1)Sulf(1);AC=1583;CF=O(3) S HexNAc(2) NeuAc;MM=777.210976", "dHex(2) Hex(3)": "NT=dHex(2)Hex(3);AC=1584;CF=dHex(2) Hex(3);MM=778.274288", "Hex(2) HexA HexNAc Sulf": "NT=Hex(2)HexA(1)HexNAc(1)Sulf(1);AC=1585;CF=O(3) S Hex(2) HexA HexNAc;MM=783.173922", "dHex(2) Hex(2) HexA": "NT=dHex(2)Hex(2)HexA(1);AC=1586;CF=dHex(2) Hex(2) HexA(1);MM=792.253553", "dHex Hex HexNAc(2) Sulf": "NT=dHex(1)Hex(1)HexNAc(2)Sulf(1);AC=1587;CF=O(3) S dHex Hex HexNAc(2);MM=794.226292", "dHex Hex HexNAc NeuAc": "NT=dHex(1)Hex(1)HexNAc(1)NeuAc(1);AC=1588;CF=dHex(1) Hex(1) HexNAc(1) NeuAc(1);MM=802.285522", "Hex(2) HexNAc(2) Sulf": "NT=Hex(2)HexNAc(2)Sulf(1);AC=1589;CF=O(3) S Hex(2) HexNAc(2);MM=810.221207", "HexNAc NeuGc(2)": "NT=HexNAc(1)NeuGc(2);AC=1592;CF=HexNAc(1) NeuGc(2);MM=817.260035", "dHex Hex HexNAc NeuGc ---OR--- Hex(2) HexNAc NeuAc": "NT=dHex(1)Hex(1)HexNAc(1)NeuGc(1);AC=1593;CF=dHex Hex HexNAc NeuGc;MM=818.280436", "dHex(2) Hex(2) HexNAc": "NT=dHex(2)Hex(2)HexNAc(1);AC=1594;CF=dHex(2) Hex(2) HexNAc(1);MM=819.300837", "Hex(2) HexNAc NeuGc": "NT=Hex(2)HexNAc(1)NeuGc(1);AC=1595;CF=Hex(2) HexNAc(1) NeuGc(1);MM=834.275351", "dHex Hex(3) HexNAc": "NT=dHex(1)Hex(3)HexNAc(1);AC=1596;CF=dHex(1) Hex(3) HexNAc(1);MM=835.295752", "dHex Hex(2) HexA HexNAc": "NT=dHex(1)Hex(2)HexA(1)HexNAc(1);AC=1597;CF=dHex(1) Hex(2) HexA(1) HexNAc(1);MM=849.275017", "Hex HexNAc(3) Sulf": "NT=Hex(1)HexNAc(3)Sulf(1);AC=1598;CF=O(3) S Hex HexNAc(3);MM=851.247756", "Hex(4) HexNAc": "NT=Hex(4)HexNAc(1);AC=1599;CF=Hex(4) HexNAc;MM=851.290667", "Hex HexNAc(2) NeuAc": "NT=Hex(1)HexNAc(2)NeuAc(1);AC=1600;CF=Hex(1) HexNAc(2) NeuAc(1);MM=859.306985", "Hex HexNAc(2) NeuGc": "NT=Hex(1)HexNAc(2)NeuGc(1);AC=1602;CF=Hex(1) HexNAc(2) NeuGc(1);MM=875.3019", "Hex(5) Phos": "NT=Hex(5)Phos(1);AC=1604;CF=H O(3) P Hex(5);MM=890.230448", "dHex(2) Hex HexNAc Kdn": "NT=dHex(2)Hex(1)HexNAc(1)Kdn(1);AC=1606;CF=dHex(2) Hex HexNAc Kdn;MM=907.316881", "dHex Hex(3) HexNAc Sulf": "NT=dHex(1)Hex(3)HexNAc(1)Sulf(1);AC=1607;CF=O(3) S dHex Hex(3) HexNAc;MM=915.252567", "dHex Hex HexNAc(3)": "NT=dHex(1)Hex(1)HexNAc(3);AC=1608;CF=dHex(1) Hex(1) HexNAc(3);MM=917.34885", "dHex Hex(2) HexA HexNAc Sulf": "NT=dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1);AC=1609;CF=O(3) S dHex Hex(2) HexA HexNAc;MM=929.231831", "Hex(2) HexNAc(3)": "NT=Hex(2)HexNAc(3);AC=1610;CF=Hex(2) HexNAc(3);MM=933.343765", "Hex HexNAc(2) NeuAc Sulf": "NT=Hex(1)HexNAc(2)NeuAc(1)Sulf(1);AC=1611;CF=O(3) S Hex HexNAc(2) NeuAc;MM=939.2638", "dHex(2) Hex(4)": "NT=dHex(2)Hex(4);AC=1612;CF=dHex(2) Hex(4);MM=940.327112", "dHex(2) HexNAc(2) Kdn": "NT=dHex(2)HexNAc(2)Kdn(1);AC=1614;CF=dHex(2) HexNAc(2) Kdn;MM=948.34343", "dHex Hex(2) HexNAc(2) Sulf": "NT=dHex(1)Hex(2)HexNAc(2)Sulf(1);AC=1615;CF=O(3) S dHex Hex(2) HexNAc(2);MM=956.279116", "dHex HexNAc(4)": "NT=dHex(1)HexNAc(4);AC=1616;CF=dHex(1) HexNAc(4);MM=958.375399", "Hex HexNAc NeuAc NeuGc": "NT=Hex(1)HexNAc(1)NeuAc(1)NeuGc(1);AC=1617;CF=Hex(1) HexNAc(1) NeuAc(1) NeuGc(1);MM=963.317944", "dHex Hex HexNAc(2) Kdn ---OR--- Hex(2) HexNAc dHex NeuAc": "NT=dHex(1)Hex(1)HexNAc(2)Kdn(1);AC=1618;CF=dHex Hex HexNAc(2) Kdn;MM=964.338345", "Hex HexNAc NeuGc(2)": "NT=Hex(1)HexNAc(1)NeuGc(2);AC=1619;CF=Hex(1) HexNAc(1) NeuGc(2);MM=979.312859", "Ac Hex HexNAc NeuAc(2)": "NT=Hex(1)HexNAc(1)NeuAc(2)Ac(1);AC=1620;CF=Ac Hex HexNAc NeuAc(2);MM=989.333594", "dHex(2) Hex(2) HexA HexNAc": "NT=dHex(2)Hex(2)HexA(1)HexNAc(1);AC=1621;CF=dHex(2) Hex(2) HexA(1) HexNAc(1);MM=995.332925", "dHex Hex HexNAc(3) Sulf": "NT=dHex(1)Hex(1)HexNAc(3)Sulf(1);AC=1622;CF=O(3) S dHex Hex HexNAc(3);MM=997.305665", "Hex(2) HexA NeuAc Pent Sulf": "NT=Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1);AC=1623;CF=O(3) S Pent Hex(2) HexA NeuAc;MM=1003.232225", "dHex Hex HexNAc(2) NeuAc": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(1);AC=1624;CF=dHex(1) Hex(1) HexNAc(2) NeuAc(1);MM=1005.364894", "dHex Hex(3) HexA HexNAc": "NT=dHex(1)Hex(3)HexA(1)HexNAc(1);AC=1625;CF=dHex(1) Hex(3) HexA(1) HexNAc(1);MM=1011.32784", "Hex(2) HexNAc(3) Sulf": "NT=Hex(2)HexNAc(3)Sulf(1);AC=1626;CF=O(3) S Hex(2) HexNAc(3);MM=1013.300579", "Hex(5) HexNAc": "NT=Hex(5)HexNAc(1);AC=1627;CF=Hex(5) HexNAc;MM=1013.34349", "Ac(2) Hex HexNAc NeuAc(2)": "NT=Hex(1)HexNAc(1)NeuAc(2)Ac(2);AC=1630;CF=Ac(2) Hex HexNAc NeuAc(2);MM=1031.344159", "Hex(2) HexNAc(2) NeuGc": "NT=Hex(2)HexNAc(2)NeuGc(1);AC=1631;CF=Hex(2) HexNAc(2) NeuGc(1);MM=1037.354723", "Hex(5) Phos(3)": "NT=Hex(5)Phos(3);AC=1632;CF=H(3) O(9) P(3) Hex(5);MM=1050.16311", "Hex(6) Phos": "NT=Hex(6)Phos(1);AC=1633;CF=H O(3) P Hex(6);MM=1052.283272", "dHex Hex(2) HexA HexNAc(2)": "NT=dHex(1)Hex(2)HexA(1)HexNAc(2);AC=1634;CF=dHex(1) Hex(2) HexA(1) HexNAc(2);MM=1052.354389", "dHex(2) Hex(3) HexNAc Sulf": "NT=dHex(2)Hex(3)HexNAc(1)Sulf(1);AC=1635;CF=O(3) S dHex(2) Hex(3) HexNAc;MM=1061.310475", "Hex HexNAc(3) NeuAc": "NT=Hex(1)HexNAc(3)NeuAc(1);AC=1636;CF=Hex(1) HexNAc(3) NeuAc(1);MM=1062.386358", "dHex(2) Hex HexNAc(3)": "NT=dHex(2)Hex(1)HexNAc(3);AC=1637;CF=dHex(2) Hex(1) HexNAc(3);MM=1063.406759", "Hex HexNAc(3) NeuGc": "NT=Hex(1)HexNAc(3)NeuGc(1);AC=1638;CF=Hex(1) HexNAc(3) NeuGc(1);MM=1078.381273", "dHex Hex HexNAc(2) NeuAc Sulf": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1);AC=1639;CF=O(3) S dHex Hex HexNAc(2) NeuAc;MM=1085.321709", "dHex Hex(3) HexA HexNAc Sulf": "NT=dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1);AC=1640;CF=O(3) S dHex Hex(3) HexA HexNAc;MM=1091.284655", "dHex Hex HexA HexNAc(3)": "NT=dHex(1)Hex(1)HexA(1)HexNAc(3);AC=1641;CF=dHex(1) Hex(1) HexA(1) HexNAc(3);MM=1093.380938", "Hex(2) HexNAc(2) NeuAc Sulf": "NT=Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1642;CF=O(3) S Hex(2) HexNAc(2) NeuAc;MM=1101.316623", "dHex(2) Hex(2) HexNAc(2) Sulf": "NT=dHex(2)Hex(2)HexNAc(2)Sulf(1);AC=1643;CF=O(3) S dHex(2) Hex(2) HexNAc(2);MM=1102.337025", "dHex(2) Hex HexNAc(2) Kdn ---OR--- Hex(2) HexNAc dHex(2) NeuAc": "NT=dHex(2)Hex(1)HexNAc(2)Kdn(1);AC=1644;CF=dHex(2) Hex HexNAc(2) Kdn;MM=1110.396254", "dHex Hex HexNAc(4)": "NT=dHex(1)Hex(1)HexNAc(4);AC=1645;CF=dHex(1) Hex(1) HexNAc(4);MM=1120.428223", "Hex(2) HexNAc(4)": "NT=Hex(2)HexNAc(4);AC=1646;CF=Hex(2) HexNAc(4);MM=1136.423137", "Hex(2) HexNAc NeuGc(2)": "NT=Hex(2)HexNAc(1)NeuGc(2);AC=1647;CF=Hex(2) HexNAc(1) NeuGc(2);MM=1141.365682", "dHex(2) Hex(4) HexNAc": "NT=dHex(2)Hex(4)HexNAc(1);AC=1648;CF=dHex(2) Hex(4) HexNAc(1);MM=1143.406484", "Hex HexNAc(2) NeuAc(2)": "NT=Hex(1)HexNAc(2)NeuAc(2);AC=1649;CF=Hex(1) HexNAc(2) NeuAc(2);MM=1150.402402", "dHex(2) Hex HexNAc(2) NeuAc": "NT=dHex(2)Hex(1)HexNAc(2)NeuAc(1);AC=1650;CF=dHex(2) Hex(1) HexNAc(2) NeuAc(1);MM=1151.422803", "dHex Hex(2) HexNAc(3) Sulf": "NT=dHex(1)Hex(2)HexNAc(3)Sulf(1);AC=1651;CF=O(3) S dHex Hex(2) HexNAc(3);MM=1159.358488", "dHex HexNAc(5)": "NT=dHex(1)HexNAc(5);AC=1652;CF=dHex(1) HexNAc(5);MM=1161.454772", "dHex(2) Hex HexNAc(2) NeuGc ---OR--- Hex(2) HexNAc(2) dHex NeuAc ---OR--- Hex HexNAc(3) dHex Kdn": "NT=dHex(2)Hex(1)HexNAc(2)NeuGc(1);AC=1653;CF=dHex(2) Hex HexNAc(2) NeuGc;MM=1167.417718", "dHex(3) Hex(2) HexNAc(2)": "NT=dHex(3)Hex(2)HexNAc(2);AC=1654;CF=dHex(3) Hex(2) HexNAc(2);MM=1168.438119", "Hex(3) HexNAc(3) Sulf": "NT=Hex(3)HexNAc(3)Sulf(1);AC=1655;CF=O(3) S Hex(3) HexNAc(3);MM=1175.353403", "dHex(2) Hex(2) HexNAc(2) Sulf(2)": "NT=dHex(2)Hex(2)HexNAc(2)Sulf(2);AC=1656;CF=O(6) S(2) dHex(2) Hex(2) HexNAc(2);MM=1182.293839", "dHex Hex(2) HexNAc(2) NeuGc ---OR--- Hex(3) HexNAc(2) NeuAc": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(1);AC=1657;CF=dHex Hex(2) HexNAc(2) NeuGc;MM=1183.412632", "dHex Hex HexNAc(3) NeuAc": "NT=dHex(1)Hex(1)HexNAc(3)NeuAc(1);AC=1658;CF=dHex Hex HexNAc(3) NeuAc;MM=1208.444267", "Hex(6) Phos(3)": "NT=Hex(6)Phos(3);AC=1659;CF=H(3) O(9) P(3) Hex(6);MM=1212.215934", "dHex Hex(3) HexA HexNAc(2)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(2);AC=1660;CF=dHex(1) Hex(3) HexA(1) HexNAc(2);MM=1214.407213", "dHex Hex HexNAc(3) NeuGc ---OR--- Hex(2) HexNAc(3) NeuAc": "NT=dHex(1)Hex(1)HexNAc(3)NeuGc(1);AC=1661;CF=dHex Hex HexNAc(3) NeuGc;MM=1224.439181", "Hex HexNAc(2) NeuAc(2) Sulf": "NT=Hex(1)HexNAc(2)NeuAc(2)Sulf(1);AC=1662;CF=O(3) S Hex HexNAc(2) NeuAc(2);MM=1230.359217", "dHex(2) Hex(3) HexA HexNAc Sulf": "NT=dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1);AC=1663;CF=O(3) S dHex(2) Hex(3) HexA HexNAc;MM=1237.342563", "Hex HexNAc NeuAc(3)": "NT=Hex(1)HexNAc(1)NeuAc(3);AC=1664;CF=Hex(1) HexNAc(1) NeuAc(3);MM=1238.418446", "Hex(2) HexNAc(3) NeuGc": "NT=Hex(2)HexNAc(3)NeuGc(1);AC=1665;CF=Hex(2) HexNAc(3) NeuGc(1);MM=1240.434096", "dHex Hex(2) HexNAc(2) NeuAc Sulf": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1666;CF=O(3) S dHex Hex(2) HexNAc(2) NeuAc;MM=1247.374532", "dHex(3) Hex HexNAc(2) Kdn": "NT=dHex(3)Hex(1)HexNAc(2)Kdn(1);AC=1667;CF=dHex(3) Hex HexNAc(2) Kdn;MM=1256.454163", "dHex(2) Hex(3) HexNAc(2) Sulf": "NT=dHex(2)Hex(3)HexNAc(2)Sulf(1);AC=1668;CF=O(3) S dHex(2) Hex(3) HexNAc(2);MM=1264.389848", "dHex(2) Hex(2) HexNAc(2) Kdn": "NT=dHex(2)Hex(2)HexNAc(2)Kdn(1);AC=1669;CF=dHex(2) Hex(2) HexNAc(2) Kdn;MM=1272.449077", "dHex(2) Hex(2) HexA HexNAc(2) Sulf": "NT=dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1);AC=1670;CF=O(3) S dHex(2) Hex(2) HexA HexNAc(2);MM=1278.369113", "dHex Hex(2) HexNAc(4)": "NT=dHex(1)Hex(2)HexNAc(4);AC=1671;CF=dHex Hex(2) HexNAc(4);MM=1282.481046", "Hex HexNAc NeuGc(3)": "NT=Hex(1)HexNAc(1)NeuGc(3);AC=1672;CF=Hex(1) HexNAc(1) NeuGc(3);MM=1286.40319", "dHex Hex HexNAc(3) NeuAc Sulf": "NT=dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1);AC=1673;CF=O(3) S dHex Hex HexNAc(3) NeuAc;MM=1288.401081", "dHex Hex(3) HexA HexNAc(2) Sulf": "NT=dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1);AC=1674;CF=O(3) S dHex Hex(3) HexA HexNAc(2);MM=1294.364027", "dHex Hex HexNAc(2) NeuAc(2)": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(2);AC=1675;CF=dHex(1) Hex(1) HexNAc(2) NeuAc(2);MM=1296.460311", "dHex(3) HexNAc(3) Kdn": "NT=dHex(3)HexNAc(3)Kdn(1);AC=1676;CF=dHex(3) HexNAc(3) Kdn;MM=1297.480712", "Hex(2) HexNAc(3) NeuAc Sulf": "NT=Hex(2)HexNAc(3)NeuAc(1)Sulf(1);AC=1678;CF=O(3) S Hex(2) HexNAc(3) NeuAc;MM=1304.395996", "dHex(2) Hex(2) HexNAc(3) Sulf": "NT=dHex(2)Hex(2)HexNAc(3)Sulf(1);AC=1679;CF=O(3) S dHex(2) Hex(2) HexNAc(3);MM=1305.416397", "dHex(2) HexNAc(5)": "NT=dHex(2)HexNAc(5);AC=1680;CF=dHex(2) HexNAc(5);MM=1307.512681", "Hex(2) HexNAc(2) NeuAc(2)": "NT=Hex(2)HexNAc(2)NeuAc(2);AC=1681;CF=Hex(2) HexNAc(2) NeuAc(2);MM=1312.455225", "dHex(2) Hex(2) HexNAc(2) NeuAc ---OR--- Hex HexNAc(3) dHex(2) Kdn": "NT=dHex(2)Hex(2)HexNAc(2)NeuAc(1);AC=1682;CF=dHex(2) Hex(2) HexNAc(2) NeuAc;MM=1313.475627", "dHex Hex(3) HexNAc(3) Sulf": "NT=dHex(1)Hex(3)HexNAc(3)Sulf(1);AC=1683;CF=O(3) S dHex Hex(3) HexNAc(3);MM=1321.411312", "dHex(2) Hex(2) HexNAc(2) NeuGc ---OR--- Hex(3) HexNAc(2) dHex NeuAc ---OR--- Hex(2) HexNAc(3) dHex Kdn": "NT=dHex(2)Hex(2)HexNAc(2)NeuGc(1);AC=1684;CF=dHex(2) Hex(2) HexNAc(2) NeuGc;MM=1329.470541", "Hex(2) HexNAc(5)": "NT=Hex(2)HexNAc(5);AC=1685;CF=Hex(2) HexNAc(5);MM=1339.50251", "dHex Hex(3) HexNAc(2) NeuGc": "NT=dHex(1)Hex(3)HexNAc(2)NeuGc(1);AC=1686;CF=dHex(1) Hex(3) HexNAc(2) NeuGc(1);MM=1345.465456", "Hex HexNAc(3) NeuAc(2)": "NT=Hex(1)HexNAc(3)NeuAc(2);AC=1687;CF=Hex(1) HexNAc(3) NeuAc(2);MM=1353.481775", "dHex Hex(2) HexNAc(3) NeuAc": "NT=dHex(1)Hex(2)HexNAc(3)NeuAc(1);AC=1688;CF=dHex(1) Hex(2) HexNAc(3) NeuAc(1);MM=1370.49709", "dHex(3) Hex(2) HexNAc(3)": "NT=dHex(3)Hex(2)HexNAc(3);AC=1689;CF=dHex(3) Hex(2) HexNAc(3);MM=1371.517491", "Hex(7) Phos(3)": "NT=Hex(7)Phos(3);AC=1690;CF=H(3) O(9) P(3) Hex(7);MM=1374.268757", "dHex Hex(4) HexA HexNAc(2)": "NT=dHex(1)Hex(4)HexA(1)HexNAc(2);AC=1691;CF=dHex(1) Hex(4) HexA(1) HexNAc(2);MM=1376.460036", "Hex(3) HexNAc(3) NeuAc ---OR--- Hex(2) HexNAc(3) dHex NeuGc ---OR--- Hex(2) HexNAc(4) Kdn": "NT=Hex(3)HexNAc(3)NeuAc(1);AC=1692;CF=Hex(3) HexNAc(3) NeuAc;MM=1386.492005", "dHex Hex(3) HexA(2) HexNAc(2)": "NT=dHex(1)Hex(3)HexA(2)HexNAc(2);AC=1693;CF=dHex(1) Hex(3) HexA(2) HexNAc(2);MM=1390.439301", "Hex(2) HexNAc(2) NeuAc(2) Sulf": "NT=Hex(2)HexNAc(2)NeuAc(2)Sulf(1);AC=1694;CF=O(3) S Hex(2) HexNAc(2) NeuAc(2);MM=1392.41204", "dHex(2) Hex(2) HexNAc(2) NeuAc Sulf": "NT=dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1695;CF=O(3) S dHex(2) Hex(2) HexNAc(2) NeuAc;MM=1393.432441", "Hex(3) HexNAc(3) NeuGc": "NT=Hex(3)HexNAc(3)NeuGc(1);AC=1696;CF=Hex(3) HexNAc(3) NeuGc(1);MM=1402.48692", "dHex(4) Hex HexNAc(2) Kdn": "NT=dHex(4)Hex(1)HexNAc(2)Kdn(1);AC=1697;CF=dHex(4) Hex HexNAc(2) Kdn;MM=1402.512072", "dHex(3) Hex(2) HexNAc(2) Kdn": "NT=dHex(3)Hex(2)HexNAc(2)Kdn(1);AC=1698;CF=dHex(3) Hex(2) HexNAc(2) Kdn;MM=1418.506986", "dHex(3) Hex(2) HexA HexNAc(2) Sulf": "NT=dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1);AC=1699;CF=O(3) S dHex(3) Hex(2) HexA HexNAc(2);MM=1424.427021", "Hex(2) HexNAc(4) NeuAc": "NT=Hex(2)HexNAc(4)NeuAc(1);AC=1700;CF=Hex(2) HexNAc(4) NeuAc(1);MM=1427.518554", "dHex(2) Hex(2) HexNAc(4)": "NT=dHex(2)Hex(2)HexNAc(4);AC=1701;CF=dHex(2) Hex(2) HexNAc(4);MM=1428.538955", "dHex(2) Hex(3) HexA HexNAc(2) Sulf": "NT=dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1);AC=1702;CF=O(3) S dHex(2) Hex(3) HexA HexNAc(2);MM=1440.421936", "dHex(4) HexNAc(3) Kdn": "NT=dHex(4)HexNAc(3)Kdn(1);AC=1703;CF=dHex(4) HexNAc(3) Kdn;MM=1443.538621", "Hex(2) HexNAc NeuGc(3)": "NT=Hex(2)HexNAc(1)NeuGc(3);AC=1705;CF=Hex(2) HexNAc(1) NeuGc(3);MM=1448.456013", "dHex(4) Hex HexNAc Kdn(2)": "NT=dHex(4)Hex(1)HexNAc(1)Kdn(2);AC=1706;CF=dHex(4) Hex HexNAc Kdn(2);MM=1449.501567", "dHex Hex(2) HexNAc(3) NeuAc Sulf": "NT=dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1);AC=1707;CF=O(3) S dHex Hex(2) HexNAc(3) NeuAc;MM=1450.453905", "dHex Hex(2) HexNAc(2) NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(2);AC=1708;CF=dHex(1) Hex(2) HexNAc(2) NeuAc(2);MM=1458.513134", "dHex(3) Hex HexNAc(3) Kdn": "NT=dHex(3)Hex(1)HexNAc(3)Kdn(1);AC=1709;CF=dHex(3) Hex HexNAc(3) Kdn;MM=1459.533535", "Hex(3) HexNAc(3) NeuAc Sulf": "NT=Hex(3)HexNAc(3)NeuAc(1)Sulf(1);AC=1711;CF=O(3) S Hex(3) HexNAc(3) NeuAc;MM=1466.44882", "Hex(3) HexNAc(2) NeuAc(2)": "NT=Hex(3)HexNAc(2)NeuAc(2);AC=1712;CF=Hex(3) HexNAc(2) NeuAc(2);MM=1474.508049", "Hex(3) HexNAc(3) NeuGc Sulf": "NT=Hex(3)HexNAc(3)NeuGc(1)Sulf(1);AC=1713;CF=O(3) S Hex(3) HexNAc(3) NeuGc;MM=1482.443734", "dHex Hex(2) HexNAc(2) NeuGc(2)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(2);AC=1714;CF=dHex(1) Hex(2) HexNAc(2) NeuGc(2);MM=1490.502964", "dHex(2) Hex(3) HexNAc(2) NeuGc ---OR--- Hex(4) HexNAc(2) dHex NeuAc": "NT=dHex(2)Hex(3)HexNAc(2)NeuGc(1);AC=1715;CF=dHex(2) Hex(3) HexNAc(2) NeuGc;MM=1491.523365", "dHex Hex(3) HexA HexNAc(3) Sulf": "NT=dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1);AC=1716;CF=O(3) S dHex Hex(3) HexA HexNAc(3);MM=1497.4434", "Hex(2) HexNAc(3) NeuAc(2)": "NT=Hex(2)HexNAc(3)NeuAc(2);AC=1717;CF=Hex(2) HexNAc(3) NeuAc(2);MM=1515.534598", "dHex(2) Hex(2) HexNAc(3) NeuAc": "NT=dHex(2)Hex(2)HexNAc(3)NeuAc(1);AC=1718;CF=dHex(2) Hex(2) HexNAc(3) NeuAc(1);MM=1516.554999", "dHex(4) Hex(2) HexNAc(3)": "NT=dHex(4)Hex(2)HexNAc(3);AC=1719;CF=dHex(4) Hex(2) HexNAc(3);MM=1517.5754", "Hex(2) HexNAc(3) NeuAc NeuGc": "NT=Hex(2)HexNAc(3)NeuAc(1)NeuGc(1);AC=1720;CF=Hex(2) HexNAc(3) NeuAc(1) NeuGc(1);MM=1531.529513", "dHex(2) Hex(2) HexNAc(3) NeuGc ---OR--- Hex(3) HexNAc(3) dHex NeuAc ---OR--- Hex(2) HexNAc(4) dHex Kdn": "NT=dHex(2)Hex(2)HexNAc(3)NeuGc(1);AC=1721;CF=dHex(2) Hex(2) HexNAc(3) NeuGc;MM=1532.549914", "dHex(3) Hex(3) HexNAc(3)": "NT=dHex(3)Hex(3)HexNAc(3);AC=1722;CF=dHex(3) Hex(3) HexNAc(3);MM=1533.570315", "Hex(8) Phos(3)": "NT=Hex(8)Phos(3);AC=1723;CF=H(3) O(9) P(3) Hex(8);MM=1536.321581", "dHex Hex(2) HexNAc(2) NeuAc(2) Sulf": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1);AC=1724;CF=O(3) S dHex Hex(2) HexNAc(2) NeuAc(2);MM=1538.469949", "Hex(2) HexNAc(3) NeuGc(2)": "NT=Hex(2)HexNAc(3)NeuGc(2);AC=1725;CF=Hex(2) HexNAc(3) NeuGc(2);MM=1547.524427", "dHex(4) Hex(2) HexNAc(2) Kdn": "NT=dHex(4)Hex(2)HexNAc(2)Kdn(1);AC=1726;CF=dHex(4) Hex(2) HexNAc(2) Kdn;MM=1564.564895", "dHex Hex(2) HexNAc(4) NeuAc": "NT=dHex(1)Hex(2)HexNAc(4)NeuAc(1);AC=1727;CF=dHex(1) Hex(2) HexNAc(4) NeuAc(1);MM=1573.576463", "dHex(3) Hex(2) HexNAc(4)": "NT=dHex(3)Hex(2)HexNAc(4);AC=1728;CF=dHex(3) Hex(2) HexNAc(4);MM=1574.596864", "Hex HexNAc NeuGc(4)": "NT=Hex(1)HexNAc(1)NeuGc(4);AC=1729;CF=Hex(1) HexNAc(1) NeuGc(4);MM=1593.493521", "dHex(4) Hex HexNAc(3) Kdn": "NT=dHex(4)Hex(1)HexNAc(3)Kdn(1);AC=1730;CF=dHex(4) Hex HexNAc(3) Kdn;MM=1605.591444", "Hex(4) HexNAc(4) Sulf(2)": "NT=Hex(4)HexNAc(4)Sulf(2);AC=1732;CF=O(6) S(2) Hex(4) HexNAc(4);MM=1620.442414", "dHex(3) Hex(2) HexNAc(3) Kdn ---OR--- Hex(3) HexNAc(2) dHex(3) NeuAc": "NT=dHex(3)Hex(2)HexNAc(3)Kdn(1);AC=1733;CF=dHex(3) Hex(2) HexNAc(3) Kdn;MM=1621.586359", "dHex(2) Hex(2) HexNAc(5)": "NT=dHex(2)Hex(2)HexNAc(5);AC=1735;CF=dHex(2) Hex(2) HexNAc(5);MM=1631.618328", "dHex(2) Hex(3) HexA HexNAc(3) Sulf": "NT=dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1);AC=1736;CF=O(3) S dHex(2) Hex(3) HexA HexNAc(3);MM=1643.501309", "dHex Hex(4) HexA HexNAc(3) Sulf": "NT=dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1);AC=1737;CF=O(3) S dHex Hex(4) HexA HexNAc(3);MM=1659.496223", "Hex(3) HexNAc(3) NeuAc(2)": "NT=Hex(3)HexNAc(3)NeuAc(2);AC=1738;CF=Hex(3) HexNAc(3) NeuAc(2);MM=1677.587422", "dHex(2) Hex(3) HexNAc(3) NeuAc ---OR--- Hex(2) HexNAc(4) dHex(2) Kdn": "NT=dHex(2)Hex(3)HexNAc(3)NeuAc(1);AC=1739;CF=dHex(2) Hex(3) HexNAc(3) NeuAc;MM=1678.607823", "dHex(4) Hex(3) HexNAc(3)": "NT=dHex(4)Hex(3)HexNAc(3);AC=1740;CF=dHex(4) Hex(3) HexNAc(3);MM=1679.628224", "Hex(9) Phos(3)": "NT=Hex(9)Phos(3);AC=1742;CF=H(3) O(9) P(3) Hex(9);MM=1698.374404", "dHex(2) HexNAc(7)": "NT=dHex(2)HexNAc(7);AC=1743;CF=dHex(2) HexNAc(7);MM=1713.671426", "Hex(2) HexNAc NeuGc(4)": "NT=Hex(2)HexNAc(1)NeuGc(4);AC=1744;CF=Hex(2) HexNAc(1) NeuGc(4);MM=1755.546345", "Hex(3) HexNAc(3) NeuAc(2) Sulf": "NT=Hex(3)HexNAc(3)NeuAc(2)Sulf(1);AC=1745;CF=O(3) S Hex(3) HexNAc(3) NeuAc(2);MM=1757.544236", "dHex(2) Hex(3) HexNAc(5)": "NT=dHex(2)Hex(3)HexNAc(5);AC=1746;CF=dHex(2) Hex(3) HexNAc(5);MM=1793.671151", "dHex Hex(2) HexNAc(2) NeuGc(3)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(3);AC=1747;CF=dHex(1) Hex(2) HexNAc(2) NeuGc(3);MM=1797.593295", "dHex(2) Hex(4) HexA HexNAc(3) Sulf": "NT=dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1);AC=1748;CF=O(3) S dHex(2) Hex(4) HexA HexNAc(3);MM=1805.554132", "Hex(2) HexNAc(3) NeuAc(3)": "NT=Hex(2)HexNAc(3)NeuAc(3);AC=1749;CF=Hex(2) HexNAc(3) NeuAc(3);MM=1806.630015", "dHex Hex(3) HexNAc(3) NeuAc(2)": "NT=dHex(1)Hex(3)HexNAc(3)NeuAc(2);AC=1750;CF=dHex(1) Hex(3) HexNAc(3) NeuAc(2);MM=1823.64533", "dHex(3) Hex(3) HexNAc(3) NeuAc": "NT=dHex(3)Hex(3)HexNAc(3)NeuAc(1);AC=1751;CF=dHex(3) Hex(3) HexNAc(3) NeuAc(1);MM=1824.665732", "Hex(2) HexNAc(3) NeuGc(3)": "NT=Hex(2)HexNAc(3)NeuGc(3);AC=1752;CF=Hex(2) HexNAc(3) NeuGc(3);MM=1854.614759", "Hex(10) Phos(3)": "NT=Hex(10)Phos(3);AC=1753;CF=H(3) O(9) P(3) Hex(10);MM=1860.427228", "dHex Hex(2) HexNAc(4) NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(4)NeuAc(2);AC=1754;CF=dHex(1) Hex(2) HexNAc(4) NeuAc(2);MM=1864.67188", "Hex HexNAc NeuGc(5)": "NT=Hex(1)HexNAc(1)NeuGc(5);AC=1755;CF=Hex(1) HexNAc(1) NeuGc(5);MM=1900.583852", "Hex(4) HexNAc(4) NeuAc Sulf(2)": "NT=Hex(4)HexNAc(4)NeuAc(1)Sulf(2);AC=1756;CF=O(6) S(2) Hex(4) HexNAc(4) NeuAc;MM=1911.53783", "Hex(4) HexNAc(4) NeuGc Sulf(2)": "NT=Hex(4)HexNAc(4)NeuGc(1)Sulf(2);AC=1757;CF=O(6) S(2) Hex(4) HexNAc(4) NeuGc;MM=1927.532745", "dHex(2) Hex(3) HexNAc(3) NeuAc(2)": "NT=dHex(2)Hex(3)HexNAc(3)NeuAc(2);AC=1758;CF=dHex(2) Hex(3) HexNAc(3) NeuAc(2);MM=1969.703239", "Hex(4) HexNAc(4) NeuAc Sulf(3)": "NT=Hex(4)HexNAc(4)NeuAc(1)Sulf(3);AC=1759;CF=O(9) S(3) Hex(4) HexNAc(4) NeuAc;MM=1991.494645", "dHex(2) Hex(2) HexNAc(2)": "NT=dHex(2)Hex(2)HexNAc(2);AC=1760;CF=dHex(2) Hex(2) HexNAc(2);MM=1022.38021", "dHex Hex(3) HexNAc(2)": "NT=dHex(1)Hex(3)HexNAc(2);AC=1761;CF=dHex(1) Hex(3) HexNAc(2);MM=1038.375125", "dHex Hex(2) HexNAc(3)": "NT=dHex(1)Hex(2)HexNAc(3);AC=1762;CF=dHex(1) Hex(2) HexNAc(3);MM=1079.401674", "Hex(3) HexNAc(3)": "NT=Hex(3)HexNAc(3);AC=1763;CF=Hex(3) HexNAc(3);MM=1095.396588", "dHex Hex(3) HexNAc(2) Sulf": "NT=dHex(1)Hex(3)HexNAc(2)Sulf(1);AC=1764;CF=O(3) S dHex Hex(3) HexNAc(2);MM=1118.331939", "dHex(2) Hex(3) HexNAc(2)": "NT=dHex(2)Hex(3)HexNAc(2);AC=1765;CF=dHex(2) Hex(3) HexNAc(2);MM=1184.433033", "dHex Hex(4) HexNAc(2)": "NT=dHex(1)Hex(4)HexNAc(2);AC=1766;CF=dHex(1) Hex(4) HexNAc(2);MM=1200.427948", "dHex(2) Hex(2) HexNAc(3)": "NT=dHex(2)Hex(2)HexNAc(3);AC=1767;CF=dHex(2) Hex(2) HexNAc(3);MM=1225.459583", "dHex Hex(3) HexNAc(3)": "NT=dHex(1)Hex(3)HexNAc(3);AC=1768;CF=dHex(1) Hex(3) HexNAc(3);MM=1241.454497", "Hex(4) HexNAc(3)": "NT=Hex(4)HexNAc(3);AC=1769;CF=Hex(4) HexNAc(3);MM=1257.449412", "dHex(2) Hex(4) HexNAc(2)": "NT=dHex(2)Hex(4)HexNAc(2);AC=1770;CF=dHex(2) Hex(4) HexNAc(2);MM=1346.485857", "dHex(2) Hex(3) HexNAc(3)": "NT=dHex(2)Hex(3)HexNAc(3);AC=1771;CF=dHex(2) Hex(3) HexNAc(3);MM=1387.512406", "A3": "NT=Hex(3)HexNAc(5);AC=1772;CF=Hex(3) HexNAc(5);MM=1501.555334", "Hex(4) HexNAc(3) NeuAc ---OR--- Hex(3) HexNAc(4) Kdn": "NT=Hex(4)HexNAc(3)NeuAc(1);AC=1773;CF=Hex(4) HexNAc(3) NeuAc;MM=1548.544828", "dHex(2) Hex(3) HexNAc(4)": "NT=dHex(2)Hex(3)HexNAc(4);AC=1774;CF=dHex(2) Hex(3) HexNAc(4);MM=1590.591779", "dHex Hex(3) HexNAc(5)": "NT=dHex(1)Hex(3)HexNAc(5);AC=1775;CF=dHex(1) Hex(3) HexNAc(5);MM=1647.613242", "A4": "NT=Hex(3)HexNAc(6);AC=1776;CF=Hex(3) HexNAc(6);MM=1704.634706", "Hex(4) HexNAc(4) NeuAc": "NT=Hex(4)HexNAc(4)NeuAc(1);AC=1777;CF=Hex(4) HexNAc(4) NeuAc(1);MM=1751.624201", "dHex(2) Hex(4) HexNAc(4) ---OR--- Hex(4) HexNAc(4) dHex Pent Me": "NT=dHex(2)Hex(4)HexNAc(4);AC=1778;CF=dHex(2) Hex(4) HexNAc(4);MM=1752.644602", "Hex(6) HexNAc(4)": "NT=Hex(6)HexNAc(4);AC=1779;CF=Hex(6) HexNAc(4);MM=1784.634431", "Hex(5) HexNAc(5)": "NT=Hex(5)HexNAc(5);AC=1780;CF=Hex(5) HexNAc(5);MM=1825.660981", "dHex Hex(3) HexNAc(6)": "NT=dHex(1)Hex(3)HexNAc(6);AC=1781;CF=dHex(1) Hex(3) HexNAc(6);MM=1850.692615", "dHex Hex(4) HexNAc(4) NeuAc ---OR--- Hex(3) HexNAc(5) dHex Kdn": "NT=dHex(1)Hex(4)HexNAc(4)NeuAc(1);AC=1782;CF=dHex Hex(4) HexNAc(4) NeuAc;MM=1897.68211", "dHex(3) Hex(4) HexNAc(4)": "NT=dHex(3)Hex(4)HexNAc(4);AC=1783;CF=dHex(3) Hex(4) HexNAc(4);MM=1898.702511", "dHex Hex(3) HexNAc(5) NeuAc": "NT=dHex(1)Hex(3)HexNAc(5)NeuAc(1);AC=1784;CF=dHex(1) Hex(3) HexNAc(5) NeuAc(1);MM=1938.708659", "dHex(2) Hex(4) HexNAc(5)": "NT=dHex(2)Hex(4)HexNAc(5);AC=1785;CF=dHex(2) Hex(4) HexNAc(5);MM=1955.723975", "Ac Hex HexNAc NeuAc": "NT=Hex(1)HexNAc(1)NeuAc(1)Ac(1);AC=1786;CF=Ac Hex HexNAc NeuAc;MM=698.238177", "13C(2) 15N(2)": "NT=Label:13C(2)15N(2);AC=1787;CF=C(-2) 13C(2) N(-2) 15N(2);MM=4.00078", "Ammonium-quenched monolink of DSS/BS3 crosslinker": "NT=Xlink:DSS[155];AC=1789;CF=H(13) C(8) N O(2);MM=155.094629", "SUMOylation by Giardia lamblia": "NT=NQIGG;AC=1799;CF=H(31) C(19) N(7) O(7);MM=469.228496", "Fluorescein-tyramine adduct by peroxidase activity": "NT=Fluorescein-tyramine;AC=1801;CF=H(19) C(29) N O(7);MM=493.116152", "transamidation of glycine ethyl ester to glutamine": "NT=GEE;AC=1824;CF=H(6) C(4) O(2);MM=86.036779", "Simulate peptide-RNA conjugates": "NT=RNPXL;AC=1825;CF=H(13) C(9) N(2) O(9) P;MM=324.035867", "Pyro-Glu from E + Methylation": "NT=Glu->pyro-Glu+Methyl;AC=1826;CF=C O(-1);MM=-3.994915", "Pyro-Glu from E + Methylation Medium": "NT=Glu->pyro-Glu+Methyl:2H(2)13C(1);AC=1827;CF=H(-2) 2H(2) 13C O(-1);MM=-0.979006", "LeumethylArgGlyGly": "NT=LRGG+methyl;AC=1828;CF=H(31) C(17) N(7) O(4);MM=397.243753", "LeudimethylArgGlyGly": "NT=LRGG+dimethyl;AC=1829;CF=H(33) C(18) N(7) O(4);MM=411.259403", "Biotin-Phenol": "NT=Biotin-tyramide;AC=1830;CF=H(23) C(18) N(3) O(3) S;MM=361.146012", "tris adduct causes 104 Da addition at asparagine-succinimide intermediate": "NT=Tris;AC=1831;CF=H(10) C(4) N O(2);MM=104.071154", "Iodoacetamide derivative of stilbene (reaction product with thiol)": "NT=IASD;AC=1832;CF=H(16) C(18) N(2) O(8) S(2);MM=452.034807", "NP-40 synthetic polymer terminus": "NT=NP40;AC=1833;CF=H(24) C(15) O;MM=220.182715", "Tween 20 synthetic polymer terminus": "NT=Tween20;AC=1834;CF=H(21) C(12);MM=165.164326", "Tween 80 synthetic polymer terminus": "NT=Tween80;AC=1835;CF=H(31) C(18) O;MM=263.237491", "Triton synthetic polymer terminus": "NT=Triton;AC=1836;CF=H(20) C(14);MM=188.156501", "Brij 35 synthetic polymer terminus": "NT=Brij35;AC=1837;CF=H(24) C(12);MM=168.187801", "Brij 58 synthetic polymer terminus": "NT=Brij58;AC=1838;CF=H(32) C(16);MM=224.250401", "beta-Funaltrexamine": "NT=betaFNA;AC=1839;CF=H(30) C(25) N(2) O(6);MM=454.210387", "Fucosylated biantennary + 2 alphaGal": "NT=dHex(1)Hex(7)HexNAc(4);AC=1840;CF=dHex Hex(7) HexNAc(4);MM=2092.745164", "EZ-Link Sulfo-NHS-SS-Biotin": "NT=Biotin:Thermo-21328;AC=1841;CF=H(23) C(15) N(3) O(3) S(3);MM=389.090154", "disuccinimidyl sulfoxide CID cleavable cross-link": "NT=Xlink:DSSO;AC=1842;CF=H(6) C(6) O(3) S;MM=158.003765", "Cytidine monophosphate": "NT=PhosphoCytidine;AC=1843;CF=H(12) C(9) N(3) O(7) P;MM=305.041287", "EGS cross-linker": "NT=Xlink:EGS;AC=1844;CF=H(10) C(10) O(6);MM=226.047738", "Azidophenylalanine": "NT=AzidoF;AC=1845;CF=H(-1) N(3);MM=41.001397", "Cys alkylation by dimethylaminoethyl halide": "NT=Dimethylaminoethyl;AC=1846;CF=H(9) C(4) N;MM=71.073499", "Glutarylation": "NT=Gluratylation;AC=1848;CF=H(6) C(5) O(3);MM=114.031694", "2-hydroxyisobutyrylation": "NT=hydroxyisobutyryl;AC=1849;CF=H(6) C(4) O(2);MM=86.036779", "S-Methyl Methyl phosphorothioate": "NT=MeMePhosphorothioate;AC=1868;CF=H(5) C(2) O P S;MM=107.979873", "Replacement of 3 protons by iron": "NT=Cation:Fe[III];AC=1870;CF=H(-3) Fe;MM=52.911464", "DTT adduct of cysteine": "NT=DTT;AC=1871;CF=H(8) C(4) O(2) S(2);MM=151.996571", "Sulfenic Acid specific probe": "NT=DYn-2;AC=1872;CF=H(13) C(11) O;MM=161.09664", "Acetone chemical artifact": "NT=MesitylOxide;AC=1873;CF=H(10) C(6) O;MM=98.073165", "formaldehyde induced modifications": "NT=methylol;AC=1875;CF=H(2) C O;MM=30.010565", "disuccinimidyl suberate (DSS)": "NT=Xlink:DSS;AC=1876;CF=H(10) C(8) O(2);MM=138.06808", "Tris-quenched monolink of DSS/BS3 crosslinker": "NT=Xlink:DSS[259];AC=1877;CF=H(21) C(12) N O(5);MM=259.141973", "Water-quenched monolink of DSSO crosslinker": "NT=Xlink:DSSO[176];AC=1878;CF=H(8) C(6) O(4) S;MM=176.01433", "Ammonia-quenched monolink of DSSO crosslinker": "NT=Xlink:DSSO[175];AC=1879;CF=H(9) C(6) N O(3) S;MM=175.030314", "Tris-quenched monolink of DSSO crosslinker": "NT=Xlink:DSSO[279];AC=1880;CF=H(17) C(10) N O(6) S;MM=279.077658", "Alkene fragment of DSSO crosslinker": "NT=Xlink:DSSO[54];AC=1881;CF=H(2) C(3) O;MM=54.010565", "Thiol fragment of DSSO crosslinker": "NT=Xlink:DSSO[86];AC=1882;CF=H(2) C(3) O S;MM=85.982635", "Sulfenic acid fragment of DSSO crosslinker": "NT=Xlink:DSSO[104];AC=1883;CF=H(4) C(3) O(2) S;MM=103.9932", "disuccinimidyl dibutyric urea CID cleavable cross-link": "NT=Xlink:BuUrBu;AC=1884;CF=H(12) C(9) N(2) O(3);MM=196.084792", "BuUr fragment of BuUrBu crosslinker": "NT=Xlink:BuUrBu[111];AC=1885;CF=H(5) C(5) N O(2);MM=111.032028", "Bu fragment of BuUrBu crosslinker": "NT=Xlink:BuUrBu[85];AC=1886;CF=H(7) C(4) N O;MM=85.052764", "Ammonia quenched monolink of BuUrBu crosslinker": "NT=Xlink:BuUrBu[213];AC=1887;CF=H(15) C(9) N(3) O(3);MM=213.111341", "Water quenched monolink of BuUrBu crosslinker": "NT=Xlink:BuUrBu[214];AC=1888;CF=H(14) C(9) N(2) O(4);MM=214.095357", "Tris quenched monolink of BuUrBu crosslinker": "NT=Xlink:BuUrBu[317];AC=1889;CF=H(23) C(13) N(3) O(6);MM=317.158686", "dimethyl 3,3\\'-dithiobispropionimidate": "NT=Xlink:DTBP;AC=1891;CF=H(8) C(6) N(2) S(2);MM=172.01289", "Disuccinimidyl tartrate crosslinker": "NT=Xlink:DST;AC=1892;CF=H(2) C(4) O(4);MM=113.995309", "dithiobis[succinimidylpropionate]": "NT=Xlink:DTSSP;AC=1893;CF=H(6) C(6) O(2) S(2);MM=173.980921", "succinimidyl 4-[N-maleimidomethyl]cyclohexane-1-carboxylate": "NT=Xlink:SMCC;AC=1895;CF=H(13) C(12) N O(3);MM=219.089543", "Intact DSSO crosslinker": "NT=Xlink:DSSO[158];AC=1896;CF=H(6) C(6) O(3) S;MM=158.003765", "Intact EGS cross-linker": "NT=Xlink:EGS[226];AC=1897;CF=H(10) C(10) O(6);MM=226.047738", "Intact DSS/BS3 crosslinker": "NT=Xlink:DSS[138];AC=1898;CF=H(10) C(8) O(2);MM=138.06808", "Intact BuUrBu crosslinker": "NT=Xlink:BuUrBu[196];AC=1899;CF=H(12) C(9) N(2) O(3);MM=196.084792", "Intact DTBP crosslinker": "NT=Xlink:DTBP[172];AC=1900;CF=H(8) C(6) N(2) S(2);MM=172.01289", "Intact DST crosslinker": "NT=Xlink:DST[114];AC=1901;CF=H(2) C(4) O(4);MM=113.995309", "Intact DSP/DTSSP crosslinker": "NT=Xlink:DTSSP[174];AC=1902;CF=H(6) C(6) O(2) S(2);MM=173.980921", "Intact SMCC cross-link": "NT=Xlink:SMCC[219];AC=1903;CF=H(13) C(12) N O(3);MM=219.089543", "Intact BS2-G crosslinker": "NT=Xlink:BS2G[96];AC=1905;CF=H(4) C(5) O(2);MM=96.021129", "Ammonium-quenched monolink of BS2-G crosslinker": "NT=Xlink:BS2G[113];AC=1906;CF=H(7) C(5) N O(2);MM=113.047679", "Water-quenched monolink of BS2-G crosslinker": "NT=Xlink:BS2G[114];AC=1907;CF=H(6) C(5) O(3);MM=114.031694", "Tris-quenched monolink of BS2-G crosslinker": "NT=Xlink:BS2G[217];AC=1908;CF=H(15) C(9) N O(5);MM=217.095023", "bis[sulfosuccinimidyl] glutarate": "NT=Xlink:BS2G;AC=1909;CF=H(4) C(5) O(2);MM=96.021129", "Replacement of 3 protons by aluminium": "NT=Cation:Al[III];AC=1910;CF=H(-3) Al;MM=23.958063", "Ammonia quenched monolink of DMP crosslinker": "NT=Xlink:DMP[139];AC=1911;CF=H(13) C(7) N(3);MM=139.110947", "Intact DMP crosslinker": "NT=Xlink:DMP[122];AC=1912;CF=H(10) C(7) N(2);MM=122.084398", "glyoxal-derived AGE": "NT=glyoxalAGE;AC=1913;CF=H(-2) C(2);MM=21.98435", "Methionine oxidation to aspartic semialdehyde": "NT=Met->AspSA;AC=1914;CF=H(-4) C(-1) O S(-1);MM=-32.008456", "In Bachi as Formylaspargine (typo?)": "NT=Formylasparagine;AC=1917;CF=H(-1) C(-1) N(-1) O(2);MM=4.97893", "aldehyde and ketone modifications": "NT=Carbonyl;AC=1918;CF=H(-2) O;MM=13.979265", "adduction of aflatoxin B1 Dialdehyde to lysine": "NT=AFB1_Dialdehyde;AC=1920;CF=H(10) C(17) O(6);MM=310.047738", "Proline oxidation to 5-hydroxy-2-aminovaleric acid": "NT=Pro->HAVA;AC=1922;CF=H(2) O;MM=18.010565", "Tryptophan oxidation to beta-unsaturated-2,4-bis-tryptophandione": "NT=Delta:H(-4)O(2);AC=1923;CF=H(-4) O(2);MM=27.958529", "Tryptophan oxidation to hydroxy-bis-tryptophandione": "NT=Delta:H(-4)O(3);AC=1924;CF=H(-4) O(3);MM=43.953444", "Tryptophan oxidation to dihydroxy-N-formaylkynurenine": "NT=Delta:O(4);AC=1925;CF=O(4);MM=63.979659", "methylglyoxal-derived carboxyethyllysine": "NT=Delta:H(4)C(3)O(2);AC=1926;CF=H(4) C(3) O(2);MM=72.021129", "methylglyoxal-derived argpyrimidine": "NT=Delta:H(4)C(5)O(1);AC=1927;CF=H(4) C(5) O;MM=80.026215", "crotonaldehyde-derived dimethyl-FDP-lysine": "NT=Delta:H(10)C(8)O(1);AC=1928;CF=H(10) C(8) O;MM=122.073165", "methylglyoxal-derived tetrahydropyrimidine": "NT=Delta:H(6)C(7)O(4);AC=1929;CF=H(6) C(7) O(4);MM=154.026609", "Pent HexNAc": "NT=Pent(1)HexNAc(1);AC=1931;CF=Pent HexNAc;MM=335.121631", "Hex(2) O(3) S": "NT=Hex(2)Sulf(1);AC=1932;CF=O(3) S Hex(2);MM=404.062462", "Hex:1 Pent:2 Me:1": "NT=Hex(1)Pent(2)Me(1);AC=1933;CF=Me Pent(2) Hex;MM=440.152991", "HexNAc(2) Sulf": "NT=HexNAc(2)Sulf(1);AC=1934;CF=O(3) S HexNAc(2);MM=486.11556", "Hex Pent(3) Me": "NT=Hex(1)Pent(3)Me(1);AC=1935;CF=Me Pent(3) Hex;MM=572.19525", "Hex(2) Pent(2)": "NT=Hex(2)Pent(2);AC=1936;CF=Pent(2) Hex(2);MM=588.190165", "Hex(2) Pent(2) Me": "NT=Hex(2)Pent(2)Me(1);AC=1937;CF=Me Pent(2) Hex(2);MM=602.205815", "Hex(4) HexA": "NT=Hex(4)HexA(1);AC=1938;CF=Hex(4) HexA;MM=824.243382", "Hex(2) HexNAc Pent HexA": "NT=Hex(2)HexNAc(1)Pent(1)HexA(1);AC=1939;CF=Pent Hex(2) HexA HexNAc;MM=835.259366", "Hex(3) HexNAc HexA": "NT=Hex(3)HexNAc(1)HexA(1);AC=1940;CF=Hex(3) HexA HexNAc;MM=865.269931", "Hex HexNAc(2) dHex(2) Sulf": "NT=Hex(1)HexNAc(2)dHex(2)Sulf(1);AC=1941;CF=O(3) S dHex(2) Hex HexNAc(2);MM=940.284201", "HexA(2) HexNAc(3)": "NT=HexA(2)HexNAc(3);AC=1942;CF=HexA(2) HexNAc(3);MM=961.302294", "dHex Hex(4) HexA": "NT=dHex(1)Hex(4)HexA(1);AC=1943;CF=dHex Hex(4) HexA;MM=970.301291", "Hex(5) HexA": "NT=Hex(5)HexA(1);AC=1944;CF=Hex(5) HexA;MM=986.296206", "Hex(4) HexA HexNAc": "NT=Hex(4)HexA(1)HexNAc(1);AC=1945;CF=Hex(4) HexA HexNAc;MM=1027.322755", "dHex(3) Hex(3) HexNAc": "NT=dHex(3)Hex(3)HexNAc(1);AC=1946;CF=dHex(3) Hex(3) HexNAc;MM=1127.41157", "Hex(6) HexNAc": "NT=Hex(6)HexNAc(1);AC=1947;CF=Hex(6) HexNAc;MM=1175.396314", "Sulf dHex Hex HexNAc(4)": "NT=Hex(1)HexNAc(4)dHex(1)Sulf(1);AC=1948;CF=Sulf dHex Hex HexNAc(4);MM=1200.385037", "dHex Hex(2) HexNAc NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(1)NeuAc(2);AC=1949;CF=dHex Hex(2) HexNAc NeuAc(2);MM=1255.433762", "dHex(3) Hex(3) HexNAc(2)": "NT=dHex(3)Hex(3)HexNAc(2);AC=1950;CF=dHex(3) Hex(3) HexNAc(2);MM=1330.490942", "dHex(2) Hex HexNAc(4) Sulf": "NT=dHex(2)Hex(1)HexNAc(4)Sulf(1);AC=1951;CF=Sulf dHex(2) Hex HexNAc(4);MM=1346.442946", "dHex Hex(2) HexNAc(4) Sulf(2)": "NT=dHex(1)Hex(2)HexNAc(4)Sulf(2);AC=1952;CF=Sulf(2) dHex Hex(2) HexNAc(4);MM=1442.394675", "Sulf dHex(2) Hex(3) HexNAc(3)": "NT=dHex(2)Hex(3)HexNAc(3)Sulf(1);AC=1954;CF=Sulf dHex(2) Hex(3) HexNAc(3);MM=1467.469221", "Me dHex(2) Hex(5) HexNAc(2)": "NT=dHex(2)Hex(5)HexNAc(2)Me(1);AC=1955;CF=Me dHex(2) Hex(5) HexNAc(2);MM=1522.554331", "Sulf(2) dHex(2) Hex(2) HexNAc(4)": "NT=dHex(2)Hex(2)HexNAc(4)Sulf(2);AC=1956;CF=Sulf(2) dHex(2) Hex(2) HexNAc(4);MM=1588.452584", "Hex(9) HexNAc": "NT=Hex(9)HexNAc(1);AC=1957;CF=Hex(9) HexNAc;MM=1661.554784", "dHex(3) Hex(2) HexNAc(4) Sulf(2)": "NT=dHex(3)Hex(2)HexNAc(4)Sulf(2);AC=1958;CF=Sulf(2) dHex(3) Hex(2) HexNAc(4);MM=1734.510493", "Hex(4) HexNAc(4) NeuGc": "NT=Hex(4)HexNAc(4)NeuGc(1);AC=1959;CF=Hex(4) HexNAc(4) NeuGc;MM=1767.619116", "dHex(4) Hex(3) HexNAc(2) NeuAc(1)": "NT=dHex(4)Hex(3)HexNAc(2)NeuAc(1);AC=1960;CF=dHex(4) Hex(3) HexNAc(2) NeuAc;MM=1767.644268", "Hex(3) HexNAc(5) NeuAc(1)": "NT=Hex(3)HexNAc(5)NeuAc(1);AC=1961;CF=Hex(3) HexNAc(5) NeuAc;MM=1792.65075", "Hex(10) HexNAc(1)": "NT=Hex(10)HexNAc(1);AC=1962;CF=Hex(10) HexNAc;MM=1823.607608", "dHex Hex(8) HexNAc(2)": "NT=dHex(1)Hex(8)HexNAc(2);AC=1963;CF=dHex Hex(8) HexNAc(2);MM=1848.639242", "Hex(3) HexNAc(4) NeuAc(2)": "NT=Hex(3)HexNAc(4)NeuAc(2);AC=1964;CF=Hex(3) HexNAc(4) NeuAc(2);MM=1880.666794", "dHex(2) Hex(3) HexNAc(4) NeuAc": "NT=dHex(2)Hex(3)HexNAc(4)NeuAc(1);AC=1965;CF=dHex(2) Hex(3) HexNAc(4) NeuAc;MM=1881.687195", "dHex(2) Hex(2) HexNAc(6) Sulf": "NT=dHex(2)Hex(2)HexNAc(6)Sulf(1);AC=1966;CF=Sulf dHex(2) Hex(2) HexNAc(6);MM=1914.654515", "Hex(5) HexNAc(4) NeuAc Ac": "NT=Hex(5)HexNAc(4)NeuAc(1)Ac(1);AC=1967;CF=Ac Hex(5) HexNAc(4) NeuAc;MM=1955.687589", "Hex(3) HexNAc(3) NeuAc(3)": "NT=Hex(3)HexNAc(3)NeuAc(3);AC=1968;CF=Hex(3) HexNAc(3) NeuAc(3);MM=1968.682838", "Hex(5) HexNAc(4) NeuAc Ac(2)": "NT=Hex(5)HexNAc(4)NeuAc(1)Ac(2);AC=1969;CF=Ac(2) Hex(5) HexNAc(4) NeuAc;MM=1997.698154", "Unidentified modification of 162.1258 found in open search": "NT=Unknown:162;AC=1970;CF=H(18) C(8) O(3);MM=162.125595", "Unidentified modification of 176.7462 found in open search": "NT=Unknown:177;AC=1971;CF=H(-7) O Fe(3);MM=176.744957", "Unidentified modification of 210.1616 found in open search": "NT=Unknown:210;AC=1972;CF=H(22) C(13) O(2);MM=210.16198", "Unidentified modification of 216.1002 found in open search": "NT=Unknown:216;AC=1973;CF=H(16) C(10) O(5);MM=216.099774", "Unidentified modification of 234.0742 found in open search": "NT=Unknown:234;AC=1974;CF=H(14) C(9) O(7);MM=234.073953", "Unidentified modification of 248.1986 found in open search": "NT=Unknown:248;AC=1975;CF=H(28) C(13) O(4);MM=248.19876", "Unidentified modification of 249.981 found in open search": "NT=Unknown:250;AC=1976;CF=H(4) C(10) N O(5) S;MM=249.981018", "Unidentified modification of 301.9864 found in open search": "NT=Unknown:302;AC=1977;CF=H(8) C(4) N(5) O(7) S(2);MM=301.986514", "Unidentified modification of 306.0952 found in open search": "NT=Unknown:306;AC=1978;CF=H(18) C(12) O(9);MM=306.095082", "Unidentified modification of 420.0506 found in open search": "NT=Unknown:420;AC=1979;CF=H(24) C(12) N(2) O(6) S(4);MM=420.051719", "O-diethylphosphothione": "NT=Diethylphosphothione;AC=1986;CF=H(9) C(4) O(2) P S;MM=152.006087", "O-dimethylphosphothione": "NT=Dimethylphosphothione;AC=1987;CF=H(5) C(2) O(2) P S;MM=123.974787", "O-methylphosphothione": "NT=monomethylphosphothione;AC=1989;CF=H(3) C O(2) P S;MM=109.959137", "Ubiquitin D (FAT10) leaving after chymotrypsin digestion Cys-Ile-Gly-Gly": "NT=CIGG;AC=1990;CF=H(22) C(13) N(4) O(4) S;MM=330.136176", "Ubiquitin D (FAT10) leaving after trypsin digestion Gly-Asn-Leu-Leu-Phe-Leu-Ala-Cys-Tyr-Cys-Ile-Gly-Gly": "NT=GNLLFLACYCIGG;AC=1991;CF=H(92) C(61) N(14) O(15) S(2);MM=1324.6308", "5-glutamyl serotonin": "NT=serotonylation;AC=1992;CF=H(9) C(10) N O;MM=159.068414", "heavy tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative": "NT=TMPP-Ac:13C(9);AC=1993;CF=H(33) C(20) 13C(9) O(10) P;MM=581.211328", "DST crosslinker cleaved by sodium periodate": "NT=Xlink:DST[56];AC=1999;CF=C(2) O(2);MM=55.989829", "NHS-Diazirine crosslinker": "NT=Xlink:SDA;AC=2000;CF=H(6) C(5) O;MM=82.041865", "carbobenzoxy-L-glutaminyl-glycine": "NT=ZQG;AC=2001;CF=H(16) C(15) N(2) O(6);MM=320.100836", "O-Dichloroethylphosphate": "NT=Haloxon;AC=2006;CF=H(7) C(4) O(3) P Cl(2);MM=203.950987", "S-methyl amino phosphinate": "NT=Methamidophos-S;AC=2007;CF=H(4) C N O P S;MM=108.975121", "O-methyl amino phosphinate": "NT=Methamidophos-O;AC=2008;CF=H(4) C N O(2) P;MM=92.997965", "Loss of O2; nitro photochemical decomposition": "NT=Nitrene;AC=2014;CF=H(-1) N;MM=12.995249", "Super Heavy Tandem Mass Tag": "NT=shTMT;AC=2015;CF=H(20) C(3) 13C(9) 15N(2) O(2);MM=235.176741", "TMTpro 16plex Tandem Mass Tag": "NT=TMTpro;AC=2016;CF=H(25) C(8) 13C(7) N 15N(2) O(3);MM=304.207146", "Native TMTpro Tandem Mass Tag": "NT=TMTpro_zero;AC=2017;CF=H(25) C(15) N(3) O(3);MM=295.189592", "carbodiimide crosslinker": "NT=Xlink:EDC;AC=2018;CF=H(-2) O(-1);MM=-18.010565", "Intact disulfide bridge": "NT=Xlink:Disulfide;AC=2020;CF=H(-2);MM=-2.01565", "Glycosylation of Serine/Threonine residues with KDO": "NT=Ser/Thr-KDO;AC=2022;CF=H(12) C(8) O(7);MM=220.058303", "andrographolide with the loss of H2O": "NT=Andro-H2O;AC=2025;CF=H(28) C(20) O(4);MM=332.19876", "Isopeptide bond formation with loss of ammonia": "NT=Xlink:KQisopeptide;AC=2026;CF=H(-3) N(-1);MM=-17.026549", "Photo-induced histidine adduct": "NT=His+O(2);AC=2027;CF=H(7) C(6) N(3) O(3);MM=169.048741", "A3G3S3": "NT=Hex(6)HexNAc(5)NeuAc(3);AC=2028;CF=Hex(6) HexNAc(5) NeuAc(3);MM=2861.000054", "A4G4": "NT=Hex(7)HexNAc(6);AC=2029;CF=Hex(7) HexNAc(6);MM=2352.846", "Photo-induced Methionine Adduct": "NT=Met+O(2);AC=2033;CF=H(9) C(5) N O(3) S;MM=163.030314", "Photo-induced Glycine Adduct": "NT=Gly+O(2);AC=2034;CF=H(3) C(2) N O(3);MM=89.011293", "Photo-induced Proline adduct": "NT=Pro+O(2);AC=2035;CF=H(7) C(5) N O(3);MM=129.042593", "Photo-induced Lysine adduct": "NT=Lys+O(2);AC=2036;CF=H(12) C(6) N(2) O(3);MM=160.084792", "Photo-induced Glutamate adduct": "NT=Glu+O(2);AC=2037;CF=H(7) C(5) N O(5);MM=161.032422", "addition of lophotoxin to tyrosine": "NT=LTX+Lophotoxin;AC=2039;CF=H(24) C(22) O(8);MM=416.147118", "MBS_233p24 plus peptide 1250p53": "NT=MBS+peptide;AC=2040;CF=H(108) C(81) N(7) O(19);MM=1482.77", "3-hydroxybenzyl phosphate": "NT=3-hydroxybenzyl-phosphate;AC=2041;CF=H(7) C(7) O(4) P;MM=186.008196", "phenyl phosphate": "NT=phenyl-phosphate;AC=2042;CF=H(5) C(6) O(3) P;MM=155.997631", "RNA-protein UVC-crosslinked, hydrofluoride-digested uridine adduct": "NT=RBS-ID_Uridine;AC=2044;CF=H(12) C(9) N(2) O(6);MM=244.069536", "Super Heavy TMTpro": "NT=shTMTpro;AC=2050;CF=H(25) 13C(15) 15N(3) O(3);MM=313.231019", "Intact DADPS Biotin Alkyne tag": "NT=Biotin:Aha-DADPS;AC=2052;CF=H(70) C(42) N(8) O(11) Si S;MM=922.465403", "Intact PC Biotin Alkyne tag": "NT=Biotin:Aha-PC;AC=2053;CF=H(38) C(29) N(8) O(10) S;MM=690.24316", "RNA-protein UVA-crosslinked, hydrofluoride-digested 4-thiouridine adduct": "NT=pRBS-ID_4-thiouridine;AC=2054;CF=H(10) C(9) N(2) O(5);MM=226.058972", "RNA-protein UVA-crosslinked, hydrofluoride-digested 6-thioguanosine adduct": "NT=pRBS-ID_6-thioguanosine;AC=2055;CF=H(11) C(10) N(5) O(4);MM=265.081104", "Iodoacetamido-LC-Phosphonic Acid derivative": "NT=6C-CysPAT;AC=2057;CF=H(16) C(8) N O(4) P;MM=221.081695", "Intact DSPP/TBDSPP crosslinker": "NT=Xlink:DSPP[210];AC=2058;CF=H(3) C(8) O(5) P;MM=209.97181", "Water-quenched monolink of DSPP/TBDSPP crosslinker": "NT=Xlink:DSPP[228];AC=2059;CF=H(5) C(8) O(6) P;MM=227.982375", "Tris-quenched monolink of DSPP/TBDSPP crosslinker": "NT=Xlink:DSPP[331];AC=2060;CF=H(14) C(12) N O(8) P;MM=331.045704", "Ammonia-quenched monolink of DSPP/TBDSPP crosslinker": "NT=Xlink:DSPP[226];AC=2061;CF=H(5) C(8) N O(5) P;MM=225.990534", "desthiobiotinylation of cysteine with DBIA probe": "NT=DBIA;AC=2062;CF=H(24) C(14) N(4) O(3);MM=296.184841", "Monomodification of N\u03b3-propargyl-L-Gln probe with clicked desthiobiotin-azide": "NT=Mono_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2067;CF=H(44) C(26) N(8) O(8);MM=596.328211", "Dimodification of L-Glu and N\u03b3-propargyl-L-Gln probe with clicked desthiobiotin-azide": "NT=Di_L-Glu_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2068;CF=H(51) C(31) N(9) O(10);MM=709.375889", "Dimodification of L-Gln and N\u03b3-propargyl-L-Gln probe with clicked desthiobiotin-azide": "NT=Di_L-Gln_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2069;CF=H(52) C(31) N(10) O(9);MM=708.391873", "Monomodification with glutamine": "NT=L-Gln;AC=2070;CF=H(8) C(5) N(2) O(2);MM=128.058578", "Glyceroylation": "NT=Glyceroyl;AC=2072;CF=H(4) C(3) O(3);MM=88.016044", "probe; AMP analogon": "NT=N6pAMP;AC=2073;CF=H(14) C(13) N(5) O(6) P;MM=367.06817", "Dabcyl C2 Maleimide": "NT=DabMal;AC=2074;CF=H(21) C(21) N(5) O(3);MM=391.16444", "Thiol blocking reagent": "NT=NBF;AC=2079;CF=H C(6) N(3) O(3);MM=163.001791", "Dimedone-Based Chemical Probes": "NT=DCP;AC=2080;CF=H(12) C(9) O(3);MM=168.078644", "Ethynlation of cysteine residues": "NT=Ethynylation;AC=2081;CF=C(2);MM=24.0"} \ No newline at end of file diff --git a/.history/unimod_dict_20240927130036.json b/.history/unimod_dict_20240927130036.json new file mode 100644 index 0000000..0fdc159 --- /dev/null +++ b/.history/unimod_dict_20240927130036.json @@ -0,0 +1 @@ +{"Acetyl": "NT=Acetyl;AC=1;", "Amidated": "NT=Amidated;AC=2;", "Biotin": "NT=Biotin;AC=3;", "Carbamidomethyl": "NT=Carbamidomethyl;AC=4;", "Carbamyl": "NT=Carbamyl;AC=5;", "Carboxymethyl": "NT=Carboxymethyl;AC=6;", "Deamidated": "NT=Deamidated;AC=7;", "ICAT-G": "NT=ICAT-G;AC=8;", "ICAT-G:2H(8)": "NT=ICAT-G:2H(8);AC=9;", "Met->Hse": "NT=Met->Hse;AC=10;", "Met->Hsl": "NT=Met->Hsl;AC=11;", "ICAT-D:2H(8)": "NT=ICAT-D:2H(8);AC=12;", "ICAT-D": "NT=ICAT-D;AC=13;", "NIPCAM": "NT=NIPCAM;AC=17;", "PEO-Iodoacetyl-LC-Biotin": "NT=PEO-Iodoacetyl-LC-Biotin;AC=20;", "Phospho": "NT=Phospho;AC=21;", "Dehydrated": "NT=Dehydrated;AC=23;", "Propionamide": "NT=Propionamide;AC=24;", "Pyridylacetyl": "NT=Pyridylacetyl;AC=25;", "Pyro-carbamidomethyl": "NT=Pyro-carbamidomethyl;AC=26;", "Glu->pyro-Glu": "NT=Glu->pyro-Glu;AC=27;", "Gln->pyro-Glu": "NT=Gln->pyro-Glu;AC=28;", "SMA": "NT=SMA;AC=29;", "Cation:Na": "NT=Cation:Na;AC=30;", "Pyridylethyl": "NT=Pyridylethyl;AC=31;", "Methyl": "NT=Methyl;AC=34;", "Oxidation": "NT=Oxidation;AC=35;", "Dimethyl": "NT=Dimethyl;AC=36;", "Trimethyl": "NT=Trimethyl;AC=37;", "Methylthio": "NT=Methylthio;AC=39;", "Sulfo": "NT=Sulfo;AC=40;", "Hex": "NT=Hex;AC=41;", "Lipoyl": "NT=Lipoyl;AC=42;", "HexNAc": "NT=HexNAc;AC=43;", "Farnesyl": "NT=Farnesyl;AC=44;", "Myristoyl": "NT=Myristoyl;AC=45;", "PyridoxalPhosphate": "NT=PyridoxalPhosphate;AC=46;", "Palmitoyl": "NT=Palmitoyl;AC=47;", "GeranylGeranyl": "NT=GeranylGeranyl;AC=48;", "Phosphopantetheine": "NT=Phosphopantetheine;AC=49;", "FAD": "NT=FAD;AC=50;", "Tripalmitate": "NT=Tripalmitate;AC=51;", "Guanidinyl": "NT=Guanidinyl;AC=52;", "HNE": "NT=HNE;AC=53;", "Glucuronyl": "NT=Glucuronyl;AC=54;", "Glutathione": "NT=Glutathione;AC=55;", "Acetyl:2H(3)": "NT=Acetyl:2H(3);AC=56;", "Propionyl": "NT=Propionyl;AC=58;", "Propionyl:13C(3)": "NT=Propionyl:13C(3);AC=59;", "GIST-Quat": "NT=GIST-Quat;AC=60;", "GIST-Quat:2H(3)": "NT=GIST-Quat:2H(3);AC=61;", "GIST-Quat:2H(6)": "NT=GIST-Quat:2H(6);AC=62;", "GIST-Quat:2H(9)": "NT=GIST-Quat:2H(9);AC=63;", "Succinyl": "NT=Succinyl;AC=64;", "Succinyl:2H(4)": "NT=Succinyl:2H(4);AC=65;", "Succinyl:13C(4)": "NT=Succinyl:13C(4);AC=66;", "Iminobiotin": "NT=Iminobiotin;AC=89;", "ESP": "NT=ESP;AC=90;", "ESP:2H(10)": "NT=ESP:2H(10);AC=91;", "NHS-LC-Biotin": "NT=NHS-LC-Biotin;AC=92;", "EDT-maleimide-PEO-biotin": "NT=EDT-maleimide-PEO-biotin;AC=93;", "IMID": "NT=IMID;AC=94;", "IMID:2H(4)": "NT=IMID:2H(4);AC=95;", "Propionamide:2H(3)": "NT=Propionamide:2H(3);AC=97;", "ICAT-C": "NT=ICAT-C;AC=105;", "ICAT-C:13C(9)": "NT=ICAT-C:13C(9);AC=106;", "FormylMet": "NT=FormylMet;AC=107;", "Nethylmaleimide": "NT=Nethylmaleimide;AC=108;", "OxLysBiotinRed": "NT=OxLysBiotinRed;AC=112;", "OxLysBiotin": "NT=OxLysBiotin;AC=113;", "OxProBiotinRed": "NT=OxProBiotinRed;AC=114;", "OxProBiotin": "NT=OxProBiotin;AC=115;", "OxArgBiotin": "NT=OxArgBiotin;AC=116;", "OxArgBiotinRed": "NT=OxArgBiotinRed;AC=117;", "EDT-iodoacetyl-PEO-biotin": "NT=EDT-iodoacetyl-PEO-biotin;AC=118;", "IBTP": "NT=IBTP;AC=119;", "GG": "NT=GG;AC=121;", "Formyl": "NT=Formyl;AC=122;", "ICAT-H": "NT=ICAT-H;AC=123;", "ICAT-H:13C(6)": "NT=ICAT-H:13C(6);AC=124;", "Xlink:DTSSP[88]": "NT=Xlink:DTSSP[88];AC=126;", "Fluoro": "NT=Fluoro;AC=127;", "Fluorescein": "NT=Fluorescein;AC=128;", "Iodo": "NT=Iodo;AC=129;", "Diiodo": "NT=Diiodo;AC=130;", "Triiodo": "NT=Triiodo;AC=131;", "Myristoleyl": "NT=Myristoleyl;AC=134;", "Myristoyl+Delta:H(-4)": "NT=Myristoyl+Delta:H(-4);AC=135;", "Benzoyl": "NT=Benzoyl;AC=136;", "Hex(5)HexNAc(2)": "NT=Hex(5)HexNAc(2);AC=137;", "Dansyl": "NT=Dansyl;AC=139;", "a-type-ion": "NT=a-type-ion;AC=140;", "Amidine": "NT=Amidine;AC=141;", "HexNAc(1)dHex(1)": "NT=HexNAc(1)dHex(1);AC=142;", "HexNAc(2)": "NT=HexNAc(2);AC=143;", "Hex(3)": "NT=Hex(3);AC=144;", "HexNAc(1)dHex(2)": "NT=HexNAc(1)dHex(2);AC=145;", "Hex(1)HexNAc(1)dHex(1)": "NT=Hex(1)HexNAc(1)dHex(1);AC=146;", "HexNAc(2)dHex(1)": "NT=HexNAc(2)dHex(1);AC=147;", "Hex(1)HexNAc(2)": "NT=Hex(1)HexNAc(2);AC=148;", "Hex(1)HexNAc(1)NeuAc(1)": "NT=Hex(1)HexNAc(1)NeuAc(1);AC=149;", "HexNAc(2)dHex(2)": "NT=HexNAc(2)dHex(2);AC=150;", "Hex(1)HexNAc(2)Pent(1)": "NT=Hex(1)HexNAc(2)Pent(1);AC=151;", "Hex(1)HexNAc(2)dHex(1)": "NT=Hex(1)HexNAc(2)dHex(1);AC=152;", "Hex(2)HexNAc(2)": "NT=Hex(2)HexNAc(2);AC=153;", "Hex(3)HexNAc(1)Pent(1)": "NT=Hex(3)HexNAc(1)Pent(1);AC=154;", "Hex(1)HexNAc(2)dHex(1)Pent(1)": "NT=Hex(1)HexNAc(2)dHex(1)Pent(1);AC=155;", "Hex(1)HexNAc(2)dHex(2)": "NT=Hex(1)HexNAc(2)dHex(2);AC=156;", "Hex(2)HexNAc(2)Pent(1)": "NT=Hex(2)HexNAc(2)Pent(1);AC=157;", "Hex(2)HexNAc(2)dHex(1)": "NT=Hex(2)HexNAc(2)dHex(1);AC=158;", "Hex(3)HexNAc(2)": "NT=Hex(3)HexNAc(2);AC=159;", "Hex(1)HexNAc(1)NeuAc(2)": "NT=Hex(1)HexNAc(1)NeuAc(2);AC=160;", "Hex(3)HexNAc(2)Phos(1)": "NT=Hex(3)HexNAc(2)Phos(1);AC=161;", "Delta:S(-1)Se(1)": "NT=Delta:S(-1)Se(1);AC=162;", "Delta:H(-1)N(-1)18O(1)": "NT=Delta:H(-1)N(-1)18O(1);AC=170;", "NBS:13C(6)": "NT=NBS:13C(6);AC=171;", "NBS": "NT=NBS;AC=172;", "BHT": "NT=BHT;AC=176;", "DAET": "NT=DAET;AC=178;", "Label:13C(9)": "NT=Label:13C(9);AC=184;", "Label:13C(9)+Phospho": "NT=Label:13C(9)+Phospho;AC=185;", "HPG": "NT=HPG;AC=186;", "2HPG": "NT=2HPG;AC=187;", "Label:13C(6)": "NT=Label:13C(6);AC=188;", "Label:18O(2)": "NT=Label:18O(2);AC=193;", "AccQTag": "NT=AccQTag;AC=194;", "QAT": "NT=QAT;AC=195;", "QAT:2H(3)": "NT=QAT:2H(3);AC=196;", "EQAT": "NT=EQAT;AC=197;", "EQAT:2H(5)": "NT=EQAT:2H(5);AC=198;", "Dimethyl:2H(4)": "NT=Dimethyl:2H(4);AC=199;", "Ethanedithiol": "NT=Ethanedithiol;AC=200;", "Delta:H(6)C(6)O(1)": "NT=Delta:H(6)C(6)O(1);AC=205;", "Delta:H(4)C(3)O(1)": "NT=Delta:H(4)C(3)O(1);AC=206;", "Delta:H(2)C(3)": "NT=Delta:H(2)C(3);AC=207;", "Delta:H(4)C(6)": "NT=Delta:H(4)C(6);AC=208;", "Delta:H(8)C(6)O(2)": "NT=Delta:H(8)C(6)O(2);AC=209;", "NEIAA": "NT=NEIAA;AC=211;", "NEIAA:2H(5)": "NT=NEIAA:2H(5);AC=212;", "ADP-Ribosyl": "NT=ADP-Ribosyl;AC=213;", "iTRAQ4plex": "NT=iTRAQ4plex;AC=214;", "IGBP": "NT=IGBP;AC=243;", "Crotonaldehyde": "NT=Crotonaldehyde;AC=253;", "Delta:H(2)C(2)": "NT=Delta:H(2)C(2);AC=254;", "Delta:H(4)C(2)": "NT=Delta:H(4)C(2);AC=255;", "Delta:H(4)C(3)": "NT=Delta:H(4)C(3);AC=256;", "Label:18O(1)": "NT=Label:18O(1);AC=258;", "Label:13C(6)15N(2)": "NT=Label:13C(6)15N(2);AC=259;", "Thiophospho": "NT=Thiophospho;AC=260;", "SPITC": "NT=SPITC;AC=261;", "Label:2H(3)": "NT=Label:2H(3);AC=262;", "PET": "NT=PET;AC=264;", "Label:13C(6)15N(4)": "NT=Label:13C(6)15N(4);AC=267;", "Label:13C(5)15N(1)": "NT=Label:13C(5)15N(1);AC=268;", "Label:13C(9)15N(1)": "NT=Label:13C(9)15N(1);AC=269;", "Cytopiloyne": "NT=Cytopiloyne;AC=270;", "Cytopiloyne+water": "NT=Cytopiloyne+water;AC=271;", "CAF": "NT=CAF;AC=272;", "Nitrosyl": "NT=Nitrosyl;AC=275;", "AEBS": "NT=AEBS;AC=276;", "Ethanolyl": "NT=Ethanolyl;AC=278;", "Ethyl": "NT=Ethyl;AC=280;", "CoenzymeA": "NT=CoenzymeA;AC=281;", "Methyl:2H(2)": "NT=Methyl:2H(2);AC=284;", "SulfanilicAcid": "NT=SulfanilicAcid;AC=285;", "SulfanilicAcid:13C(6)": "NT=SulfanilicAcid:13C(6);AC=286;", "Trp->Oxolactone": "NT=Trp->Oxolactone;AC=288;", "Biotin-PEO-Amine": "NT=Biotin-PEO-Amine;AC=289;", "Biotin-HPDP": "NT=Biotin-HPDP;AC=290;", "Delta:Hg(1)": "NT=Delta:Hg(1);AC=291;", "IodoU-AMP": "NT=IodoU-AMP;AC=292;", "CAMthiopropanoyl": "NT=CAMthiopropanoyl;AC=293;", "IED-Biotin": "NT=IED-Biotin;AC=294;", "dHex": "NT=dHex;AC=295;", "Methyl:2H(3)": "NT=Methyl:2H(3);AC=298;", "Carboxy": "NT=Carboxy;AC=299;", "Bromobimane": "NT=Bromobimane;AC=301;", "Menadione": "NT=Menadione;AC=302;", "DeStreak": "NT=DeStreak;AC=303;", "dHex(1)Hex(3)HexNAc(4)": "NT=dHex(1)Hex(3)HexNAc(4);AC=305;", "dHex(1)Hex(4)HexNAc(4)": "NT=dHex(1)Hex(4)HexNAc(4);AC=307;", "dHex(1)Hex(5)HexNAc(4)": "NT=dHex(1)Hex(5)HexNAc(4);AC=308;", "Hex(3)HexNAc(4)": "NT=Hex(3)HexNAc(4);AC=309;", "Hex(4)HexNAc(4)": "NT=Hex(4)HexNAc(4);AC=310;", "Hex(5)HexNAc(4)": "NT=Hex(5)HexNAc(4);AC=311;", "Cysteinyl": "NT=Cysteinyl;AC=312;", "Lys-loss": "NT=Lys-loss;AC=313;", "Nmethylmaleimide": "NT=Nmethylmaleimide;AC=314;", "DimethylpyrroleAdduct": "NT=DimethylpyrroleAdduct;AC=316;", "Delta:H(2)C(5)": "NT=Delta:H(2)C(5);AC=318;", "Delta:H(2)C(3)O(1)": "NT=Delta:H(2)C(3)O(1);AC=319;", "Nethylmaleimide+water": "NT=Nethylmaleimide+water;AC=320;", "Xlink:B10621": "NT=Xlink:B10621;AC=323;", "Xlink:DTBP[87]": "NT=Xlink:DTBP[87];AC=324;", "FP-Biotin": "NT=FP-Biotin;AC=325;", "Delta:H(4)C(2)O(-1)S(1)": "NT=Delta:H(4)C(2)O(-1)S(1);AC=327;", "Methyl:2H(3)13C(1)": "NT=Methyl:2H(3)13C(1);AC=329;", "Dimethyl:2H(6)13C(2)": "NT=Dimethyl:2H(6)13C(2);AC=330;", "Thiophos-S-S-biotin": "NT=Thiophos-S-S-biotin;AC=332;", "Can-FP-biotin": "NT=Can-FP-biotin;AC=333;", "HNE+Delta:H(2)": "NT=HNE+Delta:H(2);AC=335;", "Methylamine": "NT=Methylamine;AC=337;", "Bromo": "NT=Bromo;AC=340;", "Amino": "NT=Amino;AC=342;", "Argbiotinhydrazide": "NT=Argbiotinhydrazide;AC=343;", "Arg->GluSA": "NT=Arg->GluSA;AC=344;", "Trioxidation": "NT=Trioxidation;AC=345;", "His->Asn": "NT=His->Asn;AC=348;", "His->Asp": "NT=His->Asp;AC=349;", "Trp->Hydroxykynurenin": "NT=Trp->Hydroxykynurenin;AC=350;", "Trp->Kynurenin": "NT=Trp->Kynurenin;AC=351;", "Lys->Allysine": "NT=Lys->Allysine;AC=352;", "Lysbiotinhydrazide": "NT=Lysbiotinhydrazide;AC=353;", "Nitro": "NT=Nitro;AC=354;", "probiotinhydrazide": "NT=probiotinhydrazide;AC=357;", "Pro->pyro-Glu": "NT=Pro->pyro-Glu;AC=359;", "Pro->Pyrrolidinone": "NT=Pro->Pyrrolidinone;AC=360;", "Thrbiotinhydrazide": "NT=Thrbiotinhydrazide;AC=361;", "Diisopropylphosphate": "NT=Diisopropylphosphate;AC=362;", "Isopropylphospho": "NT=Isopropylphospho;AC=363;", "ICPL:13C(6)": "NT=ICPL:13C(6);AC=364;", "ICPL": "NT=ICPL;AC=365;", "Deamidated:18O(1)": "NT=Deamidated:18O(1);AC=366;", "Cys->Dha": "NT=Cys->Dha;AC=368;", "Pro->Pyrrolidone": "NT=Pro->Pyrrolidone;AC=369;", "HMVK": "NT=HMVK;AC=371;", "Arg->Orn": "NT=Arg->Orn;AC=372;", "Dehydro": "NT=Dehydro;AC=374;", "Diphthamide": "NT=Diphthamide;AC=375;", "Hydroxyfarnesyl": "NT=Hydroxyfarnesyl;AC=376;", "Diacylglycerol": "NT=Diacylglycerol;AC=377;", "Carboxyethyl": "NT=Carboxyethyl;AC=378;", "Hypusine": "NT=Hypusine;AC=379;", "Retinylidene": "NT=Retinylidene;AC=380;", "Lys->AminoadipicAcid": "NT=Lys->AminoadipicAcid;AC=381;", "Cys->PyruvicAcid": "NT=Cys->PyruvicAcid;AC=382;", "Ammonia-loss": "NT=Ammonia-loss;AC=385;", "Phycocyanobilin": "NT=Phycocyanobilin;AC=387;", "Phycoerythrobilin": "NT=Phycoerythrobilin;AC=388;", "Phytochromobilin": "NT=Phytochromobilin;AC=389;", "Heme": "NT=Heme;AC=390;", "Molybdopterin": "NT=Molybdopterin;AC=391;", "Quinone": "NT=Quinone;AC=392;", "Glucosylgalactosyl": "NT=Glucosylgalactosyl;AC=393;", "GPIanchor": "NT=GPIanchor;AC=394;", "PhosphoribosyldephosphoCoA": "NT=PhosphoribosyldephosphoCoA;AC=395;", "GlycerylPE": "NT=GlycerylPE;AC=396;", "Triiodothyronine": "NT=Triiodothyronine;AC=397;", "Thyroxine": "NT=Thyroxine;AC=398;", "Tyr->Dha": "NT=Tyr->Dha;AC=400;", "Didehydro": "NT=Didehydro;AC=401;", "Cys->Oxoalanine": "NT=Cys->Oxoalanine;AC=402;", "Ser->LacticAcid": "NT=Ser->LacticAcid;AC=403;", "Phosphoadenosine": "NT=Phosphoadenosine;AC=405;", "Hydroxycinnamyl": "NT=Hydroxycinnamyl;AC=407;", "Glycosyl": "NT=Glycosyl;AC=408;", "FMNH": "NT=FMNH;AC=409;", "Archaeol": "NT=Archaeol;AC=410;", "Phenylisocyanate": "NT=Phenylisocyanate;AC=411;", "Phenylisocyanate:2H(5)": "NT=Phenylisocyanate:2H(5);AC=412;", "Phosphoguanosine": "NT=Phosphoguanosine;AC=413;", "Hydroxymethyl": "NT=Hydroxymethyl;AC=414;", "MolybdopterinGD+Delta:S(-1)Se(1)": "NT=MolybdopterinGD+Delta:S(-1)Se(1);AC=415;", "Dipyrrolylmethanemethyl": "NT=Dipyrrolylmethanemethyl;AC=416;", "PhosphoUridine": "NT=PhosphoUridine;AC=417;", "Glycerophospho": "NT=Glycerophospho;AC=419;", "Carboxy->Thiocarboxy": "NT=Carboxy->Thiocarboxy;AC=420;", "Sulfide": "NT=Sulfide;AC=421;", "PyruvicAcidIminyl": "NT=PyruvicAcidIminyl;AC=422;", "Delta:Se(1)": "NT=Delta:Se(1);AC=423;", "MolybdopterinGD": "NT=MolybdopterinGD;AC=424;", "Dioxidation": "NT=Dioxidation;AC=425;", "Octanoyl": "NT=Octanoyl;AC=426;", "PhosphoHexNAc": "NT=PhosphoHexNAc;AC=428;", "PhosphoHex": "NT=PhosphoHex;AC=429;", "Palmitoleyl": "NT=Palmitoleyl;AC=431;", "Cholesterol": "NT=Cholesterol;AC=432;", "Didehydroretinylidene": "NT=Didehydroretinylidene;AC=433;", "CHDH": "NT=CHDH;AC=434;", "Methylpyrroline": "NT=Methylpyrroline;AC=435;", "Hydroxyheme": "NT=Hydroxyheme;AC=436;", "MicrocinC7": "NT=MicrocinC7;AC=437;", "Cyano": "NT=Cyano;AC=438;", "Diironsubcluster": "NT=Diironsubcluster;AC=439;", "Amidino": "NT=Amidino;AC=440;", "FMN": "NT=FMN;AC=442;", "FMNC": "NT=FMNC;AC=443;", "CuSMo": "NT=CuSMo;AC=444;", "Hydroxytrimethyl": "NT=Hydroxytrimethyl;AC=445;", "Deoxy": "NT=Deoxy;AC=447;", "Microcin": "NT=Microcin;AC=448;", "Decanoyl": "NT=Decanoyl;AC=449;", "Glu": "NT=Glu;AC=450;", "GluGlu": "NT=GluGlu;AC=451;", "GluGluGlu": "NT=GluGluGlu;AC=452;", "GluGluGluGlu": "NT=GluGluGluGlu;AC=453;", "HexN": "NT=HexN;AC=454;", "Xlink:DMP[154]": "NT=Xlink:DMP[154];AC=455;", "Xlink:DMP": "NT=Xlink:DMP;AC=456;", "NDA": "NT=NDA;AC=457;", "SPITC:13C(6)": "NT=SPITC:13C(6);AC=464;", "AEC-MAEC": "NT=AEC-MAEC;AC=472;", "TMAB": "NT=TMAB;AC=476;", "TMAB:2H(9)": "NT=TMAB:2H(9);AC=477;", "FTC": "NT=FTC;AC=478;", "Label:2H(4)": "NT=Label:2H(4);AC=481;", "DHP": "NT=DHP;AC=488;", "Hep": "NT=Hep;AC=490;", "BADGE": "NT=BADGE;AC=493;", "CyDye-Cy3": "NT=CyDye-Cy3;AC=494;", "CyDye-Cy5": "NT=CyDye-Cy5;AC=495;", "BHTOH": "NT=BHTOH;AC=498;", "IGBP:13C(2)": "NT=IGBP:13C(2);AC=499;", "Nmethylmaleimide+water": "NT=Nmethylmaleimide+water;AC=500;", "PyMIC": "NT=PyMIC;AC=501;", "LG-lactam-K": "NT=LG-lactam-K;AC=503;", "LG-Hlactam-K": "NT=LG-Hlactam-K;AC=504;", "LG-lactam-R": "NT=LG-lactam-R;AC=505;", "LG-Hlactam-R": "NT=LG-Hlactam-R;AC=506;", "Dimethyl:2H(4)13C(2)": "NT=Dimethyl:2H(4)13C(2);AC=510;", "Hex(2)": "NT=Hex(2);AC=512;", "C8-QAT": "NT=C8-QAT;AC=513;", "PropylNAGthiazoline": "NT=PropylNAGthiazoline;AC=514;", "FNEM": "NT=FNEM;AC=515;", "Diethyl": "NT=Diethyl;AC=518;", "BisANS": "NT=BisANS;AC=519;", "Piperidine": "NT=Piperidine;AC=520;", "Maleimide-PEO2-Biotin": "NT=Maleimide-PEO2-Biotin;AC=522;", "Sulfo-NHS-LC-LC-Biotin": "NT=Sulfo-NHS-LC-LC-Biotin;AC=523;", "CLIP_TRAQ_2": "NT=CLIP_TRAQ_2;AC=525;", "Dethiomethyl": "NT=Dethiomethyl;AC=526;", "Methyl+Deamidated": "NT=Methyl+Deamidated;AC=528;", "Delta:H(5)C(2)": "NT=Delta:H(5)C(2);AC=529;", "Cation:K": "NT=Cation:K;AC=530;", "Cation:Cu[I]": "NT=Cation:Cu[I];AC=531;", "iTRAQ4plex114": "NT=iTRAQ4plex114;AC=532;", "iTRAQ4plex115": "NT=iTRAQ4plex115;AC=533;", "Dibromo": "NT=Dibromo;AC=534;", "LRGG": "NT=LRGG;AC=535;", "CLIP_TRAQ_3": "NT=CLIP_TRAQ_3;AC=536;", "CLIP_TRAQ_4": "NT=CLIP_TRAQ_4;AC=537;", "Biotin:Cayman-10141": "NT=Biotin:Cayman-10141;AC=538;", "Biotin:Cayman-10013": "NT=Biotin:Cayman-10013;AC=539;", "Ala->Ser": "NT=Ala->Ser;AC=540;", "Ala->Thr": "NT=Ala->Thr;AC=541;", "Ala->Asp": "NT=Ala->Asp;AC=542;", "Ala->Pro": "NT=Ala->Pro;AC=543;", "Ala->Gly": "NT=Ala->Gly;AC=544;", "Ala->Glu": "NT=Ala->Glu;AC=545;", "Ala->Val": "NT=Ala->Val;AC=546;", "Cys->Phe": "NT=Cys->Phe;AC=547;", "Cys->Ser": "NT=Cys->Ser;AC=548;", "Cys->Trp": "NT=Cys->Trp;AC=549;", "Cys->Tyr": "NT=Cys->Tyr;AC=550;", "Cys->Arg": "NT=Cys->Arg;AC=551;", "Cys->Gly": "NT=Cys->Gly;AC=552;", "Asp->Ala": "NT=Asp->Ala;AC=553;", "Asp->His": "NT=Asp->His;AC=554;", "Asp->Asn": "NT=Asp->Asn;AC=555;", "Asp->Gly": "NT=Asp->Gly;AC=556;", "Asp->Tyr": "NT=Asp->Tyr;AC=557;", "Asp->Glu": "NT=Asp->Glu;AC=558;", "Asp->Val": "NT=Asp->Val;AC=559;", "Glu->Ala": "NT=Glu->Ala;AC=560;", "Glu->Gln": "NT=Glu->Gln;AC=561;", "Glu->Asp": "NT=Glu->Asp;AC=562;", "Glu->Lys": "NT=Glu->Lys;AC=563;", "Glu->Gly": "NT=Glu->Gly;AC=564;", "Glu->Val": "NT=Glu->Val;AC=565;", "Phe->Ser": "NT=Phe->Ser;AC=566;", "Phe->Cys": "NT=Phe->Cys;AC=567;", "Phe->Xle": "NT=Phe->Xle;AC=568;", "Phe->Tyr": "NT=Phe->Tyr;AC=569;", "Phe->Val": "NT=Phe->Val;AC=570;", "Gly->Ala": "NT=Gly->Ala;AC=571;", "Gly->Ser": "NT=Gly->Ser;AC=572;", "Gly->Trp": "NT=Gly->Trp;AC=573;", "Gly->Glu": "NT=Gly->Glu;AC=574;", "Gly->Val": "NT=Gly->Val;AC=575;", "Gly->Asp": "NT=Gly->Asp;AC=576;", "Gly->Cys": "NT=Gly->Cys;AC=577;", "Gly->Arg": "NT=Gly->Arg;AC=578;", "His->Pro": "NT=His->Pro;AC=580;", "His->Tyr": "NT=His->Tyr;AC=581;", "His->Gln": "NT=His->Gln;AC=582;", "His->Arg": "NT=His->Arg;AC=584;", "His->Xle": "NT=His->Xle;AC=585;", "Xle->Thr": "NT=Xle->Thr;AC=588;", "Xle->Asn": "NT=Xle->Asn;AC=589;", "Xle->Lys": "NT=Xle->Lys;AC=590;", "Lys->Thr": "NT=Lys->Thr;AC=594;", "Lys->Asn": "NT=Lys->Asn;AC=595;", "Lys->Glu": "NT=Lys->Glu;AC=596;", "Lys->Gln": "NT=Lys->Gln;AC=597;", "Lys->Met": "NT=Lys->Met;AC=598;", "Lys->Arg": "NT=Lys->Arg;AC=599;", "Lys->Xle": "NT=Lys->Xle;AC=600;", "Xle->Ser": "NT=Xle->Ser;AC=601;", "Xle->Phe": "NT=Xle->Phe;AC=602;", "Xle->Trp": "NT=Xle->Trp;AC=603;", "Xle->Pro": "NT=Xle->Pro;AC=604;", "Xle->Val": "NT=Xle->Val;AC=605;", "Xle->His": "NT=Xle->His;AC=606;", "Xle->Gln": "NT=Xle->Gln;AC=607;", "Xle->Met": "NT=Xle->Met;AC=608;", "Xle->Arg": "NT=Xle->Arg;AC=609;", "Met->Thr": "NT=Met->Thr;AC=610;", "Met->Arg": "NT=Met->Arg;AC=611;", "Met->Lys": "NT=Met->Lys;AC=613;", "Met->Xle": "NT=Met->Xle;AC=614;", "Met->Val": "NT=Met->Val;AC=615;", "Asn->Ser": "NT=Asn->Ser;AC=616;", "Asn->Thr": "NT=Asn->Thr;AC=617;", "Asn->Lys": "NT=Asn->Lys;AC=618;", "Asn->Tyr": "NT=Asn->Tyr;AC=619;", "Asn->His": "NT=Asn->His;AC=620;", "Asn->Asp": "NT=Asn->Asp;AC=621;", "Asn->Xle": "NT=Asn->Xle;AC=622;", "Pro->Ser": "NT=Pro->Ser;AC=623;", "Pro->Ala": "NT=Pro->Ala;AC=624;", "Pro->His": "NT=Pro->His;AC=625;", "Pro->Gln": "NT=Pro->Gln;AC=626;", "Pro->Thr": "NT=Pro->Thr;AC=627;", "Pro->Arg": "NT=Pro->Arg;AC=628;", "Pro->Xle": "NT=Pro->Xle;AC=629;", "Gln->Pro": "NT=Gln->Pro;AC=630;", "Gln->Lys": "NT=Gln->Lys;AC=631;", "Gln->Glu": "NT=Gln->Glu;AC=632;", "Gln->His": "NT=Gln->His;AC=633;", "Gln->Arg": "NT=Gln->Arg;AC=634;", "Gln->Xle": "NT=Gln->Xle;AC=635;", "Arg->Ser": "NT=Arg->Ser;AC=636;", "Arg->Trp": "NT=Arg->Trp;AC=637;", "Arg->Thr": "NT=Arg->Thr;AC=638;", "Arg->Pro": "NT=Arg->Pro;AC=639;", "Arg->Lys": "NT=Arg->Lys;AC=640;", "Arg->His": "NT=Arg->His;AC=641;", "Arg->Gln": "NT=Arg->Gln;AC=642;", "Arg->Met": "NT=Arg->Met;AC=643;", "Arg->Cys": "NT=Arg->Cys;AC=644;", "Arg->Xle": "NT=Arg->Xle;AC=645;", "Arg->Gly": "NT=Arg->Gly;AC=646;", "Ser->Phe": "NT=Ser->Phe;AC=647;", "Ser->Ala": "NT=Ser->Ala;AC=648;", "Ser->Trp": "NT=Ser->Trp;AC=649;", "Ser->Thr": "NT=Ser->Thr;AC=650;", "Ser->Asn": "NT=Ser->Asn;AC=651;", "Ser->Pro": "NT=Ser->Pro;AC=652;", "Ser->Tyr": "NT=Ser->Tyr;AC=653;", "Ser->Cys": "NT=Ser->Cys;AC=654;", "Ser->Arg": "NT=Ser->Arg;AC=655;", "Ser->Xle": "NT=Ser->Xle;AC=656;", "Ser->Gly": "NT=Ser->Gly;AC=657;", "Thr->Ser": "NT=Thr->Ser;AC=658;", "Thr->Ala": "NT=Thr->Ala;AC=659;", "Thr->Asn": "NT=Thr->Asn;AC=660;", "Thr->Lys": "NT=Thr->Lys;AC=661;", "Thr->Pro": "NT=Thr->Pro;AC=662;", "Thr->Met": "NT=Thr->Met;AC=663;", "Thr->Xle": "NT=Thr->Xle;AC=664;", "Thr->Arg": "NT=Thr->Arg;AC=665;", "Val->Phe": "NT=Val->Phe;AC=666;", "Val->Ala": "NT=Val->Ala;AC=667;", "Val->Glu": "NT=Val->Glu;AC=668;", "Val->Met": "NT=Val->Met;AC=669;", "Val->Asp": "NT=Val->Asp;AC=670;", "Val->Xle": "NT=Val->Xle;AC=671;", "Val->Gly": "NT=Val->Gly;AC=672;", "Trp->Ser": "NT=Trp->Ser;AC=673;", "Trp->Cys": "NT=Trp->Cys;AC=674;", "Trp->Arg": "NT=Trp->Arg;AC=675;", "Trp->Gly": "NT=Trp->Gly;AC=676;", "Trp->Xle": "NT=Trp->Xle;AC=677;", "Tyr->Phe": "NT=Tyr->Phe;AC=678;", "Tyr->Ser": "NT=Tyr->Ser;AC=679;", "Tyr->Asn": "NT=Tyr->Asn;AC=680;", "Tyr->His": "NT=Tyr->His;AC=681;", "Tyr->Asp": "NT=Tyr->Asp;AC=682;", "Tyr->Cys": "NT=Tyr->Cys;AC=683;", "BDMAPP": "NT=BDMAPP;AC=684;", "NA-LNO2": "NT=NA-LNO2;AC=685;", "NA-OA-NO2": "NT=NA-OA-NO2;AC=686;", "ICPL:2H(4)": "NT=ICPL:2H(4);AC=687;", "Label:13C(6)15N(1)": "NT=Label:13C(6)15N(1);AC=695;", "Label:2H(9)13C(6)15N(2)": "NT=Label:2H(9)13C(6)15N(2);AC=696;", "NIC": "NT=NIC;AC=697;", "dNIC": "NT=dNIC;AC=698;", "HNE-Delta:H(2)O": "NT=HNE-Delta:H(2)O;AC=720;", "4-ONE": "NT=4-ONE;AC=721;", "O-Dimethylphosphate": "NT=O-Dimethylphosphate;AC=723;", "O-Methylphosphate": "NT=O-Methylphosphate;AC=724;", "Diethylphosphate": "NT=Diethylphosphate;AC=725;", "Ethylphosphate": "NT=Ethylphosphate;AC=726;", "O-pinacolylmethylphosphonate": "NT=O-pinacolylmethylphosphonate;AC=727;", "Methylphosphonate": "NT=Methylphosphonate;AC=728;", "O-Isopropylmethylphosphonate": "NT=O-Isopropylmethylphosphonate;AC=729;", "iTRAQ8plex": "NT=iTRAQ8plex;AC=730;", "iTRAQ8plex:13C(6)15N(2)": "NT=iTRAQ8plex:13C(6)15N(2);AC=731;", "Ethanolamine": "NT=Ethanolamine;AC=734;", "BEMAD_ST": "NT=BEMAD_ST;AC=735;", "BEMAD_C": "NT=BEMAD_C;AC=736;", "TMT6plex": "NT=TMT6plex;AC=737;", "TMT2plex": "NT=TMT2plex;AC=738;", "TMT": "NT=TMT;AC=739;", "ExacTagThiol": "NT=ExacTagThiol;AC=740;", "ExacTagAmine": "NT=ExacTagAmine;AC=741;", "4-ONE+Delta:H(-2)O(-1)": "NT=4-ONE+Delta:H(-2)O(-1);AC=743;", "NO_SMX_SEMD": "NT=NO_SMX_SEMD;AC=744;", "NO_SMX_SIMD": "NT=NO_SMX_SIMD;AC=746;", "Malonyl": "NT=Malonyl;AC=747;", "3sulfo": "NT=3sulfo;AC=748;", "trifluoro": "NT=trifluoro;AC=750;", "TNBS": "NT=TNBS;AC=751;", "IDEnT": "NT=IDEnT;AC=762;", "BEMAD_ST:2H(6)": "NT=BEMAD_ST:2H(6);AC=763;", "BEMAD_C:2H(6)": "NT=BEMAD_C:2H(6);AC=764;", "Met-loss": "NT=Met-loss;AC=765;", "Met-loss+Acetyl": "NT=Met-loss+Acetyl;AC=766;", "Menadione-HQ": "NT=Menadione-HQ;AC=767;", "Methyl+Acetyl:2H(3)": "NT=Methyl+Acetyl:2H(3);AC=768;", "lapachenole": "NT=lapachenole;AC=771;", "Label:13C(5)": "NT=Label:13C(5);AC=772;", "maleimide": "NT=maleimide;AC=773;", "Biotin-phenacyl": "NT=Biotin-phenacyl;AC=774;", "Carboxymethyl:13C(2)": "NT=Carboxymethyl:13C(2);AC=775;", "NEM:2H(5)": "NT=NEM:2H(5);AC=776;", "AEC-MAEC:2H(4)": "NT=AEC-MAEC:2H(4);AC=792;", "Hex(1)HexNAc(1)": "NT=Hex(1)HexNAc(1);AC=793;", "Label:13C(6)+GG": "NT=Label:13C(6)+GG;AC=799;", "Biotin:Thermo-21345": "NT=Biotin:Thermo-21345;AC=800;", "Pentylamine": "NT=Pentylamine;AC=801;", "Biotin:Thermo-21360": "NT=Biotin:Thermo-21360;AC=811;", "Cy3b-maleimide": "NT=Cy3b-maleimide;AC=821;", "Gly-loss+Amide": "NT=Gly-loss+Amide;AC=822;", "Xlink:BMOE": "NT=Xlink:BMOE;AC=824;", "Xlink:DFDNB": "NT=Xlink:DFDNB;AC=825;", "TMPP-Ac": "NT=TMPP-Ac;AC=827;", "Dihydroxyimidazolidine": "NT=Dihydroxyimidazolidine;AC=830;", "Label:2H(4)+Acetyl": "NT=Label:2H(4)+Acetyl;AC=834;", "Label:13C(6)+Acetyl": "NT=Label:13C(6)+Acetyl;AC=835;", "Label:13C(6)15N(2)+Acetyl": "NT=Label:13C(6)15N(2)+Acetyl;AC=836;", "Arg->Npo": "NT=Arg->Npo;AC=837;", "EQIGG": "NT=EQIGG;AC=846;", "Arg2PG": "NT=Arg2PG;AC=848;", "cGMP": "NT=cGMP;AC=849;", "cGMP+RMP-loss": "NT=cGMP+RMP-loss;AC=851;", "Label:2H(4)+GG": "NT=Label:2H(4)+GG;AC=853;", "MG-H1": "NT=MG-H1;AC=859;", "G-H1": "NT=G-H1;AC=860;", "ZGB": "NT=ZGB;AC=861;", "Label:13C(1)2H(3)": "NT=Label:13C(1)2H(3);AC=862;", "Label:13C(6)15N(2)+GG": "NT=Label:13C(6)15N(2)+GG;AC=864;", "ICPL:13C(6)2H(4)": "NT=ICPL:13C(6)2H(4);AC=866;", "QEQTGG": "NT=QEQTGG;AC=876;", "QQQTGG": "NT=QQQTGG;AC=877;", "Biotin:Thermo-21325": "NT=Biotin:Thermo-21325;AC=884;", "Label:13C(1)2H(3)+Oxidation": "NT=Label:13C(1)2H(3)+Oxidation;AC=885;", "HydroxymethylOP": "NT=HydroxymethylOP;AC=886;", "MDCC": "NT=MDCC;AC=887;", "mTRAQ": "NT=mTRAQ;AC=888;", "mTRAQ:13C(3)15N(1)": "NT=mTRAQ:13C(3)15N(1);AC=889;", "DyLight-maleimide": "NT=DyLight-maleimide;AC=890;", "Methyl-PEO12-Maleimide": "NT=Methyl-PEO12-Maleimide;AC=891;", "CarbamidomethylDTT": "NT=CarbamidomethylDTT;AC=893;", "CarboxymethylDTT": "NT=CarboxymethylDTT;AC=894;", "Biotin-PEG-PRA": "NT=Biotin-PEG-PRA;AC=895;", "Met->Aha": "NT=Met->Aha;AC=896;", "Label:15N(4)": "NT=Label:15N(4);AC=897;", "pyrophospho": "NT=pyrophospho;AC=898;", "Met->Hpg": "NT=Met->Hpg;AC=899;", "4AcAllylGal": "NT=4AcAllylGal;AC=901;", "DimethylArsino": "NT=DimethylArsino;AC=902;", "Lys->CamCys": "NT=Lys->CamCys;AC=903;", "Phe->CamCys": "NT=Phe->CamCys;AC=904;", "Leu->MetOx": "NT=Leu->MetOx;AC=905;", "Lys->MetOx": "NT=Lys->MetOx;AC=906;", "Galactosyl": "NT=Galactosyl;AC=907;", "Xlink:SMCC[321]": "NT=Xlink:SMCC[321];AC=908;", "Bacillosamine": "NT=Bacillosamine;AC=910;", "MTSL": "NT=MTSL;AC=911;", "HNE-BAHAH": "NT=HNE-BAHAH;AC=912;", "Methylmalonylation": "NT=Methylmalonylation;AC=914;", "Label:13C(4)15N(2)+GG": "NT=Label:13C(4)15N(2)+GG;AC=923;", "ethylamino": "NT=ethylamino;AC=926;", "MercaptoEthanol": "NT=MercaptoEthanol;AC=928;", "Ethyl+Deamidated": "NT=Ethyl+Deamidated;AC=931;", "VFQQQTGG": "NT=VFQQQTGG;AC=932;", "VIEVYQEQTGG": "NT=VIEVYQEQTGG;AC=933;", "AMTzHexNAc2": "NT=AMTzHexNAc2;AC=934;", "Atto495Maleimide": "NT=Atto495Maleimide;AC=935;", "Chlorination": "NT=Chlorination;AC=936;", "dichlorination": "NT=dichlorination;AC=937;", "AROD": "NT=AROD;AC=938;", "Cys->methylaminoAla": "NT=Cys->methylaminoAla;AC=939;", "Cys->ethylaminoAla": "NT=Cys->ethylaminoAla;AC=940;", "DNPS": "NT=DNPS;AC=941;", "SulfoGMBS": "NT=SulfoGMBS;AC=942;", "DimethylamineGMBS": "NT=DimethylamineGMBS;AC=943;", "Label:15N(2)2H(9)": "NT=Label:15N(2)2H(9);AC=944;", "LG-anhydrolactam": "NT=LG-anhydrolactam;AC=946;", "LG-pyrrole": "NT=LG-pyrrole;AC=947;", "LG-anhyropyrrole": "NT=LG-anhyropyrrole;AC=948;", "3-deoxyglucosone": "NT=3-deoxyglucosone;AC=949;", "Cation:Li": "NT=Cation:Li;AC=950;", "Cation:Ca[II]": "NT=Cation:Ca[II];AC=951;", "Cation:Fe[II]": "NT=Cation:Fe[II];AC=952;", "Cation:Ni[II]": "NT=Cation:Ni[II];AC=953;", "Cation:Zn[II]": "NT=Cation:Zn[II];AC=954;", "Cation:Ag": "NT=Cation:Ag;AC=955;", "Cation:Mg[II]": "NT=Cation:Mg[II];AC=956;", "2-succinyl": "NT=2-succinyl;AC=957;", "Propargylamine": "NT=Propargylamine;AC=958;", "Phosphopropargyl": "NT=Phosphopropargyl;AC=959;", "SUMO2135": "NT=SUMO2135;AC=960;", "SUMO3549": "NT=SUMO3549;AC=961;", "thioacylPA": "NT=thioacylPA;AC=967;", "maleimide3": "NT=maleimide3;AC=971;", "maleimide5": "NT=maleimide5;AC=972;", "Puromycin": "NT=Puromycin;AC=973;", "Carbofuran": "NT=Carbofuran;AC=977;", "BITC": "NT=BITC;AC=978;", "PEITC": "NT=PEITC;AC=979;", "glucosone": "NT=glucosone;AC=981;", "cysTMT": "NT=cysTMT;AC=984;", "cysTMT6plex": "NT=cysTMT6plex;AC=985;", "Label:13C(6)+Dimethyl": "NT=Label:13C(6)+Dimethyl;AC=986;", "Label:13C(6)15N(2)+Dimethyl": "NT=Label:13C(6)15N(2)+Dimethyl;AC=987;", "Ammonium": "NT=Ammonium;AC=989;", "ISD_z+2_ion": "NT=ISD_z+2_ion;AC=991;", "Biotin:Sigma-B1267": "NT=Biotin:Sigma-B1267;AC=993;", "Label:15N(1)": "NT=Label:15N(1);AC=994;", "Label:15N(2)": "NT=Label:15N(2);AC=995;", "Label:15N(3)": "NT=Label:15N(3);AC=996;", "sulfo+amino": "NT=sulfo+amino;AC=997;", "AHA-Alkyne": "NT=AHA-Alkyne;AC=1000;", "AHA-Alkyne-KDDDD": "NT=AHA-Alkyne-KDDDD;AC=1001;", "EGCG1": "NT=EGCG1;AC=1002;", "EGCG2": "NT=EGCG2;AC=1003;", "Label:13C(6)15N(4)+Methyl": "NT=Label:13C(6)15N(4)+Methyl;AC=1004;", "Label:13C(6)15N(4)+Dimethyl": "NT=Label:13C(6)15N(4)+Dimethyl;AC=1005;", "Label:13C(6)15N(4)+Methyl:2H(3)13C(1)": "NT=Label:13C(6)15N(4)+Methyl:2H(3)13C(1);AC=1006;", "Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2)": "NT=Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2);AC=1007;", "Cys->CamSec": "NT=Cys->CamSec;AC=1008;", "Thiazolidine": "NT=Thiazolidine;AC=1009;", "DEDGFLYMVYASQETFG": "NT=DEDGFLYMVYASQETFG;AC=1010;", "Biotin:Invitrogen-M1602": "NT=Biotin:Invitrogen-M1602;AC=1012;", "glycidamide": "NT=glycidamide;AC=1014;", "Ahx2+Hsl": "NT=Ahx2+Hsl;AC=1015;", "DMPO": "NT=DMPO;AC=1017;", "ICDID": "NT=ICDID;AC=1018;", "ICDID:2H(6)": "NT=ICDID:2H(6);AC=1019;", "Xlink:DSS[156]": "NT=Xlink:DSS[156];AC=1020;", "Xlink:EGS[244]": "NT=Xlink:EGS[244];AC=1021;", "Xlink:DST[132]": "NT=Xlink:DST[132];AC=1022;", "Xlink:DTSSP[192]": "NT=Xlink:DTSSP[192];AC=1023;", "Xlink:SMCC[237]": "NT=Xlink:SMCC[237];AC=1024;", "Xlink:DMP[140]": "NT=Xlink:DMP[140];AC=1027;", "Xlink:EGS[115]": "NT=Xlink:EGS[115];AC=1028;", "Biotin:Thermo-88310": "NT=Biotin:Thermo-88310;AC=1031;", "2-nitrobenzyl": "NT=2-nitrobenzyl;AC=1032;", "Cys->SecNEM": "NT=Cys->SecNEM;AC=1033;", "Cys->SecNEM:2H(5)": "NT=Cys->SecNEM:2H(5);AC=1034;", "Thiadiazole": "NT=Thiadiazole;AC=1035;", "Withaferin": "NT=Withaferin;AC=1036;", "Biotin:Thermo-88317": "NT=Biotin:Thermo-88317;AC=1037;", "TAMRA-FP": "NT=TAMRA-FP;AC=1038;", "Biotin:Thermo-21901+H2O": "NT=Biotin:Thermo-21901+H2O;AC=1039;", "Deoxyhypusine": "NT=Deoxyhypusine;AC=1041;", "Acetyldeoxyhypusine": "NT=Acetyldeoxyhypusine;AC=1042;", "Acetylhypusine": "NT=Acetylhypusine;AC=1043;", "Ala->Cys": "NT=Ala->Cys;AC=1044;", "Ala->Phe": "NT=Ala->Phe;AC=1045;", "Ala->His": "NT=Ala->His;AC=1046;", "Ala->Xle": "NT=Ala->Xle;AC=1047;", "Ala->Lys": "NT=Ala->Lys;AC=1048;", "Ala->Met": "NT=Ala->Met;AC=1049;", "Ala->Asn": "NT=Ala->Asn;AC=1050;", "Ala->Gln": "NT=Ala->Gln;AC=1051;", "Ala->Arg": "NT=Ala->Arg;AC=1052;", "Ala->Trp": "NT=Ala->Trp;AC=1053;", "Ala->Tyr": "NT=Ala->Tyr;AC=1054;", "Cys->Ala": "NT=Cys->Ala;AC=1055;", "Cys->Asp": "NT=Cys->Asp;AC=1056;", "Cys->Glu": "NT=Cys->Glu;AC=1057;", "Cys->His": "NT=Cys->His;AC=1058;", "Cys->Xle": "NT=Cys->Xle;AC=1059;", "Cys->Lys": "NT=Cys->Lys;AC=1060;", "Cys->Met": "NT=Cys->Met;AC=1061;", "Cys->Asn": "NT=Cys->Asn;AC=1062;", "Cys->Pro": "NT=Cys->Pro;AC=1063;", "Cys->Gln": "NT=Cys->Gln;AC=1064;", "Cys->Thr": "NT=Cys->Thr;AC=1065;", "Cys->Val": "NT=Cys->Val;AC=1066;", "Asp->Cys": "NT=Asp->Cys;AC=1067;", "Asp->Phe": "NT=Asp->Phe;AC=1068;", "Asp->Xle": "NT=Asp->Xle;AC=1069;", "Asp->Lys": "NT=Asp->Lys;AC=1070;", "Asp->Met": "NT=Asp->Met;AC=1071;", "Asp->Pro": "NT=Asp->Pro;AC=1072;", "Asp->Gln": "NT=Asp->Gln;AC=1073;", "Asp->Arg": "NT=Asp->Arg;AC=1074;", "Asp->Ser": "NT=Asp->Ser;AC=1075;", "Asp->Thr": "NT=Asp->Thr;AC=1076;", "Asp->Trp": "NT=Asp->Trp;AC=1077;", "Glu->Cys": "NT=Glu->Cys;AC=1078;", "Glu->Phe": "NT=Glu->Phe;AC=1079;", "Glu->His": "NT=Glu->His;AC=1080;", "Glu->Xle": "NT=Glu->Xle;AC=1081;", "Glu->Met": "NT=Glu->Met;AC=1082;", "Glu->Asn": "NT=Glu->Asn;AC=1083;", "Glu->Pro": "NT=Glu->Pro;AC=1084;", "Glu->Arg": "NT=Glu->Arg;AC=1085;", "Glu->Ser": "NT=Glu->Ser;AC=1086;", "Glu->Thr": "NT=Glu->Thr;AC=1087;", "Glu->Trp": "NT=Glu->Trp;AC=1088;", "Glu->Tyr": "NT=Glu->Tyr;AC=1089;", "Phe->Ala": "NT=Phe->Ala;AC=1090;", "Phe->Asp": "NT=Phe->Asp;AC=1091;", "Phe->Glu": "NT=Phe->Glu;AC=1092;", "Phe->Gly": "NT=Phe->Gly;AC=1093;", "Phe->His": "NT=Phe->His;AC=1094;", "Phe->Lys": "NT=Phe->Lys;AC=1095;", "Phe->Met": "NT=Phe->Met;AC=1096;", "Phe->Asn": "NT=Phe->Asn;AC=1097;", "Phe->Pro": "NT=Phe->Pro;AC=1098;", "Phe->Gln": "NT=Phe->Gln;AC=1099;", "Phe->Arg": "NT=Phe->Arg;AC=1100;", "Phe->Thr": "NT=Phe->Thr;AC=1101;", "Phe->Trp": "NT=Phe->Trp;AC=1102;", "Gly->Phe": "NT=Gly->Phe;AC=1103;", "Gly->His": "NT=Gly->His;AC=1104;", "Gly->Xle": "NT=Gly->Xle;AC=1105;", "Gly->Lys": "NT=Gly->Lys;AC=1106;", "Gly->Met": "NT=Gly->Met;AC=1107;", "Gly->Asn": "NT=Gly->Asn;AC=1108;", "Gly->Pro": "NT=Gly->Pro;AC=1109;", "Gly->Gln": "NT=Gly->Gln;AC=1110;", "Gly->Thr": "NT=Gly->Thr;AC=1111;", "Gly->Tyr": "NT=Gly->Tyr;AC=1112;", "His->Ala": "NT=His->Ala;AC=1113;", "His->Cys": "NT=His->Cys;AC=1114;", "His->Glu": "NT=His->Glu;AC=1115;", "His->Phe": "NT=His->Phe;AC=1116;", "His->Gly": "NT=His->Gly;AC=1117;", "His->Lys": "NT=His->Lys;AC=1119;", "His->Met": "NT=His->Met;AC=1120;", "His->Ser": "NT=His->Ser;AC=1121;", "His->Thr": "NT=His->Thr;AC=1122;", "His->Val": "NT=His->Val;AC=1123;", "His->Trp": "NT=His->Trp;AC=1124;", "Xle->Ala": "NT=Xle->Ala;AC=1125;", "Xle->Cys": "NT=Xle->Cys;AC=1126;", "Xle->Asp": "NT=Xle->Asp;AC=1127;", "Xle->Glu": "NT=Xle->Glu;AC=1128;", "Xle->Gly": "NT=Xle->Gly;AC=1129;", "Xle->Tyr": "NT=Xle->Tyr;AC=1130;", "Lys->Ala": "NT=Lys->Ala;AC=1131;", "Lys->Cys": "NT=Lys->Cys;AC=1132;", "Lys->Asp": "NT=Lys->Asp;AC=1133;", "Lys->Phe": "NT=Lys->Phe;AC=1134;", "Lys->Gly": "NT=Lys->Gly;AC=1135;", "Lys->His": "NT=Lys->His;AC=1136;", "Lys->Pro": "NT=Lys->Pro;AC=1137;", "Lys->Ser": "NT=Lys->Ser;AC=1138;", "Lys->Val": "NT=Lys->Val;AC=1139;", "Lys->Trp": "NT=Lys->Trp;AC=1140;", "Lys->Tyr": "NT=Lys->Tyr;AC=1141;", "Met->Ala": "NT=Met->Ala;AC=1142;", "Met->Cys": "NT=Met->Cys;AC=1143;", "Met->Asp": "NT=Met->Asp;AC=1144;", "Met->Glu": "NT=Met->Glu;AC=1145;", "Met->Phe": "NT=Met->Phe;AC=1146;", "Met->Gly": "NT=Met->Gly;AC=1147;", "Met->His": "NT=Met->His;AC=1148;", "Met->Asn": "NT=Met->Asn;AC=1149;", "Met->Pro": "NT=Met->Pro;AC=1150;", "Met->Gln": "NT=Met->Gln;AC=1151;", "Met->Ser": "NT=Met->Ser;AC=1152;", "Met->Trp": "NT=Met->Trp;AC=1153;", "Met->Tyr": "NT=Met->Tyr;AC=1154;", "Asn->Ala": "NT=Asn->Ala;AC=1155;", "Asn->Cys": "NT=Asn->Cys;AC=1156;", "Asn->Glu": "NT=Asn->Glu;AC=1157;", "Asn->Phe": "NT=Asn->Phe;AC=1158;", "Asn->Gly": "NT=Asn->Gly;AC=1159;", "Asn->Met": "NT=Asn->Met;AC=1160;", "Asn->Pro": "NT=Asn->Pro;AC=1161;", "Asn->Gln": "NT=Asn->Gln;AC=1162;", "Asn->Arg": "NT=Asn->Arg;AC=1163;", "Asn->Val": "NT=Asn->Val;AC=1164;", "Asn->Trp": "NT=Asn->Trp;AC=1165;", "Pro->Cys": "NT=Pro->Cys;AC=1166;", "Pro->Asp": "NT=Pro->Asp;AC=1167;", "Pro->Glu": "NT=Pro->Glu;AC=1168;", "Pro->Phe": "NT=Pro->Phe;AC=1169;", "Pro->Gly": "NT=Pro->Gly;AC=1170;", "Pro->Lys": "NT=Pro->Lys;AC=1171;", "Pro->Met": "NT=Pro->Met;AC=1172;", "Pro->Asn": "NT=Pro->Asn;AC=1173;", "Pro->Val": "NT=Pro->Val;AC=1174;", "Pro->Trp": "NT=Pro->Trp;AC=1175;", "Pro->Tyr": "NT=Pro->Tyr;AC=1176;", "Gln->Ala": "NT=Gln->Ala;AC=1177;", "Gln->Cys": "NT=Gln->Cys;AC=1178;", "Gln->Asp": "NT=Gln->Asp;AC=1179;", "Gln->Phe": "NT=Gln->Phe;AC=1180;", "Gln->Gly": "NT=Gln->Gly;AC=1181;", "Gln->Met": "NT=Gln->Met;AC=1182;", "Gln->Asn": "NT=Gln->Asn;AC=1183;", "Gln->Ser": "NT=Gln->Ser;AC=1184;", "Gln->Thr": "NT=Gln->Thr;AC=1185;", "Gln->Val": "NT=Gln->Val;AC=1186;", "Gln->Trp": "NT=Gln->Trp;AC=1187;", "Gln->Tyr": "NT=Gln->Tyr;AC=1188;", "Arg->Ala": "NT=Arg->Ala;AC=1189;", "Arg->Asp": "NT=Arg->Asp;AC=1190;", "Arg->Glu": "NT=Arg->Glu;AC=1191;", "Arg->Asn": "NT=Arg->Asn;AC=1192;", "Arg->Val": "NT=Arg->Val;AC=1193;", "Arg->Tyr": "NT=Arg->Tyr;AC=1194;", "Arg->Phe": "NT=Arg->Phe;AC=1195;", "Ser->Asp": "NT=Ser->Asp;AC=1196;", "Ser->Glu": "NT=Ser->Glu;AC=1197;", "Ser->His": "NT=Ser->His;AC=1198;", "Ser->Lys": "NT=Ser->Lys;AC=1199;", "Ser->Met": "NT=Ser->Met;AC=1200;", "Ser->Gln": "NT=Ser->Gln;AC=1201;", "Ser->Val": "NT=Ser->Val;AC=1202;", "Thr->Cys": "NT=Thr->Cys;AC=1203;", "Thr->Asp": "NT=Thr->Asp;AC=1204;", "Thr->Glu": "NT=Thr->Glu;AC=1205;", "Thr->Phe": "NT=Thr->Phe;AC=1206;", "Thr->Gly": "NT=Thr->Gly;AC=1207;", "Thr->His": "NT=Thr->His;AC=1208;", "Thr->Gln": "NT=Thr->Gln;AC=1209;", "Thr->Val": "NT=Thr->Val;AC=1210;", "Thr->Trp": "NT=Thr->Trp;AC=1211;", "Thr->Tyr": "NT=Thr->Tyr;AC=1212;", "Val->Cys": "NT=Val->Cys;AC=1213;", "Val->His": "NT=Val->His;AC=1214;", "Val->Lys": "NT=Val->Lys;AC=1215;", "Val->Asn": "NT=Val->Asn;AC=1216;", "Val->Pro": "NT=Val->Pro;AC=1217;", "Val->Gln": "NT=Val->Gln;AC=1218;", "Val->Arg": "NT=Val->Arg;AC=1219;", "Val->Ser": "NT=Val->Ser;AC=1220;", "Val->Thr": "NT=Val->Thr;AC=1221;", "Val->Trp": "NT=Val->Trp;AC=1222;", "Val->Tyr": "NT=Val->Tyr;AC=1223;", "Trp->Ala": "NT=Trp->Ala;AC=1224;", "Trp->Asp": "NT=Trp->Asp;AC=1225;", "Trp->Glu": "NT=Trp->Glu;AC=1226;", "Trp->Phe": "NT=Trp->Phe;AC=1227;", "Trp->His": "NT=Trp->His;AC=1228;", "Trp->Lys": "NT=Trp->Lys;AC=1229;", "Trp->Met": "NT=Trp->Met;AC=1230;", "Trp->Asn": "NT=Trp->Asn;AC=1231;", "Trp->Pro": "NT=Trp->Pro;AC=1232;", "Trp->Gln": "NT=Trp->Gln;AC=1233;", "Trp->Thr": "NT=Trp->Thr;AC=1234;", "Trp->Val": "NT=Trp->Val;AC=1235;", "Trp->Tyr": "NT=Trp->Tyr;AC=1236;", "Tyr->Ala": "NT=Tyr->Ala;AC=1237;", "Tyr->Glu": "NT=Tyr->Glu;AC=1238;", "Tyr->Gly": "NT=Tyr->Gly;AC=1239;", "Tyr->Lys": "NT=Tyr->Lys;AC=1240;", "Tyr->Met": "NT=Tyr->Met;AC=1241;", "Tyr->Pro": "NT=Tyr->Pro;AC=1242;", "Tyr->Gln": "NT=Tyr->Gln;AC=1243;", "Tyr->Arg": "NT=Tyr->Arg;AC=1244;", "Tyr->Thr": "NT=Tyr->Thr;AC=1245;", "Tyr->Val": "NT=Tyr->Val;AC=1246;", "Tyr->Trp": "NT=Tyr->Trp;AC=1247;", "Tyr->Xle": "NT=Tyr->Xle;AC=1248;", "AHA-SS": "NT=AHA-SS;AC=1249;", "AHA-SS_CAM": "NT=AHA-SS_CAM;AC=1250;", "Biotin:Thermo-33033": "NT=Biotin:Thermo-33033;AC=1251;", "Biotin:Thermo-33033-H": "NT=Biotin:Thermo-33033-H;AC=1252;", "2-monomethylsuccinyl": "NT=2-monomethylsuccinyl;AC=1253;", "Saligenin": "NT=Saligenin;AC=1254;", "Cresylphosphate": "NT=Cresylphosphate;AC=1255;", "CresylSaligeninPhosphate": "NT=CresylSaligeninPhosphate;AC=1256;", "Ub-Br2": "NT=Ub-Br2;AC=1257;", "Ub-VME": "NT=Ub-VME;AC=1258;", "Ub-fluorescein": "NT=Ub-fluorescein;AC=1261;", "2-dimethylsuccinyl": "NT=2-dimethylsuccinyl;AC=1262;", "Gly": "NT=Gly;AC=1263;", "pupylation": "NT=pupylation;AC=1264;", "Label:13C(4)": "NT=Label:13C(4);AC=1266;", "Label:13C(4)+Oxidation": "NT=Label:13C(4)+Oxidation;AC=1267;", "HCysThiolactone": "NT=HCysThiolactone;AC=1270;", "HCysteinyl": "NT=HCysteinyl;AC=1271;", "UgiJoullie": "NT=UgiJoullie;AC=1276;", "Dipyridyl": "NT=Dipyridyl;AC=1277;", "Furan": "NT=Furan;AC=1278;", "Difuran": "NT=Difuran;AC=1279;", "BMP-piperidinol": "NT=BMP-piperidinol;AC=1281;", "UgiJoullieProGly": "NT=UgiJoullieProGly;AC=1282;", "UgiJoullieProGlyProGly": "NT=UgiJoullieProGlyProGly;AC=1283;", "IMEHex(2)NeuAc(1)": "NT=IMEHex(2)NeuAc(1);AC=1286;", "Arg-loss": "NT=Arg-loss;AC=1287;", "Arg": "NT=Arg;AC=1288;", "Butyryl": "NT=Butyryl;AC=1289;", "Dicarbamidomethyl": "NT=Dicarbamidomethyl;AC=1290;", "Dimethyl:2H(6)": "NT=Dimethyl:2H(6);AC=1291;", "GGQ": "NT=GGQ;AC=1292;", "QTGG": "NT=QTGG;AC=1293;", "Label:13C(3)": "NT=Label:13C(3);AC=1296;", "Label:13C(3)15N(1)": "NT=Label:13C(3)15N(1);AC=1297;", "Label:13C(4)15N(1)": "NT=Label:13C(4)15N(1);AC=1298;", "Label:2H(10)": "NT=Label:2H(10);AC=1299;", "Label:2H(4)13C(1)": "NT=Label:2H(4)13C(1);AC=1300;", "Lys": "NT=Lys;AC=1301;", "mTRAQ:13C(6)15N(2)": "NT=mTRAQ:13C(6)15N(2);AC=1302;", "NeuAc": "NT=NeuAc;AC=1303;", "NeuGc": "NT=NeuGc;AC=1304;", "Propyl": "NT=Propyl;AC=1305;", "Propyl:2H(6)": "NT=Propyl:2H(6);AC=1306;", "Propiophenone": "NT=Propiophenone;AC=1310;", "Delta:H(6)C(3)O(1)": "NT=Delta:H(6)C(3)O(1);AC=1312;", "Delta:H(8)C(6)O(1)": "NT=Delta:H(8)C(6)O(1);AC=1313;", "biotinAcrolein298": "NT=biotinAcrolein298;AC=1314;", "MM-diphenylpentanone": "NT=MM-diphenylpentanone;AC=1315;", "EHD-diphenylpentanone": "NT=EHD-diphenylpentanone;AC=1317;", "Biotin:Thermo-21901+2H2O": "NT=Biotin:Thermo-21901+2H2O;AC=1320;", "DiLeu4plex115": "NT=DiLeu4plex115;AC=1321;", "DiLeu4plex": "NT=DiLeu4plex;AC=1322;", "DiLeu4plex117": "NT=DiLeu4plex117;AC=1323;", "DiLeu4plex118": "NT=DiLeu4plex118;AC=1324;", "NEMsulfur": "NT=NEMsulfur;AC=1326;", "SulfurDioxide": "NT=SulfurDioxide;AC=1327;", "NEMsulfurWater": "NT=NEMsulfurWater;AC=1328;", "bisANS-sulfonates": "NT=bisANS-sulfonates;AC=1330;", "DNCB_hapten": "NT=DNCB_hapten;AC=1331;", "Biotin:Thermo-21911": "NT=Biotin:Thermo-21911;AC=1340;", "iodoTMT": "NT=iodoTMT;AC=1341;", "iodoTMT6plex": "NT=iodoTMT6plex;AC=1342;", "Phosphogluconoylation": "NT=Phosphogluconoylation;AC=1344;", "PS_Hapten": "NT=PS_Hapten;AC=1345;", "Cy3-maleimide": "NT=Cy3-maleimide;AC=1348;", "benzylguanidine": "NT=benzylguanidine;AC=1349;", "CarboxymethylDMAP": "NT=CarboxymethylDMAP;AC=1350;", "azole": "NT=azole;AC=1355;", "phosphoRibosyl": "NT=phosphoRibosyl;AC=1356;", "NEM:2H(5)+H2O": "NT=NEM:2H(5)+H2O;AC=1358;", "Crotonyl": "NT=Crotonyl;AC=1363;", "O-Et-N-diMePhospho": "NT=O-Et-N-diMePhospho;AC=1364;", "N-dimethylphosphate": "NT=N-dimethylphosphate;AC=1365;", "dHex(1)Hex(1)": "NT=dHex(1)Hex(1);AC=1367;", "Methyl:2H(3)+Acetyl:2H(3)": "NT=Methyl:2H(3)+Acetyl:2H(3);AC=1368;", "Label:2H(3)+Oxidation": "NT=Label:2H(3)+Oxidation;AC=1370;", "Trimethyl:2H(9)": "NT=Trimethyl:2H(9);AC=1371;", "Acetyl:13C(2)": "NT=Acetyl:13C(2);AC=1372;", "dHex(1)Hex(2)": "NT=dHex(1)Hex(2);AC=1375;", "dHex(1)Hex(3)": "NT=dHex(1)Hex(3);AC=1376;", "dHex(1)Hex(4)": "NT=dHex(1)Hex(4);AC=1377;", "dHex(1)Hex(5)": "NT=dHex(1)Hex(5);AC=1378;", "dHex(1)Hex(6)": "NT=dHex(1)Hex(6);AC=1379;", "methylsulfonylethyl": "NT=methylsulfonylethyl;AC=1380;", "ethylsulfonylethyl": "NT=ethylsulfonylethyl;AC=1381;", "phenylsulfonylethyl": "NT=phenylsulfonylethyl;AC=1382;", "PyridoxalPhosphateH2": "NT=PyridoxalPhosphateH2;AC=1383;", "Homocysteic_acid": "NT=Homocysteic_acid;AC=1384;", "Hydroxamic_acid": "NT=Hydroxamic_acid;AC=1385;", "3-phosphoglyceryl": "NT=3-phosphoglyceryl;AC=1387;", "HN2_mustard": "NT=HN2_mustard;AC=1388;", "HN3_mustard": "NT=HN3_mustard;AC=1389;", "Oxidation+NEM": "NT=Oxidation+NEM;AC=1390;", "NHS-fluorescein": "NT=NHS-fluorescein;AC=1391;", "DiART6plex": "NT=DiART6plex;AC=1392;", "DiART6plex115": "NT=DiART6plex115;AC=1393;", "DiART6plex116/119": "NT=DiART6plex116/119;AC=1394;", "DiART6plex117": "NT=DiART6plex117;AC=1395;", "DiART6plex118": "NT=DiART6plex118;AC=1396;", "Iodoacetanilide": "NT=Iodoacetanilide;AC=1397;", "Iodoacetanilide:13C(6)": "NT=Iodoacetanilide:13C(6);AC=1398;", "Dap-DSP": "NT=Dap-DSP;AC=1399;", "MurNAc": "NT=MurNAc;AC=1400;", "Label:2H(7)15N(4)": "NT=Label:2H(7)15N(4);AC=1402;", "Label:2H(6)15N(1)": "NT=Label:2H(6)15N(1);AC=1403;", "EEEDVIEVYQEQTGG": "NT=EEEDVIEVYQEQTGG;AC=1405;", "EDEDTIDVFQQQTGG": "NT=EDEDTIDVFQQQTGG;AC=1406;", "Hex(5)HexNAc(4)NeuAc(2)": "NT=Hex(5)HexNAc(4)NeuAc(2);AC=1408;", "Hex(5)HexNAc(4)NeuAc(1)": "NT=Hex(5)HexNAc(4)NeuAc(1);AC=1409;", "dHex(1)Hex(5)HexNAc(4)NeuAc(1)": "NT=dHex(1)Hex(5)HexNAc(4)NeuAc(1);AC=1410;", "dHex(1)Hex(5)HexNAc(4)NeuAc(2)": "NT=dHex(1)Hex(5)HexNAc(4)NeuAc(2);AC=1411;", "s-GlcNAc": "NT=s-GlcNAc;AC=1412;", "PhosphoHex(2)": "NT=PhosphoHex(2);AC=1413;", "Trimethyl:13C(3)2H(9)": "NT=Trimethyl:13C(3)2H(9);AC=1414;", "15N-oxobutanoic": "NT=15N-oxobutanoic;AC=1419;", "spermine": "NT=spermine;AC=1420;", "spermidine": "NT=spermidine;AC=1421;", "Biotin:Thermo-21330": "NT=Biotin:Thermo-21330;AC=1423;", "Pentose": "NT=Pentose;AC=1425;", "Hex(1)Pent(1)": "NT=Hex(1)Pent(1);AC=1426;", "Hex(1)HexA(1)": "NT=Hex(1)HexA(1);AC=1427;", "Hex(1)Pent(2)": "NT=Hex(1)Pent(2);AC=1428;", "Hex(1)HexNAc(1)Phos(1)": "NT=Hex(1)HexNAc(1)Phos(1);AC=1429;", "Hex(1)HexNAc(1)Sulf(1)": "NT=Hex(1)HexNAc(1)Sulf(1);AC=1430;", "Hex(1)NeuAc(1)": "NT=Hex(1)NeuAc(1);AC=1431;", "Hex(1)NeuGc(1)": "NT=Hex(1)NeuGc(1);AC=1432;", "HexNAc(3)": "NT=HexNAc(3);AC=1433;", "HexNAc(1)NeuAc(1)": "NT=HexNAc(1)NeuAc(1);AC=1434;", "HexNAc(1)NeuGc(1)": "NT=HexNAc(1)NeuGc(1);AC=1435;", "Hex(1)HexNAc(1)dHex(1)Me(1)": "NT=Hex(1)HexNAc(1)dHex(1)Me(1);AC=1436;", "Hex(1)HexNAc(1)dHex(1)Me(2)": "NT=Hex(1)HexNAc(1)dHex(1)Me(2);AC=1437;", "Hex(2)HexNAc(1)": "NT=Hex(2)HexNAc(1);AC=1438;", "Hex(1)HexA(1)HexNAc(1)": "NT=Hex(1)HexA(1)HexNAc(1);AC=1439;", "Hex(2)HexNAc(1)Me(1)": "NT=Hex(2)HexNAc(1)Me(1);AC=1440;", "Hex(1)Pent(3)": "NT=Hex(1)Pent(3);AC=1441;", "Hex(1)NeuAc(1)Pent(1)": "NT=Hex(1)NeuAc(1)Pent(1);AC=1442;", "Hex(2)HexNAc(1)Sulf(1)": "NT=Hex(2)HexNAc(1)Sulf(1);AC=1443;", "Hex(2)NeuAc(1)": "NT=Hex(2)NeuAc(1);AC=1444;", "dHex(2)Hex(2)": "NT=dHex(2)Hex(2);AC=1445;", "dHex(1)Hex(2)HexA(1)": "NT=dHex(1)Hex(2)HexA(1);AC=1446;", "Hex(1)HexNAc(2)Sulf(1)": "NT=Hex(1)HexNAc(2)Sulf(1);AC=1447;", "Hex(4)": "NT=Hex(4);AC=1448;", "dHex(1)Hex(2)HexNAc(2)Pent(1)": "NT=dHex(1)Hex(2)HexNAc(2)Pent(1);AC=1449;", "Hex(2)HexNAc(2)NeuAc(1)": "NT=Hex(2)HexNAc(2)NeuAc(1);AC=1450;", "Hex(3)HexNAc(2)Pent(1)": "NT=Hex(3)HexNAc(2)Pent(1);AC=1451;", "Hex(4)HexNAc(2)": "NT=Hex(4)HexNAc(2);AC=1452;", "dHex(1)Hex(4)HexNAc(1)Pent(1)": "NT=dHex(1)Hex(4)HexNAc(1)Pent(1);AC=1453;", "dHex(1)Hex(3)HexNAc(2)Pent(1)": "NT=dHex(1)Hex(3)HexNAc(2)Pent(1);AC=1454;", "Hex(3)HexNAc(2)NeuAc(1)": "NT=Hex(3)HexNAc(2)NeuAc(1);AC=1455;", "Hex(4)HexNAc(2)Pent(1)": "NT=Hex(4)HexNAc(2)Pent(1);AC=1456;", "Hex(3)HexNAc(3)Pent(1)": "NT=Hex(3)HexNAc(3)Pent(1);AC=1457;", "Hex(5)HexNAc(2)Phos(1)": "NT=Hex(5)HexNAc(2)Phos(1);AC=1458;", "dHex(1)Hex(4)HexNAc(2)Pent(1)": "NT=dHex(1)Hex(4)HexNAc(2)Pent(1);AC=1459;", "Hex(7)HexNAc(1)": "NT=Hex(7)HexNAc(1);AC=1460;", "Hex(4)HexNAc(2)NeuAc(1)": "NT=Hex(4)HexNAc(2)NeuAc(1);AC=1461;", "dHex(1)Hex(5)HexNAc(2)": "NT=dHex(1)Hex(5)HexNAc(2);AC=1462;", "dHex(1)Hex(3)HexNAc(3)Pent(1)": "NT=dHex(1)Hex(3)HexNAc(3)Pent(1);AC=1463;", "Hex(3)HexNAc(4)Sulf(1)": "NT=Hex(3)HexNAc(4)Sulf(1);AC=1464;", "Hex(6)HexNAc(2)": "NT=Hex(6)HexNAc(2);AC=1465;", "Hex(4)HexNAc(3)Pent(1)": "NT=Hex(4)HexNAc(3)Pent(1);AC=1466;", "dHex(1)Hex(4)HexNAc(3)": "NT=dHex(1)Hex(4)HexNAc(3);AC=1467;", "Hex(5)HexNAc(3)": "NT=Hex(5)HexNAc(3);AC=1468;", "Hex(3)HexNAc(4)Pent(1)": "NT=Hex(3)HexNAc(4)Pent(1);AC=1469;", "Hex(6)HexNAc(2)Phos(1)": "NT=Hex(6)HexNAc(2)Phos(1);AC=1470;", "dHex(1)Hex(4)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(3)Sulf(1);AC=1471;", "dHex(1)Hex(5)HexNAc(2)Pent(1)": "NT=dHex(1)Hex(5)HexNAc(2)Pent(1);AC=1472;", "Hex(8)HexNAc(1)": "NT=Hex(8)HexNAc(1);AC=1473;", "dHex(1)Hex(3)HexNAc(3)Pent(2)": "NT=dHex(1)Hex(3)HexNAc(3)Pent(2);AC=1474;", "dHex(2)Hex(3)HexNAc(3)Pent(1)": "NT=dHex(2)Hex(3)HexNAc(3)Pent(1);AC=1475;", "dHex(1)Hex(3)HexNAc(4)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(4)Sulf(1);AC=1476;", "dHex(1)Hex(6)HexNAc(2)": "NT=dHex(1)Hex(6)HexNAc(2);AC=1477;", "dHex(1)Hex(4)HexNAc(3)Pent(1)": "NT=dHex(1)Hex(4)HexNAc(3)Pent(1);AC=1478;", "Hex(4)HexNAc(4)Sulf(1)": "NT=Hex(4)HexNAc(4)Sulf(1);AC=1479;", "Hex(7)HexNAc(2)": "NT=Hex(7)HexNAc(2);AC=1480;", "dHex(2)Hex(4)HexNAc(3)": "NT=dHex(2)Hex(4)HexNAc(3);AC=1481;", "Hex(5)HexNAc(3)Pent(1)": "NT=Hex(5)HexNAc(3)Pent(1);AC=1482;", "Hex(4)HexNAc(3)NeuGc(1)": "NT=Hex(4)HexNAc(3)NeuGc(1);AC=1483;", "dHex(1)Hex(5)HexNAc(3)": "NT=dHex(1)Hex(5)HexNAc(3);AC=1484;", "dHex(1)Hex(3)HexNAc(4)Pent(1)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(1);AC=1485;", "Hex(3)HexNAc(5)Sulf(1)": "NT=Hex(3)HexNAc(5)Sulf(1);AC=1486;", "Hex(6)HexNAc(3)": "NT=Hex(6)HexNAc(3);AC=1487;", "Hex(3)HexNAc(4)NeuAc(1)": "NT=Hex(3)HexNAc(4)NeuAc(1);AC=1488;", "Hex(4)HexNAc(4)Pent(1)": "NT=Hex(4)HexNAc(4)Pent(1);AC=1489;", "Hex(7)HexNAc(2)Phos(1)": "NT=Hex(7)HexNAc(2)Phos(1);AC=1490;", "Hex(4)HexNAc(4)Me(2)Pent(1)": "NT=Hex(4)HexNAc(4)Me(2)Pent(1);AC=1491;", "dHex(1)Hex(3)HexNAc(3)Pent(3)": "NT=dHex(1)Hex(3)HexNAc(3)Pent(3);AC=1492;", "dHex(1)Hex(5)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(5)HexNAc(3)Sulf(1);AC=1493;", "dHex(2)Hex(3)HexNAc(3)Pent(2)": "NT=dHex(2)Hex(3)HexNAc(3)Pent(2);AC=1494;", "Hex(6)HexNAc(3)Phos(1)": "NT=Hex(6)HexNAc(3)Phos(1);AC=1495;", "Hex(4)HexNAc(5)": "NT=Hex(4)HexNAc(5);AC=1496;", "dHex(3)Hex(3)HexNAc(3)Pent(1)": "NT=dHex(3)Hex(3)HexNAc(3)Pent(1);AC=1497;", "dHex(2)Hex(4)HexNAc(3)Pent(1)": "NT=dHex(2)Hex(4)HexNAc(3)Pent(1);AC=1498;", "dHex(1)Hex(4)HexNAc(4)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(4)Sulf(1);AC=1499;", "dHex(1)Hex(7)HexNAc(2)": "NT=dHex(1)Hex(7)HexNAc(2);AC=1500;", "dHex(1)Hex(4)HexNAc(3)NeuAc(1)": "NT=dHex(1)Hex(4)HexNAc(3)NeuAc(1);AC=1501;", "Hex(7)HexNAc(2)Phos(2)": "NT=Hex(7)HexNAc(2)Phos(2);AC=1502;", "Hex(5)HexNAc(4)Sulf(1)": "NT=Hex(5)HexNAc(4)Sulf(1);AC=1503;", "Hex(8)HexNAc(2)": "NT=Hex(8)HexNAc(2);AC=1504;", "dHex(1)Hex(3)HexNAc(4)Pent(2)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(2);AC=1505;", "dHex(1)Hex(4)HexNAc(3)NeuGc(1)": "NT=dHex(1)Hex(4)HexNAc(3)NeuGc(1);AC=1506;", "dHex(2)Hex(3)HexNAc(4)Pent(1)": "NT=dHex(2)Hex(3)HexNAc(4)Pent(1);AC=1507;", "dHex(1)Hex(3)HexNAc(5)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(5)Sulf(1);AC=1508;", "dHex(1)Hex(6)HexNAc(3)": "NT=dHex(1)Hex(6)HexNAc(3);AC=1509;", "dHex(1)Hex(3)HexNAc(4)NeuAc(1)": "NT=dHex(1)Hex(3)HexNAc(4)NeuAc(1);AC=1510;", "dHex(3)Hex(3)HexNAc(4)": "NT=dHex(3)Hex(3)HexNAc(4);AC=1511;", "dHex(1)Hex(4)HexNAc(4)Pent(1)": "NT=dHex(1)Hex(4)HexNAc(4)Pent(1);AC=1512;", "Hex(4)HexNAc(5)Sulf(1)": "NT=Hex(4)HexNAc(5)Sulf(1);AC=1513;", "Hex(7)HexNAc(3)": "NT=Hex(7)HexNAc(3);AC=1514;", "dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1);AC=1515;", "Hex(5)HexNAc(4)Me(2)Pent(1)": "NT=Hex(5)HexNAc(4)Me(2)Pent(1);AC=1516;", "Hex(3)HexNAc(6)Sulf(1)": "NT=Hex(3)HexNAc(6)Sulf(1);AC=1517;", "dHex(1)Hex(6)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(6)HexNAc(3)Sulf(1);AC=1518;", "dHex(1)Hex(4)HexNAc(5)": "NT=dHex(1)Hex(4)HexNAc(5);AC=1519;", "dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1);AC=1520;", "Hex(7)HexNAc(3)Phos(1)": "NT=Hex(7)HexNAc(3)Phos(1);AC=1521;", "Hex(6)HexNAc(4)Me(3)": "NT=Hex(6)HexNAc(4)Me(3);AC=1522;", "dHex(2)Hex(4)HexNAc(4)Sulf(1)": "NT=dHex(2)Hex(4)HexNAc(4)Sulf(1);AC=1523;", "Hex(4)HexNAc(3)NeuAc(2)": "NT=Hex(4)HexNAc(3)NeuAc(2);AC=1524;", "dHex(1)Hex(3)HexNAc(4)Pent(3)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(3);AC=1525;", "dHex(2)Hex(5)HexNAc(3)Pent(1)": "NT=dHex(2)Hex(5)HexNAc(3)Pent(1);AC=1526;", "dHex(1)Hex(5)HexNAc(4)Sulf(1)": "NT=dHex(1)Hex(5)HexNAc(4)Sulf(1);AC=1527;", "dHex(2)Hex(3)HexNAc(4)Pent(2)": "NT=dHex(2)Hex(3)HexNAc(4)Pent(2);AC=1528;", "dHex(1)Hex(5)HexNAc(3)NeuAc(1)": "NT=dHex(1)Hex(5)HexNAc(3)NeuAc(1);AC=1529;", "Hex(3)HexNAc(6)Sulf(2)": "NT=Hex(3)HexNAc(6)Sulf(2);AC=1530;", "Hex(9)HexNAc(2)": "NT=Hex(9)HexNAc(2);AC=1531;", "Hex(4)HexNAc(6)": "NT=Hex(4)HexNAc(6);AC=1532;", "dHex(3)Hex(3)HexNAc(4)Pent(1)": "NT=dHex(3)Hex(3)HexNAc(4)Pent(1);AC=1533;", "dHex(1)Hex(5)HexNAc(3)NeuGc(1)": "NT=dHex(1)Hex(5)HexNAc(3)NeuGc(1);AC=1534;", "dHex(2)Hex(4)HexNAc(4)Pent(1)": "NT=dHex(2)Hex(4)HexNAc(4)Pent(1);AC=1535;", "dHex(1)Hex(4)HexNAc(5)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(5)Sulf(1);AC=1536;", "dHex(1)Hex(7)HexNAc(3)": "NT=dHex(1)Hex(7)HexNAc(3);AC=1537;", "dHex(1)Hex(5)HexNAc(4)Pent(1)": "NT=dHex(1)Hex(5)HexNAc(4)Pent(1);AC=1538;", "dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2)": "NT=dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2);AC=1539;", "Hex(3)HexNAc(7)": "NT=Hex(3)HexNAc(7);AC=1540;", "dHex(2)Hex(5)HexNAc(4)": "NT=dHex(2)Hex(5)HexNAc(4);AC=1541;", "dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1);AC=1542;", "dHex(1)Hex(5)HexNAc(4)Sulf(2)": "NT=dHex(1)Hex(5)HexNAc(4)Sulf(2);AC=1543;", "dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1)": "NT=dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1);AC=1544;", "Hex(5)HexNAc(4)NeuGc(1)": "NT=Hex(5)HexNAc(4)NeuGc(1);AC=1545;", "dHex(1)Hex(3)HexNAc(6)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(6)Sulf(1);AC=1546;", "dHex(1)Hex(6)HexNAc(4)": "NT=dHex(1)Hex(6)HexNAc(4);AC=1547;", "dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1);AC=1548;", "Hex(7)HexNAc(4)": "NT=Hex(7)HexNAc(4);AC=1549;", "dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1)": "NT=dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1);AC=1550;", "Hex(4)HexNAc(5)NeuAc(1)": "NT=Hex(4)HexNAc(5)NeuAc(1);AC=1551;", "Hex(6)HexNAc(4)Me(3)Pent(1)": "NT=Hex(6)HexNAc(4)Me(3)Pent(1);AC=1552;", "dHex(1)Hex(7)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(7)HexNAc(3)Sulf(1);AC=1553;", "dHex(1)Hex(7)HexNAc(3)Phos(1)": "NT=dHex(1)Hex(7)HexNAc(3)Phos(1);AC=1554;", "dHex(1)Hex(5)HexNAc(5)": "NT=dHex(1)Hex(5)HexNAc(5);AC=1555;", "dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1);AC=1556;", "dHex(3)Hex(4)HexNAc(4)Sulf(1)": "NT=dHex(3)Hex(4)HexNAc(4)Sulf(1);AC=1557;", "Hex(3)HexNAc(7)Sulf(1)": "NT=Hex(3)HexNAc(7)Sulf(1);AC=1558;", "Hex(6)HexNAc(5)": "NT=Hex(6)HexNAc(5);AC=1559;", "Hex(5)HexNAc(4)NeuAc(1)Sulf(1)": "NT=Hex(5)HexNAc(4)NeuAc(1)Sulf(1);AC=1560;", "Hex(3)HexNAc(6)NeuAc(1)": "NT=Hex(3)HexNAc(6)NeuAc(1);AC=1561;", "dHex(2)Hex(3)HexNAc(6)": "NT=dHex(2)Hex(3)HexNAc(6);AC=1562;", "Hex(1)HexNAc(1)NeuGc(1)": "NT=Hex(1)HexNAc(1)NeuGc(1);AC=1563;", "dHex(1)Hex(2)HexNAc(1)": "NT=dHex(1)Hex(2)HexNAc(1);AC=1564;", "HexNAc(3)Sulf(1)": "NT=HexNAc(3)Sulf(1);AC=1565;", "Hex(3)HexNAc(1)": "NT=Hex(3)HexNAc(1);AC=1566;", "Hex(1)HexNAc(1)Kdn(1)Sulf(1)": "NT=Hex(1)HexNAc(1)Kdn(1)Sulf(1);AC=1567;", "HexNAc(2)NeuAc(1)": "NT=HexNAc(2)NeuAc(1);AC=1568;", "HexNAc(1)Kdn(2)": "NT=HexNAc(1)Kdn(2);AC=1570;", "Hex(3)HexNAc(1)Me(1)": "NT=Hex(3)HexNAc(1)Me(1);AC=1571;", "Hex(2)HexA(1)Pent(1)Sulf(1)": "NT=Hex(2)HexA(1)Pent(1)Sulf(1);AC=1572;", "HexNAc(2)NeuGc(1)": "NT=HexNAc(2)NeuGc(1);AC=1573;", "Hex(4)Phos(1)": "NT=Hex(4)Phos(1);AC=1575;", "Hex(1)HexNAc(1)NeuAc(1)Sulf(1)": "NT=Hex(1)HexNAc(1)NeuAc(1)Sulf(1);AC=1577;", "Hex(1)HexA(1)HexNAc(2)": "NT=Hex(1)HexA(1)HexNAc(2);AC=1578;", "dHex(1)Hex(2)HexNAc(1)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(1)Sulf(1);AC=1579;", "dHex(1)HexNAc(3)": "NT=dHex(1)HexNAc(3);AC=1580;", "dHex(1)Hex(1)HexNAc(1)Kdn(1)": "NT=dHex(1)Hex(1)HexNAc(1)Kdn(1);AC=1581;", "Hex(1)HexNAc(3)": "NT=Hex(1)HexNAc(3);AC=1582;", "HexNAc(2)NeuAc(1)Sulf(1)": "NT=HexNAc(2)NeuAc(1)Sulf(1);AC=1583;", "dHex(2)Hex(3)": "NT=dHex(2)Hex(3);AC=1584;", "Hex(2)HexA(1)HexNAc(1)Sulf(1)": "NT=Hex(2)HexA(1)HexNAc(1)Sulf(1);AC=1585;", "dHex(2)Hex(2)HexA(1)": "NT=dHex(2)Hex(2)HexA(1);AC=1586;", "dHex(1)Hex(1)HexNAc(2)Sulf(1)": "NT=dHex(1)Hex(1)HexNAc(2)Sulf(1);AC=1587;", "dHex(1)Hex(1)HexNAc(1)NeuAc(1)": "NT=dHex(1)Hex(1)HexNAc(1)NeuAc(1);AC=1588;", "Hex(2)HexNAc(2)Sulf(1)": "NT=Hex(2)HexNAc(2)Sulf(1);AC=1589;", "Hex(5)": "NT=Hex(5);AC=1590;", "HexNAc(4)": "NT=HexNAc(4);AC=1591;", "HexNAc(1)NeuGc(2)": "NT=HexNAc(1)NeuGc(2);AC=1592;", "dHex(1)Hex(1)HexNAc(1)NeuGc(1)": "NT=dHex(1)Hex(1)HexNAc(1)NeuGc(1);AC=1593;", "dHex(2)Hex(2)HexNAc(1)": "NT=dHex(2)Hex(2)HexNAc(1);AC=1594;", "Hex(2)HexNAc(1)NeuGc(1)": "NT=Hex(2)HexNAc(1)NeuGc(1);AC=1595;", "dHex(1)Hex(3)HexNAc(1)": "NT=dHex(1)Hex(3)HexNAc(1);AC=1596;", "dHex(1)Hex(2)HexA(1)HexNAc(1)": "NT=dHex(1)Hex(2)HexA(1)HexNAc(1);AC=1597;", "Hex(1)HexNAc(3)Sulf(1)": "NT=Hex(1)HexNAc(3)Sulf(1);AC=1598;", "Hex(4)HexNAc(1)": "NT=Hex(4)HexNAc(1);AC=1599;", "Hex(1)HexNAc(2)NeuAc(1)": "NT=Hex(1)HexNAc(2)NeuAc(1);AC=1600;", "Hex(1)HexNAc(2)NeuGc(1)": "NT=Hex(1)HexNAc(2)NeuGc(1);AC=1602;", "Hex(5)Phos(1)": "NT=Hex(5)Phos(1);AC=1604;", "dHex(2)Hex(1)HexNAc(1)Kdn(1)": "NT=dHex(2)Hex(1)HexNAc(1)Kdn(1);AC=1606;", "dHex(1)Hex(3)HexNAc(1)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(1)Sulf(1);AC=1607;", "dHex(1)Hex(1)HexNAc(3)": "NT=dHex(1)Hex(1)HexNAc(3);AC=1608;", "dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1)": "NT=dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1);AC=1609;", "Hex(2)HexNAc(3)": "NT=Hex(2)HexNAc(3);AC=1610;", "Hex(1)HexNAc(2)NeuAc(1)Sulf(1)": "NT=Hex(1)HexNAc(2)NeuAc(1)Sulf(1);AC=1611;", "dHex(2)Hex(4)": "NT=dHex(2)Hex(4);AC=1612;", "dHex(2)HexNAc(2)Kdn(1)": "NT=dHex(2)HexNAc(2)Kdn(1);AC=1614;", "dHex(1)Hex(2)HexNAc(2)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(2)Sulf(1);AC=1615;", "dHex(1)HexNAc(4)": "NT=dHex(1)HexNAc(4);AC=1616;", "Hex(1)HexNAc(1)NeuAc(1)NeuGc(1)": "NT=Hex(1)HexNAc(1)NeuAc(1)NeuGc(1);AC=1617;", "dHex(1)Hex(1)HexNAc(2)Kdn(1)": "NT=dHex(1)Hex(1)HexNAc(2)Kdn(1);AC=1618;", "Hex(1)HexNAc(1)NeuGc(2)": "NT=Hex(1)HexNAc(1)NeuGc(2);AC=1619;", "Hex(1)HexNAc(1)NeuAc(2)Ac(1)": "NT=Hex(1)HexNAc(1)NeuAc(2)Ac(1);AC=1620;", "dHex(2)Hex(2)HexA(1)HexNAc(1)": "NT=dHex(2)Hex(2)HexA(1)HexNAc(1);AC=1621;", "dHex(1)Hex(1)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(1)HexNAc(3)Sulf(1);AC=1622;", "Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1)": "NT=Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1);AC=1623;", "dHex(1)Hex(1)HexNAc(2)NeuAc(1)": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(1);AC=1624;", "dHex(1)Hex(3)HexA(1)HexNAc(1)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(1);AC=1625;", "Hex(2)HexNAc(3)Sulf(1)": "NT=Hex(2)HexNAc(3)Sulf(1);AC=1626;", "Hex(5)HexNAc(1)": "NT=Hex(5)HexNAc(1);AC=1627;", "HexNAc(5)": "NT=HexNAc(5);AC=1628;", "Hex(1)HexNAc(1)NeuAc(2)Ac(2)": "NT=Hex(1)HexNAc(1)NeuAc(2)Ac(2);AC=1630;", "Hex(2)HexNAc(2)NeuGc(1)": "NT=Hex(2)HexNAc(2)NeuGc(1);AC=1631;", "Hex(5)Phos(3)": "NT=Hex(5)Phos(3);AC=1632;", "Hex(6)Phos(1)": "NT=Hex(6)Phos(1);AC=1633;", "dHex(1)Hex(2)HexA(1)HexNAc(2)": "NT=dHex(1)Hex(2)HexA(1)HexNAc(2);AC=1634;", "dHex(2)Hex(3)HexNAc(1)Sulf(1)": "NT=dHex(2)Hex(3)HexNAc(1)Sulf(1);AC=1635;", "Hex(1)HexNAc(3)NeuAc(1)": "NT=Hex(1)HexNAc(3)NeuAc(1);AC=1636;", "dHex(2)Hex(1)HexNAc(3)": "NT=dHex(2)Hex(1)HexNAc(3);AC=1637;", "Hex(1)HexNAc(3)NeuGc(1)": "NT=Hex(1)HexNAc(3)NeuGc(1);AC=1638;", "dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1);AC=1639;", "dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1);AC=1640;", "dHex(1)Hex(1)HexA(1)HexNAc(3)": "NT=dHex(1)Hex(1)HexA(1)HexNAc(3);AC=1641;", "Hex(2)HexNAc(2)NeuAc(1)Sulf(1)": "NT=Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1642;", "dHex(2)Hex(2)HexNAc(2)Sulf(1)": "NT=dHex(2)Hex(2)HexNAc(2)Sulf(1);AC=1643;", "dHex(2)Hex(1)HexNAc(2)Kdn(1)": "NT=dHex(2)Hex(1)HexNAc(2)Kdn(1);AC=1644;", "dHex(1)Hex(1)HexNAc(4)": "NT=dHex(1)Hex(1)HexNAc(4);AC=1645;", "Hex(2)HexNAc(4)": "NT=Hex(2)HexNAc(4);AC=1646;", "Hex(2)HexNAc(1)NeuGc(2)": "NT=Hex(2)HexNAc(1)NeuGc(2);AC=1647;", "dHex(2)Hex(4)HexNAc(1)": "NT=dHex(2)Hex(4)HexNAc(1);AC=1648;", "Hex(1)HexNAc(2)NeuAc(2)": "NT=Hex(1)HexNAc(2)NeuAc(2);AC=1649;", "dHex(2)Hex(1)HexNAc(2)NeuAc(1)": "NT=dHex(2)Hex(1)HexNAc(2)NeuAc(1);AC=1650;", "dHex(1)Hex(2)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(3)Sulf(1);AC=1651;", "dHex(1)HexNAc(5)": "NT=dHex(1)HexNAc(5);AC=1652;", "dHex(2)Hex(1)HexNAc(2)NeuGc(1)": "NT=dHex(2)Hex(1)HexNAc(2)NeuGc(1);AC=1653;", "dHex(3)Hex(2)HexNAc(2)": "NT=dHex(3)Hex(2)HexNAc(2);AC=1654;", "Hex(3)HexNAc(3)Sulf(1)": "NT=Hex(3)HexNAc(3)Sulf(1);AC=1655;", "dHex(2)Hex(2)HexNAc(2)Sulf(2)": "NT=dHex(2)Hex(2)HexNAc(2)Sulf(2);AC=1656;", "dHex(1)Hex(2)HexNAc(2)NeuGc(1)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(1);AC=1657;", "dHex(1)Hex(1)HexNAc(3)NeuAc(1)": "NT=dHex(1)Hex(1)HexNAc(3)NeuAc(1);AC=1658;", "Hex(6)Phos(3)": "NT=Hex(6)Phos(3);AC=1659;", "dHex(1)Hex(3)HexA(1)HexNAc(2)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(2);AC=1660;", "dHex(1)Hex(1)HexNAc(3)NeuGc(1)": "NT=dHex(1)Hex(1)HexNAc(3)NeuGc(1);AC=1661;", "Hex(1)HexNAc(2)NeuAc(2)Sulf(1)": "NT=Hex(1)HexNAc(2)NeuAc(2)Sulf(1);AC=1662;", "dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1)": "NT=dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1);AC=1663;", "Hex(1)HexNAc(1)NeuAc(3)": "NT=Hex(1)HexNAc(1)NeuAc(3);AC=1664;", "Hex(2)HexNAc(3)NeuGc(1)": "NT=Hex(2)HexNAc(3)NeuGc(1);AC=1665;", "dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1666;", "dHex(3)Hex(1)HexNAc(2)Kdn(1)": "NT=dHex(3)Hex(1)HexNAc(2)Kdn(1);AC=1667;", "dHex(2)Hex(3)HexNAc(2)Sulf(1)": "NT=dHex(2)Hex(3)HexNAc(2)Sulf(1);AC=1668;", "dHex(2)Hex(2)HexNAc(2)Kdn(1)": "NT=dHex(2)Hex(2)HexNAc(2)Kdn(1);AC=1669;", "dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1)": "NT=dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1);AC=1670;", "dHex(1)Hex(2)HexNAc(4)": "NT=dHex(1)Hex(2)HexNAc(4);AC=1671;", "Hex(1)HexNAc(1)NeuGc(3)": "NT=Hex(1)HexNAc(1)NeuGc(3);AC=1672;", "dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1);AC=1673;", "dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1);AC=1674;", "dHex(1)Hex(1)HexNAc(2)NeuAc(2)": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(2);AC=1675;", "dHex(3)HexNAc(3)Kdn(1)": "NT=dHex(3)HexNAc(3)Kdn(1);AC=1676;", "Hex(2)HexNAc(3)NeuAc(1)Sulf(1)": "NT=Hex(2)HexNAc(3)NeuAc(1)Sulf(1);AC=1678;", "dHex(2)Hex(2)HexNAc(3)Sulf(1)": "NT=dHex(2)Hex(2)HexNAc(3)Sulf(1);AC=1679;", "dHex(2)HexNAc(5)": "NT=dHex(2)HexNAc(5);AC=1680;", "Hex(2)HexNAc(2)NeuAc(2)": "NT=Hex(2)HexNAc(2)NeuAc(2);AC=1681;", "dHex(2)Hex(2)HexNAc(2)NeuAc(1)": "NT=dHex(2)Hex(2)HexNAc(2)NeuAc(1);AC=1682;", "dHex(1)Hex(3)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(3)Sulf(1);AC=1683;", "dHex(2)Hex(2)HexNAc(2)NeuGc(1)": "NT=dHex(2)Hex(2)HexNAc(2)NeuGc(1);AC=1684;", "Hex(2)HexNAc(5)": "NT=Hex(2)HexNAc(5);AC=1685;", "dHex(1)Hex(3)HexNAc(2)NeuGc(1)": "NT=dHex(1)Hex(3)HexNAc(2)NeuGc(1);AC=1686;", "Hex(1)HexNAc(3)NeuAc(2)": "NT=Hex(1)HexNAc(3)NeuAc(2);AC=1687;", "dHex(1)Hex(2)HexNAc(3)NeuAc(1)": "NT=dHex(1)Hex(2)HexNAc(3)NeuAc(1);AC=1688;", "dHex(3)Hex(2)HexNAc(3)": "NT=dHex(3)Hex(2)HexNAc(3);AC=1689;", "Hex(7)Phos(3)": "NT=Hex(7)Phos(3);AC=1690;", "dHex(1)Hex(4)HexA(1)HexNAc(2)": "NT=dHex(1)Hex(4)HexA(1)HexNAc(2);AC=1691;", "Hex(3)HexNAc(3)NeuAc(1)": "NT=Hex(3)HexNAc(3)NeuAc(1);AC=1692;", "dHex(1)Hex(3)HexA(2)HexNAc(2)": "NT=dHex(1)Hex(3)HexA(2)HexNAc(2);AC=1693;", "Hex(2)HexNAc(2)NeuAc(2)Sulf(1)": "NT=Hex(2)HexNAc(2)NeuAc(2)Sulf(1);AC=1694;", "dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1)": "NT=dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1695;", "Hex(3)HexNAc(3)NeuGc(1)": "NT=Hex(3)HexNAc(3)NeuGc(1);AC=1696;", "dHex(4)Hex(1)HexNAc(2)Kdn(1)": "NT=dHex(4)Hex(1)HexNAc(2)Kdn(1);AC=1697;", "dHex(3)Hex(2)HexNAc(2)Kdn(1)": "NT=dHex(3)Hex(2)HexNAc(2)Kdn(1);AC=1698;", "dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1)": "NT=dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1);AC=1699;", "Hex(2)HexNAc(4)NeuAc(1)": "NT=Hex(2)HexNAc(4)NeuAc(1);AC=1700;", "dHex(2)Hex(2)HexNAc(4)": "NT=dHex(2)Hex(2)HexNAc(4);AC=1701;", "dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1)": "NT=dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1);AC=1702;", "dHex(4)HexNAc(3)Kdn(1)": "NT=dHex(4)HexNAc(3)Kdn(1);AC=1703;", "Hex(2)HexNAc(1)NeuGc(3)": "NT=Hex(2)HexNAc(1)NeuGc(3);AC=1705;", "dHex(4)Hex(1)HexNAc(1)Kdn(2)": "NT=dHex(4)Hex(1)HexNAc(1)Kdn(2);AC=1706;", "dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1);AC=1707;", "dHex(1)Hex(2)HexNAc(2)NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(2);AC=1708;", "dHex(3)Hex(1)HexNAc(3)Kdn(1)": "NT=dHex(3)Hex(1)HexNAc(3)Kdn(1);AC=1709;", "Hex(3)HexNAc(3)NeuAc(1)Sulf(1)": "NT=Hex(3)HexNAc(3)NeuAc(1)Sulf(1);AC=1711;", "Hex(3)HexNAc(2)NeuAc(2)": "NT=Hex(3)HexNAc(2)NeuAc(2);AC=1712;", "Hex(3)HexNAc(3)NeuGc(1)Sulf(1)": "NT=Hex(3)HexNAc(3)NeuGc(1)Sulf(1);AC=1713;", "dHex(1)Hex(2)HexNAc(2)NeuGc(2)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(2);AC=1714;", "dHex(2)Hex(3)HexNAc(2)NeuGc(1)": "NT=dHex(2)Hex(3)HexNAc(2)NeuGc(1);AC=1715;", "dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1);AC=1716;", "Hex(2)HexNAc(3)NeuAc(2)": "NT=Hex(2)HexNAc(3)NeuAc(2);AC=1717;", "dHex(2)Hex(2)HexNAc(3)NeuAc(1)": "NT=dHex(2)Hex(2)HexNAc(3)NeuAc(1);AC=1718;", "dHex(4)Hex(2)HexNAc(3)": "NT=dHex(4)Hex(2)HexNAc(3);AC=1719;", "Hex(2)HexNAc(3)NeuAc(1)NeuGc(1)": "NT=Hex(2)HexNAc(3)NeuAc(1)NeuGc(1);AC=1720;", "dHex(2)Hex(2)HexNAc(3)NeuGc(1)": "NT=dHex(2)Hex(2)HexNAc(3)NeuGc(1);AC=1721;", "dHex(3)Hex(3)HexNAc(3)": "NT=dHex(3)Hex(3)HexNAc(3);AC=1722;", "Hex(8)Phos(3)": "NT=Hex(8)Phos(3);AC=1723;", "dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1);AC=1724;", "Hex(2)HexNAc(3)NeuGc(2)": "NT=Hex(2)HexNAc(3)NeuGc(2);AC=1725;", "dHex(4)Hex(2)HexNAc(2)Kdn(1)": "NT=dHex(4)Hex(2)HexNAc(2)Kdn(1);AC=1726;", "dHex(1)Hex(2)HexNAc(4)NeuAc(1)": "NT=dHex(1)Hex(2)HexNAc(4)NeuAc(1);AC=1727;", "dHex(3)Hex(2)HexNAc(4)": "NT=dHex(3)Hex(2)HexNAc(4);AC=1728;", "Hex(1)HexNAc(1)NeuGc(4)": "NT=Hex(1)HexNAc(1)NeuGc(4);AC=1729;", "dHex(4)Hex(1)HexNAc(3)Kdn(1)": "NT=dHex(4)Hex(1)HexNAc(3)Kdn(1);AC=1730;", "Hex(4)HexNAc(4)Sulf(2)": "NT=Hex(4)HexNAc(4)Sulf(2);AC=1732;", "dHex(3)Hex(2)HexNAc(3)Kdn(1)": "NT=dHex(3)Hex(2)HexNAc(3)Kdn(1);AC=1733;", "dHex(2)Hex(2)HexNAc(5)": "NT=dHex(2)Hex(2)HexNAc(5);AC=1735;", "dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1);AC=1736;", "dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1);AC=1737;", "Hex(3)HexNAc(3)NeuAc(2)": "NT=Hex(3)HexNAc(3)NeuAc(2);AC=1738;", "dHex(2)Hex(3)HexNAc(3)NeuAc(1)": "NT=dHex(2)Hex(3)HexNAc(3)NeuAc(1);AC=1739;", "dHex(4)Hex(3)HexNAc(3)": "NT=dHex(4)Hex(3)HexNAc(3);AC=1740;", "Hex(9)Phos(3)": "NT=Hex(9)Phos(3);AC=1742;", "dHex(2)HexNAc(7)": "NT=dHex(2)HexNAc(7);AC=1743;", "Hex(2)HexNAc(1)NeuGc(4)": "NT=Hex(2)HexNAc(1)NeuGc(4);AC=1744;", "Hex(3)HexNAc(3)NeuAc(2)Sulf(1)": "NT=Hex(3)HexNAc(3)NeuAc(2)Sulf(1);AC=1745;", "dHex(2)Hex(3)HexNAc(5)": "NT=dHex(2)Hex(3)HexNAc(5);AC=1746;", "dHex(1)Hex(2)HexNAc(2)NeuGc(3)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(3);AC=1747;", "dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1);AC=1748;", "Hex(2)HexNAc(3)NeuAc(3)": "NT=Hex(2)HexNAc(3)NeuAc(3);AC=1749;", "dHex(1)Hex(3)HexNAc(3)NeuAc(2)": "NT=dHex(1)Hex(3)HexNAc(3)NeuAc(2);AC=1750;", "dHex(3)Hex(3)HexNAc(3)NeuAc(1)": "NT=dHex(3)Hex(3)HexNAc(3)NeuAc(1);AC=1751;", "Hex(2)HexNAc(3)NeuGc(3)": "NT=Hex(2)HexNAc(3)NeuGc(3);AC=1752;", "Hex(10)Phos(3)": "NT=Hex(10)Phos(3);AC=1753;", "dHex(1)Hex(2)HexNAc(4)NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(4)NeuAc(2);AC=1754;", "Hex(1)HexNAc(1)NeuGc(5)": "NT=Hex(1)HexNAc(1)NeuGc(5);AC=1755;", "Hex(4)HexNAc(4)NeuAc(1)Sulf(2)": "NT=Hex(4)HexNAc(4)NeuAc(1)Sulf(2);AC=1756;", "Hex(4)HexNAc(4)NeuGc(1)Sulf(2)": "NT=Hex(4)HexNAc(4)NeuGc(1)Sulf(2);AC=1757;", "dHex(2)Hex(3)HexNAc(3)NeuAc(2)": "NT=dHex(2)Hex(3)HexNAc(3)NeuAc(2);AC=1758;", "Hex(4)HexNAc(4)NeuAc(1)Sulf(3)": "NT=Hex(4)HexNAc(4)NeuAc(1)Sulf(3);AC=1759;", "dHex(2)Hex(2)HexNAc(2)": "NT=dHex(2)Hex(2)HexNAc(2);AC=1760;", "dHex(1)Hex(3)HexNAc(2)": "NT=dHex(1)Hex(3)HexNAc(2);AC=1761;", "dHex(1)Hex(2)HexNAc(3)": "NT=dHex(1)Hex(2)HexNAc(3);AC=1762;", "Hex(3)HexNAc(3)": "NT=Hex(3)HexNAc(3);AC=1763;", "dHex(1)Hex(3)HexNAc(2)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(2)Sulf(1);AC=1764;", "dHex(2)Hex(3)HexNAc(2)": "NT=dHex(2)Hex(3)HexNAc(2);AC=1765;", "dHex(1)Hex(4)HexNAc(2)": "NT=dHex(1)Hex(4)HexNAc(2);AC=1766;", "dHex(2)Hex(2)HexNAc(3)": "NT=dHex(2)Hex(2)HexNAc(3);AC=1767;", "dHex(1)Hex(3)HexNAc(3)": "NT=dHex(1)Hex(3)HexNAc(3);AC=1768;", "Hex(4)HexNAc(3)": "NT=Hex(4)HexNAc(3);AC=1769;", "dHex(2)Hex(4)HexNAc(2)": "NT=dHex(2)Hex(4)HexNAc(2);AC=1770;", "dHex(2)Hex(3)HexNAc(3)": "NT=dHex(2)Hex(3)HexNAc(3);AC=1771;", "Hex(3)HexNAc(5)": "NT=Hex(3)HexNAc(5);AC=1772;", "Hex(4)HexNAc(3)NeuAc(1)": "NT=Hex(4)HexNAc(3)NeuAc(1);AC=1773;", "dHex(2)Hex(3)HexNAc(4)": "NT=dHex(2)Hex(3)HexNAc(4);AC=1774;", "dHex(1)Hex(3)HexNAc(5)": "NT=dHex(1)Hex(3)HexNAc(5);AC=1775;", "Hex(3)HexNAc(6)": "NT=Hex(3)HexNAc(6);AC=1776;", "Hex(4)HexNAc(4)NeuAc(1)": "NT=Hex(4)HexNAc(4)NeuAc(1);AC=1777;", "dHex(2)Hex(4)HexNAc(4)": "NT=dHex(2)Hex(4)HexNAc(4);AC=1778;", "Hex(6)HexNAc(4)": "NT=Hex(6)HexNAc(4);AC=1779;", "Hex(5)HexNAc(5)": "NT=Hex(5)HexNAc(5);AC=1780;", "dHex(1)Hex(3)HexNAc(6)": "NT=dHex(1)Hex(3)HexNAc(6);AC=1781;", "dHex(1)Hex(4)HexNAc(4)NeuAc(1)": "NT=dHex(1)Hex(4)HexNAc(4)NeuAc(1);AC=1782;", "dHex(3)Hex(4)HexNAc(4)": "NT=dHex(3)Hex(4)HexNAc(4);AC=1783;", "dHex(1)Hex(3)HexNAc(5)NeuAc(1)": "NT=dHex(1)Hex(3)HexNAc(5)NeuAc(1);AC=1784;", "dHex(2)Hex(4)HexNAc(5)": "NT=dHex(2)Hex(4)HexNAc(5);AC=1785;", "Hex(1)HexNAc(1)NeuAc(1)Ac(1)": "NT=Hex(1)HexNAc(1)NeuAc(1)Ac(1);AC=1786;", "Label:13C(2)15N(2)": "NT=Label:13C(2)15N(2);AC=1787;", "Xlink:DSS[155]": "NT=Xlink:DSS[155];AC=1789;", "NQIGG": "NT=NQIGG;AC=1799;", "Carboxyethylpyrrole": "NT=Carboxyethylpyrrole;AC=1800;", "Fluorescein-tyramine": "NT=Fluorescein-tyramine;AC=1801;", "GEE": "NT=GEE;AC=1824;", "RNPXL": "NT=RNPXL;AC=1825;", "Glu->pyro-Glu+Methyl": "NT=Glu->pyro-Glu+Methyl;AC=1826;", "Glu->pyro-Glu+Methyl:2H(2)13C(1)": "NT=Glu->pyro-Glu+Methyl:2H(2)13C(1);AC=1827;", "LRGG+methyl": "NT=LRGG+methyl;AC=1828;", "LRGG+dimethyl": "NT=LRGG+dimethyl;AC=1829;", "Biotin-tyramide": "NT=Biotin-tyramide;AC=1830;", "Tris": "NT=Tris;AC=1831;", "IASD": "NT=IASD;AC=1832;", "NP40": "NT=NP40;AC=1833;", "Tween20": "NT=Tween20;AC=1834;", "Tween80": "NT=Tween80;AC=1835;", "Triton": "NT=Triton;AC=1836;", "Brij35": "NT=Brij35;AC=1837;", "Brij58": "NT=Brij58;AC=1838;", "betaFNA": "NT=betaFNA;AC=1839;", "dHex(1)Hex(7)HexNAc(4)": "NT=dHex(1)Hex(7)HexNAc(4);AC=1840;", "Biotin:Thermo-21328": "NT=Biotin:Thermo-21328;AC=1841;", "Xlink:DSSO": "NT=Xlink:DSSO;AC=1842;", "PhosphoCytidine": "NT=PhosphoCytidine;AC=1843;", "Xlink:EGS": "NT=Xlink:EGS;AC=1844;", "AzidoF": "NT=AzidoF;AC=1845;", "Dimethylaminoethyl": "NT=Dimethylaminoethyl;AC=1846;", "Gluratylation": "NT=Gluratylation;AC=1848;", "hydroxyisobutyryl": "NT=hydroxyisobutyryl;AC=1849;", "MeMePhosphorothioate": "NT=MeMePhosphorothioate;AC=1868;", "Cation:Fe[III]": "NT=Cation:Fe[III];AC=1870;", "DTT": "NT=DTT;AC=1871;", "DYn-2": "NT=DYn-2;AC=1872;", "MesitylOxide": "NT=MesitylOxide;AC=1873;", "methylol": "NT=methylol;AC=1875;", "Xlink:DSS": "NT=Xlink:DSS;AC=1876;", "Xlink:DSS[259]": "NT=Xlink:DSS[259];AC=1877;", "Xlink:DSSO[176]": "NT=Xlink:DSSO[176];AC=1878;", "Xlink:DSSO[175]": "NT=Xlink:DSSO[175];AC=1879;", "Xlink:DSSO[279]": "NT=Xlink:DSSO[279];AC=1880;", "Xlink:DSSO[54]": "NT=Xlink:DSSO[54];AC=1881;", "Xlink:DSSO[86]": "NT=Xlink:DSSO[86];AC=1882;", "Xlink:DSSO[104]": "NT=Xlink:DSSO[104];AC=1883;", "Xlink:BuUrBu": "NT=Xlink:BuUrBu;AC=1884;", "Xlink:BuUrBu[111]": "NT=Xlink:BuUrBu[111];AC=1885;", "Xlink:BuUrBu[85]": "NT=Xlink:BuUrBu[85];AC=1886;", "Xlink:BuUrBu[213]": "NT=Xlink:BuUrBu[213];AC=1887;", "Xlink:BuUrBu[214]": "NT=Xlink:BuUrBu[214];AC=1888;", "Xlink:BuUrBu[317]": "NT=Xlink:BuUrBu[317];AC=1889;", "Xlink:DTBP": "NT=Xlink:DTBP;AC=1891;", "Xlink:DST": "NT=Xlink:DST;AC=1892;", "Xlink:DTSSP": "NT=Xlink:DTSSP;AC=1893;", "Xlink:SMCC": "NT=Xlink:SMCC;AC=1895;", "Xlink:DSSO[158]": "NT=Xlink:DSSO[158];AC=1896;", "Xlink:EGS[226]": "NT=Xlink:EGS[226];AC=1897;", "Xlink:DSS[138]": "NT=Xlink:DSS[138];AC=1898;", "Xlink:BuUrBu[196]": "NT=Xlink:BuUrBu[196];AC=1899;", "Xlink:DTBP[172]": "NT=Xlink:DTBP[172];AC=1900;", "Xlink:DST[114]": "NT=Xlink:DST[114];AC=1901;", "Xlink:DTSSP[174]": "NT=Xlink:DTSSP[174];AC=1902;", "Xlink:SMCC[219]": "NT=Xlink:SMCC[219];AC=1903;", "Xlink:BS2G[96]": "NT=Xlink:BS2G[96];AC=1905;", "Xlink:BS2G[113]": "NT=Xlink:BS2G[113];AC=1906;", "Xlink:BS2G[114]": "NT=Xlink:BS2G[114];AC=1907;", "Xlink:BS2G[217]": "NT=Xlink:BS2G[217];AC=1908;", "Xlink:BS2G": "NT=Xlink:BS2G;AC=1909;", "Cation:Al[III]": "NT=Cation:Al[III];AC=1910;", "Xlink:DMP[139]": "NT=Xlink:DMP[139];AC=1911;", "Xlink:DMP[122]": "NT=Xlink:DMP[122];AC=1912;", "glyoxalAGE": "NT=glyoxalAGE;AC=1913;", "Met->AspSA": "NT=Met->AspSA;AC=1914;", "Decarboxylation": "NT=Decarboxylation;AC=1915;", "Aspartylurea": "NT=Aspartylurea;AC=1916;", "Formylasparagine": "NT=Formylasparagine;AC=1917;", "Carbonyl": "NT=Carbonyl;AC=1918;", "AFB1_Dialdehyde": "NT=AFB1_Dialdehyde;AC=1920;", "Pro->HAVA": "NT=Pro->HAVA;AC=1922;", "Delta:H(-4)O(2)": "NT=Delta:H(-4)O(2);AC=1923;", "Delta:H(-4)O(3)": "NT=Delta:H(-4)O(3);AC=1924;", "Delta:O(4)": "NT=Delta:O(4);AC=1925;", "Delta:H(4)C(3)O(2)": "NT=Delta:H(4)C(3)O(2);AC=1926;", "Delta:H(4)C(5)O(1)": "NT=Delta:H(4)C(5)O(1);AC=1927;", "Delta:H(10)C(8)O(1)": "NT=Delta:H(10)C(8)O(1);AC=1928;", "Delta:H(6)C(7)O(4)": "NT=Delta:H(6)C(7)O(4);AC=1929;", "Pent(2)": "NT=Pent(2);AC=1930;", "Pent(1)HexNAc(1)": "NT=Pent(1)HexNAc(1);AC=1931;", "Hex(2)Sulf(1)": "NT=Hex(2)Sulf(1);AC=1932;", "Hex(1)Pent(2)Me(1)": "NT=Hex(1)Pent(2)Me(1);AC=1933;", "HexNAc(2)Sulf(1)": "NT=HexNAc(2)Sulf(1);AC=1934;", "Hex(1)Pent(3)Me(1)": "NT=Hex(1)Pent(3)Me(1);AC=1935;", "Hex(2)Pent(2)": "NT=Hex(2)Pent(2);AC=1936;", "Hex(2)Pent(2)Me(1)": "NT=Hex(2)Pent(2)Me(1);AC=1937;", "Hex(4)HexA(1)": "NT=Hex(4)HexA(1);AC=1938;", "Hex(2)HexNAc(1)Pent(1)HexA(1)": "NT=Hex(2)HexNAc(1)Pent(1)HexA(1);AC=1939;", "Hex(3)HexNAc(1)HexA(1)": "NT=Hex(3)HexNAc(1)HexA(1);AC=1940;", "Hex(1)HexNAc(2)dHex(2)Sulf(1)": "NT=Hex(1)HexNAc(2)dHex(2)Sulf(1);AC=1941;", "HexA(2)HexNAc(3)": "NT=HexA(2)HexNAc(3);AC=1942;", "dHex(1)Hex(4)HexA(1)": "NT=dHex(1)Hex(4)HexA(1);AC=1943;", "Hex(5)HexA(1)": "NT=Hex(5)HexA(1);AC=1944;", "Hex(4)HexA(1)HexNAc(1)": "NT=Hex(4)HexA(1)HexNAc(1);AC=1945;", "dHex(3)Hex(3)HexNAc(1)": "NT=dHex(3)Hex(3)HexNAc(1);AC=1946;", "Hex(6)HexNAc(1)": "NT=Hex(6)HexNAc(1);AC=1947;", "Hex(1)HexNAc(4)dHex(1)Sulf(1)": "NT=Hex(1)HexNAc(4)dHex(1)Sulf(1);AC=1948;", "dHex(1)Hex(2)HexNAc(1)NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(1)NeuAc(2);AC=1949;", "dHex(3)Hex(3)HexNAc(2)": "NT=dHex(3)Hex(3)HexNAc(2);AC=1950;", "dHex(2)Hex(1)HexNAc(4)Sulf(1)": "NT=dHex(2)Hex(1)HexNAc(4)Sulf(1);AC=1951;", "dHex(1)Hex(2)HexNAc(4)Sulf(2)": "NT=dHex(1)Hex(2)HexNAc(4)Sulf(2);AC=1952;", "Hex(9)": "NT=Hex(9);AC=1953;", "dHex(2)Hex(3)HexNAc(3)Sulf(1)": "NT=dHex(2)Hex(3)HexNAc(3)Sulf(1);AC=1954;", "dHex(2)Hex(5)HexNAc(2)Me(1)": "NT=dHex(2)Hex(5)HexNAc(2)Me(1);AC=1955;", "dHex(2)Hex(2)HexNAc(4)Sulf(2)": "NT=dHex(2)Hex(2)HexNAc(4)Sulf(2);AC=1956;", "Hex(9)HexNAc(1)": "NT=Hex(9)HexNAc(1);AC=1957;", "dHex(3)Hex(2)HexNAc(4)Sulf(2)": "NT=dHex(3)Hex(2)HexNAc(4)Sulf(2);AC=1958;", "Hex(4)HexNAc(4)NeuGc(1)": "NT=Hex(4)HexNAc(4)NeuGc(1);AC=1959;", "dHex(4)Hex(3)HexNAc(2)NeuAc(1)": "NT=dHex(4)Hex(3)HexNAc(2)NeuAc(1);AC=1960;", "Hex(3)HexNAc(5)NeuAc(1)": "NT=Hex(3)HexNAc(5)NeuAc(1);AC=1961;", "Hex(10)HexNAc(1)": "NT=Hex(10)HexNAc(1);AC=1962;", "dHex(1)Hex(8)HexNAc(2)": "NT=dHex(1)Hex(8)HexNAc(2);AC=1963;", "Hex(3)HexNAc(4)NeuAc(2)": "NT=Hex(3)HexNAc(4)NeuAc(2);AC=1964;", "dHex(2)Hex(3)HexNAc(4)NeuAc(1)": "NT=dHex(2)Hex(3)HexNAc(4)NeuAc(1);AC=1965;", "dHex(2)Hex(2)HexNAc(6)Sulf(1)": "NT=dHex(2)Hex(2)HexNAc(6)Sulf(1);AC=1966;", "Hex(5)HexNAc(4)NeuAc(1)Ac(1)": "NT=Hex(5)HexNAc(4)NeuAc(1)Ac(1);AC=1967;", "Hex(3)HexNAc(3)NeuAc(3)": "NT=Hex(3)HexNAc(3)NeuAc(3);AC=1968;", "Hex(5)HexNAc(4)NeuAc(1)Ac(2)": "NT=Hex(5)HexNAc(4)NeuAc(1)Ac(2);AC=1969;", "Unknown:162": "NT=Unknown:162;AC=1970;", "Unknown:177": "NT=Unknown:177;AC=1971;", "Unknown:210": "NT=Unknown:210;AC=1972;", "Unknown:216": "NT=Unknown:216;AC=1973;", "Unknown:234": "NT=Unknown:234;AC=1974;", "Unknown:248": "NT=Unknown:248;AC=1975;", "Unknown:250": "NT=Unknown:250;AC=1976;", "Unknown:302": "NT=Unknown:302;AC=1977;", "Unknown:306": "NT=Unknown:306;AC=1978;", "Unknown:420": "NT=Unknown:420;AC=1979;", "Diethylphosphothione": "NT=Diethylphosphothione;AC=1986;", "Dimethylphosphothione": "NT=Dimethylphosphothione;AC=1987;", "monomethylphosphothione": "NT=monomethylphosphothione;AC=1989;", "CIGG": "NT=CIGG;AC=1990;", "GNLLFLACYCIGG": "NT=GNLLFLACYCIGG;AC=1991;", "serotonylation": "NT=serotonylation;AC=1992;", "TMPP-Ac:13C(9)": "NT=TMPP-Ac:13C(9);AC=1993;", "Xlink:DST[56]": "NT=Xlink:DST[56];AC=1999;", "Xlink:SDA": "NT=Xlink:SDA;AC=2000;", "ZQG": "NT=ZQG;AC=2001;", "Haloxon": "NT=Haloxon;AC=2006;", "Methamidophos-S": "NT=Methamidophos-S;AC=2007;", "Methamidophos-O": "NT=Methamidophos-O;AC=2008;", "Nitrene": "NT=Nitrene;AC=2014;", "shTMT": "NT=shTMT;AC=2015;", "TMTpro": "NT=TMTpro;AC=2016;", "TMTpro_zero": "NT=TMTpro_zero;AC=2017;", "Xlink:EDC": "NT=Xlink:EDC;AC=2018;", "Xlink:Disulfide": "NT=Xlink:Disulfide;AC=2020;", "Ser/Thr-KDO": "NT=Ser/Thr-KDO;AC=2022;", "Andro-H2O": "NT=Andro-H2O;AC=2025;", "Xlink:KQisopeptide": "NT=Xlink:KQisopeptide;AC=2026;", "His+O(2)": "NT=His+O(2);AC=2027;", "Hex(6)HexNAc(5)NeuAc(3)": "NT=Hex(6)HexNAc(5)NeuAc(3);AC=2028;", "Hex(7)HexNAc(6)": "NT=Hex(7)HexNAc(6);AC=2029;", "Met+O(2)": "NT=Met+O(2);AC=2033;", "Gly+O(2)": "NT=Gly+O(2);AC=2034;", "Pro+O(2)": "NT=Pro+O(2);AC=2035;", "Lys+O(2)": "NT=Lys+O(2);AC=2036;", "Glu+O(2)": "NT=Glu+O(2);AC=2037;", "LTX+Lophotoxin": "NT=LTX+Lophotoxin;AC=2039;", "MBS+peptide": "NT=MBS+peptide;AC=2040;", "3-hydroxybenzyl-phosphate": "NT=3-hydroxybenzyl-phosphate;AC=2041;", "phenyl-phosphate": "NT=phenyl-phosphate;AC=2042;", "RBS-ID_Uridine": "NT=RBS-ID_Uridine;AC=2044;", "shTMTpro": "NT=shTMTpro;AC=2050;", "Biotin:Aha-DADPS": "NT=Biotin:Aha-DADPS;AC=2052;", "Biotin:Aha-PC": "NT=Biotin:Aha-PC;AC=2053;", "pRBS-ID_4-thiouridine": "NT=pRBS-ID_4-thiouridine;AC=2054;", "pRBS-ID_6-thioguanosine": "NT=pRBS-ID_6-thioguanosine;AC=2055;", "6C-CysPAT": "NT=6C-CysPAT;AC=2057;", "Xlink:DSPP[210]": "NT=Xlink:DSPP[210];AC=2058;", "Xlink:DSPP[228]": "NT=Xlink:DSPP[228];AC=2059;", "Xlink:DSPP[331]": "NT=Xlink:DSPP[331];AC=2060;", "Xlink:DSPP[226]": "NT=Xlink:DSPP[226];AC=2061;", "DBIA": "NT=DBIA;AC=2062;", "Mono_N\u03b3-propargyl-L-Gln_desthiobiotin": "NT=Mono_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2067;", "Di_L-Glu_N\u03b3-propargyl-L-Gln_desthiobiotin": "NT=Di_L-Glu_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2068;", "Di_L-Gln_N\u03b3-propargyl-L-Gln_desthiobiotin": "NT=Di_L-Gln_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2069;", "L-Gln": "NT=L-Gln;AC=2070;", "Glyceroyl": "NT=Glyceroyl;AC=2072;", "N6pAMP": "NT=N6pAMP;AC=2073;", "DabMal": "NT=DabMal;AC=2074;", "NBF": "NT=NBF;AC=2079;", "DCP": "NT=DCP;AC=2080;", "Ethynylation": "NT=Ethynylation;AC=2081;", "Acetylation": "NT=Acetyl;AC=1;", "Amidation": "NT=Amidated;AC=2;", "Biotinylation": "NT=Biotin;AC=3;", "Iodoacetamide derivative": "NT=Carbamidomethyl;AC=4;", "Carbamylation": "NT=Carbamyl;AC=5;", "Iodoacetic acid derivative": "NT=Carboxymethyl;AC=6;", "Deamidation": "NT=Deamidated;AC=7;", "Gygi ICAT(TM) d0": "NT=ICAT-G;AC=8;", "Gygi ICAT(TM) d8": "NT=ICAT-G:2H(8);AC=9;", "Homoserine": "NT=Met->Hse;AC=10;", "Homoserine lactone": "NT=Met->Hsl;AC=11;", "Applied Biosystems original ICAT(TM) d8": "NT=ICAT-D:2H(8);AC=12;", "Applied Biosystems original ICAT(TM) d0": "NT=ICAT-D;AC=13;", "N-isopropylcarboxamidomethyl": "NT=NIPCAM;AC=17;", "Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine": "NT=PEO-Iodoacetyl-LC-Biotin;AC=20;", "Phosphorylation": "NT=Phospho;AC=21;", "Dehydration": "NT=Dehydrated;AC=23;", "Acrylamide adduct": "NT=Propionamide;AC=24;", "pyridylacetyl": "NT=Pyridylacetyl;AC=25;", "S-carbamoylmethylcysteine cyclization (N-terminus)": "NT=Pyro-carbamidomethyl;AC=26;", "Pyro-glu from E": "NT=Glu->pyro-Glu;AC=27;", "Pyro-glu from Q": "NT=Gln->pyro-Glu;AC=28;", "N-Succinimidyl-2-morpholine acetate": "NT=SMA;AC=29;", "Sodium adduct": "NT=Cation:Na;AC=30;", "S-pyridylethylation": "NT=Pyridylethyl;AC=31;", "Methylation": "NT=Methyl;AC=34;", "Oxidation or Hydroxylation": "NT=Oxidation;AC=35;", "di-Methylation": "NT=Dimethyl;AC=36;", "tri-Methylation": "NT=Trimethyl;AC=37;", "Beta-methylthiolation": "NT=Methylthio;AC=39;", "O-Sulfonation": "NT=Sulfo;AC=40;", "Hexose": "NT=Hex;AC=41;", "N-Acetylhexosamine": "NT=HexNAc;AC=43;", "Farnesylation": "NT=Farnesyl;AC=44;", "Myristoylation": "NT=Myristoyl;AC=45;", "Pyridoxal phosphate": "NT=PyridoxalPhosphate;AC=46;", "Palmitoylation": "NT=Palmitoyl;AC=47;", "Geranyl-geranyl": "NT=GeranylGeranyl;AC=48;", "Flavin adenine dinucleotide": "NT=FAD;AC=50;", "N-acyl diglyceride cysteine": "NT=Tripalmitate;AC=51;", "Guanidination": "NT=Guanidinyl;AC=52;", "4-hydroxynonenal (HNE)": "NT=HNE;AC=53;", "hexuronic acid": "NT=Glucuronyl;AC=54;", "glutathione disulfide": "NT=Glutathione;AC=55;", "Acetate labeling reagent (N-term & K) (heavy form, +3amu)": "NT=Acetyl:2H(3);AC=56;", "Propionate labeling reagent light form (N-term & K)": "NT=Propionyl;AC=58;", "Propionate labeling reagent heavy form (+3amu), N-term & K": "NT=Propionyl:13C(3);AC=59;", "Quaternary amine labeling reagent light form (N-term & K)": "NT=GIST-Quat;AC=60;", "Quaternary amine labeling reagent heavy (+3amu) form, N-term & K": "NT=GIST-Quat:2H(3);AC=61;", "Quaternary amine labeling reagent heavy form (+6amu), N-term & K": "NT=GIST-Quat:2H(6);AC=62;", "Quaternary amine labeling reagent heavy form (+9amu), N-term & K": "NT=GIST-Quat:2H(9);AC=63;", "Succinic anhydride labeling reagent light form (N-term & K)": "NT=Succinyl;AC=64;", "Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K": "NT=Succinyl:2H(4);AC=65;", "Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K": "NT=Succinyl:13C(4);AC=66;", "Iminobiotinylation": "NT=Iminobiotin;AC=89;", "ESP-Tag light d0": "NT=ESP;AC=90;", "ESP-Tag heavy d10": "NT=ESP:2H(10);AC=91;", "IMID d0": "NT=IMID;AC=94;", "IMID d4": "NT=IMID:2H(4);AC=95;", "Acrylamide d3": "NT=Propionamide:2H(3);AC=97;", "Applied Biosystems cleavable ICAT(TM) light": "NT=ICAT-C;AC=105;", "Applied Biosystems cleavable ICAT(TM) heavy": "NT=ICAT-C:13C(9);AC=106;", "Addition of N-formyl met": "NT=FormylMet;AC=107;", "N-ethylmaleimide on cysteines": "NT=Nethylmaleimide;AC=108;", "Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced": "NT=OxLysBiotinRed;AC=112;", "Oxidized lysine biotinylated with biotin-LC-hydrazide": "NT=OxLysBiotin;AC=113;", "Oxidized proline biotinylated with biotin-LC-hydrazide, reduced": "NT=OxProBiotinRed;AC=114;", "Oxidized Proline biotinylated with biotin-LC-hydrazide": "NT=OxProBiotin;AC=115;", "Oxidized arginine biotinylated with biotin-LC-hydrazide": "NT=OxArgBiotin;AC=116;", "Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced": "NT=OxArgBiotinRed;AC=117;", "EDT-iodo-PEO-biotin": "NT=EDT-iodoacetyl-PEO-biotin;AC=118;", "Thio Ether Formation - BTP Adduct": "NT=IBTP;AC=119;", "ubiquitinylation residue": "NT=GG;AC=121;", "Formylation": "NT=Formyl;AC=122;", "N-iodoacetyl, p-chlorobenzyl-12C6-glucamine": "NT=ICAT-H;AC=123;", "N-iodoacetyl, p-chlorobenzyl-13C6-glucamine": "NT=ICAT-H:13C(6);AC=124;", "Cleaved and reduced DSP/DTSSP crosslinker": "NT=Xlink:DTSSP[88];AC=126;", "fluorination": "NT=Fluoro;AC=127;", "5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR)": "NT=Fluorescein;AC=128;", "Iodination": "NT=Iodo;AC=129;", "di-Iodination": "NT=Diiodo;AC=130;", "tri-Iodination": "NT=Triiodo;AC=131;", "(cis-delta 5)-tetradecaenoyl": "NT=Myristoleyl;AC=134;", "(cis,cis-delta 5, delta 8)-tetradecadienoyl": "NT=Myristoyl+Delta:H(-4);AC=135;", "labeling reagent light form (N-term & K)": "NT=Benzoyl;AC=136;", "M5/Man5": "NT=Hex(5)HexNAc(2);AC=137;", "5-dimethylaminonaphthalene-1-sulfonyl": "NT=Dansyl;AC=139;", "ISD a-series (C-Term)": "NT=a-type-ion;AC=140;", "amidination of lysines or N-terminal amines with methyl acetimidate": "NT=Amidine;AC=141;", "HexNAc1dHex1": "NT=HexNAc(1)dHex(1);AC=142;", "HexNAc2": "NT=HexNAc(2);AC=143;", "Hex3": "NT=Hex(3);AC=144;", "HexNAc1dHex2": "NT=HexNAc(1)dHex(2);AC=145;", "Hex1HexNAc1dHex1": "NT=Hex(1)HexNAc(1)dHex(1);AC=146;", "HexNAc2dHex1": "NT=HexNAc(2)dHex(1);AC=147;", "Hex1HexNAc2": "NT=Hex(1)HexNAc(2);AC=148;", "Hex1HexNAc1NeuAc1": "NT=Hex(1)HexNAc(1)NeuAc(1);AC=149;", "HexNAc2dHex2": "NT=HexNAc(2)dHex(2);AC=150;", "Hex1HexNAc2Pent1": "NT=Hex(1)HexNAc(2)Pent(1);AC=151;", "Hex1HexNAc2dHex1": "NT=Hex(1)HexNAc(2)dHex(1);AC=152;", "Hex2HexNAc2": "NT=Hex(2)HexNAc(2);AC=153;", "Hex3HexNAc1Pent1": "NT=Hex(3)HexNAc(1)Pent(1);AC=154;", "Hex1HexNAc2dHex1Pent1": "NT=Hex(1)HexNAc(2)dHex(1)Pent(1);AC=155;", "Hex1HexNAc2dHex2": "NT=Hex(1)HexNAc(2)dHex(2);AC=156;", "Hex2HexNAc2Pent1": "NT=Hex(2)HexNAc(2)Pent(1);AC=157;", "Hex2HexNAc2dHex1": "NT=Hex(2)HexNAc(2)dHex(1);AC=158;", "M3/Man3": "NT=Hex(3)HexNAc(2);AC=159;", "Hex HexNAc NeuAc(2) ---OR--- Hex HexNAc(3) HexA": "NT=Hex(1)HexNAc(1)NeuAc(2);AC=160;", "Hex(3) HexNAc(2) Phos": "NT=Hex(3)HexNAc(2)Phos(1);AC=161;", "Selenium replaces sulfur": "NT=Delta:S(-1)Se(1);AC=162;", "glycosylated asparagine 18O labeling": "NT=Delta:H(-1)N(-1)18O(1);AC=170;", "Shimadzu NBS-13C": "NT=NBS:13C(6);AC=171;", "Shimadzu NBS-12C": "NT=NBS;AC=172;", "Michael addition of BHT quinone methide to Cysteine and Lysine": "NT=BHT;AC=176;", "phosphorylation to amine thiol": "NT=DAET;AC=178;", "13C(9) Silac label": "NT=Label:13C(9);AC=184;", "C13 label (Phosphotyrosine)": "NT=Label:13C(9)+Phospho;AC=185;", "Hydroxyphenylglyoxal arginine": "NT=HPG;AC=186;", "bis(hydroxphenylglyoxal) arginine": "NT=2HPG;AC=187;", "13C(6) Silac label": "NT=Label:13C(6);AC=188;", "O18 label at both C-terminal oxygens": "NT=Label:18O(2);AC=193;", "6-aminoquinolyl-N-hydroxysuccinimidyl carbamate": "NT=AccQTag;AC=194;", "APTA-d0": "NT=QAT;AC=195;", "APTA d3": "NT=QAT:2H(3);AC=196;", "EAPTA d0": "NT=EQAT;AC=197;", "EAPTA d5": "NT=EQAT:2H(5);AC=198;", "DiMethyl-CHD2": "NT=Dimethyl:2H(4);AC=199;", "EDT": "NT=Ethanedithiol;AC=200;", "Acrolein addition +94": "NT=Delta:H(6)C(6)O(1);AC=205;", "Acrolein addition +56": "NT=Delta:H(4)C(3)O(1);AC=206;", "Acrolein addition +38": "NT=Delta:H(2)C(3);AC=207;", "Acrolein addition +76": "NT=Delta:H(4)C(6);AC=208;", "Acrolein addition +112": "NT=Delta:H(8)C(6)O(2);AC=209;", "N-ethyl iodoacetamide-d0": "NT=NEIAA;AC=211;", "N-ethyl iodoacetamide-d5": "NT=NEIAA:2H(5);AC=212;", "ADP Ribose addition": "NT=ADP-Ribosyl;AC=213;", "Representative mass and accurate mass for 116 & 117": "NT=iTRAQ4plex;AC=214;", "Light IDBEST tag for quantitation": "NT=IGBP;AC=243;", "Acetaldehyde +26": "NT=Delta:H(2)C(2);AC=254;", "Acetaldehyde +28": "NT=Delta:H(4)C(2);AC=255;", "Propionaldehyde +40": "NT=Delta:H(4)C(3);AC=256;", "O18 Labeling": "NT=Label:18O(1);AC=258;", "13C(6) 15N(2) Silac label": "NT=Label:13C(6)15N(2);AC=259;", "Thiophosphorylation": "NT=Thiophospho;AC=260;", "4-sulfophenyl isothiocyanate": "NT=SPITC;AC=261;", "Trideuteration": "NT=Label:2H(3);AC=262;", "phosphorylation to pyridyl thiol": "NT=PET;AC=264;", "13C(6) 15N(4) Silac label": "NT=Label:13C(6)15N(4);AC=267;", "13C(5) 15N(1) Silac label": "NT=Label:13C(5)15N(1);AC=268;", "13C(9) 15N(1) Silac label": "NT=Label:13C(9)15N(1);AC=269;", "nucleophilic addtion to cytopiloyne": "NT=Cytopiloyne;AC=270;", "nucleophilic addition to cytopiloyne+H2O": "NT=Cytopiloyne+water;AC=271;", "sulfonation of N-terminus": "NT=CAF;AC=272;", "nitrosylation": "NT=Nitrosyl;AC=275;", "Aminoethylbenzenesulfonylation": "NT=AEBS;AC=276;", "Ethanolation": "NT=Ethanolyl;AC=278;", "Ethylation": "NT=Ethyl;AC=280;", "Cysteine modified Coenzyme A": "NT=CoenzymeA;AC=281;", "Deuterium Methylation of Lysine": "NT=Methyl:2H(2);AC=284;", "Light Sulfanilic Acid (SA) C12": "NT=SulfanilicAcid;AC=285;", "Heavy Sulfanilic Acid (SA) C13": "NT=SulfanilicAcid:13C(6);AC=286;", "Tryptophan oxidation to oxolactone": "NT=Trp->Oxolactone;AC=288;", "Biotin polyethyleneoxide amine": "NT=Biotin-PEO-Amine;AC=289;", "Pierce EZ-Link Biotin-HPDP": "NT=Biotin-HPDP;AC=290;", "Mercury Mercaptan": "NT=Delta:Hg(1);AC=291;", "(Iodo)-uracil MP": "NT=IodoU-AMP;AC=292;", "3-(carbamidomethylthio)propanoyl": "NT=CAMthiopropanoyl;AC=293;", "biotinoyl-iodoacetyl-ethylenediamine": "NT=IED-Biotin;AC=294;", "Fucose": "NT=dHex;AC=295;", "deuterated methyl ester": "NT=Methyl:2H(3);AC=298;", "Carboxylation": "NT=Carboxy;AC=299;", "Monobromobimane derivative": "NT=Bromobimane;AC=301;", "Menadione quinone derivative": "NT=Menadione;AC=302;", "Cysteine mercaptoethanol": "NT=DeStreak;AC=303;", "FA2/G0F": "NT=dHex(1)Hex(3)HexNAc(4);AC=305;", "FA2G1/G1F": "NT=dHex(1)Hex(4)HexNAc(4);AC=307;", "FA2G2/G2F": "NT=dHex(1)Hex(5)HexNAc(4);AC=308;", "A2/G0": "NT=Hex(3)HexNAc(4);AC=309;", "A2G1/G1": "NT=Hex(4)HexNAc(4);AC=310;", "A2G2/G2": "NT=Hex(5)HexNAc(4);AC=311;", "Cysteinylation": "NT=Cysteinyl;AC=312;", "Loss of Lysine": "NT=Lys-loss;AC=313;", "2,5-dimethypyrrole": "NT=DimethylpyrroleAdduct;AC=316;", "MDA adduct +62": "NT=Delta:H(2)C(5);AC=318;", "MDA adduct +54": "NT=Delta:H(2)C(3)O(1);AC=319;", "Nethylmaleimidehydrolysis": "NT=Nethylmaleimide+water;AC=320;", "bis-((N-iodoacetyl)piperazinyl)sulfonerhodamine": "NT=Xlink:B10621;AC=323;", "Cleaved and reduced DTBP crosslinker": "NT=Xlink:DTBP[87];AC=324;", "10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide": "NT=FP-Biotin;AC=325;", "S-Ethylcystine from Serine": "NT=Delta:H(4)C(2)O(-1)S(1);AC=327;", "monomethylation": "NT=Methyl:2H(3)13C(1);AC=329;", "dimethylation": "NT=Dimethyl:2H(6)13C(2);AC=330;", "thiophosphate labeled with biotin-HPDP": "NT=Thiophos-S-S-biotin;AC=332;", "6-N-biotinylaminohexyl isopropyl phosphate": "NT=Can-FP-biotin;AC=333;", "reduced 4-Hydroxynonenal": "NT=HNE+Delta:H(2);AC=335;", "Michael addition with methylamine": "NT=Methylamine;AC=337;", "bromination": "NT=Bromo;AC=340;", "Tyrosine oxidation to 2-aminotyrosine": "NT=Amino;AC=342;", "oxidized Arginine biotinylated with biotin hydrazide": "NT=Argbiotinhydrazide;AC=343;", "Arginine oxidation to glutamic semialdehyde": "NT=Arg->GluSA;AC=344;", "cysteine oxidation to cysteic acid": "NT=Trioxidation;AC=345;", "His->Asn substitution": "NT=His->Asn;AC=348;", "His->Asp substitution": "NT=His->Asp;AC=349;", "tryptophan oxidation to hydroxykynurenin": "NT=Trp->Hydroxykynurenin;AC=350;", "tryptophan oxidation to kynurenin": "NT=Trp->Kynurenin;AC=351;", "Lysine oxidation to aminoadipic semialdehyde": "NT=Lys->Allysine;AC=352;", "oxidized Lysine biotinylated with biotin hydrazide": "NT=Lysbiotinhydrazide;AC=353;", "Oxidation to nitro": "NT=Nitro;AC=354;", "oxidized proline biotinylated with biotin hydrazide": "NT=probiotinhydrazide;AC=357;", "proline oxidation to pyroglutamic acid": "NT=Pro->pyro-Glu;AC=359;", "Proline oxidation to pyrrolidinone": "NT=Pro->Pyrrolidinone;AC=360;", "oxidized Threonine biotinylated with biotin hydrazide": "NT=Thrbiotinhydrazide;AC=361;", "O-Diisopropylphosphorylation": "NT=Diisopropylphosphate;AC=362;", "O-Isopropylphosphorylation": "NT=Isopropylphospho;AC=363;", "Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form": "NT=ICPL:13C(6);AC=364;", "Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form": "NT=ICPL;AC=365;", "Deamidation in presence of O18": "NT=Deamidated:18O(1);AC=366;", "Dehydroalanine (from Cysteine)": "NT=Cys->Dha;AC=368;", "Pyrrolidone from Proline": "NT=Pro->Pyrrolidone;AC=369;", "Michael addition of hydroxymethylvinyl ketone to cysteine": "NT=HMVK;AC=371;", "Ornithine from Arginine": "NT=Arg->Orn;AC=372;", "Half of a disulfide bridge": "NT=Dehydro;AC=374;", "hydroxyfarnesyl": "NT=Hydroxyfarnesyl;AC=376;", "diacylglycerol": "NT=Diacylglycerol;AC=377;", "carboxyethyl": "NT=Carboxyethyl;AC=378;", "hypusine": "NT=Hypusine;AC=379;", "retinal": "NT=Retinylidene;AC=380;", "alpha-amino adipic acid": "NT=Lys->AminoadipicAcid;AC=381;", "pyruvic acid from N-term cys": "NT=Cys->PyruvicAcid;AC=382;", "Loss of ammonia": "NT=Ammonia-loss;AC=385;", "phycocyanobilin": "NT=Phycocyanobilin;AC=387;", "phycoerythrobilin": "NT=Phycoerythrobilin;AC=388;", "phytochromobilin": "NT=Phytochromobilin;AC=389;", "heme": "NT=Heme;AC=390;", "molybdopterin": "NT=Molybdopterin;AC=391;", "quinone": "NT=Quinone;AC=392;", "glucosylgalactosyl hydroxylysine": "NT=Glucosylgalactosyl;AC=393;", "glycosylphosphatidylinositol": "NT=GPIanchor;AC=394;", "phosphoribosyl dephospho-coenzyme A": "NT=PhosphoribosyldephosphoCoA;AC=395;", "glycerylphosphorylethanolamine": "NT=GlycerylPE;AC=396;", "triiodo": "NT=Triiodothyronine;AC=397;", "tetraiodo": "NT=Thyroxine;AC=398;", "Dehydroalanine (from Tyrosine)": "NT=Tyr->Dha;AC=400;", "2-amino-3-oxo-butanoic_acid": "NT=Didehydro;AC=401;", "oxoalanine": "NT=Cys->Oxoalanine;AC=402;", "lactic acid from N-term Ser": "NT=Ser->LacticAcid;AC=403;", "AMP": "NT=Phosphoadenosine;AC=405;", "hydroxycinnamyl": "NT=Hydroxycinnamyl;AC=407;", "glycosyl-L-hydroxyproline": "NT=Glycosyl;AC=408;", "flavin mononucleotide": "NT=FMNH;AC=409;", "S-diphytanylglycerol diether": "NT=Archaeol;AC=410;", "phenyl isocyanate": "NT=Phenylisocyanate;AC=411;", "d5-phenyl isocyanate": "NT=Phenylisocyanate:2H(5);AC=412;", "phospho-guanosine": "NT=Phosphoguanosine;AC=413;", "hydroxymethyl": "NT=Hydroxymethyl;AC=414;", "L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide)": "NT=MolybdopterinGD+Delta:S(-1)Se(1);AC=415;", "dipyrrolylmethanemethyl": "NT=Dipyrrolylmethanemethyl;AC=416;", "uridine phosphodiester": "NT=PhosphoUridine;AC=417;", "glycerophospho": "NT=Glycerophospho;AC=419;", "thiocarboxylic acid": "NT=Carboxy->Thiocarboxy;AC=420;", "persulfide": "NT=Sulfide;AC=421;", "N-pyruvic acid 2-iminyl": "NT=PyruvicAcidIminyl;AC=422;", "selenyl": "NT=Delta:Se(1);AC=423;", "molybdenum bis(molybdopterin guanine dinucleotide)": "NT=MolybdopterinGD;AC=424;", "dihydroxy": "NT=Dioxidation;AC=425;", "octanoyl": "NT=Octanoyl;AC=426;", "N-acetylglucosamine-1-phosphoryl": "NT=PhosphoHexNAc;AC=428;", "phosphoglycosyl-D-mannose-1-phosphoryl": "NT=PhosphoHex;AC=429;", "palmitoleyl": "NT=Palmitoleyl;AC=431;", "cholesterol ester": "NT=Cholesterol;AC=432;", "3,4-didehydroretinylidene": "NT=Didehydroretinylidene;AC=433;", "cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester": "NT=CHDH;AC=434;", "4-methyl-delta-1-pyrroline-5-carboxyl": "NT=Methylpyrroline;AC=435;", "hydroxyheme": "NT=Hydroxyheme;AC=436;", "(3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine": "NT=MicrocinC7;AC=437;", "cyano": "NT=Cyano;AC=438;", "hydrogenase diiron subcluster": "NT=Diironsubcluster;AC=439;", "amidino": "NT=Amidino;AC=440;", "O3-(riboflavin phosphoryl)": "NT=FMN;AC=442;", "S-(4a-FMN)": "NT=FMNC;AC=443;", "copper sulfido molybdopterin cytosine dinuncleotide": "NT=CuSMo;AC=444;", "5-hydroxy-N6,N6,N6-trimethyl": "NT=Hydroxytrimethyl;AC=445;", "reduction": "NT=Deoxy;AC=447;", "microcin E492 siderophore ester from serine": "NT=Microcin;AC=448;", "lipid": "NT=Decanoyl;AC=449;", "monoglutamyl": "NT=Glu;AC=450;", "diglutamyl": "NT=GluGlu;AC=451;", "triglutamyl": "NT=GluGluGlu;AC=452;", "tetraglutamyl": "NT=GluGluGluGlu;AC=453;", "Hexosamine": "NT=HexN;AC=454;", "Free monolink of DMP crosslinker": "NT=Xlink:DMP[154];AC=455;", "Dimethyl pimelimidate crosslink": "NT=Xlink:DMP;AC=456;", "naphthalene-2,3-dicarboxaldehyde": "NT=NDA;AC=457;", "4-sulfophenyl isothiocyanate (Heavy C13)": "NT=SPITC:13C(6);AC=464;", "aminoethylcysteine": "NT=AEC-MAEC;AC=472;", "4-trimethyllammoniumbutyryl-": "NT=TMAB;AC=476;", "d9-4-trimethyllammoniumbutyryl-": "NT=TMAB:2H(9);AC=477;", "fluorescein-5-thiosemicarbazide": "NT=FTC;AC=478;", "4,4,5,5-D4 Lysine": "NT=Label:2H(4);AC=481;", "Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines": "NT=DHP;AC=488;", "Heptose": "NT=Hep;AC=490;", "Bisphenol A diglycidyl ether derivative": "NT=BADGE;AC=493;", "Cy3 CyDye DIGE Fluor saturation dye": "NT=CyDye-Cy3;AC=494;", "Cy5 CyDye DIGE Fluor saturation dye": "NT=CyDye-Cy5;AC=495;", "Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K": "NT=BHTOH;AC=498;", "Heavy IDBEST tag for quantitation": "NT=IGBP:13C(2);AC=499;", "Nmethylmaleimidehydrolysis": "NT=Nmethylmaleimide+water;AC=500;", "3-methyl-2-pyridyl isocyanate": "NT=PyMIC;AC=501;", "Levuglandinyl - lysine lactam adduct": "NT=LG-lactam-K;AC=503;", "Levuglandinyl - lysine hydroxylactam adduct": "NT=LG-Hlactam-K;AC=504;", "Levuglandinyl - arginine lactam adduct": "NT=LG-lactam-R;AC=505;", "Levuglandinyl - arginine hydroxylactam adduct": "NT=LG-Hlactam-R;AC=506;", "DiMethyl-C13HD2": "NT=Dimethyl:2H(4)13C(2);AC=510;", "Lactosylation": "NT=Hex(2);AC=512;", "[3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium": "NT=C8-QAT;AC=513;", "propyl-1,2-dideoxy-2\\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\\'-thiazoline": "NT=PropylNAGthiazoline;AC=514;", "fluorescein-5-maleimide": "NT=FNEM;AC=515;", "Diethylation, analogous to Dimethylation": "NT=Diethyl;AC=518;", "4,4\\'-dianilino-1,1\\'-binaphthyl-5,5\\'-disulfonic acid": "NT=BisANS;AC=519;", "Piperidination": "NT=Piperidine;AC=520;", "Maleimide-Biotin": "NT=Maleimide-PEO2-Biotin;AC=522;", "Biot_LC_LC": "NT=Sulfo-NHS-LC-LC-Biotin;AC=523;", "Prompt loss of side chain from oxidised Met": "NT=Dethiomethyl;AC=526;", "Deamidation followed by a methylation": "NT=Methyl+Deamidated;AC=528;", "Dimethylation of proline residue": "NT=Delta:H(5)C(2);AC=529;", "Replacement of proton by potassium": "NT=Cation:K;AC=530;", "Replacement of proton by copper": "NT=Cation:Cu[I];AC=531;", "Accurate mass for 114": "NT=iTRAQ4plex114;AC=532;", "Accurate mass for 115": "NT=iTRAQ4plex115;AC=533;", "Ubiquitination": "NT=LRGG;AC=535;", "was 15dB-biotin": "NT=Biotin:Cayman-10141;AC=538;", "was PGA1-biotin": "NT=Biotin:Cayman-10013;AC=539;", "Ala->Ser substitution": "NT=Ala->Ser;AC=540;", "Ala->Thr substitution": "NT=Ala->Thr;AC=541;", "Ala->Asp substitution": "NT=Ala->Asp;AC=542;", "Ala->Pro substitution": "NT=Ala->Pro;AC=543;", "Ala->Gly substitution": "NT=Ala->Gly;AC=544;", "Ala->Glu substitution": "NT=Ala->Glu;AC=545;", "Ala->Val substitution": "NT=Ala->Val;AC=546;", "Cys->Phe substitution": "NT=Cys->Phe;AC=547;", "Cys->Ser substitution": "NT=Cys->Ser;AC=548;", "Cys->Trp substitution": "NT=Cys->Trp;AC=549;", "Cys->Tyr substitution": "NT=Cys->Tyr;AC=550;", "Cys->Arg substitution": "NT=Cys->Arg;AC=551;", "Cys->Gly substitution": "NT=Cys->Gly;AC=552;", "Asp->Ala substitution": "NT=Asp->Ala;AC=553;", "Asp->His substitution": "NT=Asp->His;AC=554;", "Asp->Asn substitution": "NT=Asp->Asn;AC=555;", "Asp->Gly substitution": "NT=Asp->Gly;AC=556;", "Asp->Tyr substitution": "NT=Asp->Tyr;AC=557;", "Asp->Glu substitution": "NT=Asp->Glu;AC=558;", "Asp->Val substitution": "NT=Asp->Val;AC=559;", "Glu->Ala substitution": "NT=Glu->Ala;AC=560;", "Glu->Gln substitution": "NT=Glu->Gln;AC=561;", "Glu->Asp substitution": "NT=Glu->Asp;AC=562;", "Glu->Lys substitution": "NT=Glu->Lys;AC=563;", "Glu->Gly substitution": "NT=Glu->Gly;AC=564;", "Glu->Val substitution": "NT=Glu->Val;AC=565;", "Phe->Ser substitution": "NT=Phe->Ser;AC=566;", "Phe->Cys substitution": "NT=Phe->Cys;AC=567;", "Phe->Leu/Ile substitution": "NT=Phe->Xle;AC=568;", "Phe->Tyr substitution": "NT=Phe->Tyr;AC=569;", "Phe->Val substitution": "NT=Phe->Val;AC=570;", "Gly->Ala substitution": "NT=Gly->Ala;AC=571;", "Gly->Ser substitution": "NT=Gly->Ser;AC=572;", "Gly->Trp substitution": "NT=Gly->Trp;AC=573;", "Gly->Glu substitution": "NT=Gly->Glu;AC=574;", "Gly->Val substitution": "NT=Gly->Val;AC=575;", "Gly->Asp substitution": "NT=Gly->Asp;AC=576;", "Gly->Cys substitution": "NT=Gly->Cys;AC=577;", "Gly->Arg substitution": "NT=Gly->Arg;AC=578;", "His->Pro substitution": "NT=His->Pro;AC=580;", "His->Tyr substitution": "NT=His->Tyr;AC=581;", "His->Gln substitution": "NT=His->Gln;AC=582;", "His->Arg substitution": "NT=His->Arg;AC=584;", "His->Leu/Ile substitution": "NT=His->Xle;AC=585;", "Leu/Ile->Thr substitution": "NT=Xle->Thr;AC=588;", "Leu/Ile->Asn substitution": "NT=Xle->Asn;AC=589;", "Leu/Ile->Lys substitution": "NT=Xle->Lys;AC=590;", "Lys->Thr substitution": "NT=Lys->Thr;AC=594;", "Lys->Asn substitution": "NT=Lys->Asn;AC=595;", "Lys->Glu substitution": "NT=Lys->Glu;AC=596;", "Lys->Gln substitution": "NT=Lys->Gln;AC=597;", "Lys->Met substitution": "NT=Lys->Met;AC=598;", "Lys->Arg substitution": "NT=Lys->Arg;AC=599;", "Lys->Leu/Ile substitution": "NT=Lys->Xle;AC=600;", "Leu/Ile->Ser substitution": "NT=Xle->Ser;AC=601;", "Leu/Ile->Phe substitution": "NT=Xle->Phe;AC=602;", "Leu/Ile->Trp substitution": "NT=Xle->Trp;AC=603;", "Leu/Ile->Pro substitution": "NT=Xle->Pro;AC=604;", "Leu/Ile->Val substitution": "NT=Xle->Val;AC=605;", "Leu/Ile->His substitution": "NT=Xle->His;AC=606;", "Leu/Ile->Gln substitution": "NT=Xle->Gln;AC=607;", "Leu/Ile->Met substitution": "NT=Xle->Met;AC=608;", "Leu/Ile->Arg substitution": "NT=Xle->Arg;AC=609;", "Met->Thr substitution": "NT=Met->Thr;AC=610;", "Met->Arg substitution": "NT=Met->Arg;AC=611;", "Met->Lys substitution": "NT=Met->Lys;AC=613;", "Met->Leu/Ile substitution": "NT=Met->Xle;AC=614;", "Met->Val substitution": "NT=Met->Val;AC=615;", "Asn->Ser substitution": "NT=Asn->Ser;AC=616;", "Asn->Thr substitution": "NT=Asn->Thr;AC=617;", "Asn->Lys substitution": "NT=Asn->Lys;AC=618;", "Asn->Tyr substitution": "NT=Asn->Tyr;AC=619;", "Asn->His substitution": "NT=Asn->His;AC=620;", "Asn->Asp substitution": "NT=Asn->Asp;AC=621;", "Asn->Leu/Ile substitution": "NT=Asn->Xle;AC=622;", "Pro->Ser substitution": "NT=Pro->Ser;AC=623;", "Pro->Ala substitution": "NT=Pro->Ala;AC=624;", "Pro->His substitution": "NT=Pro->His;AC=625;", "Pro->Gln substitution": "NT=Pro->Gln;AC=626;", "Pro->Thr substitution": "NT=Pro->Thr;AC=627;", "Pro->Arg substitution": "NT=Pro->Arg;AC=628;", "Pro->Leu/Ile substitution": "NT=Pro->Xle;AC=629;", "Gln->Pro substitution": "NT=Gln->Pro;AC=630;", "Gln->Lys substitution": "NT=Gln->Lys;AC=631;", "Gln->Glu substitution": "NT=Gln->Glu;AC=632;", "Gln->His substitution": "NT=Gln->His;AC=633;", "Gln->Arg substitution": "NT=Gln->Arg;AC=634;", "Gln->Leu/Ile substitution": "NT=Gln->Xle;AC=635;", "Arg->Ser substitution": "NT=Arg->Ser;AC=636;", "Arg->Trp substitution": "NT=Arg->Trp;AC=637;", "Arg->Thr substitution": "NT=Arg->Thr;AC=638;", "Arg->Pro substitution": "NT=Arg->Pro;AC=639;", "Arg->Lys substitution": "NT=Arg->Lys;AC=640;", "Arg->His substitution": "NT=Arg->His;AC=641;", "Arg->Gln substitution": "NT=Arg->Gln;AC=642;", "Arg->Met substitution": "NT=Arg->Met;AC=643;", "Arg->Cys substitution": "NT=Arg->Cys;AC=644;", "Arg->Leu/Ile substitution": "NT=Arg->Xle;AC=645;", "Arg->Gly substitution": "NT=Arg->Gly;AC=646;", "Ser->Phe substitution": "NT=Ser->Phe;AC=647;", "Ser->Ala substitution": "NT=Ser->Ala;AC=648;", "Ser->Trp substitution": "NT=Ser->Trp;AC=649;", "Ser->Thr substitution": "NT=Ser->Thr;AC=650;", "Ser->Asn substitution": "NT=Ser->Asn;AC=651;", "Ser->Pro substitution": "NT=Ser->Pro;AC=652;", "Ser->Tyr substitution": "NT=Ser->Tyr;AC=653;", "Ser->Cys substitution": "NT=Ser->Cys;AC=654;", "Ser->Arg substitution": "NT=Ser->Arg;AC=655;", "Ser->Leu/Ile substitution": "NT=Ser->Xle;AC=656;", "Ser->Gly substitution": "NT=Ser->Gly;AC=657;", "Thr->Ser substitution": "NT=Thr->Ser;AC=658;", "Thr->Ala substitution": "NT=Thr->Ala;AC=659;", "Thr->Asn substitution": "NT=Thr->Asn;AC=660;", "Thr->Lys substitution": "NT=Thr->Lys;AC=661;", "Thr->Pro substitution": "NT=Thr->Pro;AC=662;", "Thr->Met substitution": "NT=Thr->Met;AC=663;", "Thr->Leu/Ile substitution": "NT=Thr->Xle;AC=664;", "Thr->Arg substitution": "NT=Thr->Arg;AC=665;", "Val->Phe substitution": "NT=Val->Phe;AC=666;", "Val->Ala substitution": "NT=Val->Ala;AC=667;", "Val->Glu substitution": "NT=Val->Glu;AC=668;", "Val->Met substitution": "NT=Val->Met;AC=669;", "Val->Asp substitution": "NT=Val->Asp;AC=670;", "Val->Leu/Ile substitution": "NT=Val->Xle;AC=671;", "Val->Gly substitution": "NT=Val->Gly;AC=672;", "Trp->Ser substitution": "NT=Trp->Ser;AC=673;", "Trp->Cys substitution": "NT=Trp->Cys;AC=674;", "Trp->Arg substitution": "NT=Trp->Arg;AC=675;", "Trp->Gly substitution": "NT=Trp->Gly;AC=676;", "Trp->Leu/Ile substitution": "NT=Trp->Xle;AC=677;", "Tyr->Phe substitution": "NT=Tyr->Phe;AC=678;", "Tyr->Ser substitution": "NT=Tyr->Ser;AC=679;", "Tyr->Asn substitution": "NT=Tyr->Asn;AC=680;", "Tyr->His substitution": "NT=Tyr->His;AC=681;", "Tyr->Asp substitution": "NT=Tyr->Asp;AC=682;", "Tyr->Cys substitution": "NT=Tyr->Cys;AC=683;", "Mass Defect Tag on lysine e-amino": "NT=BDMAPP;AC=684;", "Nitroalkylation by Nitro Linoleic Acid": "NT=NA-LNO2;AC=685;", "Nitroalkylation by Nitro Oleic Acid": "NT=NA-OA-NO2;AC=686;", "Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form": "NT=ICPL:2H(4);AC=687;", "13C(6) 15N(1) Silac label": "NT=Label:13C(6)15N(1);AC=695;", "13C(6) 15N(2) (D)9 SILAC label": "NT=Label:2H(9)13C(6)15N(2);AC=696;", "Nicotinic Acid": "NT=NIC;AC=697;", "deuterated Nicotinic Acid": "NT=dNIC;AC=698;", "Dehydrated 4-hydroxynonenal": "NT=HNE-Delta:H(2)O;AC=720;", "4-Oxononenal (ONE)": "NT=4-ONE;AC=721;", "O-Dimethylphosphorylation": "NT=O-Dimethylphosphate;AC=723;", "O-Methylphosphorylation": "NT=O-Methylphosphate;AC=724;", "O-Diethylphosphorylation": "NT=Diethylphosphate;AC=725;", "O-Ethylphosphorylation": "NT=Ethylphosphate;AC=726;", "O-pinacolylmethylphosphonylation": "NT=O-pinacolylmethylphosphonate;AC=727;", "Methylphosphonylation": "NT=Methylphosphonate;AC=728;", "O-Isopropylmethylphosphonylation": "NT=O-Isopropylmethylphosphonate;AC=729;", "Representative mass and accurate mass for 113, 114, 116 & 117": "NT=iTRAQ8plex;AC=730;", "Accurate mass for 115, 118, 119 & 121": "NT=iTRAQ8plex:13C(6)15N(2);AC=731;", "Carboxyl modification with ethanolamine": "NT=Ethanolamine;AC=734;", "Beta elimination of modified S or T followed by Michael addition of DTT": "NT=BEMAD_ST;AC=735;", "Beta elimination of alkylated Cys followed by Michael addition of DTT": "NT=BEMAD_C;AC=736;", "Sixplex Tandem Mass Tag\u00ae": "NT=TMT6plex;AC=737;", "Duplex Tandem Mass Tag\u00ae": "NT=TMT2plex;AC=738;", "Native Tandem Mass Tag\u00ae": "NT=TMT;AC=739;", "ExacTag Thiol label mass for 2-4-7-10 plex": "NT=ExacTagThiol;AC=740;", "ExacTag Amine label mass for 2-4-7-10 plex": "NT=ExacTagAmine;AC=741;", "Dehydrated 4-Oxononenal Michael adduct": "NT=4-ONE+Delta:H(-2)O(-1);AC=743;", "Nitroso Sulfamethoxazole Sulphenamide thiol adduct": "NT=NO_SMX_SEMD;AC=744;", "Nitroso Sulfamethoxazole Sulfinamide thiol adduct": "NT=NO_SMX_SIMD;AC=746;", "Malonylation": "NT=Malonyl;AC=747;", "derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester": "NT=3sulfo;AC=748;", "trifluoroleucine replacement of leucine": "NT=trifluoro;AC=750;", "tri nitro benzene": "NT=TNBS;AC=751;", "Isotope Distribution Encoded Tag": "NT=IDEnT;AC=762;", "Beta elimination of modified S or T followed by Michael addition of labelled DTT": "NT=BEMAD_ST:2H(6);AC=763;", "Beta elimination of alkylated Cys followed by Michael addition of labelled DTT": "NT=BEMAD_C:2H(6);AC=764;", "Removal of initiator methionine from protein N-terminus": "NT=Met-loss;AC=765;", "Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus": "NT=Met-loss+Acetyl;AC=766;", "Menadione hydroquinone derivative": "NT=Menadione-HQ;AC=767;", "Mono-methylated lysine labelled with Acetyl_heavy": "NT=Methyl+Acetyl:2H(3);AC=768;", "lapachenole photochemically added to cysteine": "NT=lapachenole;AC=771;", "13C(5) Silac label": "NT=Label:13C(5);AC=772;", "Alkylation by biotinylated form of phenacyl bromide": "NT=Biotin-phenacyl;AC=774;", "Iodoacetic acid derivative w/ 13C label": "NT=Carboxymethyl:13C(2);AC=775;", "D5 N-ethylmaleimide on cysteines": "NT=NEM:2H(5);AC=776;", "deuterium cysteamine modification to S or T": "NT=AEC-MAEC:2H(4);AC=792;", "Hex1HexNAc1": "NT=Hex(1)HexNAc(1);AC=793;", "13C6 labeled ubiquitinylation residue": "NT=Label:13C(6)+GG;AC=799;", "was PentylamineBiotin": "NT=Biotin:Thermo-21345;AC=800;", "Labeling transglutaminase substrate on glutamine side chain": "NT=Pentylamine;AC=801;", "was Biotin-PEO4-hydrazide": "NT=Biotin:Thermo-21360;AC=811;", "fluorescent dye that labels cysteines": "NT=Cy3b-maleimide;AC=821;", "Enzymatic glycine removal leaving an amidated C-terminus": "NT=Gly-loss+Amide;AC=822;", "Intact or monolink BMOE crosslinker": "NT=Xlink:BMOE;AC=824;", "Intact DFDNB crosslinker": "NT=Xlink:DFDNB;AC=825;", "tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative": "NT=TMPP-Ac;AC=827;", "Dihydroxy methylglyoxal adduct": "NT=Dihydroxyimidazolidine;AC=830;", "Acetyl 4,4,5,5-D4 Lysine": "NT=Label:2H(4)+Acetyl;AC=834;", "Acetyl 13C(6) Silac label": "NT=Label:13C(6)+Acetyl;AC=835;", "Acetyl_13C(6) 15N(2) Silac label": "NT=Label:13C(6)15N(2)+Acetyl;AC=836;", "Arginine replacement by Nitropyrimidyl ornithine": "NT=Arg->Npo;AC=837;", "Sumo mutant Smt3-WT tail following trypsin digestion": "NT=EQIGG;AC=846;", "Adduct of phenylglyoxal with Arg": "NT=Arg2PG;AC=848;", "S-guanylation": "NT=cGMP;AC=849;", "S-guanylation-2": "NT=cGMP+RMP-loss;AC=851;", "Ubiquitination 2H4 lysine": "NT=Label:2H(4)+GG;AC=853;", "Methylglyoxal-derived hydroimidazolone": "NT=MG-H1;AC=859;", "Glyoxal-derived hydroimiadazolone": "NT=G-H1;AC=860;", "NHS ester linked Green Fluorescent Bodipy Dye": "NT=ZGB;AC=861;", "SILAC": "NT=Label:13C(1)2H(3);AC=862;", "13C(6) 15N(2) Lysine glygly": "NT=Label:13C(6)15N(2)+GG;AC=864;", "Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form": "NT=ICPL:13C(6)2H(4);AC=866;", "SUMOylation by SUMO-1": "NT=QEQTGG;AC=876;", "SUMOylation by SUMO-2/3": "NT=QQQTGG;AC=877;", "was ChromoBiotin": "NT=Biotin:Thermo-21325;AC=884;", "Oxidised methionine 13C(1)2H(3) SILAC label": "NT=Label:13C(1)2H(3)+Oxidation;AC=885;", "2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate": "NT=HydroxymethylOP;AC=886;", "covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253)": "NT=MDCC;AC=887;", "mTRAQ light": "NT=mTRAQ;AC=888;", "mTRAQ medium": "NT=mTRAQ:13C(3)15N(1);AC=889;", "Thiol-reactive dye for fluorescence labelling of proteins": "NT=DyLight-maleimide;AC=890;", "Carbamidomethylated DTT modification of cysteine": "NT=CarbamidomethylDTT;AC=893;", "Carboxymethylated DTT modification of cysteine": "NT=CarboxymethylDTT;AC=894;", "Biotin polyethyleneoxide (n=3) alkyne": "NT=Biotin-PEG-PRA;AC=895;", "Methionine replacement by azido homoalanine": "NT=Met->Aha;AC=896;", "SILAC 15N(4)": "NT=Label:15N(4);AC=897;", "pyrophosphorylation of Ser/Thr": "NT=pyrophospho;AC=898;", "methionine replacement by homopropargylglycine": "NT=Met->Hpg;AC=899;", "2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine": "NT=4AcAllylGal;AC=901;", "Reaction with dimethylarsinous (AsIII) acid": "NT=DimethylArsino;AC=902;", "Lys->Cys substitution and carbamidomethylation": "NT=Lys->CamCys;AC=903;", "Phe->Cys substitution and carbamidomethylation": "NT=Phe->CamCys;AC=904;", "Leu->Met substitution and sulfoxidation": "NT=Leu->MetOx;AC=905;", "Lys->Met substitution and sulfoxidation": "NT=Lys->MetOx;AC=906;", "Gluconoylation": "NT=Galactosyl;AC=907;", "Monolink of SMCC terminated with 3-(dimethylamino)-1-propylamine": "NT=Xlink:SMCC[321];AC=908;", "2,4-diacetamido-2,4,6-trideoxyglucopyranose": "NT=Bacillosamine;AC=910;", "Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL)": "NT=MTSL;AC=911;", "4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced": "NT=HNE-BAHAH;AC=912;", "Methylmalonylation on Serine": "NT=Methylmalonylation;AC=914;", "13C(4) 15N(2) Lysine glygly": "NT=Label:13C(4)15N(2)+GG;AC=923;", "ethyl amino": "NT=ethylamino;AC=926;", "2-OH-ethyl thio-Ser": "NT=MercaptoEthanol;AC=928;", "deamidation followed by esterification with ethanol": "NT=Ethyl+Deamidated;AC=931;", "SUMOylation by SUMO-2/3 (formic acid cleavage)": "NT=VFQQQTGG;AC=932;", "SUMOylation by SUMO-1 (formic acid cleavage)": "NT=VIEVYQEQTGG;AC=933;", "Photocleavable Biotin + GalNAz on O-GlcNAc": "NT=AMTzHexNAc2;AC=934;", "High molecular absorption maleimide label for proteins": "NT=Atto495Maleimide;AC=935;", "Chlorination of tyrosine residues": "NT=Chlorination;AC=936;", "Dichlorination": "NT=dichlorination;AC=937;", "Cysteine modifier": "NT=AROD;AC=938;", "carbamidomethylated Cys that undergoes beta-elimination and Michael addition of methylamine": "NT=Cys->methylaminoAla;AC=939;", "Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ethylamine": "NT=Cys->ethylaminoAla;AC=940;", "2,4-Dinitrobenzenesulfenyl": "NT=DNPS;AC=941;", "High molecular absorption label for proteins": "NT=SulfoGMBS;AC=942;", "Modified GMBS X linker": "NT=DimethylamineGMBS;AC=943;", "SILAC label": "NT=Label:15N(2)2H(9);AC=944;", "Levuglandinyl-lysine anhydrolactam adduct": "NT=LG-anhydrolactam;AC=946;", "Levuglandinyl-lysine pyrrole adduct": "NT=LG-pyrrole;AC=947;", "Levuglandinyl-lysine anhyropyrrole adduct": "NT=LG-anhyropyrrole;AC=948;", "Condensation product of 3-deoxyglucosone": "NT=3-deoxyglucosone;AC=949;", "Replacement of proton by lithium": "NT=Cation:Li;AC=950;", "Replacement of 2 protons by calcium": "NT=Cation:Ca[II];AC=951;", "Replacement of 2 protons by iron": "NT=Cation:Fe[II];AC=952;", "Replacement of 2 protons by nickel": "NT=Cation:Ni[II];AC=953;", "Replacement of 2 protons by zinc": "NT=Cation:Zn[II];AC=954;", "Replacement of proton by silver": "NT=Cation:Ag;AC=955;", "Replacement of 2 protons by magnesium": "NT=Cation:Mg[II];AC=956;", "S-(2-succinyl) cysteine": "NT=2-succinyl;AC=957;", "propargylamine": "NT=Propargylamine;AC=958;", "phospho-propargylamine": "NT=Phosphopropargyl;AC=959;", "SUMOylation by SUMO-1 after tryptic cleavage": "NT=SUMO2135;AC=960;", "SUMOylation by SUMO-2/3 after tryptic cleavage": "NT=SUMO3549;AC=961;", "membrane protein extraction": "NT=thioacylPA;AC=967;", "maleimide-3-saccharide": "NT=maleimide3;AC=971;", "maleimide-5-saccharide": "NT=maleimide5;AC=972;", "2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate": "NT=Carbofuran;AC=977;", "Benzyl isothiocyanate": "NT=BITC;AC=978;", "Phenethyl isothiocyanate": "NT=PEITC;AC=979;", "Condensation product of glucosone": "NT=glucosone;AC=981;", "Native cysteine-reactive Tandem Mass Tag\u00ae": "NT=cysTMT;AC=984;", "cysteine-reactive Sixplex Tandem Mass Tag\u00ae": "NT=cysTMT6plex;AC=985;", "Dimethyl 13C(6) Silac label": "NT=Label:13C(6)+Dimethyl;AC=986;", "Dimethyl 13C(6)15N(2) Silac label": "NT=Label:13C(6)15N(2)+Dimethyl;AC=987;", "replacement of proton with ammonium ion": "NT=Ammonium;AC=989;", "ISD (z+2)-series": "NT=ISD_z+2_ion;AC=991;", "was Biotin-maleimide": "NT=Biotin:Sigma-B1267;AC=993;", "15N(1)": "NT=Label:15N(1);AC=994;", "15N(2)": "NT=Label:15N(2);AC=995;", "15N(3)": "NT=Label:15N(3);AC=996;", "aminotyrosine with sulfation": "NT=sulfo+amino;AC=997;", "Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne)": "NT=AHA-Alkyne;AC=1000;", "Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne)": "NT=AHA-Alkyne-KDDDD;AC=1001;", "(-)-epigallocatechin-3-gallate": "NT=EGCG1;AC=1002;", "(-)-dehydroepigallocatechin": "NT=EGCG2;AC=1003;", "Monomethylated Arg13C(6) 15N(4)": "NT=Label:13C(6)15N(4)+Methyl;AC=1004;", "Dimethylated Arg13C(6) 15N(4)": "NT=Label:13C(6)15N(4)+Dimethyl;AC=1005;", "2H(3) 13C(1) monomethylated Arg13C(6) 15N(4)": "NT=Label:13C(6)15N(4)+Methyl:2H(3)13C(1);AC=1006;", "2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4)": "NT=Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2);AC=1007;", "Sec Iodoacetamide derivative": "NT=Cys->CamSec;AC=1008;", "formaldehyde adduct": "NT=Thiazolidine;AC=1009;", "Addition of DEDGFLYMVYASQETFG": "NT=DEDGFLYMVYASQETFG;AC=1010;", "Nalpha-(3-maleimidylpropionyl)biocytin": "NT=Biotin:Invitrogen-M1602;AC=1012;", "glycidamide adduct": "NT=glycidamide;AC=1014;", "C-terminal homoserine lactone and two aminohexanoic acids": "NT=Ahx2+Hsl;AC=1015;", "DMPO spin-trap nitrone adduct": "NT=DMPO;AC=1017;", "Isotope-Coded Dimedone light form": "NT=ICDID;AC=1018;", "Isotope-Coded Dimedone heavy form": "NT=ICDID:2H(6);AC=1019;", "Water-quenched monolink of DSS/BS3 crosslinker": "NT=Xlink:DSS[156];AC=1020;", "Water quenched monolink of EGS cross-linker": "NT=Xlink:EGS[244];AC=1021;", "Water quenched monolink of DST crosslinker": "NT=Xlink:DST[132];AC=1022;", "Water quenched monolink of DSP/DTSSP crosslinker": "NT=Xlink:DTSSP[192];AC=1023;", "Water quenched monolink of SMCC": "NT=Xlink:SMCC[237];AC=1024;", "Water quenched monolink of DMP crosslinker": "NT=Xlink:DMP[140];AC=1027;", "Cleavage product of EGS protein crosslinks by hydroylamine treatment": "NT=Xlink:EGS[115];AC=1028;", "desthiobiotin modification of lysine": "NT=Biotin:Thermo-88310;AC=1031;", "Tyrosine caged with 2-nitrobenzyl (ONB)": "NT=2-nitrobenzyl;AC=1032;", "N-ethylmaleimide on selenocysteines": "NT=Cys->SecNEM;AC=1033;", "D5 N-ethylmaleimide on selenocysteines": "NT=Cys->SecNEM:2H(5);AC=1034;", "Thiadiazolydation of Cys": "NT=Thiadiazole;AC=1035;", "Modification of cystein by withaferin": "NT=Withaferin;AC=1036;", "desthiobiotin fluorophosphonate": "NT=Biotin:Thermo-88317;AC=1037;", "TAMRA fluorophosphonate modification of serine": "NT=TAMRA-FP;AC=1038;", "Maleimide-Biotin + Water": "NT=Biotin:Thermo-21901+H2O;AC=1039;", "Ala->Cys substitution": "NT=Ala->Cys;AC=1044;", "Ala->Phe substitution": "NT=Ala->Phe;AC=1045;", "Ala->His substitution": "NT=Ala->His;AC=1046;", "Ala->Leu/Ile substitution": "NT=Ala->Xle;AC=1047;", "Ala->Lys substitution": "NT=Ala->Lys;AC=1048;", "Ala->Met substitution": "NT=Ala->Met;AC=1049;", "Ala->Asn substitution": "NT=Ala->Asn;AC=1050;", "Ala->Gln substitution": "NT=Ala->Gln;AC=1051;", "Ala->Arg substitution": "NT=Ala->Arg;AC=1052;", "Ala->Trp substitution": "NT=Ala->Trp;AC=1053;", "Ala->Tyr substitution": "NT=Ala->Tyr;AC=1054;", "Cys->Ala substitution": "NT=Cys->Ala;AC=1055;", "Cys->Asp substitution": "NT=Cys->Asp;AC=1056;", "Cys->Glu substitution": "NT=Cys->Glu;AC=1057;", "Cys->His substitution": "NT=Cys->His;AC=1058;", "Cys->Leu/Ile substitution": "NT=Cys->Xle;AC=1059;", "Cys->Lys substitution": "NT=Cys->Lys;AC=1060;", "Cys->Met substitution": "NT=Cys->Met;AC=1061;", "Cys->Asn substitution": "NT=Cys->Asn;AC=1062;", "Cys->Pro substitution": "NT=Cys->Pro;AC=1063;", "Cys->Gln substitution": "NT=Cys->Gln;AC=1064;", "Cys->Thr substitution": "NT=Cys->Thr;AC=1065;", "Cys->Val substitution": "NT=Cys->Val;AC=1066;", "Asp->Cys substitution": "NT=Asp->Cys;AC=1067;", "Asp->Phe substitution": "NT=Asp->Phe;AC=1068;", "Asp->Leu/Ile substitution": "NT=Asp->Xle;AC=1069;", "Asp->Lys substitution": "NT=Asp->Lys;AC=1070;", "Asp->Met substitution": "NT=Asp->Met;AC=1071;", "Asp->Pro substitution": "NT=Asp->Pro;AC=1072;", "Asp->Gln substitution": "NT=Asp->Gln;AC=1073;", "Asp->Arg substitution": "NT=Asp->Arg;AC=1074;", "Asp->Ser substitution": "NT=Asp->Ser;AC=1075;", "Asp->Thr substitution": "NT=Asp->Thr;AC=1076;", "Asp->Trp substitution": "NT=Asp->Trp;AC=1077;", "Glu->Cys substitution": "NT=Glu->Cys;AC=1078;", "Glu->Phe substitution": "NT=Glu->Phe;AC=1079;", "Glu->His substitution": "NT=Glu->His;AC=1080;", "Glu->Leu/Ile substitution": "NT=Glu->Xle;AC=1081;", "Glu->Met substitution": "NT=Glu->Met;AC=1082;", "Glu->Asn substitution": "NT=Glu->Asn;AC=1083;", "Glu->Pro substitution": "NT=Glu->Pro;AC=1084;", "Glu->Arg substitution": "NT=Glu->Arg;AC=1085;", "Glu->Ser substitution": "NT=Glu->Ser;AC=1086;", "Glu->Thr substitution": "NT=Glu->Thr;AC=1087;", "Glu->Trp substitution": "NT=Glu->Trp;AC=1088;", "Glu->Tyr substitution": "NT=Glu->Tyr;AC=1089;", "Phe->Ala substitution": "NT=Phe->Ala;AC=1090;", "Phe->Asp substitution": "NT=Phe->Asp;AC=1091;", "Phe->Glu substitution": "NT=Phe->Glu;AC=1092;", "Phe->Gly substitution": "NT=Phe->Gly;AC=1093;", "Phe->His substitution": "NT=Phe->His;AC=1094;", "Phe->Lys substitution": "NT=Phe->Lys;AC=1095;", "Phe->Met substitution": "NT=Phe->Met;AC=1096;", "Phe->Asn substitution": "NT=Phe->Asn;AC=1097;", "Phe->Pro substitution": "NT=Phe->Pro;AC=1098;", "Phe->Gln substitution": "NT=Phe->Gln;AC=1099;", "Phe->Arg substitution": "NT=Phe->Arg;AC=1100;", "Phe->Thr substitution": "NT=Phe->Thr;AC=1101;", "Phe->Trp substitution": "NT=Phe->Trp;AC=1102;", "Gly->Phe substitution": "NT=Gly->Phe;AC=1103;", "Gly->His substitution": "NT=Gly->His;AC=1104;", "Gly->Leu/Ile substitution": "NT=Gly->Xle;AC=1105;", "Gly->Lys substitution": "NT=Gly->Lys;AC=1106;", "Gly->Met substitution": "NT=Gly->Met;AC=1107;", "Gly->Asn substitution": "NT=Gly->Asn;AC=1108;", "Gly->Pro substitution": "NT=Gly->Pro;AC=1109;", "Gly->Gln substitution": "NT=Gly->Gln;AC=1110;", "Gly->Thr substitution": "NT=Gly->Thr;AC=1111;", "Gly->Tyr substitution": "NT=Gly->Tyr;AC=1112;", "His->Ala substitution": "NT=His->Ala;AC=1113;", "His->Cys substitution": "NT=His->Cys;AC=1114;", "His->Glu substitution": "NT=His->Glu;AC=1115;", "His->Phe substitution": "NT=His->Phe;AC=1116;", "His->Gly substitution": "NT=His->Gly;AC=1117;", "His->Lys substitution": "NT=His->Lys;AC=1119;", "His->Met substitution": "NT=His->Met;AC=1120;", "His->Ser substitution": "NT=His->Ser;AC=1121;", "His->Thr substitution": "NT=His->Thr;AC=1122;", "His->Val substitution": "NT=His->Val;AC=1123;", "His->Trp substitution": "NT=His->Trp;AC=1124;", "Leu/Ile->Ala substitution": "NT=Xle->Ala;AC=1125;", "Leu/Ile->Cys substitution": "NT=Xle->Cys;AC=1126;", "Leu/Ile->Asp substitution": "NT=Xle->Asp;AC=1127;", "Leu/Ile->Glu substitution": "NT=Xle->Glu;AC=1128;", "Leu/Ile->Gly substitution": "NT=Xle->Gly;AC=1129;", "Leu/Ile->Tyr substitution": "NT=Xle->Tyr;AC=1130;", "Lys->Ala substitution": "NT=Lys->Ala;AC=1131;", "Lys->Cys substitution": "NT=Lys->Cys;AC=1132;", "Lys->Asp substitution": "NT=Lys->Asp;AC=1133;", "Lys->Phe substitution": "NT=Lys->Phe;AC=1134;", "Lys->Gly substitution": "NT=Lys->Gly;AC=1135;", "Lys->His substitution": "NT=Lys->His;AC=1136;", "Lys->Pro substitution": "NT=Lys->Pro;AC=1137;", "Lys->Ser substitution": "NT=Lys->Ser;AC=1138;", "Lys->Val substitution": "NT=Lys->Val;AC=1139;", "Lys->Trp substitution": "NT=Lys->Trp;AC=1140;", "Lys->Tyr substitution": "NT=Lys->Tyr;AC=1141;", "Met->Ala substitution": "NT=Met->Ala;AC=1142;", "Met->Cys substitution": "NT=Met->Cys;AC=1143;", "Met->Asp substitution": "NT=Met->Asp;AC=1144;", "Met->Glu substitution": "NT=Met->Glu;AC=1145;", "Met->Phe substitution": "NT=Met->Phe;AC=1146;", "Met->Gly substitution": "NT=Met->Gly;AC=1147;", "Met->His substitution": "NT=Met->His;AC=1148;", "Met->Asn substitution": "NT=Met->Asn;AC=1149;", "Met->Pro substitution": "NT=Met->Pro;AC=1150;", "Met->Gln substitution": "NT=Met->Gln;AC=1151;", "Met->Ser substitution": "NT=Met->Ser;AC=1152;", "Met->Trp substitution": "NT=Met->Trp;AC=1153;", "Met->Tyr substitution": "NT=Met->Tyr;AC=1154;", "Asn->Ala substitution": "NT=Asn->Ala;AC=1155;", "Asn->Cys substitution": "NT=Asn->Cys;AC=1156;", "Asn->Glu substitution": "NT=Asn->Glu;AC=1157;", "Asn->Phe substitution": "NT=Asn->Phe;AC=1158;", "Asn->Gly substitution": "NT=Asn->Gly;AC=1159;", "Asn->Met substitution": "NT=Asn->Met;AC=1160;", "Asn->Pro substitution": "NT=Asn->Pro;AC=1161;", "Asn->Gln substitution": "NT=Asn->Gln;AC=1162;", "Asn->Arg substitution": "NT=Asn->Arg;AC=1163;", "Asn->Val substitution": "NT=Asn->Val;AC=1164;", "Asn->Trp substitution": "NT=Asn->Trp;AC=1165;", "Pro->Cys substitution": "NT=Pro->Cys;AC=1166;", "Pro->Asp substitution": "NT=Pro->Asp;AC=1167;", "Pro->Glu substitution": "NT=Pro->Glu;AC=1168;", "Pro->Phe substitution": "NT=Pro->Phe;AC=1169;", "Pro->Gly substitution": "NT=Pro->Gly;AC=1170;", "Pro->Lys substitution": "NT=Pro->Lys;AC=1171;", "Pro->Met substitution": "NT=Pro->Met;AC=1172;", "Pro->Asn substitution": "NT=Pro->Asn;AC=1173;", "Pro->Val substitution": "NT=Pro->Val;AC=1174;", "Pro->Trp substitution": "NT=Pro->Trp;AC=1175;", "Pro->Tyr substitution": "NT=Pro->Tyr;AC=1176;", "Gln->Ala substitution": "NT=Gln->Ala;AC=1177;", "Gln->Cys substitution": "NT=Gln->Cys;AC=1178;", "Gln->Asp substitution": "NT=Gln->Asp;AC=1179;", "Gln->Phe substitution": "NT=Gln->Phe;AC=1180;", "Gln->Gly substitution": "NT=Gln->Gly;AC=1181;", "Gln->Met substitution": "NT=Gln->Met;AC=1182;", "Gln->Asn substitution": "NT=Gln->Asn;AC=1183;", "Gln->Ser substitution": "NT=Gln->Ser;AC=1184;", "Gln->Thr substitution": "NT=Gln->Thr;AC=1185;", "Gln->Val substitution": "NT=Gln->Val;AC=1186;", "Gln->Trp substitution": "NT=Gln->Trp;AC=1187;", "Gln->Tyr substitution": "NT=Gln->Tyr;AC=1188;", "Arg->Ala substitution": "NT=Arg->Ala;AC=1189;", "Arg->Asp substitution": "NT=Arg->Asp;AC=1190;", "Arg->Glu substitution": "NT=Arg->Glu;AC=1191;", "Arg->Asn substitution": "NT=Arg->Asn;AC=1192;", "Arg->Val substitution": "NT=Arg->Val;AC=1193;", "Arg->Tyr substitution": "NT=Arg->Tyr;AC=1194;", "Arg->Phe substitution": "NT=Arg->Phe;AC=1195;", "Ser->Asp substitution": "NT=Ser->Asp;AC=1196;", "Ser->Glu substitution": "NT=Ser->Glu;AC=1197;", "Ser->His substitution": "NT=Ser->His;AC=1198;", "Ser->Lys substitution": "NT=Ser->Lys;AC=1199;", "Ser->Met substitution": "NT=Ser->Met;AC=1200;", "Ser->Gln substitution": "NT=Ser->Gln;AC=1201;", "Ser->Val substitution": "NT=Ser->Val;AC=1202;", "Thr->Cys substitution": "NT=Thr->Cys;AC=1203;", "Thr->Asp substitution": "NT=Thr->Asp;AC=1204;", "Thr->Glu substitution": "NT=Thr->Glu;AC=1205;", "Thr->Phe substitution": "NT=Thr->Phe;AC=1206;", "Thr->Gly substitution": "NT=Thr->Gly;AC=1207;", "Thr->His substitution": "NT=Thr->His;AC=1208;", "Thr->Gln substitution": "NT=Thr->Gln;AC=1209;", "Thr->Val substitution": "NT=Thr->Val;AC=1210;", "Thr->Trp substitution": "NT=Thr->Trp;AC=1211;", "Thr->Tyr substitution": "NT=Thr->Tyr;AC=1212;", "Val->Cys substitution": "NT=Val->Cys;AC=1213;", "Val->His substitution": "NT=Val->His;AC=1214;", "Val->Lys substitution": "NT=Val->Lys;AC=1215;", "Val->Asn substitution": "NT=Val->Asn;AC=1216;", "Val->Pro substitution": "NT=Val->Pro;AC=1217;", "Val->Gln substitution": "NT=Val->Gln;AC=1218;", "Val->Arg substitution": "NT=Val->Arg;AC=1219;", "Val->Ser substitution": "NT=Val->Ser;AC=1220;", "Val->Thr substitution": "NT=Val->Thr;AC=1221;", "Val->Trp substitution": "NT=Val->Trp;AC=1222;", "Val->Tyr substitution": "NT=Val->Tyr;AC=1223;", "Trp->Ala substitution": "NT=Trp->Ala;AC=1224;", "Trp->Asp substitution": "NT=Trp->Asp;AC=1225;", "Trp->Glu substitution": "NT=Trp->Glu;AC=1226;", "Trp->Phe substitution": "NT=Trp->Phe;AC=1227;", "Trp->His substitution": "NT=Trp->His;AC=1228;", "Trp->Lys substitution": "NT=Trp->Lys;AC=1229;", "Trp->Met substitution": "NT=Trp->Met;AC=1230;", "Trp->Asn substitution": "NT=Trp->Asn;AC=1231;", "Trp->Pro substitution": "NT=Trp->Pro;AC=1232;", "Trp->Gln substitution": "NT=Trp->Gln;AC=1233;", "Trp->Thr substitution": "NT=Trp->Thr;AC=1234;", "Trp->Val substitution": "NT=Trp->Val;AC=1235;", "Trp->Tyr substitution": "NT=Trp->Tyr;AC=1236;", "Tyr->Ala substitution": "NT=Tyr->Ala;AC=1237;", "Tyr->Glu substitution": "NT=Tyr->Glu;AC=1238;", "Tyr->Gly substitution": "NT=Tyr->Gly;AC=1239;", "Tyr->Lys substitution": "NT=Tyr->Lys;AC=1240;", "Tyr->Met substitution": "NT=Tyr->Met;AC=1241;", "Tyr->Pro substitution": "NT=Tyr->Pro;AC=1242;", "Tyr->Gln substitution": "NT=Tyr->Gln;AC=1243;", "Tyr->Arg substitution": "NT=Tyr->Arg;AC=1244;", "Tyr->Thr substitution": "NT=Tyr->Thr;AC=1245;", "Tyr->Val substitution": "NT=Tyr->Val;AC=1246;", "Tyr->Trp substitution": "NT=Tyr->Trp;AC=1247;", "Tyr->Leu/Ile substitution": "NT=Tyr->Xle;AC=1248;", "Azidohomoalanine coupled to reductively cleaved tag": "NT=AHA-SS;AC=1249;", "carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine": "NT=AHA-SS_CAM;AC=1250;", "Sulfo-SBED Label Photoreactive Biotin Crosslinker": "NT=Biotin:Thermo-33033;AC=1251;", "Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen": "NT=Biotin:Thermo-33033-H;AC=1252;", "S-(2-monomethylsuccinyl) cysteine": "NT=2-monomethylsuccinyl;AC=1253;", "o-toluene": "NT=Saligenin;AC=1254;", "o-toluyl-phosphorylation": "NT=Cresylphosphate;AC=1255;", "Cresyl-Saligenin-phosphorylation": "NT=CresylSaligeninPhosphate;AC=1256;", "Ub Bromide probe addition": "NT=Ub-Br2;AC=1257;", "Ubiquitin vinylmethylester": "NT=Ub-VME;AC=1258;", "Ub Fluorescein probe addition": "NT=Ub-fluorescein;AC=1261;", "S-(2-dimethylsuccinyl) cysteine": "NT=2-dimethylsuccinyl;AC=1262;", "Addition of Glycine": "NT=Gly;AC=1263;", "addition of GGE": "NT=pupylation;AC=1264;", "13C4 Methionine label": "NT=Label:13C(4);AC=1266;", "Oxidised 13C4 labelled Methionine": "NT=Label:13C(4)+Oxidation;AC=1267;", "N-Homocysteine thiolactone": "NT=HCysThiolactone;AC=1270;", "S-homocysteinylation": "NT=HCysteinyl;AC=1271;", "Side reaction of HisTag": "NT=UgiJoullie;AC=1276;", "Cys modified with dipy ligand": "NT=Dipyridyl;AC=1277;", "Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction": "NT=Furan;AC=1278;", "Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction": "NT=Difuran;AC=1279;", "1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine": "NT=BMP-piperidinol;AC=1281;", "Side reaction of PG with Side chain of aspartic or glutamic acid": "NT=UgiJoullieProGly;AC=1282;", "Side reaction of PGPG with Side chain of aspartic or glutamic acid": "NT=UgiJoullieProGlyProGly;AC=1283;", "Glycosylation with IME linked Hex(2) NeuAc": "NT=IMEHex(2)NeuAc(1);AC=1286;", "Loss of arginine due to transpeptidation": "NT=Arg-loss;AC=1287;", "Addition of arginine due to transpeptidation": "NT=Arg;AC=1288;", "Double Carbamidomethylation": "NT=Dicarbamidomethyl;AC=1290;", "Dimethyl-Medium": "NT=Dimethyl:2H(6);AC=1291;", "SUMOylation leaving GlyGlyGln": "NT=GGQ;AC=1292;", "SUMOylation leaving GlnThrGlyGly": "NT=QTGG;AC=1293;", "13C3 label for SILAC": "NT=Label:13C(3);AC=1296;", "SILAC or AQUA label": "NT=Label:13C(3)15N(1);AC=1297;", "13C4 15N1 label for SILAC": "NT=Label:13C(4)15N(1);AC=1298;", "2H(10) label": "NT=Label:2H(10);AC=1299;", "Addition of lysine due to transpeptidation": "NT=Lys;AC=1301;", "mTRAQ heavy": "NT=mTRAQ:13C(6)15N(2);AC=1302;", "N-acetyl neuraminic acid": "NT=NeuAc;AC=1303;", "N-glycoyl neuraminic acid": "NT=NeuGc;AC=1304;", "Reduced acrolein addition +58": "NT=Delta:H(6)C(3)O(1);AC=1312;", "Reduced acrolein addition +96": "NT=Delta:H(8)C(6)O(1);AC=1313;", "biotin hydrazide labeled acrolein addition +298": "NT=biotinAcrolein298;AC=1314;", "3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one": "NT=MM-diphenylpentanone;AC=1315;", "2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one": "NT=EHD-diphenylpentanone;AC=1317;", "Maleimide-Biotin + 2Water": "NT=Biotin:Thermo-21901+2H2O;AC=1320;", "Accurate mass for DiLeu 115 isobaric tag": "NT=DiLeu4plex115;AC=1321;", "Accurate mass for DiLeu 116 isobaric tag": "NT=DiLeu4plex;AC=1322;", "Accurate mass for DiLeu 117 isobaric tag": "NT=DiLeu4plex117;AC=1323;", "Accurate mass for DiLeu 118 isobaric tag": "NT=DiLeu4plex118;AC=1324;", "N-ethylmaleimideSulfur": "NT=NEMsulfur;AC=1326;", "N-ethylmaleimideSulfurWater": "NT=NEMsulfurWater;AC=1328;", "BisANS with loss of both sulfonates": "NT=bisANS-sulfonates;AC=1330;", "Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB)": "NT=DNCB_hapten;AC=1331;", "Biotin-PEG11-maleimide": "NT=Biotin:Thermo-21911;AC=1340;", "Native iodoacetyl Tandem Mass Tag\u00ae": "NT=iodoTMT;AC=1341;", "Sixplex iodoacetyl Tandem Mass Tag\u00ae": "NT=iodoTMT6plex;AC=1342;", "reaction with phenyl salicylate (PS)": "NT=PS_Hapten;AC=1345;", "Cy3 Maleimide mono-Reactive dye": "NT=Cy3-maleimide;AC=1348;", "modification of the lysine side chain from NH2 to guanidine with a H removed in favor of a benzyl group": "NT=benzylguanidine;AC=1349;", "A fixed +1 charge tag attached to the N-terminus of peptides": "NT=CarboxymethylDMAP;AC=1350;", "Formation of five membered aromatic heterocycle": "NT=azole;AC=1355;", "phosphate-ribosylation": "NT=phosphoRibosyl;AC=1356;", "D5 N-ethylmaleimide+water on cysteines": "NT=NEM:2H(5)+H2O;AC=1358;", "Crotonylation": "NT=Crotonyl;AC=1363;", "O-ethyl, N-dimethyl phosphate": "NT=O-Et-N-diMePhospho;AC=1364;", "Hex1dHex1": "NT=dHex(1)Hex(1);AC=1367;", "3-fold methylated lysine labelled with Acetyl_heavy": "NT=Methyl:2H(3)+Acetyl:2H(3);AC=1368;", "Oxidised 2H(3) labelled Methionine": "NT=Label:2H(3)+Oxidation;AC=1370;", "3-fold methylation with deuterated methyl groups": "NT=Trimethyl:2H(9);AC=1371;", "heavy acetylation": "NT=Acetyl:13C(2);AC=1372;", "Hex2dHex1": "NT=dHex(1)Hex(2);AC=1375;", "Hex3dHex1": "NT=dHex(1)Hex(3);AC=1376;", "Hex4dHex1": "NT=dHex(1)Hex(4);AC=1377;", "Hex5dHex1": "NT=dHex(1)Hex(5);AC=1378;", "Hex6dHex1": "NT=dHex(1)Hex(6);AC=1379;", "reaction with methyl vinyl sulfone": "NT=methylsulfonylethyl;AC=1380;", "reaction with ethyl vinyl sulfone": "NT=ethylsulfonylethyl;AC=1381;", "reaction with phenyl vinyl sulfone": "NT=phenylsulfonylethyl;AC=1382;", "PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linkage": "NT=PyridoxalPhosphateH2;AC=1383;", "methionine oxidation to homocysteic acid": "NT=Homocysteic_acid;AC=1384;", "ADP-ribosylation followed by conversion to hydroxamic acid via hydroxylamine": "NT=Hydroxamic_acid;AC=1385;", "Modification by hydroxylated mechloroethamine (HN-2)": "NT=HN2_mustard;AC=1388;", "Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3)": "NT=HN3_mustard;AC=1389;", "N-ethylmaleimide on cysteine sulfenic acid": "NT=Oxidation+NEM;AC=1390;", "fluorescein-hexanoate-NHS hydrolysis": "NT=NHS-fluorescein;AC=1391;", "Representative mass and accurate mass for 114": "NT=DiART6plex;AC=1392;", "Accurate mass for DiART6plex 115": "NT=DiART6plex115;AC=1393;", "Accurate mass for DiART6plex 116 and 119": "NT=DiART6plex116/119;AC=1394;", "Accurate mass for DiART6plex 117": "NT=DiART6plex117;AC=1395;", "Accurate mass for DiART6plex 118": "NT=DiART6plex118;AC=1396;", "iodoacetanilide derivative": "NT=Iodoacetanilide;AC=1397;", "13C labelled iodoacetanilide derivative": "NT=Iodoacetanilide:13C(6);AC=1398;", "Diaminopimelic acid-DSP monolinked": "NT=Dap-DSP;AC=1399;", "N-Acetylmuramic acid": "NT=MurNAc;AC=1400;", "Sumoylation by SUMO-1 after Cyanogen bromide (CNBr) cleavage": "NT=EEEDVIEVYQEQTGG;AC=1405;", "Sumoylation by SUMO-2/3 after Cyanogen bromide (CNBr) cleavage": "NT=EDEDTIDVFQQQTGG;AC=1406;", "A2G2S2/G2S2": "NT=Hex(5)HexNAc(4)NeuAc(2);AC=1408;", "A2G2S1/G2S1": "NT=Hex(5)HexNAc(4)NeuAc(1);AC=1409;", "FA2G2S1/G2FS1": "NT=dHex(1)Hex(5)HexNAc(4)NeuAc(1);AC=1410;", "FA2G2S2/G2FS2": "NT=dHex(1)Hex(5)HexNAc(4)NeuAc(2);AC=1411;", "O3S1HexNAc1": "NT=s-GlcNAc;AC=1412;", "H1O3P1Hex2": "NT=PhosphoHex(2);AC=1413;", "3-fold methylation with fully labelled methyl groups": "NT=Trimethyl:13C(3)2H(9);AC=1414;", "Loss of ammonia (15N)": "NT=15N-oxobutanoic;AC=1419;", "spermine adduct": "NT=spermine;AC=1420;", "spermidine adduct": "NT=spermidine;AC=1421;", "Biotin_PEG4": "NT=Biotin:Thermo-21330;AC=1423;", "Hex Pent": "NT=Hex(1)Pent(1);AC=1426;", "Hex HexA": "NT=Hex(1)HexA(1);AC=1427;", "Hex Pent(2)": "NT=Hex(1)Pent(2);AC=1428;", "Hex HexNAc Phos": "NT=Hex(1)HexNAc(1)Phos(1);AC=1429;", "Hex HexNAc Sulf": "NT=Hex(1)HexNAc(1)Sulf(1);AC=1430;", "Hex NeuAc ---OR--- HexNAc Kdn": "NT=Hex(1)NeuAc(1);AC=1431;", "Hex NeuGc": "NT=Hex(1)NeuGc(1);AC=1432;", "HexNAc NeuAc": "NT=HexNAc(1)NeuAc(1);AC=1434;", "HexNAc NeuGc": "NT=HexNAc(1)NeuGc(1);AC=1435;", "Hex HexNAc dHex Me": "NT=Hex(1)HexNAc(1)dHex(1)Me(1);AC=1436;", "Hex HexNAc dHex Me(2)": "NT=Hex(1)HexNAc(1)dHex(1)Me(2);AC=1437;", "Hex(2) HexNAc": "NT=Hex(2)HexNAc(1);AC=1438;", "Hex HexA HexNAc": "NT=Hex(1)HexA(1)HexNAc(1);AC=1439;", "Hex(2) HexNAc Me": "NT=Hex(2)HexNAc(1)Me(1);AC=1440;", "Hex Pent(3)": "NT=Hex(1)Pent(3);AC=1441;", "Hex NeuAc Pent": "NT=Hex(1)NeuAc(1)Pent(1);AC=1442;", "Hex(2) HexNAc Sulf": "NT=Hex(2)HexNAc(1)Sulf(1);AC=1443;", "Hex(2) NeuAc ---OR--- Hex HexNAc Kdn": "NT=Hex(2)NeuAc(1);AC=1444;", "Hex2 dHex2": "NT=dHex(2)Hex(2);AC=1445;", "dHex Hex(2) HexA": "NT=dHex(1)Hex(2)HexA(1);AC=1446;", "Hex HexNAc(2) Sulf": "NT=Hex(1)HexNAc(2)Sulf(1);AC=1447;", "dHex Hex(2) HexNAc(2) Pent": "NT=dHex(1)Hex(2)HexNAc(2)Pent(1);AC=1449;", "Hex(2) HexNAc(2) NeuAc ---OR--- dHex Hex HexNAc(2) NeuGc": "NT=Hex(2)HexNAc(2)NeuAc(1);AC=1450;", "Hex(3) HexNAc(2) Pent": "NT=Hex(3)HexNAc(2)Pent(1);AC=1451;", "Hex(4) HexNAc(2)": "NT=Hex(4)HexNAc(2);AC=1452;", "dHex Hex(4) HexNAc Pent": "NT=dHex(1)Hex(4)HexNAc(1)Pent(1);AC=1453;", "dHex Hex(3) HexNAc(2) Pent": "NT=dHex(1)Hex(3)HexNAc(2)Pent(1);AC=1454;", "Hex(3) HexNAc(2) NeuAc": "NT=Hex(3)HexNAc(2)NeuAc(1);AC=1455;", "Hex(4) HexNAc(2) Pent": "NT=Hex(4)HexNAc(2)Pent(1);AC=1456;", "Hex(3) HexNAc(3) Pent": "NT=Hex(3)HexNAc(3)Pent(1);AC=1457;", "Hex(5) HexNAc(2) Phos": "NT=Hex(5)HexNAc(2)Phos(1);AC=1458;", "dHex Hex(4) HexNAc(2) Pent": "NT=dHex(1)Hex(4)HexNAc(2)Pent(1);AC=1459;", "Hex(7) HexNAc": "NT=Hex(7)HexNAc(1);AC=1460;", "Hex(4) HexNAc(2) NeuAc ---OR--- Hex(3) HexNAc(2) dHex NeuGc": "NT=Hex(4)HexNAc(2)NeuAc(1);AC=1461;", "dHex Hex(5) HexNAc(2)": "NT=dHex(1)Hex(5)HexNAc(2);AC=1462;", "dHex Hex(3) HexNAc(3) Pent": "NT=dHex(1)Hex(3)HexNAc(3)Pent(1);AC=1463;", "Hex(3) HexNAc(4) Sulf": "NT=Hex(3)HexNAc(4)Sulf(1);AC=1464;", "M6/Man6": "NT=Hex(6)HexNAc(2);AC=1465;", "Hex(4) HexNAc(3) Pent": "NT=Hex(4)HexNAc(3)Pent(1);AC=1466;", "dHex Hex(4) HexNAc(3)": "NT=dHex(1)Hex(4)HexNAc(3);AC=1467;", "Hex(5) HexNAc(3)": "NT=Hex(5)HexNAc(3);AC=1468;", "Hex(3) HexNAc(4) Pent": "NT=Hex(3)HexNAc(4)Pent(1);AC=1469;", "Hex(6) HexNAc(2) Phos": "NT=Hex(6)HexNAc(2)Phos(1);AC=1470;", "dHex Hex(4) HexNAc(3) Sulf": "NT=dHex(1)Hex(4)HexNAc(3)Sulf(1);AC=1471;", "dHex Hex(5) HexNAc(2) Pent": "NT=dHex(1)Hex(5)HexNAc(2)Pent(1);AC=1472;", "Hex(8) HexNAc": "NT=Hex(8)HexNAc(1);AC=1473;", "dHex Hex(3) HexNAc(3) Pent(2)": "NT=dHex(1)Hex(3)HexNAc(3)Pent(2);AC=1474;", "dHex(2) Hex(3) HexNAc(3) Pent": "NT=dHex(2)Hex(3)HexNAc(3)Pent(1);AC=1475;", "dHex Hex(3) HexNAc(4) Sulf": "NT=dHex(1)Hex(3)HexNAc(4)Sulf(1);AC=1476;", "dHex Hex(6) HexNAc(2)": "NT=dHex(1)Hex(6)HexNAc(2);AC=1477;", "dHex Hex(4) HexNAc(3) Pent": "NT=dHex(1)Hex(4)HexNAc(3)Pent(1);AC=1478;", "Hex(4) HexNAc(4) Sulf": "NT=Hex(4)HexNAc(4)Sulf(1);AC=1479;", "M7/Man7": "NT=Hex(7)HexNAc(2);AC=1480;", "dHex(2) Hex(4) HexNAc(3)": "NT=dHex(2)Hex(4)HexNAc(3);AC=1481;", "Hex(5) HexNAc(3) Pent": "NT=Hex(5)HexNAc(3)Pent(1);AC=1482;", "Hex(4) HexNAc(3) NeuGc": "NT=Hex(4)HexNAc(3)NeuGc(1);AC=1483;", "dHex Hex(5) HexNAc(3)": "NT=dHex(1)Hex(5)HexNAc(3);AC=1484;", "dHex Hex(3) HexNAc(4) Pent": "NT=dHex(1)Hex(3)HexNAc(4)Pent(1);AC=1485;", "Hex(3) HexNAc(5) Sulf": "NT=Hex(3)HexNAc(5)Sulf(1);AC=1486;", "Hex(6) HexNAc(3)": "NT=Hex(6)HexNAc(3);AC=1487;", "Hex(3) HexNAc(4) NeuAc ---OR--- Hex(2) HexNAc(4) dHex NeuGc": "NT=Hex(3)HexNAc(4)NeuAc(1);AC=1488;", "Hex(4) HexNAc(4) Pent": "NT=Hex(4)HexNAc(4)Pent(1);AC=1489;", "Hex(7) HexNAc(2) Phos": "NT=Hex(7)HexNAc(2)Phos(1);AC=1490;", "Hex(4) HexNAc(4) Me(2) Pent": "NT=Hex(4)HexNAc(4)Me(2)Pent(1);AC=1491;", "dHex Hex(3) HexNAc(3) Pent(3) ---OR--- Hex(4) HexNAc(2) dHex(2) NeuAc": "NT=dHex(1)Hex(3)HexNAc(3)Pent(3);AC=1492;", "dHex Hex(5) HexNAc(3) Sulf": "NT=dHex(1)Hex(5)HexNAc(3)Sulf(1);AC=1493;", "dHex(2) Hex(3) HexNAc(3) Pent(2)": "NT=dHex(2)Hex(3)HexNAc(3)Pent(2);AC=1494;", "Hex(6) HexNAc(3) Phos": "NT=Hex(6)HexNAc(3)Phos(1);AC=1495;", "Hex(4) HexNAc(5)": "NT=Hex(4)HexNAc(5);AC=1496;", "dHex(3) Hex(3) HexNAc(3) Pent": "NT=dHex(3)Hex(3)HexNAc(3)Pent(1);AC=1497;", "dHex(2) Hex(4) HexNAc(3) Pent": "NT=dHex(2)Hex(4)HexNAc(3)Pent(1);AC=1498;", "dHex Hex(4) HexNAc(4) Sulf": "NT=dHex(1)Hex(4)HexNAc(4)Sulf(1);AC=1499;", "dHex Hex(7) HexNAc(2)": "NT=dHex(1)Hex(7)HexNAc(2);AC=1500;", "dHex Hex(4) HexNAc(3) NeuAc ---OR--- dHex(2) Hex(3) HexNAc(3) NeuGc": "NT=dHex(1)Hex(4)HexNAc(3)NeuAc(1);AC=1501;", "Hex(7) HexNAc(2) Phos(2)": "NT=Hex(7)HexNAc(2)Phos(2);AC=1502;", "Hex(5) HexNAc(4) Sulf": "NT=Hex(5)HexNAc(4)Sulf(1);AC=1503;", "M8/Man8": "NT=Hex(8)HexNAc(2);AC=1504;", "dHex Hex(3) HexNAc(4) Pent(2)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(2);AC=1505;", "dHex Hex(4) HexNAc(3) NeuGc ---OR--- Hex(5) HexNAc(3) NeuAc": "NT=dHex(1)Hex(4)HexNAc(3)NeuGc(1);AC=1506;", "dHex(2) Hex(3) HexNAc(4) Pent": "NT=dHex(2)Hex(3)HexNAc(4)Pent(1);AC=1507;", "dHex Hex(3) HexNAc(5) Sulf": "NT=dHex(1)Hex(3)HexNAc(5)Sulf(1);AC=1508;", "dHex Hex(6) HexNAc(3)": "NT=dHex(1)Hex(6)HexNAc(3);AC=1509;", "dHex Hex(3) HexNAc(4) NeuAc": "NT=dHex(1)Hex(3)HexNAc(4)NeuAc(1);AC=1510;", "dHex(3) Hex(3) HexNAc(4)": "NT=dHex(3)Hex(3)HexNAc(4);AC=1511;", "dHex Hex(4) HexNAc(4) Pent": "NT=dHex(1)Hex(4)HexNAc(4)Pent(1);AC=1512;", "Hex(4) HexNAc(5) Sulf": "NT=Hex(4)HexNAc(5)Sulf(1);AC=1513;", "Hex(7) HexNAc(3)": "NT=Hex(7)HexNAc(3);AC=1514;", "dHex Hex(4) HexNAc(3) NeuAc Sulf": "NT=dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1);AC=1515;", "Hex(5) HexNAc(4) Me(2) Pent": "NT=Hex(5)HexNAc(4)Me(2)Pent(1);AC=1516;", "Hex(3) HexNAc(6) Sulf": "NT=Hex(3)HexNAc(6)Sulf(1);AC=1517;", "dHex Hex(6) HexNAc(3) Sulf": "NT=dHex(1)Hex(6)HexNAc(3)Sulf(1);AC=1518;", "dHex Hex(4) HexNAc(5)": "NT=dHex(1)Hex(4)HexNAc(5);AC=1519;", "dHex Hex(5) HexA HexNAc(3) Sulf": "NT=dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1);AC=1520;", "Hex(7) HexNAc(3) Phos": "NT=Hex(7)HexNAc(3)Phos(1);AC=1521;", "Hex(6) HexNAc(4) Me(3)": "NT=Hex(6)HexNAc(4)Me(3);AC=1522;", "dHex(2) Hex(4) HexNAc(4) Sulf": "NT=dHex(2)Hex(4)HexNAc(4)Sulf(1);AC=1523;", "Hex(4) HexNAc(3) NeuAc(2)": "NT=Hex(4)HexNAc(3)NeuAc(2);AC=1524;", "dHex Hex(3) HexNAc(4) Pent(3)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(3);AC=1525;", "dHex(2) Hex(5) HexNAc(3) Pent": "NT=dHex(2)Hex(5)HexNAc(3)Pent(1);AC=1526;", "dHex Hex(5) HexNAc(4) Sulf": "NT=dHex(1)Hex(5)HexNAc(4)Sulf(1);AC=1527;", "dHex(2) Hex(3) HexNAc(4) Pent(2)": "NT=dHex(2)Hex(3)HexNAc(4)Pent(2);AC=1528;", "dHex Hex(5) HexNAc(3) NeuAc": "NT=dHex(1)Hex(5)HexNAc(3)NeuAc(1);AC=1529;", "Hex(3) HexNAc(6) Sulf(2)": "NT=Hex(3)HexNAc(6)Sulf(2);AC=1530;", "M9/Man9": "NT=Hex(9)HexNAc(2);AC=1531;", "Hex(4) HexNAc(6)": "NT=Hex(4)HexNAc(6);AC=1532;", "dHex(3) Hex(3) HexNAc(4) Pent": "NT=dHex(3)Hex(3)HexNAc(4)Pent(1);AC=1533;", "dHex Hex(5) HexNAc(3) NeuGc ---OR--- Hex(6) HexNAc(3) NeuAc": "NT=dHex(1)Hex(5)HexNAc(3)NeuGc(1);AC=1534;", "dHex(2) Hex(4) HexNAc(4) Pent": "NT=dHex(2)Hex(4)HexNAc(4)Pent(1);AC=1535;", "dHex Hex(4) HexNAc(5) Sulf": "NT=dHex(1)Hex(4)HexNAc(5)Sulf(1);AC=1536;", "dHex Hex(7) HexNAc(3)": "NT=dHex(1)Hex(7)HexNAc(3);AC=1537;", "dHex Hex(5) HexNAc(4) Pent": "NT=dHex(1)Hex(5)HexNAc(4)Pent(1);AC=1538;", "dHex Hex(5) HexA HexNAc(3) Sulf(2)": "NT=dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2);AC=1539;", "Hex(3) HexNAc(7)": "NT=Hex(3)HexNAc(7);AC=1540;", "dHex(2) Hex(5) HexNAc(4)": "NT=dHex(2)Hex(5)HexNAc(4);AC=1541;", "dHex(2) Hex(4) HexNAc(3) NeuAc Sulf": "NT=dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1);AC=1542;", "dHex Hex(5) HexNAc(4) Sulf(2)": "NT=dHex(1)Hex(5)HexNAc(4)Sulf(2);AC=1543;", "dHex Hex(5) HexNAc(4) Me(2) Pent": "NT=dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1);AC=1544;", "Hex(5) HexNAc(4) NeuGc": "NT=Hex(5)HexNAc(4)NeuGc(1);AC=1545;", "dHex Hex(3) HexNAc(6) Sulf": "NT=dHex(1)Hex(3)HexNAc(6)Sulf(1);AC=1546;", "dHex Hex(6) HexNAc(4)": "NT=dHex(1)Hex(6)HexNAc(4);AC=1547;", "dHex Hex(5) HexNAc(3) NeuAc Sulf": "NT=dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1);AC=1548;", "Hex(7) HexNAc(4)": "NT=Hex(7)HexNAc(4);AC=1549;", "dHex Hex(5) HexNAc(3) NeuGc Sulf": "NT=dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1);AC=1550;", "Hex(4) HexNAc(5) NeuAc": "NT=Hex(4)HexNAc(5)NeuAc(1);AC=1551;", "Hex(6) HexNAc(4) Me(3) Pent": "NT=Hex(6)HexNAc(4)Me(3)Pent(1);AC=1552;", "dHex Hex(7) HexNAc(3) Sulf": "NT=dHex(1)Hex(7)HexNAc(3)Sulf(1);AC=1553;", "dHex Hex(7) HexNAc(3) Phos": "NT=dHex(1)Hex(7)HexNAc(3)Phos(1);AC=1554;", "dHex Hex(5) HexNAc(5)": "NT=dHex(1)Hex(5)HexNAc(5);AC=1555;", "dHex Hex(4) HexNAc(4) NeuAc Sulf": "NT=dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1);AC=1556;", "dHex(3) Hex(4) HexNAc(4) Sulf": "NT=dHex(3)Hex(4)HexNAc(4)Sulf(1);AC=1557;", "Hex(3) HexNAc(7) Sulf": "NT=Hex(3)HexNAc(7)Sulf(1);AC=1558;", "A3G3": "NT=Hex(6)HexNAc(5);AC=1559;", "Hex(5) HexNAc(4) NeuAc Sulf": "NT=Hex(5)HexNAc(4)NeuAc(1)Sulf(1);AC=1560;", "Hex(3) HexNAc(6) NeuAc": "NT=Hex(3)HexNAc(6)NeuAc(1);AC=1561;", "dHex(2) Hex(3) HexNAc(6)": "NT=dHex(2)Hex(3)HexNAc(6);AC=1562;", "Hex HexNAc NeuGc": "NT=Hex(1)HexNAc(1)NeuGc(1);AC=1563;", "dHex Hex(2) HexNAc": "NT=dHex(1)Hex(2)HexNAc(1);AC=1564;", "HexNAc(3) Sulf": "NT=HexNAc(3)Sulf(1);AC=1565;", "Hex(3) HexNAc": "NT=Hex(3)HexNAc(1);AC=1566;", "Hex HexNAc Kdn Sulf": "NT=Hex(1)HexNAc(1)Kdn(1)Sulf(1);AC=1567;", "HexNAc(2) NeuAc": "NT=HexNAc(2)NeuAc(1);AC=1568;", "HexNAc Kdn(2) ---OR--- Hex(2) HexNAc HexA": "NT=HexNAc(1)Kdn(2);AC=1570;", "Hex(3) HexNAc Me": "NT=Hex(3)HexNAc(1)Me(1);AC=1571;", "Hex(2) HexA Pent Sulf": "NT=Hex(2)HexA(1)Pent(1)Sulf(1);AC=1572;", "HexNAc(2) NeuGc": "NT=HexNAc(2)NeuGc(1);AC=1573;", "Hex(4) Phos": "NT=Hex(4)Phos(1);AC=1575;", "Hex HexNAc NeuAc Sulf": "NT=Hex(1)HexNAc(1)NeuAc(1)Sulf(1);AC=1577;", "Hex HexA HexNAc(2)": "NT=Hex(1)HexA(1)HexNAc(2);AC=1578;", "dHex Hex(2) HexNAc Sulf": "NT=dHex(1)Hex(2)HexNAc(1)Sulf(1);AC=1579;", "dHex HexNAc(3)": "NT=dHex(1)HexNAc(3);AC=1580;", "dHex Hex HexNAc Kdn ---OR--- Hex(2) dHex NeuAc": "NT=dHex(1)Hex(1)HexNAc(1)Kdn(1);AC=1581;", "Hex HexNAc(3)": "NT=Hex(1)HexNAc(3);AC=1582;", "HexNAc(2) NeuAc Sulf": "NT=HexNAc(2)NeuAc(1)Sulf(1);AC=1583;", "dHex(2) Hex(3)": "NT=dHex(2)Hex(3);AC=1584;", "Hex(2) HexA HexNAc Sulf": "NT=Hex(2)HexA(1)HexNAc(1)Sulf(1);AC=1585;", "dHex(2) Hex(2) HexA": "NT=dHex(2)Hex(2)HexA(1);AC=1586;", "dHex Hex HexNAc(2) Sulf": "NT=dHex(1)Hex(1)HexNAc(2)Sulf(1);AC=1587;", "dHex Hex HexNAc NeuAc": "NT=dHex(1)Hex(1)HexNAc(1)NeuAc(1);AC=1588;", "Hex(2) HexNAc(2) Sulf": "NT=Hex(2)HexNAc(2)Sulf(1);AC=1589;", "HexNAc NeuGc(2)": "NT=HexNAc(1)NeuGc(2);AC=1592;", "dHex Hex HexNAc NeuGc ---OR--- Hex(2) HexNAc NeuAc": "NT=dHex(1)Hex(1)HexNAc(1)NeuGc(1);AC=1593;", "dHex(2) Hex(2) HexNAc": "NT=dHex(2)Hex(2)HexNAc(1);AC=1594;", "Hex(2) HexNAc NeuGc": "NT=Hex(2)HexNAc(1)NeuGc(1);AC=1595;", "dHex Hex(3) HexNAc": "NT=dHex(1)Hex(3)HexNAc(1);AC=1596;", "dHex Hex(2) HexA HexNAc": "NT=dHex(1)Hex(2)HexA(1)HexNAc(1);AC=1597;", "Hex HexNAc(3) Sulf": "NT=Hex(1)HexNAc(3)Sulf(1);AC=1598;", "Hex(4) HexNAc": "NT=Hex(4)HexNAc(1);AC=1599;", "Hex HexNAc(2) NeuAc": "NT=Hex(1)HexNAc(2)NeuAc(1);AC=1600;", "Hex HexNAc(2) NeuGc": "NT=Hex(1)HexNAc(2)NeuGc(1);AC=1602;", "Hex(5) Phos": "NT=Hex(5)Phos(1);AC=1604;", "dHex(2) Hex HexNAc Kdn": "NT=dHex(2)Hex(1)HexNAc(1)Kdn(1);AC=1606;", "dHex Hex(3) HexNAc Sulf": "NT=dHex(1)Hex(3)HexNAc(1)Sulf(1);AC=1607;", "dHex Hex HexNAc(3)": "NT=dHex(1)Hex(1)HexNAc(3);AC=1608;", "dHex Hex(2) HexA HexNAc Sulf": "NT=dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1);AC=1609;", "Hex(2) HexNAc(3)": "NT=Hex(2)HexNAc(3);AC=1610;", "Hex HexNAc(2) NeuAc Sulf": "NT=Hex(1)HexNAc(2)NeuAc(1)Sulf(1);AC=1611;", "dHex(2) Hex(4)": "NT=dHex(2)Hex(4);AC=1612;", "dHex(2) HexNAc(2) Kdn": "NT=dHex(2)HexNAc(2)Kdn(1);AC=1614;", "dHex Hex(2) HexNAc(2) Sulf": "NT=dHex(1)Hex(2)HexNAc(2)Sulf(1);AC=1615;", "dHex HexNAc(4)": "NT=dHex(1)HexNAc(4);AC=1616;", "Hex HexNAc NeuAc NeuGc": "NT=Hex(1)HexNAc(1)NeuAc(1)NeuGc(1);AC=1617;", "dHex Hex HexNAc(2) Kdn ---OR--- Hex(2) HexNAc dHex NeuAc": "NT=dHex(1)Hex(1)HexNAc(2)Kdn(1);AC=1618;", "Hex HexNAc NeuGc(2)": "NT=Hex(1)HexNAc(1)NeuGc(2);AC=1619;", "Ac Hex HexNAc NeuAc(2)": "NT=Hex(1)HexNAc(1)NeuAc(2)Ac(1);AC=1620;", "dHex(2) Hex(2) HexA HexNAc": "NT=dHex(2)Hex(2)HexA(1)HexNAc(1);AC=1621;", "dHex Hex HexNAc(3) Sulf": "NT=dHex(1)Hex(1)HexNAc(3)Sulf(1);AC=1622;", "Hex(2) HexA NeuAc Pent Sulf": "NT=Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1);AC=1623;", "dHex Hex HexNAc(2) NeuAc": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(1);AC=1624;", "dHex Hex(3) HexA HexNAc": "NT=dHex(1)Hex(3)HexA(1)HexNAc(1);AC=1625;", "Hex(2) HexNAc(3) Sulf": "NT=Hex(2)HexNAc(3)Sulf(1);AC=1626;", "Hex(5) HexNAc": "NT=Hex(5)HexNAc(1);AC=1627;", "Ac(2) Hex HexNAc NeuAc(2)": "NT=Hex(1)HexNAc(1)NeuAc(2)Ac(2);AC=1630;", "Hex(2) HexNAc(2) NeuGc": "NT=Hex(2)HexNAc(2)NeuGc(1);AC=1631;", "Hex(5) Phos(3)": "NT=Hex(5)Phos(3);AC=1632;", "Hex(6) Phos": "NT=Hex(6)Phos(1);AC=1633;", "dHex Hex(2) HexA HexNAc(2)": "NT=dHex(1)Hex(2)HexA(1)HexNAc(2);AC=1634;", "dHex(2) Hex(3) HexNAc Sulf": "NT=dHex(2)Hex(3)HexNAc(1)Sulf(1);AC=1635;", "Hex HexNAc(3) NeuAc": "NT=Hex(1)HexNAc(3)NeuAc(1);AC=1636;", "dHex(2) Hex HexNAc(3)": "NT=dHex(2)Hex(1)HexNAc(3);AC=1637;", "Hex HexNAc(3) NeuGc": "NT=Hex(1)HexNAc(3)NeuGc(1);AC=1638;", "dHex Hex HexNAc(2) NeuAc Sulf": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1);AC=1639;", "dHex Hex(3) HexA HexNAc Sulf": "NT=dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1);AC=1640;", "dHex Hex HexA HexNAc(3)": "NT=dHex(1)Hex(1)HexA(1)HexNAc(3);AC=1641;", "Hex(2) HexNAc(2) NeuAc Sulf": "NT=Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1642;", "dHex(2) Hex(2) HexNAc(2) Sulf": "NT=dHex(2)Hex(2)HexNAc(2)Sulf(1);AC=1643;", "dHex(2) Hex HexNAc(2) Kdn ---OR--- Hex(2) HexNAc dHex(2) NeuAc": "NT=dHex(2)Hex(1)HexNAc(2)Kdn(1);AC=1644;", "dHex Hex HexNAc(4)": "NT=dHex(1)Hex(1)HexNAc(4);AC=1645;", "Hex(2) HexNAc(4)": "NT=Hex(2)HexNAc(4);AC=1646;", "Hex(2) HexNAc NeuGc(2)": "NT=Hex(2)HexNAc(1)NeuGc(2);AC=1647;", "dHex(2) Hex(4) HexNAc": "NT=dHex(2)Hex(4)HexNAc(1);AC=1648;", "Hex HexNAc(2) NeuAc(2)": "NT=Hex(1)HexNAc(2)NeuAc(2);AC=1649;", "dHex(2) Hex HexNAc(2) NeuAc": "NT=dHex(2)Hex(1)HexNAc(2)NeuAc(1);AC=1650;", "dHex Hex(2) HexNAc(3) Sulf": "NT=dHex(1)Hex(2)HexNAc(3)Sulf(1);AC=1651;", "dHex HexNAc(5)": "NT=dHex(1)HexNAc(5);AC=1652;", "dHex(2) Hex HexNAc(2) NeuGc ---OR--- Hex(2) HexNAc(2) dHex NeuAc ---OR--- Hex HexNAc(3) dHex Kdn": "NT=dHex(2)Hex(1)HexNAc(2)NeuGc(1);AC=1653;", "dHex(3) Hex(2) HexNAc(2)": "NT=dHex(3)Hex(2)HexNAc(2);AC=1654;", "Hex(3) HexNAc(3) Sulf": "NT=Hex(3)HexNAc(3)Sulf(1);AC=1655;", "dHex(2) Hex(2) HexNAc(2) Sulf(2)": "NT=dHex(2)Hex(2)HexNAc(2)Sulf(2);AC=1656;", "dHex Hex(2) HexNAc(2) NeuGc ---OR--- Hex(3) HexNAc(2) NeuAc": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(1);AC=1657;", "dHex Hex HexNAc(3) NeuAc": "NT=dHex(1)Hex(1)HexNAc(3)NeuAc(1);AC=1658;", "Hex(6) Phos(3)": "NT=Hex(6)Phos(3);AC=1659;", "dHex Hex(3) HexA HexNAc(2)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(2);AC=1660;", "dHex Hex HexNAc(3) NeuGc ---OR--- Hex(2) HexNAc(3) NeuAc": "NT=dHex(1)Hex(1)HexNAc(3)NeuGc(1);AC=1661;", "Hex HexNAc(2) NeuAc(2) Sulf": "NT=Hex(1)HexNAc(2)NeuAc(2)Sulf(1);AC=1662;", "dHex(2) Hex(3) HexA HexNAc Sulf": "NT=dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1);AC=1663;", "Hex HexNAc NeuAc(3)": "NT=Hex(1)HexNAc(1)NeuAc(3);AC=1664;", "Hex(2) HexNAc(3) NeuGc": "NT=Hex(2)HexNAc(3)NeuGc(1);AC=1665;", "dHex Hex(2) HexNAc(2) NeuAc Sulf": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1666;", "dHex(3) Hex HexNAc(2) Kdn": "NT=dHex(3)Hex(1)HexNAc(2)Kdn(1);AC=1667;", "dHex(2) Hex(3) HexNAc(2) Sulf": "NT=dHex(2)Hex(3)HexNAc(2)Sulf(1);AC=1668;", "dHex(2) Hex(2) HexNAc(2) Kdn": "NT=dHex(2)Hex(2)HexNAc(2)Kdn(1);AC=1669;", "dHex(2) Hex(2) HexA HexNAc(2) Sulf": "NT=dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1);AC=1670;", "dHex Hex(2) HexNAc(4)": "NT=dHex(1)Hex(2)HexNAc(4);AC=1671;", "Hex HexNAc NeuGc(3)": "NT=Hex(1)HexNAc(1)NeuGc(3);AC=1672;", "dHex Hex HexNAc(3) NeuAc Sulf": "NT=dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1);AC=1673;", "dHex Hex(3) HexA HexNAc(2) Sulf": "NT=dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1);AC=1674;", "dHex Hex HexNAc(2) NeuAc(2)": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(2);AC=1675;", "dHex(3) HexNAc(3) Kdn": "NT=dHex(3)HexNAc(3)Kdn(1);AC=1676;", "Hex(2) HexNAc(3) NeuAc Sulf": "NT=Hex(2)HexNAc(3)NeuAc(1)Sulf(1);AC=1678;", "dHex(2) Hex(2) HexNAc(3) Sulf": "NT=dHex(2)Hex(2)HexNAc(3)Sulf(1);AC=1679;", "dHex(2) HexNAc(5)": "NT=dHex(2)HexNAc(5);AC=1680;", "Hex(2) HexNAc(2) NeuAc(2)": "NT=Hex(2)HexNAc(2)NeuAc(2);AC=1681;", "dHex(2) Hex(2) HexNAc(2) NeuAc ---OR--- Hex HexNAc(3) dHex(2) Kdn": "NT=dHex(2)Hex(2)HexNAc(2)NeuAc(1);AC=1682;", "dHex Hex(3) HexNAc(3) Sulf": "NT=dHex(1)Hex(3)HexNAc(3)Sulf(1);AC=1683;", "dHex(2) Hex(2) HexNAc(2) NeuGc ---OR--- Hex(3) HexNAc(2) dHex NeuAc ---OR--- Hex(2) HexNAc(3) dHex Kdn": "NT=dHex(2)Hex(2)HexNAc(2)NeuGc(1);AC=1684;", "Hex(2) HexNAc(5)": "NT=Hex(2)HexNAc(5);AC=1685;", "dHex Hex(3) HexNAc(2) NeuGc": "NT=dHex(1)Hex(3)HexNAc(2)NeuGc(1);AC=1686;", "Hex HexNAc(3) NeuAc(2)": "NT=Hex(1)HexNAc(3)NeuAc(2);AC=1687;", "dHex Hex(2) HexNAc(3) NeuAc": "NT=dHex(1)Hex(2)HexNAc(3)NeuAc(1);AC=1688;", "dHex(3) Hex(2) HexNAc(3)": "NT=dHex(3)Hex(2)HexNAc(3);AC=1689;", "Hex(7) Phos(3)": "NT=Hex(7)Phos(3);AC=1690;", "dHex Hex(4) HexA HexNAc(2)": "NT=dHex(1)Hex(4)HexA(1)HexNAc(2);AC=1691;", "Hex(3) HexNAc(3) NeuAc ---OR--- Hex(2) HexNAc(3) dHex NeuGc ---OR--- Hex(2) HexNAc(4) Kdn": "NT=Hex(3)HexNAc(3)NeuAc(1);AC=1692;", "dHex Hex(3) HexA(2) HexNAc(2)": "NT=dHex(1)Hex(3)HexA(2)HexNAc(2);AC=1693;", "Hex(2) HexNAc(2) NeuAc(2) Sulf": "NT=Hex(2)HexNAc(2)NeuAc(2)Sulf(1);AC=1694;", "dHex(2) Hex(2) HexNAc(2) NeuAc Sulf": "NT=dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1695;", "Hex(3) HexNAc(3) NeuGc": "NT=Hex(3)HexNAc(3)NeuGc(1);AC=1696;", "dHex(4) Hex HexNAc(2) Kdn": "NT=dHex(4)Hex(1)HexNAc(2)Kdn(1);AC=1697;", "dHex(3) Hex(2) HexNAc(2) Kdn": "NT=dHex(3)Hex(2)HexNAc(2)Kdn(1);AC=1698;", "dHex(3) Hex(2) HexA HexNAc(2) Sulf": "NT=dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1);AC=1699;", "Hex(2) HexNAc(4) NeuAc": "NT=Hex(2)HexNAc(4)NeuAc(1);AC=1700;", "dHex(2) Hex(2) HexNAc(4)": "NT=dHex(2)Hex(2)HexNAc(4);AC=1701;", "dHex(2) Hex(3) HexA HexNAc(2) Sulf": "NT=dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1);AC=1702;", "dHex(4) HexNAc(3) Kdn": "NT=dHex(4)HexNAc(3)Kdn(1);AC=1703;", "Hex(2) HexNAc NeuGc(3)": "NT=Hex(2)HexNAc(1)NeuGc(3);AC=1705;", "dHex(4) Hex HexNAc Kdn(2)": "NT=dHex(4)Hex(1)HexNAc(1)Kdn(2);AC=1706;", "dHex Hex(2) HexNAc(3) NeuAc Sulf": "NT=dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1);AC=1707;", "dHex Hex(2) HexNAc(2) NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(2);AC=1708;", "dHex(3) Hex HexNAc(3) Kdn": "NT=dHex(3)Hex(1)HexNAc(3)Kdn(1);AC=1709;", "Hex(3) HexNAc(3) NeuAc Sulf": "NT=Hex(3)HexNAc(3)NeuAc(1)Sulf(1);AC=1711;", "Hex(3) HexNAc(2) NeuAc(2)": "NT=Hex(3)HexNAc(2)NeuAc(2);AC=1712;", "Hex(3) HexNAc(3) NeuGc Sulf": "NT=Hex(3)HexNAc(3)NeuGc(1)Sulf(1);AC=1713;", "dHex Hex(2) HexNAc(2) NeuGc(2)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(2);AC=1714;", "dHex(2) Hex(3) HexNAc(2) NeuGc ---OR--- Hex(4) HexNAc(2) dHex NeuAc": "NT=dHex(2)Hex(3)HexNAc(2)NeuGc(1);AC=1715;", "dHex Hex(3) HexA HexNAc(3) Sulf": "NT=dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1);AC=1716;", "Hex(2) HexNAc(3) NeuAc(2)": "NT=Hex(2)HexNAc(3)NeuAc(2);AC=1717;", "dHex(2) Hex(2) HexNAc(3) NeuAc": "NT=dHex(2)Hex(2)HexNAc(3)NeuAc(1);AC=1718;", "dHex(4) Hex(2) HexNAc(3)": "NT=dHex(4)Hex(2)HexNAc(3);AC=1719;", "Hex(2) HexNAc(3) NeuAc NeuGc": "NT=Hex(2)HexNAc(3)NeuAc(1)NeuGc(1);AC=1720;", "dHex(2) Hex(2) HexNAc(3) NeuGc ---OR--- Hex(3) HexNAc(3) dHex NeuAc ---OR--- Hex(2) HexNAc(4) dHex Kdn": "NT=dHex(2)Hex(2)HexNAc(3)NeuGc(1);AC=1721;", "dHex(3) Hex(3) HexNAc(3)": "NT=dHex(3)Hex(3)HexNAc(3);AC=1722;", "Hex(8) Phos(3)": "NT=Hex(8)Phos(3);AC=1723;", "dHex Hex(2) HexNAc(2) NeuAc(2) Sulf": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1);AC=1724;", "Hex(2) HexNAc(3) NeuGc(2)": "NT=Hex(2)HexNAc(3)NeuGc(2);AC=1725;", "dHex(4) Hex(2) HexNAc(2) Kdn": "NT=dHex(4)Hex(2)HexNAc(2)Kdn(1);AC=1726;", "dHex Hex(2) HexNAc(4) NeuAc": "NT=dHex(1)Hex(2)HexNAc(4)NeuAc(1);AC=1727;", "dHex(3) Hex(2) HexNAc(4)": "NT=dHex(3)Hex(2)HexNAc(4);AC=1728;", "Hex HexNAc NeuGc(4)": "NT=Hex(1)HexNAc(1)NeuGc(4);AC=1729;", "dHex(4) Hex HexNAc(3) Kdn": "NT=dHex(4)Hex(1)HexNAc(3)Kdn(1);AC=1730;", "Hex(4) HexNAc(4) Sulf(2)": "NT=Hex(4)HexNAc(4)Sulf(2);AC=1732;", "dHex(3) Hex(2) HexNAc(3) Kdn ---OR--- Hex(3) HexNAc(2) dHex(3) NeuAc": "NT=dHex(3)Hex(2)HexNAc(3)Kdn(1);AC=1733;", "dHex(2) Hex(2) HexNAc(5)": "NT=dHex(2)Hex(2)HexNAc(5);AC=1735;", "dHex(2) Hex(3) HexA HexNAc(3) Sulf": "NT=dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1);AC=1736;", "dHex Hex(4) HexA HexNAc(3) Sulf": "NT=dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1);AC=1737;", "Hex(3) HexNAc(3) NeuAc(2)": "NT=Hex(3)HexNAc(3)NeuAc(2);AC=1738;", "dHex(2) Hex(3) HexNAc(3) NeuAc ---OR--- Hex(2) HexNAc(4) dHex(2) Kdn": "NT=dHex(2)Hex(3)HexNAc(3)NeuAc(1);AC=1739;", "dHex(4) Hex(3) HexNAc(3)": "NT=dHex(4)Hex(3)HexNAc(3);AC=1740;", "Hex(9) Phos(3)": "NT=Hex(9)Phos(3);AC=1742;", "dHex(2) HexNAc(7)": "NT=dHex(2)HexNAc(7);AC=1743;", "Hex(2) HexNAc NeuGc(4)": "NT=Hex(2)HexNAc(1)NeuGc(4);AC=1744;", "Hex(3) HexNAc(3) NeuAc(2) Sulf": "NT=Hex(3)HexNAc(3)NeuAc(2)Sulf(1);AC=1745;", "dHex(2) Hex(3) HexNAc(5)": "NT=dHex(2)Hex(3)HexNAc(5);AC=1746;", "dHex Hex(2) HexNAc(2) NeuGc(3)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(3);AC=1747;", "dHex(2) Hex(4) HexA HexNAc(3) Sulf": "NT=dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1);AC=1748;", "Hex(2) HexNAc(3) NeuAc(3)": "NT=Hex(2)HexNAc(3)NeuAc(3);AC=1749;", "dHex Hex(3) HexNAc(3) NeuAc(2)": "NT=dHex(1)Hex(3)HexNAc(3)NeuAc(2);AC=1750;", "dHex(3) Hex(3) HexNAc(3) NeuAc": "NT=dHex(3)Hex(3)HexNAc(3)NeuAc(1);AC=1751;", "Hex(2) HexNAc(3) NeuGc(3)": "NT=Hex(2)HexNAc(3)NeuGc(3);AC=1752;", "Hex(10) Phos(3)": "NT=Hex(10)Phos(3);AC=1753;", "dHex Hex(2) HexNAc(4) NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(4)NeuAc(2);AC=1754;", "Hex HexNAc NeuGc(5)": "NT=Hex(1)HexNAc(1)NeuGc(5);AC=1755;", "Hex(4) HexNAc(4) NeuAc Sulf(2)": "NT=Hex(4)HexNAc(4)NeuAc(1)Sulf(2);AC=1756;", "Hex(4) HexNAc(4) NeuGc Sulf(2)": "NT=Hex(4)HexNAc(4)NeuGc(1)Sulf(2);AC=1757;", "dHex(2) Hex(3) HexNAc(3) NeuAc(2)": "NT=dHex(2)Hex(3)HexNAc(3)NeuAc(2);AC=1758;", "Hex(4) HexNAc(4) NeuAc Sulf(3)": "NT=Hex(4)HexNAc(4)NeuAc(1)Sulf(3);AC=1759;", "dHex(2) Hex(2) HexNAc(2)": "NT=dHex(2)Hex(2)HexNAc(2);AC=1760;", "dHex Hex(3) HexNAc(2)": "NT=dHex(1)Hex(3)HexNAc(2);AC=1761;", "dHex Hex(2) HexNAc(3)": "NT=dHex(1)Hex(2)HexNAc(3);AC=1762;", "Hex(3) HexNAc(3)": "NT=Hex(3)HexNAc(3);AC=1763;", "dHex Hex(3) HexNAc(2) Sulf": "NT=dHex(1)Hex(3)HexNAc(2)Sulf(1);AC=1764;", "dHex(2) Hex(3) HexNAc(2)": "NT=dHex(2)Hex(3)HexNAc(2);AC=1765;", "dHex Hex(4) HexNAc(2)": "NT=dHex(1)Hex(4)HexNAc(2);AC=1766;", "dHex(2) Hex(2) HexNAc(3)": "NT=dHex(2)Hex(2)HexNAc(3);AC=1767;", "dHex Hex(3) HexNAc(3)": "NT=dHex(1)Hex(3)HexNAc(3);AC=1768;", "Hex(4) HexNAc(3)": "NT=Hex(4)HexNAc(3);AC=1769;", "dHex(2) Hex(4) HexNAc(2)": "NT=dHex(2)Hex(4)HexNAc(2);AC=1770;", "dHex(2) Hex(3) HexNAc(3)": "NT=dHex(2)Hex(3)HexNAc(3);AC=1771;", "A3": "NT=Hex(3)HexNAc(5);AC=1772;", "Hex(4) HexNAc(3) NeuAc ---OR--- Hex(3) HexNAc(4) Kdn": "NT=Hex(4)HexNAc(3)NeuAc(1);AC=1773;", "dHex(2) Hex(3) HexNAc(4)": "NT=dHex(2)Hex(3)HexNAc(4);AC=1774;", "dHex Hex(3) HexNAc(5)": "NT=dHex(1)Hex(3)HexNAc(5);AC=1775;", "A4": "NT=Hex(3)HexNAc(6);AC=1776;", "Hex(4) HexNAc(4) NeuAc": "NT=Hex(4)HexNAc(4)NeuAc(1);AC=1777;", "dHex(2) Hex(4) HexNAc(4) ---OR--- Hex(4) HexNAc(4) dHex Pent Me": "NT=dHex(2)Hex(4)HexNAc(4);AC=1778;", "Hex(6) HexNAc(4)": "NT=Hex(6)HexNAc(4);AC=1779;", "Hex(5) HexNAc(5)": "NT=Hex(5)HexNAc(5);AC=1780;", "dHex Hex(3) HexNAc(6)": "NT=dHex(1)Hex(3)HexNAc(6);AC=1781;", "dHex Hex(4) HexNAc(4) NeuAc ---OR--- Hex(3) HexNAc(5) dHex Kdn": "NT=dHex(1)Hex(4)HexNAc(4)NeuAc(1);AC=1782;", "dHex(3) Hex(4) HexNAc(4)": "NT=dHex(3)Hex(4)HexNAc(4);AC=1783;", "dHex Hex(3) HexNAc(5) NeuAc": "NT=dHex(1)Hex(3)HexNAc(5)NeuAc(1);AC=1784;", "dHex(2) Hex(4) HexNAc(5)": "NT=dHex(2)Hex(4)HexNAc(5);AC=1785;", "Ac Hex HexNAc NeuAc": "NT=Hex(1)HexNAc(1)NeuAc(1)Ac(1);AC=1786;", "13C(2) 15N(2)": "NT=Label:13C(2)15N(2);AC=1787;", "Ammonium-quenched monolink of DSS/BS3 crosslinker": "NT=Xlink:DSS[155];AC=1789;", "SUMOylation by Giardia lamblia": "NT=NQIGG;AC=1799;", "Fluorescein-tyramine adduct by peroxidase activity": "NT=Fluorescein-tyramine;AC=1801;", "transamidation of glycine ethyl ester to glutamine": "NT=GEE;AC=1824;", "Simulate peptide-RNA conjugates": "NT=RNPXL;AC=1825;", "Pyro-Glu from E + Methylation": "NT=Glu->pyro-Glu+Methyl;AC=1826;", "Pyro-Glu from E + Methylation Medium": "NT=Glu->pyro-Glu+Methyl:2H(2)13C(1);AC=1827;", "LeumethylArgGlyGly": "NT=LRGG+methyl;AC=1828;", "LeudimethylArgGlyGly": "NT=LRGG+dimethyl;AC=1829;", "Biotin-Phenol": "NT=Biotin-tyramide;AC=1830;", "tris adduct causes 104 Da addition at asparagine-succinimide intermediate": "NT=Tris;AC=1831;", "Iodoacetamide derivative of stilbene (reaction product with thiol)": "NT=IASD;AC=1832;", "NP-40 synthetic polymer terminus": "NT=NP40;AC=1833;", "Tween 20 synthetic polymer terminus": "NT=Tween20;AC=1834;", "Tween 80 synthetic polymer terminus": "NT=Tween80;AC=1835;", "Triton synthetic polymer terminus": "NT=Triton;AC=1836;", "Brij 35 synthetic polymer terminus": "NT=Brij35;AC=1837;", "Brij 58 synthetic polymer terminus": "NT=Brij58;AC=1838;", "beta-Funaltrexamine": "NT=betaFNA;AC=1839;", "Fucosylated biantennary + 2 alphaGal": "NT=dHex(1)Hex(7)HexNAc(4);AC=1840;", "EZ-Link Sulfo-NHS-SS-Biotin": "NT=Biotin:Thermo-21328;AC=1841;", "disuccinimidyl sulfoxide CID cleavable cross-link": "NT=Xlink:DSSO;AC=1842;", "Cytidine monophosphate": "NT=PhosphoCytidine;AC=1843;", "EGS cross-linker": "NT=Xlink:EGS;AC=1844;", "Azidophenylalanine": "NT=AzidoF;AC=1845;", "Cys alkylation by dimethylaminoethyl halide": "NT=Dimethylaminoethyl;AC=1846;", "Glutarylation": "NT=Gluratylation;AC=1848;", "2-hydroxyisobutyrylation": "NT=hydroxyisobutyryl;AC=1849;", "S-Methyl Methyl phosphorothioate": "NT=MeMePhosphorothioate;AC=1868;", "Replacement of 3 protons by iron": "NT=Cation:Fe[III];AC=1870;", "DTT adduct of cysteine": "NT=DTT;AC=1871;", "Sulfenic Acid specific probe": "NT=DYn-2;AC=1872;", "Acetone chemical artifact": "NT=MesitylOxide;AC=1873;", "formaldehyde induced modifications": "NT=methylol;AC=1875;", "disuccinimidyl suberate (DSS)": "NT=Xlink:DSS;AC=1876;", "Tris-quenched monolink of DSS/BS3 crosslinker": "NT=Xlink:DSS[259];AC=1877;", "Water-quenched monolink of DSSO crosslinker": "NT=Xlink:DSSO[176];AC=1878;", "Ammonia-quenched monolink of DSSO crosslinker": "NT=Xlink:DSSO[175];AC=1879;", "Tris-quenched monolink of DSSO crosslinker": "NT=Xlink:DSSO[279];AC=1880;", "Alkene fragment of DSSO crosslinker": "NT=Xlink:DSSO[54];AC=1881;", "Thiol fragment of DSSO crosslinker": "NT=Xlink:DSSO[86];AC=1882;", "Sulfenic acid fragment of DSSO crosslinker": "NT=Xlink:DSSO[104];AC=1883;", "disuccinimidyl dibutyric urea CID cleavable cross-link": "NT=Xlink:BuUrBu;AC=1884;", "BuUr fragment of BuUrBu crosslinker": "NT=Xlink:BuUrBu[111];AC=1885;", "Bu fragment of BuUrBu crosslinker": "NT=Xlink:BuUrBu[85];AC=1886;", "Ammonia quenched monolink of BuUrBu crosslinker": "NT=Xlink:BuUrBu[213];AC=1887;", "Water quenched monolink of BuUrBu crosslinker": "NT=Xlink:BuUrBu[214];AC=1888;", "Tris quenched monolink of BuUrBu crosslinker": "NT=Xlink:BuUrBu[317];AC=1889;", "dimethyl 3,3\\'-dithiobispropionimidate": "NT=Xlink:DTBP;AC=1891;", "Disuccinimidyl tartrate crosslinker": "NT=Xlink:DST;AC=1892;", "dithiobis[succinimidylpropionate]": "NT=Xlink:DTSSP;AC=1893;", "succinimidyl 4-[N-maleimidomethyl]cyclohexane-1-carboxylate": "NT=Xlink:SMCC;AC=1895;", "Intact DSSO crosslinker": "NT=Xlink:DSSO[158];AC=1896;", "Intact EGS cross-linker": "NT=Xlink:EGS[226];AC=1897;", "Intact DSS/BS3 crosslinker": "NT=Xlink:DSS[138];AC=1898;", "Intact BuUrBu crosslinker": "NT=Xlink:BuUrBu[196];AC=1899;", "Intact DTBP crosslinker": "NT=Xlink:DTBP[172];AC=1900;", "Intact DST crosslinker": "NT=Xlink:DST[114];AC=1901;", "Intact DSP/DTSSP crosslinker": "NT=Xlink:DTSSP[174];AC=1902;", "Intact SMCC cross-link": "NT=Xlink:SMCC[219];AC=1903;", "Intact BS2-G crosslinker": "NT=Xlink:BS2G[96];AC=1905;", "Ammonium-quenched monolink of BS2-G crosslinker": "NT=Xlink:BS2G[113];AC=1906;", "Water-quenched monolink of BS2-G crosslinker": "NT=Xlink:BS2G[114];AC=1907;", "Tris-quenched monolink of BS2-G crosslinker": "NT=Xlink:BS2G[217];AC=1908;", "bis[sulfosuccinimidyl] glutarate": "NT=Xlink:BS2G;AC=1909;", "Replacement of 3 protons by aluminium": "NT=Cation:Al[III];AC=1910;", "Ammonia quenched monolink of DMP crosslinker": "NT=Xlink:DMP[139];AC=1911;", "Intact DMP crosslinker": "NT=Xlink:DMP[122];AC=1912;", "glyoxal-derived AGE": "NT=glyoxalAGE;AC=1913;", "Methionine oxidation to aspartic semialdehyde": "NT=Met->AspSA;AC=1914;", "In Bachi as Formylaspargine (typo?)": "NT=Formylasparagine;AC=1917;", "aldehyde and ketone modifications": "NT=Carbonyl;AC=1918;", "adduction of aflatoxin B1 Dialdehyde to lysine": "NT=AFB1_Dialdehyde;AC=1920;", "Proline oxidation to 5-hydroxy-2-aminovaleric acid": "NT=Pro->HAVA;AC=1922;", "Tryptophan oxidation to beta-unsaturated-2,4-bis-tryptophandione": "NT=Delta:H(-4)O(2);AC=1923;", "Tryptophan oxidation to hydroxy-bis-tryptophandione": "NT=Delta:H(-4)O(3);AC=1924;", "Tryptophan oxidation to dihydroxy-N-formaylkynurenine": "NT=Delta:O(4);AC=1925;", "methylglyoxal-derived carboxyethyllysine": "NT=Delta:H(4)C(3)O(2);AC=1926;", "methylglyoxal-derived argpyrimidine": "NT=Delta:H(4)C(5)O(1);AC=1927;", "crotonaldehyde-derived dimethyl-FDP-lysine": "NT=Delta:H(10)C(8)O(1);AC=1928;", "methylglyoxal-derived tetrahydropyrimidine": "NT=Delta:H(6)C(7)O(4);AC=1929;", "Pent HexNAc": "NT=Pent(1)HexNAc(1);AC=1931;", "Hex(2) O(3) S": "NT=Hex(2)Sulf(1);AC=1932;", "Hex:1 Pent:2 Me:1": "NT=Hex(1)Pent(2)Me(1);AC=1933;", "HexNAc(2) Sulf": "NT=HexNAc(2)Sulf(1);AC=1934;", "Hex Pent(3) Me": "NT=Hex(1)Pent(3)Me(1);AC=1935;", "Hex(2) Pent(2)": "NT=Hex(2)Pent(2);AC=1936;", "Hex(2) Pent(2) Me": "NT=Hex(2)Pent(2)Me(1);AC=1937;", "Hex(4) HexA": "NT=Hex(4)HexA(1);AC=1938;", "Hex(2) HexNAc Pent HexA": "NT=Hex(2)HexNAc(1)Pent(1)HexA(1);AC=1939;", "Hex(3) HexNAc HexA": "NT=Hex(3)HexNAc(1)HexA(1);AC=1940;", "Hex HexNAc(2) dHex(2) Sulf": "NT=Hex(1)HexNAc(2)dHex(2)Sulf(1);AC=1941;", "HexA(2) HexNAc(3)": "NT=HexA(2)HexNAc(3);AC=1942;", "dHex Hex(4) HexA": "NT=dHex(1)Hex(4)HexA(1);AC=1943;", "Hex(5) HexA": "NT=Hex(5)HexA(1);AC=1944;", "Hex(4) HexA HexNAc": "NT=Hex(4)HexA(1)HexNAc(1);AC=1945;", "dHex(3) Hex(3) HexNAc": "NT=dHex(3)Hex(3)HexNAc(1);AC=1946;", "Hex(6) HexNAc": "NT=Hex(6)HexNAc(1);AC=1947;", "Sulf dHex Hex HexNAc(4)": "NT=Hex(1)HexNAc(4)dHex(1)Sulf(1);AC=1948;", "dHex Hex(2) HexNAc NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(1)NeuAc(2);AC=1949;", "dHex(3) Hex(3) HexNAc(2)": "NT=dHex(3)Hex(3)HexNAc(2);AC=1950;", "dHex(2) Hex HexNAc(4) Sulf": "NT=dHex(2)Hex(1)HexNAc(4)Sulf(1);AC=1951;", "dHex Hex(2) HexNAc(4) Sulf(2)": "NT=dHex(1)Hex(2)HexNAc(4)Sulf(2);AC=1952;", "Sulf dHex(2) Hex(3) HexNAc(3)": "NT=dHex(2)Hex(3)HexNAc(3)Sulf(1);AC=1954;", "Me dHex(2) Hex(5) HexNAc(2)": "NT=dHex(2)Hex(5)HexNAc(2)Me(1);AC=1955;", "Sulf(2) dHex(2) Hex(2) HexNAc(4)": "NT=dHex(2)Hex(2)HexNAc(4)Sulf(2);AC=1956;", "Hex(9) HexNAc": "NT=Hex(9)HexNAc(1);AC=1957;", "dHex(3) Hex(2) HexNAc(4) Sulf(2)": "NT=dHex(3)Hex(2)HexNAc(4)Sulf(2);AC=1958;", "Hex(4) HexNAc(4) NeuGc": "NT=Hex(4)HexNAc(4)NeuGc(1);AC=1959;", "dHex(4) Hex(3) HexNAc(2) NeuAc(1)": "NT=dHex(4)Hex(3)HexNAc(2)NeuAc(1);AC=1960;", "Hex(3) HexNAc(5) NeuAc(1)": "NT=Hex(3)HexNAc(5)NeuAc(1);AC=1961;", "Hex(10) HexNAc(1)": "NT=Hex(10)HexNAc(1);AC=1962;", "dHex Hex(8) HexNAc(2)": "NT=dHex(1)Hex(8)HexNAc(2);AC=1963;", "Hex(3) HexNAc(4) NeuAc(2)": "NT=Hex(3)HexNAc(4)NeuAc(2);AC=1964;", "dHex(2) Hex(3) HexNAc(4) NeuAc": "NT=dHex(2)Hex(3)HexNAc(4)NeuAc(1);AC=1965;", "dHex(2) Hex(2) HexNAc(6) Sulf": "NT=dHex(2)Hex(2)HexNAc(6)Sulf(1);AC=1966;", "Hex(5) HexNAc(4) NeuAc Ac": "NT=Hex(5)HexNAc(4)NeuAc(1)Ac(1);AC=1967;", "Hex(3) HexNAc(3) NeuAc(3)": "NT=Hex(3)HexNAc(3)NeuAc(3);AC=1968;", "Hex(5) HexNAc(4) NeuAc Ac(2)": "NT=Hex(5)HexNAc(4)NeuAc(1)Ac(2);AC=1969;", "Unidentified modification of 162.1258 found in open search": "NT=Unknown:162;AC=1970;", "Unidentified modification of 176.7462 found in open search": "NT=Unknown:177;AC=1971;", "Unidentified modification of 210.1616 found in open search": "NT=Unknown:210;AC=1972;", "Unidentified modification of 216.1002 found in open search": "NT=Unknown:216;AC=1973;", "Unidentified modification of 234.0742 found in open search": "NT=Unknown:234;AC=1974;", "Unidentified modification of 248.1986 found in open search": "NT=Unknown:248;AC=1975;", "Unidentified modification of 249.981 found in open search": "NT=Unknown:250;AC=1976;", "Unidentified modification of 301.9864 found in open search": "NT=Unknown:302;AC=1977;", "Unidentified modification of 306.0952 found in open search": "NT=Unknown:306;AC=1978;", "Unidentified modification of 420.0506 found in open search": "NT=Unknown:420;AC=1979;", "O-diethylphosphothione": "NT=Diethylphosphothione;AC=1986;", "O-dimethylphosphothione": "NT=Dimethylphosphothione;AC=1987;", "O-methylphosphothione": "NT=monomethylphosphothione;AC=1989;", "Ubiquitin D (FAT10) leaving after chymotrypsin digestion Cys-Ile-Gly-Gly": "NT=CIGG;AC=1990;", "Ubiquitin D (FAT10) leaving after trypsin digestion Gly-Asn-Leu-Leu-Phe-Leu-Ala-Cys-Tyr-Cys-Ile-Gly-Gly": "NT=GNLLFLACYCIGG;AC=1991;", "5-glutamyl serotonin": "NT=serotonylation;AC=1992;", "heavy tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative": "NT=TMPP-Ac:13C(9);AC=1993;", "DST crosslinker cleaved by sodium periodate": "NT=Xlink:DST[56];AC=1999;", "NHS-Diazirine crosslinker": "NT=Xlink:SDA;AC=2000;", "carbobenzoxy-L-glutaminyl-glycine": "NT=ZQG;AC=2001;", "O-Dichloroethylphosphate": "NT=Haloxon;AC=2006;", "S-methyl amino phosphinate": "NT=Methamidophos-S;AC=2007;", "O-methyl amino phosphinate": "NT=Methamidophos-O;AC=2008;", "Loss of O2; nitro photochemical decomposition": "NT=Nitrene;AC=2014;", "Super Heavy Tandem Mass Tag": "NT=shTMT;AC=2015;", "TMTpro 16plex Tandem Mass Tag": "NT=TMTpro;AC=2016;", "Native TMTpro Tandem Mass Tag": "NT=TMTpro_zero;AC=2017;", "carbodiimide crosslinker": "NT=Xlink:EDC;AC=2018;", "Intact disulfide bridge": "NT=Xlink:Disulfide;AC=2020;", "Glycosylation of Serine/Threonine residues with KDO": "NT=Ser/Thr-KDO;AC=2022;", "andrographolide with the loss of H2O": "NT=Andro-H2O;AC=2025;", "Isopeptide bond formation with loss of ammonia": "NT=Xlink:KQisopeptide;AC=2026;", "Photo-induced histidine adduct": "NT=His+O(2);AC=2027;", "A3G3S3": "NT=Hex(6)HexNAc(5)NeuAc(3);AC=2028;", "A4G4": "NT=Hex(7)HexNAc(6);AC=2029;", "Photo-induced Methionine Adduct": "NT=Met+O(2);AC=2033;", "Photo-induced Glycine Adduct": "NT=Gly+O(2);AC=2034;", "Photo-induced Proline adduct": "NT=Pro+O(2);AC=2035;", "Photo-induced Lysine adduct": "NT=Lys+O(2);AC=2036;", "Photo-induced Glutamate adduct": "NT=Glu+O(2);AC=2037;", "addition of lophotoxin to tyrosine": "NT=LTX+Lophotoxin;AC=2039;", "MBS_233p24 plus peptide 1250p53": "NT=MBS+peptide;AC=2040;", "3-hydroxybenzyl phosphate": "NT=3-hydroxybenzyl-phosphate;AC=2041;", "phenyl phosphate": "NT=phenyl-phosphate;AC=2042;", "RNA-protein UVC-crosslinked, hydrofluoride-digested uridine adduct": "NT=RBS-ID_Uridine;AC=2044;", "Super Heavy TMTpro": "NT=shTMTpro;AC=2050;", "Intact DADPS Biotin Alkyne tag": "NT=Biotin:Aha-DADPS;AC=2052;", "Intact PC Biotin Alkyne tag": "NT=Biotin:Aha-PC;AC=2053;", "RNA-protein UVA-crosslinked, hydrofluoride-digested 4-thiouridine adduct": "NT=pRBS-ID_4-thiouridine;AC=2054;", "RNA-protein UVA-crosslinked, hydrofluoride-digested 6-thioguanosine adduct": "NT=pRBS-ID_6-thioguanosine;AC=2055;", "Iodoacetamido-LC-Phosphonic Acid derivative": "NT=6C-CysPAT;AC=2057;", "Intact DSPP/TBDSPP crosslinker": "NT=Xlink:DSPP[210];AC=2058;", "Water-quenched monolink of DSPP/TBDSPP crosslinker": "NT=Xlink:DSPP[228];AC=2059;", "Tris-quenched monolink of DSPP/TBDSPP crosslinker": "NT=Xlink:DSPP[331];AC=2060;", "Ammonia-quenched monolink of DSPP/TBDSPP crosslinker": "NT=Xlink:DSPP[226];AC=2061;", "desthiobiotinylation of cysteine with DBIA probe": "NT=DBIA;AC=2062;", "Monomodification of N\u03b3-propargyl-L-Gln probe with clicked desthiobiotin-azide": "NT=Mono_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2067;", "Dimodification of L-Glu and N\u03b3-propargyl-L-Gln probe with clicked desthiobiotin-azide": "NT=Di_L-Glu_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2068;", "Dimodification of L-Gln and N\u03b3-propargyl-L-Gln probe with clicked desthiobiotin-azide": "NT=Di_L-Gln_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2069;", "Monomodification with glutamine": "NT=L-Gln;AC=2070;", "Glyceroylation": "NT=Glyceroyl;AC=2072;", "probe; AMP analogon": "NT=N6pAMP;AC=2073;", "Dabcyl C2 Maleimide": "NT=DabMal;AC=2074;", "Thiol blocking reagent": "NT=NBF;AC=2079;", "Dimedone-Based Chemical Probes": "NT=DCP;AC=2080;", "Ethynlation of cysteine residues": "NT=Ethynylation;AC=2081;", \ No newline at end of file diff --git a/.history/unimod_dict_20240927142133.json b/.history/unimod_dict_20240927142133.json new file mode 100644 index 0000000..83a5ece --- /dev/null +++ b/.history/unimod_dict_20240927142133.json @@ -0,0 +1 @@ +{"Acetyl": "NT=Acetyl;AC=1;", "Amidated": "NT=Amidated;AC=2;", "Biotin": "NT=Biotin;AC=3;", "Carbamidomethyl": "NT=Carbamidomethyl;AC=4;", "Carbamyl": "NT=Carbamyl;AC=5;", "Carboxymethyl": "NT=Carboxymethyl;AC=6;", "Deamidated": "NT=Deamidated;AC=7;", "ICAT-G": "NT=ICAT-G;AC=8;", "ICAT-G:2H(8)": "NT=ICAT-G:2H(8);AC=9;", "Met->Hse": "NT=Met->Hse;AC=10;", "Met->Hsl": "NT=Met->Hsl;AC=11;", "ICAT-D:2H(8)": "NT=ICAT-D:2H(8);AC=12;", "ICAT-D": "NT=ICAT-D;AC=13;", "NIPCAM": "NT=NIPCAM;AC=17;", "PEO-Iodoacetyl-LC-Biotin": "NT=PEO-Iodoacetyl-LC-Biotin;AC=20;", "Phospho": "NT=Phospho;AC=21;", "Dehydrated": "NT=Dehydrated;AC=23;", "Propionamide": "NT=Propionamide;AC=24;", "Pyridylacetyl": "NT=Pyridylacetyl;AC=25;", "Pyro-carbamidomethyl": "NT=Pyro-carbamidomethyl;AC=26;", "Glu->pyro-Glu": "NT=Glu->pyro-Glu;AC=27;", "Gln->pyro-Glu": "NT=Gln->pyro-Glu;AC=28;", "SMA": "NT=SMA;AC=29;", "Cation:Na": "NT=Cation:Na;AC=30;", "Pyridylethyl": "NT=Pyridylethyl;AC=31;", "Methyl": "NT=Methyl;AC=34;", "Oxidation": "NT=Oxidation;AC=35;", "Dimethyl": "NT=Dimethyl;AC=36;", "Trimethyl": "NT=Trimethyl;AC=37;", "Methylthio": "NT=Methylthio;AC=39;", "Sulfo": "NT=Sulfo;AC=40;", "Hex": "NT=Hex;AC=41;", "Lipoyl": "NT=Lipoyl;AC=42;", "HexNAc": "NT=HexNAc;AC=43;", "Farnesyl": "NT=Farnesyl;AC=44;", "Myristoyl": "NT=Myristoyl;AC=45;", "PyridoxalPhosphate": "NT=PyridoxalPhosphate;AC=46;", "Palmitoyl": "NT=Palmitoyl;AC=47;", "GeranylGeranyl": "NT=GeranylGeranyl;AC=48;", "Phosphopantetheine": "NT=Phosphopantetheine;AC=49;", "FAD": "NT=FAD;AC=50;", "Tripalmitate": "NT=Tripalmitate;AC=51;", "Guanidinyl": "NT=Guanidinyl;AC=52;", "HNE": "NT=HNE;AC=53;", "Glucuronyl": "NT=Glucuronyl;AC=54;", "Glutathione": "NT=Glutathione;AC=55;", "Acetyl:2H(3)": "NT=Acetyl:2H(3);AC=56;", "Propionyl": "NT=Propionyl;AC=58;", "Propionyl:13C(3)": "NT=Propionyl:13C(3);AC=59;", "GIST-Quat": "NT=GIST-Quat;AC=60;", "GIST-Quat:2H(3)": "NT=GIST-Quat:2H(3);AC=61;", "GIST-Quat:2H(6)": "NT=GIST-Quat:2H(6);AC=62;", "GIST-Quat:2H(9)": "NT=GIST-Quat:2H(9);AC=63;", "Succinyl": "NT=Succinyl;AC=64;", "Succinyl:2H(4)": "NT=Succinyl:2H(4);AC=65;", "Succinyl:13C(4)": "NT=Succinyl:13C(4);AC=66;", "Iminobiotin": "NT=Iminobiotin;AC=89;", "ESP": "NT=ESP;AC=90;", "ESP:2H(10)": "NT=ESP:2H(10);AC=91;", "NHS-LC-Biotin": "NT=NHS-LC-Biotin;AC=92;", "EDT-maleimide-PEO-biotin": "NT=EDT-maleimide-PEO-biotin;AC=93;", "IMID": "NT=IMID;AC=94;", "IMID:2H(4)": "NT=IMID:2H(4);AC=95;", "Propionamide:2H(3)": "NT=Propionamide:2H(3);AC=97;", "ICAT-C": "NT=ICAT-C;AC=105;", "ICAT-C:13C(9)": "NT=ICAT-C:13C(9);AC=106;", "FormylMet": "NT=FormylMet;AC=107;", "Nethylmaleimide": "NT=Nethylmaleimide;AC=108;", "OxLysBiotinRed": "NT=OxLysBiotinRed;AC=112;", "OxLysBiotin": "NT=OxLysBiotin;AC=113;", "OxProBiotinRed": "NT=OxProBiotinRed;AC=114;", "OxProBiotin": "NT=OxProBiotin;AC=115;", "OxArgBiotin": "NT=OxArgBiotin;AC=116;", "OxArgBiotinRed": "NT=OxArgBiotinRed;AC=117;", "EDT-iodoacetyl-PEO-biotin": "NT=EDT-iodoacetyl-PEO-biotin;AC=118;", "IBTP": "NT=IBTP;AC=119;", "GG": "NT=GG;AC=121;", "Formyl": "NT=Formyl;AC=122;", "ICAT-H": "NT=ICAT-H;AC=123;", "ICAT-H:13C(6)": "NT=ICAT-H:13C(6);AC=124;", "Xlink:DTSSP[88]": "NT=Xlink:DTSSP[88];AC=126;", "Fluoro": "NT=Fluoro;AC=127;", "Fluorescein": "NT=Fluorescein;AC=128;", "Iodo": "NT=Iodo;AC=129;", "Diiodo": "NT=Diiodo;AC=130;", "Triiodo": "NT=Triiodo;AC=131;", "Myristoleyl": "NT=Myristoleyl;AC=134;", "Myristoyl+Delta:H(-4)": "NT=Myristoyl+Delta:H(-4);AC=135;", "Benzoyl": "NT=Benzoyl;AC=136;", "Hex(5)HexNAc(2)": "NT=Hex(5)HexNAc(2);AC=137;", "Dansyl": "NT=Dansyl;AC=139;", "a-type-ion": "NT=a-type-ion;AC=140;", "Amidine": "NT=Amidine;AC=141;", "HexNAc(1)dHex(1)": "NT=HexNAc(1)dHex(1);AC=142;", "HexNAc(2)": "NT=HexNAc(2);AC=143;", "Hex(3)": "NT=Hex(3);AC=144;", "HexNAc(1)dHex(2)": "NT=HexNAc(1)dHex(2);AC=145;", "Hex(1)HexNAc(1)dHex(1)": "NT=Hex(1)HexNAc(1)dHex(1);AC=146;", "HexNAc(2)dHex(1)": "NT=HexNAc(2)dHex(1);AC=147;", "Hex(1)HexNAc(2)": "NT=Hex(1)HexNAc(2);AC=148;", "Hex(1)HexNAc(1)NeuAc(1)": "NT=Hex(1)HexNAc(1)NeuAc(1);AC=149;", "HexNAc(2)dHex(2)": "NT=HexNAc(2)dHex(2);AC=150;", "Hex(1)HexNAc(2)Pent(1)": "NT=Hex(1)HexNAc(2)Pent(1);AC=151;", "Hex(1)HexNAc(2)dHex(1)": "NT=Hex(1)HexNAc(2)dHex(1);AC=152;", "Hex(2)HexNAc(2)": "NT=Hex(2)HexNAc(2);AC=153;", "Hex(3)HexNAc(1)Pent(1)": "NT=Hex(3)HexNAc(1)Pent(1);AC=154;", "Hex(1)HexNAc(2)dHex(1)Pent(1)": "NT=Hex(1)HexNAc(2)dHex(1)Pent(1);AC=155;", "Hex(1)HexNAc(2)dHex(2)": "NT=Hex(1)HexNAc(2)dHex(2);AC=156;", "Hex(2)HexNAc(2)Pent(1)": "NT=Hex(2)HexNAc(2)Pent(1);AC=157;", "Hex(2)HexNAc(2)dHex(1)": "NT=Hex(2)HexNAc(2)dHex(1);AC=158;", "Hex(3)HexNAc(2)": "NT=Hex(3)HexNAc(2);AC=159;", "Hex(1)HexNAc(1)NeuAc(2)": "NT=Hex(1)HexNAc(1)NeuAc(2);AC=160;", "Hex(3)HexNAc(2)Phos(1)": "NT=Hex(3)HexNAc(2)Phos(1);AC=161;", "Delta:S(-1)Se(1)": "NT=Delta:S(-1)Se(1);AC=162;", "Delta:H(-1)N(-1)18O(1)": "NT=Delta:H(-1)N(-1)18O(1);AC=170;", "NBS:13C(6)": "NT=NBS:13C(6);AC=171;", "NBS": "NT=NBS;AC=172;", "BHT": "NT=BHT;AC=176;", "DAET": "NT=DAET;AC=178;", "Label:13C(9)": "NT=Label:13C(9);AC=184;", "Label:13C(9)+Phospho": "NT=Label:13C(9)+Phospho;AC=185;", "HPG": "NT=HPG;AC=186;", "2HPG": "NT=2HPG;AC=187;", "Label:13C(6)": "NT=Label:13C(6);AC=188;", "Label:18O(2)": "NT=Label:18O(2);AC=193;", "AccQTag": "NT=AccQTag;AC=194;", "QAT": "NT=QAT;AC=195;", "QAT:2H(3)": "NT=QAT:2H(3);AC=196;", "EQAT": "NT=EQAT;AC=197;", "EQAT:2H(5)": "NT=EQAT:2H(5);AC=198;", "Dimethyl:2H(4)": "NT=Dimethyl:2H(4);AC=199;", "Ethanedithiol": "NT=Ethanedithiol;AC=200;", "Delta:H(6)C(6)O(1)": "NT=Delta:H(6)C(6)O(1);AC=205;", "Delta:H(4)C(3)O(1)": "NT=Delta:H(4)C(3)O(1);AC=206;", "Delta:H(2)C(3)": "NT=Delta:H(2)C(3);AC=207;", "Delta:H(4)C(6)": "NT=Delta:H(4)C(6);AC=208;", "Delta:H(8)C(6)O(2)": "NT=Delta:H(8)C(6)O(2);AC=209;", "NEIAA": "NT=NEIAA;AC=211;", "NEIAA:2H(5)": "NT=NEIAA:2H(5);AC=212;", "ADP-Ribosyl": "NT=ADP-Ribosyl;AC=213;", "iTRAQ4plex": "NT=iTRAQ4plex;AC=214;", "IGBP": "NT=IGBP;AC=243;", "Crotonaldehyde": "NT=Crotonaldehyde;AC=253;", "Delta:H(2)C(2)": "NT=Delta:H(2)C(2);AC=254;", "Delta:H(4)C(2)": "NT=Delta:H(4)C(2);AC=255;", "Delta:H(4)C(3)": "NT=Delta:H(4)C(3);AC=256;", "Label:18O(1)": "NT=Label:18O(1);AC=258;", "Label:13C(6)15N(2)": "NT=Label:13C(6)15N(2);AC=259;", "Thiophospho": "NT=Thiophospho;AC=260;", "SPITC": "NT=SPITC;AC=261;", "Label:2H(3)": "NT=Label:2H(3);AC=262;", "PET": "NT=PET;AC=264;", "Label:13C(6)15N(4)": "NT=Label:13C(6)15N(4);AC=267;", "Label:13C(5)15N(1)": "NT=Label:13C(5)15N(1);AC=268;", "Label:13C(9)15N(1)": "NT=Label:13C(9)15N(1);AC=269;", "Cytopiloyne": "NT=Cytopiloyne;AC=270;", "Cytopiloyne+water": "NT=Cytopiloyne+water;AC=271;", "CAF": "NT=CAF;AC=272;", "Nitrosyl": "NT=Nitrosyl;AC=275;", "AEBS": "NT=AEBS;AC=276;", "Ethanolyl": "NT=Ethanolyl;AC=278;", "Ethyl": "NT=Ethyl;AC=280;", "CoenzymeA": "NT=CoenzymeA;AC=281;", "Methyl:2H(2)": "NT=Methyl:2H(2);AC=284;", "SulfanilicAcid": "NT=SulfanilicAcid;AC=285;", "SulfanilicAcid:13C(6)": "NT=SulfanilicAcid:13C(6);AC=286;", "Trp->Oxolactone": "NT=Trp->Oxolactone;AC=288;", "Biotin-PEO-Amine": "NT=Biotin-PEO-Amine;AC=289;", "Biotin-HPDP": "NT=Biotin-HPDP;AC=290;", "Delta:Hg(1)": "NT=Delta:Hg(1);AC=291;", "IodoU-AMP": "NT=IodoU-AMP;AC=292;", "CAMthiopropanoyl": "NT=CAMthiopropanoyl;AC=293;", "IED-Biotin": "NT=IED-Biotin;AC=294;", "dHex": "NT=dHex;AC=295;", "Methyl:2H(3)": "NT=Methyl:2H(3);AC=298;", "Carboxy": "NT=Carboxy;AC=299;", "Bromobimane": "NT=Bromobimane;AC=301;", "Menadione": "NT=Menadione;AC=302;", "DeStreak": "NT=DeStreak;AC=303;", "dHex(1)Hex(3)HexNAc(4)": "NT=dHex(1)Hex(3)HexNAc(4);AC=305;", "dHex(1)Hex(4)HexNAc(4)": "NT=dHex(1)Hex(4)HexNAc(4);AC=307;", "dHex(1)Hex(5)HexNAc(4)": "NT=dHex(1)Hex(5)HexNAc(4);AC=308;", "Hex(3)HexNAc(4)": "NT=Hex(3)HexNAc(4);AC=309;", "Hex(4)HexNAc(4)": "NT=Hex(4)HexNAc(4);AC=310;", "Hex(5)HexNAc(4)": "NT=Hex(5)HexNAc(4);AC=311;", "Cysteinyl": "NT=Cysteinyl;AC=312;", "Lys-loss": "NT=Lys-loss;AC=313;", "Nmethylmaleimide": "NT=Nmethylmaleimide;AC=314;", "DimethylpyrroleAdduct": "NT=DimethylpyrroleAdduct;AC=316;", "Delta:H(2)C(5)": "NT=Delta:H(2)C(5);AC=318;", "Delta:H(2)C(3)O(1)": "NT=Delta:H(2)C(3)O(1);AC=319;", "Nethylmaleimide+water": "NT=Nethylmaleimide+water;AC=320;", "Xlink:B10621": "NT=Xlink:B10621;AC=323;", "Xlink:DTBP[87]": "NT=Xlink:DTBP[87];AC=324;", "FP-Biotin": "NT=FP-Biotin;AC=325;", "Delta:H(4)C(2)O(-1)S(1)": "NT=Delta:H(4)C(2)O(-1)S(1);AC=327;", "Methyl:2H(3)13C(1)": "NT=Methyl:2H(3)13C(1);AC=329;", "Dimethyl:2H(6)13C(2)": "NT=Dimethyl:2H(6)13C(2);AC=330;", "Thiophos-S-S-biotin": "NT=Thiophos-S-S-biotin;AC=332;", "Can-FP-biotin": "NT=Can-FP-biotin;AC=333;", "HNE+Delta:H(2)": "NT=HNE+Delta:H(2);AC=335;", "Methylamine": "NT=Methylamine;AC=337;", "Bromo": "NT=Bromo;AC=340;", "Amino": "NT=Amino;AC=342;", "Argbiotinhydrazide": "NT=Argbiotinhydrazide;AC=343;", "Arg->GluSA": "NT=Arg->GluSA;AC=344;", "Trioxidation": "NT=Trioxidation;AC=345;", "His->Asn": "NT=His->Asn;AC=348;", "His->Asp": "NT=His->Asp;AC=349;", "Trp->Hydroxykynurenin": "NT=Trp->Hydroxykynurenin;AC=350;", "Trp->Kynurenin": "NT=Trp->Kynurenin;AC=351;", "Lys->Allysine": "NT=Lys->Allysine;AC=352;", "Lysbiotinhydrazide": "NT=Lysbiotinhydrazide;AC=353;", "Nitro": "NT=Nitro;AC=354;", "probiotinhydrazide": "NT=probiotinhydrazide;AC=357;", "Pro->pyro-Glu": "NT=Pro->pyro-Glu;AC=359;", "Pro->Pyrrolidinone": "NT=Pro->Pyrrolidinone;AC=360;", "Thrbiotinhydrazide": "NT=Thrbiotinhydrazide;AC=361;", "Diisopropylphosphate": "NT=Diisopropylphosphate;AC=362;", "Isopropylphospho": "NT=Isopropylphospho;AC=363;", "ICPL:13C(6)": "NT=ICPL:13C(6);AC=364;", "ICPL": "NT=ICPL;AC=365;", "Deamidated:18O(1)": "NT=Deamidated:18O(1);AC=366;", "Cys->Dha": "NT=Cys->Dha;AC=368;", "Pro->Pyrrolidone": "NT=Pro->Pyrrolidone;AC=369;", "HMVK": "NT=HMVK;AC=371;", "Arg->Orn": "NT=Arg->Orn;AC=372;", "Dehydro": "NT=Dehydro;AC=374;", "Diphthamide": "NT=Diphthamide;AC=375;", "Hydroxyfarnesyl": "NT=Hydroxyfarnesyl;AC=376;", "Diacylglycerol": "NT=Diacylglycerol;AC=377;", "Carboxyethyl": "NT=Carboxyethyl;AC=378;", "Hypusine": "NT=Hypusine;AC=379;", "Retinylidene": "NT=Retinylidene;AC=380;", "Lys->AminoadipicAcid": "NT=Lys->AminoadipicAcid;AC=381;", "Cys->PyruvicAcid": "NT=Cys->PyruvicAcid;AC=382;", "Ammonia-loss": "NT=Ammonia-loss;AC=385;", "Phycocyanobilin": "NT=Phycocyanobilin;AC=387;", "Phycoerythrobilin": "NT=Phycoerythrobilin;AC=388;", "Phytochromobilin": "NT=Phytochromobilin;AC=389;", "Heme": "NT=Heme;AC=390;", "Molybdopterin": "NT=Molybdopterin;AC=391;", "Quinone": "NT=Quinone;AC=392;", "Glucosylgalactosyl": "NT=Glucosylgalactosyl;AC=393;", "GPIanchor": "NT=GPIanchor;AC=394;", "PhosphoribosyldephosphoCoA": "NT=PhosphoribosyldephosphoCoA;AC=395;", "GlycerylPE": "NT=GlycerylPE;AC=396;", "Triiodothyronine": "NT=Triiodothyronine;AC=397;", "Thyroxine": "NT=Thyroxine;AC=398;", "Tyr->Dha": "NT=Tyr->Dha;AC=400;", "Didehydro": "NT=Didehydro;AC=401;", "Cys->Oxoalanine": "NT=Cys->Oxoalanine;AC=402;", "Ser->LacticAcid": "NT=Ser->LacticAcid;AC=403;", "Phosphoadenosine": "NT=Phosphoadenosine;AC=405;", "Hydroxycinnamyl": "NT=Hydroxycinnamyl;AC=407;", "Glycosyl": "NT=Glycosyl;AC=408;", "FMNH": "NT=FMNH;AC=409;", "Archaeol": "NT=Archaeol;AC=410;", "Phenylisocyanate": "NT=Phenylisocyanate;AC=411;", "Phenylisocyanate:2H(5)": "NT=Phenylisocyanate:2H(5);AC=412;", "Phosphoguanosine": "NT=Phosphoguanosine;AC=413;", "Hydroxymethyl": "NT=Hydroxymethyl;AC=414;", "MolybdopterinGD+Delta:S(-1)Se(1)": "NT=MolybdopterinGD+Delta:S(-1)Se(1);AC=415;", "Dipyrrolylmethanemethyl": "NT=Dipyrrolylmethanemethyl;AC=416;", "PhosphoUridine": "NT=PhosphoUridine;AC=417;", "Glycerophospho": "NT=Glycerophospho;AC=419;", "Carboxy->Thiocarboxy": "NT=Carboxy->Thiocarboxy;AC=420;", "Sulfide": "NT=Sulfide;AC=421;", "PyruvicAcidIminyl": "NT=PyruvicAcidIminyl;AC=422;", "Delta:Se(1)": "NT=Delta:Se(1);AC=423;", "MolybdopterinGD": "NT=MolybdopterinGD;AC=424;", "Dioxidation": "NT=Dioxidation;AC=425;", "Octanoyl": "NT=Octanoyl;AC=426;", "PhosphoHexNAc": "NT=PhosphoHexNAc;AC=428;", "PhosphoHex": "NT=PhosphoHex;AC=429;", "Palmitoleyl": "NT=Palmitoleyl;AC=431;", "Cholesterol": "NT=Cholesterol;AC=432;", "Didehydroretinylidene": "NT=Didehydroretinylidene;AC=433;", "CHDH": "NT=CHDH;AC=434;", "Methylpyrroline": "NT=Methylpyrroline;AC=435;", "Hydroxyheme": "NT=Hydroxyheme;AC=436;", "MicrocinC7": "NT=MicrocinC7;AC=437;", "Cyano": "NT=Cyano;AC=438;", "Diironsubcluster": "NT=Diironsubcluster;AC=439;", "Amidino": "NT=Amidino;AC=440;", "FMN": "NT=FMN;AC=442;", "FMNC": "NT=FMNC;AC=443;", "CuSMo": "NT=CuSMo;AC=444;", "Hydroxytrimethyl": "NT=Hydroxytrimethyl;AC=445;", "Deoxy": "NT=Deoxy;AC=447;", "Microcin": "NT=Microcin;AC=448;", "Decanoyl": "NT=Decanoyl;AC=449;", "Glu": "NT=Glu;AC=450;", "GluGlu": "NT=GluGlu;AC=451;", "GluGluGlu": "NT=GluGluGlu;AC=452;", "GluGluGluGlu": "NT=GluGluGluGlu;AC=453;", "HexN": "NT=HexN;AC=454;", "Xlink:DMP[154]": "NT=Xlink:DMP[154];AC=455;", "Xlink:DMP": "NT=Xlink:DMP;AC=456;", "NDA": "NT=NDA;AC=457;", "SPITC:13C(6)": "NT=SPITC:13C(6);AC=464;", "AEC-MAEC": "NT=AEC-MAEC;AC=472;", "TMAB": "NT=TMAB;AC=476;", "TMAB:2H(9)": "NT=TMAB:2H(9);AC=477;", "FTC": "NT=FTC;AC=478;", "Label:2H(4)": "NT=Label:2H(4);AC=481;", "DHP": "NT=DHP;AC=488;", "Hep": "NT=Hep;AC=490;", "BADGE": "NT=BADGE;AC=493;", "CyDye-Cy3": "NT=CyDye-Cy3;AC=494;", "CyDye-Cy5": "NT=CyDye-Cy5;AC=495;", "BHTOH": "NT=BHTOH;AC=498;", "IGBP:13C(2)": "NT=IGBP:13C(2);AC=499;", "Nmethylmaleimide+water": "NT=Nmethylmaleimide+water;AC=500;", "PyMIC": "NT=PyMIC;AC=501;", "LG-lactam-K": "NT=LG-lactam-K;AC=503;", "LG-Hlactam-K": "NT=LG-Hlactam-K;AC=504;", "LG-lactam-R": "NT=LG-lactam-R;AC=505;", "LG-Hlactam-R": "NT=LG-Hlactam-R;AC=506;", "Dimethyl:2H(4)13C(2)": "NT=Dimethyl:2H(4)13C(2);AC=510;", "Hex(2)": "NT=Hex(2);AC=512;", "C8-QAT": "NT=C8-QAT;AC=513;", "PropylNAGthiazoline": "NT=PropylNAGthiazoline;AC=514;", "FNEM": "NT=FNEM;AC=515;", "Diethyl": "NT=Diethyl;AC=518;", "BisANS": "NT=BisANS;AC=519;", "Piperidine": "NT=Piperidine;AC=520;", "Maleimide-PEO2-Biotin": "NT=Maleimide-PEO2-Biotin;AC=522;", "Sulfo-NHS-LC-LC-Biotin": "NT=Sulfo-NHS-LC-LC-Biotin;AC=523;", "CLIP_TRAQ_2": "NT=CLIP_TRAQ_2;AC=525;", "Dethiomethyl": "NT=Dethiomethyl;AC=526;", "Methyl+Deamidated": "NT=Methyl+Deamidated;AC=528;", "Delta:H(5)C(2)": "NT=Delta:H(5)C(2);AC=529;", "Cation:K": "NT=Cation:K;AC=530;", "Cation:Cu[I]": "NT=Cation:Cu[I];AC=531;", "iTRAQ4plex114": "NT=iTRAQ4plex114;AC=532;", "iTRAQ4plex115": "NT=iTRAQ4plex115;AC=533;", "Dibromo": "NT=Dibromo;AC=534;", "LRGG": "NT=LRGG;AC=535;", "CLIP_TRAQ_3": "NT=CLIP_TRAQ_3;AC=536;", "CLIP_TRAQ_4": "NT=CLIP_TRAQ_4;AC=537;", "Biotin:Cayman-10141": "NT=Biotin:Cayman-10141;AC=538;", "Biotin:Cayman-10013": "NT=Biotin:Cayman-10013;AC=539;", "Ala->Ser": "NT=Ala->Ser;AC=540;", "Ala->Thr": "NT=Ala->Thr;AC=541;", "Ala->Asp": "NT=Ala->Asp;AC=542;", "Ala->Pro": "NT=Ala->Pro;AC=543;", "Ala->Gly": "NT=Ala->Gly;AC=544;", "Ala->Glu": "NT=Ala->Glu;AC=545;", "Ala->Val": "NT=Ala->Val;AC=546;", "Cys->Phe": "NT=Cys->Phe;AC=547;", "Cys->Ser": "NT=Cys->Ser;AC=548;", "Cys->Trp": "NT=Cys->Trp;AC=549;", "Cys->Tyr": "NT=Cys->Tyr;AC=550;", "Cys->Arg": "NT=Cys->Arg;AC=551;", "Cys->Gly": "NT=Cys->Gly;AC=552;", "Asp->Ala": "NT=Asp->Ala;AC=553;", "Asp->His": "NT=Asp->His;AC=554;", "Asp->Asn": "NT=Asp->Asn;AC=555;", "Asp->Gly": "NT=Asp->Gly;AC=556;", "Asp->Tyr": "NT=Asp->Tyr;AC=557;", "Asp->Glu": "NT=Asp->Glu;AC=558;", "Asp->Val": "NT=Asp->Val;AC=559;", "Glu->Ala": "NT=Glu->Ala;AC=560;", "Glu->Gln": "NT=Glu->Gln;AC=561;", "Glu->Asp": "NT=Glu->Asp;AC=562;", "Glu->Lys": "NT=Glu->Lys;AC=563;", "Glu->Gly": "NT=Glu->Gly;AC=564;", "Glu->Val": "NT=Glu->Val;AC=565;", "Phe->Ser": "NT=Phe->Ser;AC=566;", "Phe->Cys": "NT=Phe->Cys;AC=567;", "Phe->Xle": "NT=Phe->Xle;AC=568;", "Phe->Tyr": "NT=Phe->Tyr;AC=569;", "Phe->Val": "NT=Phe->Val;AC=570;", "Gly->Ala": "NT=Gly->Ala;AC=571;", "Gly->Ser": "NT=Gly->Ser;AC=572;", "Gly->Trp": "NT=Gly->Trp;AC=573;", "Gly->Glu": "NT=Gly->Glu;AC=574;", "Gly->Val": "NT=Gly->Val;AC=575;", "Gly->Asp": "NT=Gly->Asp;AC=576;", "Gly->Cys": "NT=Gly->Cys;AC=577;", "Gly->Arg": "NT=Gly->Arg;AC=578;", "His->Pro": "NT=His->Pro;AC=580;", "His->Tyr": "NT=His->Tyr;AC=581;", "His->Gln": "NT=His->Gln;AC=582;", "His->Arg": "NT=His->Arg;AC=584;", "His->Xle": "NT=His->Xle;AC=585;", "Xle->Thr": "NT=Xle->Thr;AC=588;", "Xle->Asn": "NT=Xle->Asn;AC=589;", "Xle->Lys": "NT=Xle->Lys;AC=590;", "Lys->Thr": "NT=Lys->Thr;AC=594;", "Lys->Asn": "NT=Lys->Asn;AC=595;", "Lys->Glu": "NT=Lys->Glu;AC=596;", "Lys->Gln": "NT=Lys->Gln;AC=597;", "Lys->Met": "NT=Lys->Met;AC=598;", "Lys->Arg": "NT=Lys->Arg;AC=599;", "Lys->Xle": "NT=Lys->Xle;AC=600;", "Xle->Ser": "NT=Xle->Ser;AC=601;", "Xle->Phe": "NT=Xle->Phe;AC=602;", "Xle->Trp": "NT=Xle->Trp;AC=603;", "Xle->Pro": "NT=Xle->Pro;AC=604;", "Xle->Val": "NT=Xle->Val;AC=605;", "Xle->His": "NT=Xle->His;AC=606;", "Xle->Gln": "NT=Xle->Gln;AC=607;", "Xle->Met": "NT=Xle->Met;AC=608;", "Xle->Arg": "NT=Xle->Arg;AC=609;", "Met->Thr": "NT=Met->Thr;AC=610;", "Met->Arg": "NT=Met->Arg;AC=611;", "Met->Lys": "NT=Met->Lys;AC=613;", "Met->Xle": "NT=Met->Xle;AC=614;", "Met->Val": "NT=Met->Val;AC=615;", "Asn->Ser": "NT=Asn->Ser;AC=616;", "Asn->Thr": "NT=Asn->Thr;AC=617;", "Asn->Lys": "NT=Asn->Lys;AC=618;", "Asn->Tyr": "NT=Asn->Tyr;AC=619;", "Asn->His": "NT=Asn->His;AC=620;", "Asn->Asp": "NT=Asn->Asp;AC=621;", "Asn->Xle": "NT=Asn->Xle;AC=622;", "Pro->Ser": "NT=Pro->Ser;AC=623;", "Pro->Ala": "NT=Pro->Ala;AC=624;", "Pro->His": "NT=Pro->His;AC=625;", "Pro->Gln": "NT=Pro->Gln;AC=626;", "Pro->Thr": "NT=Pro->Thr;AC=627;", "Pro->Arg": "NT=Pro->Arg;AC=628;", "Pro->Xle": "NT=Pro->Xle;AC=629;", "Gln->Pro": "NT=Gln->Pro;AC=630;", "Gln->Lys": "NT=Gln->Lys;AC=631;", "Gln->Glu": "NT=Gln->Glu;AC=632;", "Gln->His": "NT=Gln->His;AC=633;", "Gln->Arg": "NT=Gln->Arg;AC=634;", "Gln->Xle": "NT=Gln->Xle;AC=635;", "Arg->Ser": "NT=Arg->Ser;AC=636;", "Arg->Trp": "NT=Arg->Trp;AC=637;", "Arg->Thr": "NT=Arg->Thr;AC=638;", "Arg->Pro": "NT=Arg->Pro;AC=639;", "Arg->Lys": "NT=Arg->Lys;AC=640;", "Arg->His": "NT=Arg->His;AC=641;", "Arg->Gln": "NT=Arg->Gln;AC=642;", "Arg->Met": "NT=Arg->Met;AC=643;", "Arg->Cys": "NT=Arg->Cys;AC=644;", "Arg->Xle": "NT=Arg->Xle;AC=645;", "Arg->Gly": "NT=Arg->Gly;AC=646;", "Ser->Phe": "NT=Ser->Phe;AC=647;", "Ser->Ala": "NT=Ser->Ala;AC=648;", "Ser->Trp": "NT=Ser->Trp;AC=649;", "Ser->Thr": "NT=Ser->Thr;AC=650;", "Ser->Asn": "NT=Ser->Asn;AC=651;", "Ser->Pro": "NT=Ser->Pro;AC=652;", "Ser->Tyr": "NT=Ser->Tyr;AC=653;", "Ser->Cys": "NT=Ser->Cys;AC=654;", "Ser->Arg": "NT=Ser->Arg;AC=655;", "Ser->Xle": "NT=Ser->Xle;AC=656;", "Ser->Gly": "NT=Ser->Gly;AC=657;", "Thr->Ser": "NT=Thr->Ser;AC=658;", "Thr->Ala": "NT=Thr->Ala;AC=659;", "Thr->Asn": "NT=Thr->Asn;AC=660;", "Thr->Lys": "NT=Thr->Lys;AC=661;", "Thr->Pro": "NT=Thr->Pro;AC=662;", "Thr->Met": "NT=Thr->Met;AC=663;", "Thr->Xle": "NT=Thr->Xle;AC=664;", "Thr->Arg": "NT=Thr->Arg;AC=665;", "Val->Phe": "NT=Val->Phe;AC=666;", "Val->Ala": "NT=Val->Ala;AC=667;", "Val->Glu": "NT=Val->Glu;AC=668;", "Val->Met": "NT=Val->Met;AC=669;", "Val->Asp": "NT=Val->Asp;AC=670;", "Val->Xle": "NT=Val->Xle;AC=671;", "Val->Gly": "NT=Val->Gly;AC=672;", "Trp->Ser": "NT=Trp->Ser;AC=673;", "Trp->Cys": "NT=Trp->Cys;AC=674;", "Trp->Arg": "NT=Trp->Arg;AC=675;", "Trp->Gly": "NT=Trp->Gly;AC=676;", "Trp->Xle": "NT=Trp->Xle;AC=677;", "Tyr->Phe": "NT=Tyr->Phe;AC=678;", "Tyr->Ser": "NT=Tyr->Ser;AC=679;", "Tyr->Asn": "NT=Tyr->Asn;AC=680;", "Tyr->His": "NT=Tyr->His;AC=681;", "Tyr->Asp": "NT=Tyr->Asp;AC=682;", "Tyr->Cys": "NT=Tyr->Cys;AC=683;", "BDMAPP": "NT=BDMAPP;AC=684;", "NA-LNO2": "NT=NA-LNO2;AC=685;", "NA-OA-NO2": "NT=NA-OA-NO2;AC=686;", "ICPL:2H(4)": "NT=ICPL:2H(4);AC=687;", "Label:13C(6)15N(1)": "NT=Label:13C(6)15N(1);AC=695;", "Label:2H(9)13C(6)15N(2)": "NT=Label:2H(9)13C(6)15N(2);AC=696;", "NIC": "NT=NIC;AC=697;", "dNIC": "NT=dNIC;AC=698;", "HNE-Delta:H(2)O": "NT=HNE-Delta:H(2)O;AC=720;", "4-ONE": "NT=4-ONE;AC=721;", "O-Dimethylphosphate": "NT=O-Dimethylphosphate;AC=723;", "O-Methylphosphate": "NT=O-Methylphosphate;AC=724;", "Diethylphosphate": "NT=Diethylphosphate;AC=725;", "Ethylphosphate": "NT=Ethylphosphate;AC=726;", "O-pinacolylmethylphosphonate": "NT=O-pinacolylmethylphosphonate;AC=727;", "Methylphosphonate": "NT=Methylphosphonate;AC=728;", "O-Isopropylmethylphosphonate": "NT=O-Isopropylmethylphosphonate;AC=729;", "iTRAQ8plex": "NT=iTRAQ8plex;AC=730;", "iTRAQ8plex:13C(6)15N(2)": "NT=iTRAQ8plex:13C(6)15N(2);AC=731;", "Ethanolamine": "NT=Ethanolamine;AC=734;", "BEMAD_ST": "NT=BEMAD_ST;AC=735;", "BEMAD_C": "NT=BEMAD_C;AC=736;", "TMT6plex": "NT=TMT6plex;AC=737;", "TMT2plex": "NT=TMT2plex;AC=738;", "TMT": "NT=TMT;AC=739;", "ExacTagThiol": "NT=ExacTagThiol;AC=740;", "ExacTagAmine": "NT=ExacTagAmine;AC=741;", "4-ONE+Delta:H(-2)O(-1)": "NT=4-ONE+Delta:H(-2)O(-1);AC=743;", "NO_SMX_SEMD": "NT=NO_SMX_SEMD;AC=744;", "NO_SMX_SIMD": "NT=NO_SMX_SIMD;AC=746;", "Malonyl": "NT=Malonyl;AC=747;", "3sulfo": "NT=3sulfo;AC=748;", "trifluoro": "NT=trifluoro;AC=750;", "TNBS": "NT=TNBS;AC=751;", "IDEnT": "NT=IDEnT;AC=762;", "BEMAD_ST:2H(6)": "NT=BEMAD_ST:2H(6);AC=763;", "BEMAD_C:2H(6)": "NT=BEMAD_C:2H(6);AC=764;", "Met-loss": "NT=Met-loss;AC=765;", "Met-loss+Acetyl": "NT=Met-loss+Acetyl;AC=766;", "Menadione-HQ": "NT=Menadione-HQ;AC=767;", "Methyl+Acetyl:2H(3)": "NT=Methyl+Acetyl:2H(3);AC=768;", "lapachenole": "NT=lapachenole;AC=771;", "Label:13C(5)": "NT=Label:13C(5);AC=772;", "maleimide": "NT=maleimide;AC=773;", "Biotin-phenacyl": "NT=Biotin-phenacyl;AC=774;", "Carboxymethyl:13C(2)": "NT=Carboxymethyl:13C(2);AC=775;", "NEM:2H(5)": "NT=NEM:2H(5);AC=776;", "AEC-MAEC:2H(4)": "NT=AEC-MAEC:2H(4);AC=792;", "Hex(1)HexNAc(1)": "NT=Hex(1)HexNAc(1);AC=793;", "Label:13C(6)+GG": "NT=Label:13C(6)+GG;AC=799;", "Biotin:Thermo-21345": "NT=Biotin:Thermo-21345;AC=800;", "Pentylamine": "NT=Pentylamine;AC=801;", "Biotin:Thermo-21360": "NT=Biotin:Thermo-21360;AC=811;", "Cy3b-maleimide": "NT=Cy3b-maleimide;AC=821;", "Gly-loss+Amide": "NT=Gly-loss+Amide;AC=822;", "Xlink:BMOE": "NT=Xlink:BMOE;AC=824;", "Xlink:DFDNB": "NT=Xlink:DFDNB;AC=825;", "TMPP-Ac": "NT=TMPP-Ac;AC=827;", "Dihydroxyimidazolidine": "NT=Dihydroxyimidazolidine;AC=830;", "Label:2H(4)+Acetyl": "NT=Label:2H(4)+Acetyl;AC=834;", "Label:13C(6)+Acetyl": "NT=Label:13C(6)+Acetyl;AC=835;", "Label:13C(6)15N(2)+Acetyl": "NT=Label:13C(6)15N(2)+Acetyl;AC=836;", "Arg->Npo": "NT=Arg->Npo;AC=837;", "EQIGG": "NT=EQIGG;AC=846;", "Arg2PG": "NT=Arg2PG;AC=848;", "cGMP": "NT=cGMP;AC=849;", "cGMP+RMP-loss": "NT=cGMP+RMP-loss;AC=851;", "Label:2H(4)+GG": "NT=Label:2H(4)+GG;AC=853;", "MG-H1": "NT=MG-H1;AC=859;", "G-H1": "NT=G-H1;AC=860;", "ZGB": "NT=ZGB;AC=861;", "Label:13C(1)2H(3)": "NT=Label:13C(1)2H(3);AC=862;", "Label:13C(6)15N(2)+GG": "NT=Label:13C(6)15N(2)+GG;AC=864;", "ICPL:13C(6)2H(4)": "NT=ICPL:13C(6)2H(4);AC=866;", "QEQTGG": "NT=QEQTGG;AC=876;", "QQQTGG": "NT=QQQTGG;AC=877;", "Biotin:Thermo-21325": "NT=Biotin:Thermo-21325;AC=884;", "Label:13C(1)2H(3)+Oxidation": "NT=Label:13C(1)2H(3)+Oxidation;AC=885;", "HydroxymethylOP": "NT=HydroxymethylOP;AC=886;", "MDCC": "NT=MDCC;AC=887;", "mTRAQ": "NT=mTRAQ;AC=888;", "mTRAQ:13C(3)15N(1)": "NT=mTRAQ:13C(3)15N(1);AC=889;", "DyLight-maleimide": "NT=DyLight-maleimide;AC=890;", "Methyl-PEO12-Maleimide": "NT=Methyl-PEO12-Maleimide;AC=891;", "CarbamidomethylDTT": "NT=CarbamidomethylDTT;AC=893;", "CarboxymethylDTT": "NT=CarboxymethylDTT;AC=894;", "Biotin-PEG-PRA": "NT=Biotin-PEG-PRA;AC=895;", "Met->Aha": "NT=Met->Aha;AC=896;", "Label:15N(4)": "NT=Label:15N(4);AC=897;", "pyrophospho": "NT=pyrophospho;AC=898;", "Met->Hpg": "NT=Met->Hpg;AC=899;", "4AcAllylGal": "NT=4AcAllylGal;AC=901;", "DimethylArsino": "NT=DimethylArsino;AC=902;", "Lys->CamCys": "NT=Lys->CamCys;AC=903;", "Phe->CamCys": "NT=Phe->CamCys;AC=904;", "Leu->MetOx": "NT=Leu->MetOx;AC=905;", "Lys->MetOx": "NT=Lys->MetOx;AC=906;", "Galactosyl": "NT=Galactosyl;AC=907;", "Xlink:SMCC[321]": "NT=Xlink:SMCC[321];AC=908;", "Bacillosamine": "NT=Bacillosamine;AC=910;", "MTSL": "NT=MTSL;AC=911;", "HNE-BAHAH": "NT=HNE-BAHAH;AC=912;", "Methylmalonylation": "NT=Methylmalonylation;AC=914;", "Label:13C(4)15N(2)+GG": "NT=Label:13C(4)15N(2)+GG;AC=923;", "ethylamino": "NT=ethylamino;AC=926;", "MercaptoEthanol": "NT=MercaptoEthanol;AC=928;", "Ethyl+Deamidated": "NT=Ethyl+Deamidated;AC=931;", "VFQQQTGG": "NT=VFQQQTGG;AC=932;", "VIEVYQEQTGG": "NT=VIEVYQEQTGG;AC=933;", "AMTzHexNAc2": "NT=AMTzHexNAc2;AC=934;", "Atto495Maleimide": "NT=Atto495Maleimide;AC=935;", "Chlorination": "NT=Chlorination;AC=936;", "dichlorination": "NT=dichlorination;AC=937;", "AROD": "NT=AROD;AC=938;", "Cys->methylaminoAla": "NT=Cys->methylaminoAla;AC=939;", "Cys->ethylaminoAla": "NT=Cys->ethylaminoAla;AC=940;", "DNPS": "NT=DNPS;AC=941;", "SulfoGMBS": "NT=SulfoGMBS;AC=942;", "DimethylamineGMBS": "NT=DimethylamineGMBS;AC=943;", "Label:15N(2)2H(9)": "NT=Label:15N(2)2H(9);AC=944;", "LG-anhydrolactam": "NT=LG-anhydrolactam;AC=946;", "LG-pyrrole": "NT=LG-pyrrole;AC=947;", "LG-anhyropyrrole": "NT=LG-anhyropyrrole;AC=948;", "3-deoxyglucosone": "NT=3-deoxyglucosone;AC=949;", "Cation:Li": "NT=Cation:Li;AC=950;", "Cation:Ca[II]": "NT=Cation:Ca[II];AC=951;", "Cation:Fe[II]": "NT=Cation:Fe[II];AC=952;", "Cation:Ni[II]": "NT=Cation:Ni[II];AC=953;", "Cation:Zn[II]": "NT=Cation:Zn[II];AC=954;", "Cation:Ag": "NT=Cation:Ag;AC=955;", "Cation:Mg[II]": "NT=Cation:Mg[II];AC=956;", "2-succinyl": "NT=2-succinyl;AC=957;", "Propargylamine": "NT=Propargylamine;AC=958;", "Phosphopropargyl": "NT=Phosphopropargyl;AC=959;", "SUMO2135": "NT=SUMO2135;AC=960;", "SUMO3549": "NT=SUMO3549;AC=961;", "thioacylPA": "NT=thioacylPA;AC=967;", "maleimide3": "NT=maleimide3;AC=971;", "maleimide5": "NT=maleimide5;AC=972;", "Puromycin": "NT=Puromycin;AC=973;", "Carbofuran": "NT=Carbofuran;AC=977;", "BITC": "NT=BITC;AC=978;", "PEITC": "NT=PEITC;AC=979;", "glucosone": "NT=glucosone;AC=981;", "cysTMT": "NT=cysTMT;AC=984;", "cysTMT6plex": "NT=cysTMT6plex;AC=985;", "Label:13C(6)+Dimethyl": "NT=Label:13C(6)+Dimethyl;AC=986;", "Label:13C(6)15N(2)+Dimethyl": "NT=Label:13C(6)15N(2)+Dimethyl;AC=987;", "Ammonium": "NT=Ammonium;AC=989;", "ISD_z+2_ion": "NT=ISD_z+2_ion;AC=991;", "Biotin:Sigma-B1267": "NT=Biotin:Sigma-B1267;AC=993;", "Label:15N(1)": "NT=Label:15N(1);AC=994;", "Label:15N(2)": "NT=Label:15N(2);AC=995;", "Label:15N(3)": "NT=Label:15N(3);AC=996;", "sulfo+amino": "NT=sulfo+amino;AC=997;", "AHA-Alkyne": "NT=AHA-Alkyne;AC=1000;", "AHA-Alkyne-KDDDD": "NT=AHA-Alkyne-KDDDD;AC=1001;", "EGCG1": "NT=EGCG1;AC=1002;", "EGCG2": "NT=EGCG2;AC=1003;", "Label:13C(6)15N(4)+Methyl": "NT=Label:13C(6)15N(4)+Methyl;AC=1004;", "Label:13C(6)15N(4)+Dimethyl": "NT=Label:13C(6)15N(4)+Dimethyl;AC=1005;", "Label:13C(6)15N(4)+Methyl:2H(3)13C(1)": "NT=Label:13C(6)15N(4)+Methyl:2H(3)13C(1);AC=1006;", "Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2)": "NT=Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2);AC=1007;", "Cys->CamSec": "NT=Cys->CamSec;AC=1008;", "Thiazolidine": "NT=Thiazolidine;AC=1009;", "DEDGFLYMVYASQETFG": "NT=DEDGFLYMVYASQETFG;AC=1010;", "Biotin:Invitrogen-M1602": "NT=Biotin:Invitrogen-M1602;AC=1012;", "glycidamide": "NT=glycidamide;AC=1014;", "Ahx2+Hsl": "NT=Ahx2+Hsl;AC=1015;", "DMPO": "NT=DMPO;AC=1017;", "ICDID": "NT=ICDID;AC=1018;", "ICDID:2H(6)": "NT=ICDID:2H(6);AC=1019;", "Xlink:DSS[156]": "NT=Xlink:DSS[156];AC=1020;", "Xlink:EGS[244]": "NT=Xlink:EGS[244];AC=1021;", "Xlink:DST[132]": "NT=Xlink:DST[132];AC=1022;", "Xlink:DTSSP[192]": "NT=Xlink:DTSSP[192];AC=1023;", "Xlink:SMCC[237]": "NT=Xlink:SMCC[237];AC=1024;", "Xlink:DMP[140]": "NT=Xlink:DMP[140];AC=1027;", "Xlink:EGS[115]": "NT=Xlink:EGS[115];AC=1028;", "Biotin:Thermo-88310": "NT=Biotin:Thermo-88310;AC=1031;", "2-nitrobenzyl": "NT=2-nitrobenzyl;AC=1032;", "Cys->SecNEM": "NT=Cys->SecNEM;AC=1033;", "Cys->SecNEM:2H(5)": "NT=Cys->SecNEM:2H(5);AC=1034;", "Thiadiazole": "NT=Thiadiazole;AC=1035;", "Withaferin": "NT=Withaferin;AC=1036;", "Biotin:Thermo-88317": "NT=Biotin:Thermo-88317;AC=1037;", "TAMRA-FP": "NT=TAMRA-FP;AC=1038;", "Biotin:Thermo-21901+H2O": "NT=Biotin:Thermo-21901+H2O;AC=1039;", "Deoxyhypusine": "NT=Deoxyhypusine;AC=1041;", "Acetyldeoxyhypusine": "NT=Acetyldeoxyhypusine;AC=1042;", "Acetylhypusine": "NT=Acetylhypusine;AC=1043;", "Ala->Cys": "NT=Ala->Cys;AC=1044;", "Ala->Phe": "NT=Ala->Phe;AC=1045;", "Ala->His": "NT=Ala->His;AC=1046;", "Ala->Xle": "NT=Ala->Xle;AC=1047;", "Ala->Lys": "NT=Ala->Lys;AC=1048;", "Ala->Met": "NT=Ala->Met;AC=1049;", "Ala->Asn": "NT=Ala->Asn;AC=1050;", "Ala->Gln": "NT=Ala->Gln;AC=1051;", "Ala->Arg": "NT=Ala->Arg;AC=1052;", "Ala->Trp": "NT=Ala->Trp;AC=1053;", "Ala->Tyr": "NT=Ala->Tyr;AC=1054;", "Cys->Ala": "NT=Cys->Ala;AC=1055;", "Cys->Asp": "NT=Cys->Asp;AC=1056;", "Cys->Glu": "NT=Cys->Glu;AC=1057;", "Cys->His": "NT=Cys->His;AC=1058;", "Cys->Xle": "NT=Cys->Xle;AC=1059;", "Cys->Lys": "NT=Cys->Lys;AC=1060;", "Cys->Met": "NT=Cys->Met;AC=1061;", "Cys->Asn": "NT=Cys->Asn;AC=1062;", "Cys->Pro": "NT=Cys->Pro;AC=1063;", "Cys->Gln": "NT=Cys->Gln;AC=1064;", "Cys->Thr": "NT=Cys->Thr;AC=1065;", "Cys->Val": "NT=Cys->Val;AC=1066;", "Asp->Cys": "NT=Asp->Cys;AC=1067;", "Asp->Phe": "NT=Asp->Phe;AC=1068;", "Asp->Xle": "NT=Asp->Xle;AC=1069;", "Asp->Lys": "NT=Asp->Lys;AC=1070;", "Asp->Met": "NT=Asp->Met;AC=1071;", "Asp->Pro": "NT=Asp->Pro;AC=1072;", "Asp->Gln": "NT=Asp->Gln;AC=1073;", "Asp->Arg": "NT=Asp->Arg;AC=1074;", "Asp->Ser": "NT=Asp->Ser;AC=1075;", "Asp->Thr": "NT=Asp->Thr;AC=1076;", "Asp->Trp": "NT=Asp->Trp;AC=1077;", "Glu->Cys": "NT=Glu->Cys;AC=1078;", "Glu->Phe": "NT=Glu->Phe;AC=1079;", "Glu->His": "NT=Glu->His;AC=1080;", "Glu->Xle": "NT=Glu->Xle;AC=1081;", "Glu->Met": "NT=Glu->Met;AC=1082;", "Glu->Asn": "NT=Glu->Asn;AC=1083;", "Glu->Pro": "NT=Glu->Pro;AC=1084;", "Glu->Arg": "NT=Glu->Arg;AC=1085;", "Glu->Ser": "NT=Glu->Ser;AC=1086;", "Glu->Thr": "NT=Glu->Thr;AC=1087;", "Glu->Trp": "NT=Glu->Trp;AC=1088;", "Glu->Tyr": "NT=Glu->Tyr;AC=1089;", "Phe->Ala": "NT=Phe->Ala;AC=1090;", "Phe->Asp": "NT=Phe->Asp;AC=1091;", "Phe->Glu": "NT=Phe->Glu;AC=1092;", "Phe->Gly": "NT=Phe->Gly;AC=1093;", "Phe->His": "NT=Phe->His;AC=1094;", "Phe->Lys": "NT=Phe->Lys;AC=1095;", "Phe->Met": "NT=Phe->Met;AC=1096;", "Phe->Asn": "NT=Phe->Asn;AC=1097;", "Phe->Pro": "NT=Phe->Pro;AC=1098;", "Phe->Gln": "NT=Phe->Gln;AC=1099;", "Phe->Arg": "NT=Phe->Arg;AC=1100;", "Phe->Thr": "NT=Phe->Thr;AC=1101;", "Phe->Trp": "NT=Phe->Trp;AC=1102;", "Gly->Phe": "NT=Gly->Phe;AC=1103;", "Gly->His": "NT=Gly->His;AC=1104;", "Gly->Xle": "NT=Gly->Xle;AC=1105;", "Gly->Lys": "NT=Gly->Lys;AC=1106;", "Gly->Met": "NT=Gly->Met;AC=1107;", "Gly->Asn": "NT=Gly->Asn;AC=1108;", "Gly->Pro": "NT=Gly->Pro;AC=1109;", "Gly->Gln": "NT=Gly->Gln;AC=1110;", "Gly->Thr": "NT=Gly->Thr;AC=1111;", "Gly->Tyr": "NT=Gly->Tyr;AC=1112;", "His->Ala": "NT=His->Ala;AC=1113;", "His->Cys": "NT=His->Cys;AC=1114;", "His->Glu": "NT=His->Glu;AC=1115;", "His->Phe": "NT=His->Phe;AC=1116;", "His->Gly": "NT=His->Gly;AC=1117;", "His->Lys": "NT=His->Lys;AC=1119;", "His->Met": "NT=His->Met;AC=1120;", "His->Ser": "NT=His->Ser;AC=1121;", "His->Thr": "NT=His->Thr;AC=1122;", "His->Val": "NT=His->Val;AC=1123;", "His->Trp": "NT=His->Trp;AC=1124;", "Xle->Ala": "NT=Xle->Ala;AC=1125;", "Xle->Cys": "NT=Xle->Cys;AC=1126;", "Xle->Asp": "NT=Xle->Asp;AC=1127;", "Xle->Glu": "NT=Xle->Glu;AC=1128;", "Xle->Gly": "NT=Xle->Gly;AC=1129;", "Xle->Tyr": "NT=Xle->Tyr;AC=1130;", "Lys->Ala": "NT=Lys->Ala;AC=1131;", "Lys->Cys": "NT=Lys->Cys;AC=1132;", "Lys->Asp": "NT=Lys->Asp;AC=1133;", "Lys->Phe": "NT=Lys->Phe;AC=1134;", "Lys->Gly": "NT=Lys->Gly;AC=1135;", "Lys->His": "NT=Lys->His;AC=1136;", "Lys->Pro": "NT=Lys->Pro;AC=1137;", "Lys->Ser": "NT=Lys->Ser;AC=1138;", "Lys->Val": "NT=Lys->Val;AC=1139;", "Lys->Trp": "NT=Lys->Trp;AC=1140;", "Lys->Tyr": "NT=Lys->Tyr;AC=1141;", "Met->Ala": "NT=Met->Ala;AC=1142;", "Met->Cys": "NT=Met->Cys;AC=1143;", "Met->Asp": "NT=Met->Asp;AC=1144;", "Met->Glu": "NT=Met->Glu;AC=1145;", "Met->Phe": "NT=Met->Phe;AC=1146;", "Met->Gly": "NT=Met->Gly;AC=1147;", "Met->His": "NT=Met->His;AC=1148;", "Met->Asn": "NT=Met->Asn;AC=1149;", "Met->Pro": "NT=Met->Pro;AC=1150;", "Met->Gln": "NT=Met->Gln;AC=1151;", "Met->Ser": "NT=Met->Ser;AC=1152;", "Met->Trp": "NT=Met->Trp;AC=1153;", "Met->Tyr": "NT=Met->Tyr;AC=1154;", "Asn->Ala": "NT=Asn->Ala;AC=1155;", "Asn->Cys": "NT=Asn->Cys;AC=1156;", "Asn->Glu": "NT=Asn->Glu;AC=1157;", "Asn->Phe": "NT=Asn->Phe;AC=1158;", "Asn->Gly": "NT=Asn->Gly;AC=1159;", "Asn->Met": "NT=Asn->Met;AC=1160;", "Asn->Pro": "NT=Asn->Pro;AC=1161;", "Asn->Gln": "NT=Asn->Gln;AC=1162;", "Asn->Arg": "NT=Asn->Arg;AC=1163;", "Asn->Val": "NT=Asn->Val;AC=1164;", "Asn->Trp": "NT=Asn->Trp;AC=1165;", "Pro->Cys": "NT=Pro->Cys;AC=1166;", "Pro->Asp": "NT=Pro->Asp;AC=1167;", "Pro->Glu": "NT=Pro->Glu;AC=1168;", "Pro->Phe": "NT=Pro->Phe;AC=1169;", "Pro->Gly": "NT=Pro->Gly;AC=1170;", "Pro->Lys": "NT=Pro->Lys;AC=1171;", "Pro->Met": "NT=Pro->Met;AC=1172;", "Pro->Asn": "NT=Pro->Asn;AC=1173;", "Pro->Val": "NT=Pro->Val;AC=1174;", "Pro->Trp": "NT=Pro->Trp;AC=1175;", "Pro->Tyr": "NT=Pro->Tyr;AC=1176;", "Gln->Ala": "NT=Gln->Ala;AC=1177;", "Gln->Cys": "NT=Gln->Cys;AC=1178;", "Gln->Asp": "NT=Gln->Asp;AC=1179;", "Gln->Phe": "NT=Gln->Phe;AC=1180;", "Gln->Gly": "NT=Gln->Gly;AC=1181;", "Gln->Met": "NT=Gln->Met;AC=1182;", "Gln->Asn": "NT=Gln->Asn;AC=1183;", "Gln->Ser": "NT=Gln->Ser;AC=1184;", "Gln->Thr": "NT=Gln->Thr;AC=1185;", "Gln->Val": "NT=Gln->Val;AC=1186;", "Gln->Trp": "NT=Gln->Trp;AC=1187;", "Gln->Tyr": "NT=Gln->Tyr;AC=1188;", "Arg->Ala": "NT=Arg->Ala;AC=1189;", "Arg->Asp": "NT=Arg->Asp;AC=1190;", "Arg->Glu": "NT=Arg->Glu;AC=1191;", "Arg->Asn": "NT=Arg->Asn;AC=1192;", "Arg->Val": "NT=Arg->Val;AC=1193;", "Arg->Tyr": "NT=Arg->Tyr;AC=1194;", "Arg->Phe": "NT=Arg->Phe;AC=1195;", "Ser->Asp": "NT=Ser->Asp;AC=1196;", "Ser->Glu": "NT=Ser->Glu;AC=1197;", "Ser->His": "NT=Ser->His;AC=1198;", "Ser->Lys": "NT=Ser->Lys;AC=1199;", "Ser->Met": "NT=Ser->Met;AC=1200;", "Ser->Gln": "NT=Ser->Gln;AC=1201;", "Ser->Val": "NT=Ser->Val;AC=1202;", "Thr->Cys": "NT=Thr->Cys;AC=1203;", "Thr->Asp": "NT=Thr->Asp;AC=1204;", "Thr->Glu": "NT=Thr->Glu;AC=1205;", "Thr->Phe": "NT=Thr->Phe;AC=1206;", "Thr->Gly": "NT=Thr->Gly;AC=1207;", "Thr->His": "NT=Thr->His;AC=1208;", "Thr->Gln": "NT=Thr->Gln;AC=1209;", "Thr->Val": "NT=Thr->Val;AC=1210;", "Thr->Trp": "NT=Thr->Trp;AC=1211;", "Thr->Tyr": "NT=Thr->Tyr;AC=1212;", "Val->Cys": "NT=Val->Cys;AC=1213;", "Val->His": "NT=Val->His;AC=1214;", "Val->Lys": "NT=Val->Lys;AC=1215;", "Val->Asn": "NT=Val->Asn;AC=1216;", "Val->Pro": "NT=Val->Pro;AC=1217;", "Val->Gln": "NT=Val->Gln;AC=1218;", "Val->Arg": "NT=Val->Arg;AC=1219;", "Val->Ser": "NT=Val->Ser;AC=1220;", "Val->Thr": "NT=Val->Thr;AC=1221;", "Val->Trp": "NT=Val->Trp;AC=1222;", "Val->Tyr": "NT=Val->Tyr;AC=1223;", "Trp->Ala": "NT=Trp->Ala;AC=1224;", "Trp->Asp": "NT=Trp->Asp;AC=1225;", "Trp->Glu": "NT=Trp->Glu;AC=1226;", "Trp->Phe": "NT=Trp->Phe;AC=1227;", "Trp->His": "NT=Trp->His;AC=1228;", "Trp->Lys": "NT=Trp->Lys;AC=1229;", "Trp->Met": "NT=Trp->Met;AC=1230;", "Trp->Asn": "NT=Trp->Asn;AC=1231;", "Trp->Pro": "NT=Trp->Pro;AC=1232;", "Trp->Gln": "NT=Trp->Gln;AC=1233;", "Trp->Thr": "NT=Trp->Thr;AC=1234;", "Trp->Val": "NT=Trp->Val;AC=1235;", "Trp->Tyr": "NT=Trp->Tyr;AC=1236;", "Tyr->Ala": "NT=Tyr->Ala;AC=1237;", "Tyr->Glu": "NT=Tyr->Glu;AC=1238;", "Tyr->Gly": "NT=Tyr->Gly;AC=1239;", "Tyr->Lys": "NT=Tyr->Lys;AC=1240;", "Tyr->Met": "NT=Tyr->Met;AC=1241;", "Tyr->Pro": "NT=Tyr->Pro;AC=1242;", "Tyr->Gln": "NT=Tyr->Gln;AC=1243;", "Tyr->Arg": "NT=Tyr->Arg;AC=1244;", "Tyr->Thr": "NT=Tyr->Thr;AC=1245;", "Tyr->Val": "NT=Tyr->Val;AC=1246;", "Tyr->Trp": "NT=Tyr->Trp;AC=1247;", "Tyr->Xle": "NT=Tyr->Xle;AC=1248;", "AHA-SS": "NT=AHA-SS;AC=1249;", "AHA-SS_CAM": "NT=AHA-SS_CAM;AC=1250;", "Biotin:Thermo-33033": "NT=Biotin:Thermo-33033;AC=1251;", "Biotin:Thermo-33033-H": "NT=Biotin:Thermo-33033-H;AC=1252;", "2-monomethylsuccinyl": "NT=2-monomethylsuccinyl;AC=1253;", "Saligenin": "NT=Saligenin;AC=1254;", "Cresylphosphate": "NT=Cresylphosphate;AC=1255;", "CresylSaligeninPhosphate": "NT=CresylSaligeninPhosphate;AC=1256;", "Ub-Br2": "NT=Ub-Br2;AC=1257;", "Ub-VME": "NT=Ub-VME;AC=1258;", "Ub-fluorescein": "NT=Ub-fluorescein;AC=1261;", "2-dimethylsuccinyl": "NT=2-dimethylsuccinyl;AC=1262;", "Gly": "NT=Gly;AC=1263;", "pupylation": "NT=pupylation;AC=1264;", "Label:13C(4)": "NT=Label:13C(4);AC=1266;", "Label:13C(4)+Oxidation": "NT=Label:13C(4)+Oxidation;AC=1267;", "HCysThiolactone": "NT=HCysThiolactone;AC=1270;", "HCysteinyl": "NT=HCysteinyl;AC=1271;", "UgiJoullie": "NT=UgiJoullie;AC=1276;", "Dipyridyl": "NT=Dipyridyl;AC=1277;", "Furan": "NT=Furan;AC=1278;", "Difuran": "NT=Difuran;AC=1279;", "BMP-piperidinol": "NT=BMP-piperidinol;AC=1281;", "UgiJoullieProGly": "NT=UgiJoullieProGly;AC=1282;", "UgiJoullieProGlyProGly": "NT=UgiJoullieProGlyProGly;AC=1283;", "IMEHex(2)NeuAc(1)": "NT=IMEHex(2)NeuAc(1);AC=1286;", "Arg-loss": "NT=Arg-loss;AC=1287;", "Arg": "NT=Arg;AC=1288;", "Butyryl": "NT=Butyryl;AC=1289;", "Dicarbamidomethyl": "NT=Dicarbamidomethyl;AC=1290;", "Dimethyl:2H(6)": "NT=Dimethyl:2H(6);AC=1291;", "GGQ": "NT=GGQ;AC=1292;", "QTGG": "NT=QTGG;AC=1293;", "Label:13C(3)": "NT=Label:13C(3);AC=1296;", "Label:13C(3)15N(1)": "NT=Label:13C(3)15N(1);AC=1297;", "Label:13C(4)15N(1)": "NT=Label:13C(4)15N(1);AC=1298;", "Label:2H(10)": "NT=Label:2H(10);AC=1299;", "Label:2H(4)13C(1)": "NT=Label:2H(4)13C(1);AC=1300;", "Lys": "NT=Lys;AC=1301;", "mTRAQ:13C(6)15N(2)": "NT=mTRAQ:13C(6)15N(2);AC=1302;", "NeuAc": "NT=NeuAc;AC=1303;", "NeuGc": "NT=NeuGc;AC=1304;", "Propyl": "NT=Propyl;AC=1305;", "Propyl:2H(6)": "NT=Propyl:2H(6);AC=1306;", "Propiophenone": "NT=Propiophenone;AC=1310;", "Delta:H(6)C(3)O(1)": "NT=Delta:H(6)C(3)O(1);AC=1312;", "Delta:H(8)C(6)O(1)": "NT=Delta:H(8)C(6)O(1);AC=1313;", "biotinAcrolein298": "NT=biotinAcrolein298;AC=1314;", "MM-diphenylpentanone": "NT=MM-diphenylpentanone;AC=1315;", "EHD-diphenylpentanone": "NT=EHD-diphenylpentanone;AC=1317;", "Biotin:Thermo-21901+2H2O": "NT=Biotin:Thermo-21901+2H2O;AC=1320;", "DiLeu4plex115": "NT=DiLeu4plex115;AC=1321;", "DiLeu4plex": "NT=DiLeu4plex;AC=1322;", "DiLeu4plex117": "NT=DiLeu4plex117;AC=1323;", "DiLeu4plex118": "NT=DiLeu4plex118;AC=1324;", "NEMsulfur": "NT=NEMsulfur;AC=1326;", "SulfurDioxide": "NT=SulfurDioxide;AC=1327;", "NEMsulfurWater": "NT=NEMsulfurWater;AC=1328;", "bisANS-sulfonates": "NT=bisANS-sulfonates;AC=1330;", "DNCB_hapten": "NT=DNCB_hapten;AC=1331;", "Biotin:Thermo-21911": "NT=Biotin:Thermo-21911;AC=1340;", "iodoTMT": "NT=iodoTMT;AC=1341;", "iodoTMT6plex": "NT=iodoTMT6plex;AC=1342;", "Phosphogluconoylation": "NT=Phosphogluconoylation;AC=1344;", "PS_Hapten": "NT=PS_Hapten;AC=1345;", "Cy3-maleimide": "NT=Cy3-maleimide;AC=1348;", "benzylguanidine": "NT=benzylguanidine;AC=1349;", "CarboxymethylDMAP": "NT=CarboxymethylDMAP;AC=1350;", "azole": "NT=azole;AC=1355;", "phosphoRibosyl": "NT=phosphoRibosyl;AC=1356;", "NEM:2H(5)+H2O": "NT=NEM:2H(5)+H2O;AC=1358;", "Crotonyl": "NT=Crotonyl;AC=1363;", "O-Et-N-diMePhospho": "NT=O-Et-N-diMePhospho;AC=1364;", "N-dimethylphosphate": "NT=N-dimethylphosphate;AC=1365;", "dHex(1)Hex(1)": "NT=dHex(1)Hex(1);AC=1367;", "Methyl:2H(3)+Acetyl:2H(3)": "NT=Methyl:2H(3)+Acetyl:2H(3);AC=1368;", "Label:2H(3)+Oxidation": "NT=Label:2H(3)+Oxidation;AC=1370;", "Trimethyl:2H(9)": "NT=Trimethyl:2H(9);AC=1371;", "Acetyl:13C(2)": "NT=Acetyl:13C(2);AC=1372;", "dHex(1)Hex(2)": "NT=dHex(1)Hex(2);AC=1375;", "dHex(1)Hex(3)": "NT=dHex(1)Hex(3);AC=1376;", "dHex(1)Hex(4)": "NT=dHex(1)Hex(4);AC=1377;", "dHex(1)Hex(5)": "NT=dHex(1)Hex(5);AC=1378;", "dHex(1)Hex(6)": "NT=dHex(1)Hex(6);AC=1379;", "methylsulfonylethyl": "NT=methylsulfonylethyl;AC=1380;", "ethylsulfonylethyl": "NT=ethylsulfonylethyl;AC=1381;", "phenylsulfonylethyl": "NT=phenylsulfonylethyl;AC=1382;", "PyridoxalPhosphateH2": "NT=PyridoxalPhosphateH2;AC=1383;", "Homocysteic_acid": "NT=Homocysteic_acid;AC=1384;", "Hydroxamic_acid": "NT=Hydroxamic_acid;AC=1385;", "3-phosphoglyceryl": "NT=3-phosphoglyceryl;AC=1387;", "HN2_mustard": "NT=HN2_mustard;AC=1388;", "HN3_mustard": "NT=HN3_mustard;AC=1389;", "Oxidation+NEM": "NT=Oxidation+NEM;AC=1390;", "NHS-fluorescein": "NT=NHS-fluorescein;AC=1391;", "DiART6plex": "NT=DiART6plex;AC=1392;", "DiART6plex115": "NT=DiART6plex115;AC=1393;", "DiART6plex116/119": "NT=DiART6plex116/119;AC=1394;", "DiART6plex117": "NT=DiART6plex117;AC=1395;", "DiART6plex118": "NT=DiART6plex118;AC=1396;", "Iodoacetanilide": "NT=Iodoacetanilide;AC=1397;", "Iodoacetanilide:13C(6)": "NT=Iodoacetanilide:13C(6);AC=1398;", "Dap-DSP": "NT=Dap-DSP;AC=1399;", "MurNAc": "NT=MurNAc;AC=1400;", "Label:2H(7)15N(4)": "NT=Label:2H(7)15N(4);AC=1402;", "Label:2H(6)15N(1)": "NT=Label:2H(6)15N(1);AC=1403;", "EEEDVIEVYQEQTGG": "NT=EEEDVIEVYQEQTGG;AC=1405;", "EDEDTIDVFQQQTGG": "NT=EDEDTIDVFQQQTGG;AC=1406;", "Hex(5)HexNAc(4)NeuAc(2)": "NT=Hex(5)HexNAc(4)NeuAc(2);AC=1408;", "Hex(5)HexNAc(4)NeuAc(1)": "NT=Hex(5)HexNAc(4)NeuAc(1);AC=1409;", "dHex(1)Hex(5)HexNAc(4)NeuAc(1)": "NT=dHex(1)Hex(5)HexNAc(4)NeuAc(1);AC=1410;", "dHex(1)Hex(5)HexNAc(4)NeuAc(2)": "NT=dHex(1)Hex(5)HexNAc(4)NeuAc(2);AC=1411;", "s-GlcNAc": "NT=s-GlcNAc;AC=1412;", "PhosphoHex(2)": "NT=PhosphoHex(2);AC=1413;", "Trimethyl:13C(3)2H(9)": "NT=Trimethyl:13C(3)2H(9);AC=1414;", "15N-oxobutanoic": "NT=15N-oxobutanoic;AC=1419;", "spermine": "NT=spermine;AC=1420;", "spermidine": "NT=spermidine;AC=1421;", "Biotin:Thermo-21330": "NT=Biotin:Thermo-21330;AC=1423;", "Pentose": "NT=Pentose;AC=1425;", "Hex(1)Pent(1)": "NT=Hex(1)Pent(1);AC=1426;", "Hex(1)HexA(1)": "NT=Hex(1)HexA(1);AC=1427;", "Hex(1)Pent(2)": "NT=Hex(1)Pent(2);AC=1428;", "Hex(1)HexNAc(1)Phos(1)": "NT=Hex(1)HexNAc(1)Phos(1);AC=1429;", "Hex(1)HexNAc(1)Sulf(1)": "NT=Hex(1)HexNAc(1)Sulf(1);AC=1430;", "Hex(1)NeuAc(1)": "NT=Hex(1)NeuAc(1);AC=1431;", "Hex(1)NeuGc(1)": "NT=Hex(1)NeuGc(1);AC=1432;", "HexNAc(3)": "NT=HexNAc(3);AC=1433;", "HexNAc(1)NeuAc(1)": "NT=HexNAc(1)NeuAc(1);AC=1434;", "HexNAc(1)NeuGc(1)": "NT=HexNAc(1)NeuGc(1);AC=1435;", "Hex(1)HexNAc(1)dHex(1)Me(1)": "NT=Hex(1)HexNAc(1)dHex(1)Me(1);AC=1436;", "Hex(1)HexNAc(1)dHex(1)Me(2)": "NT=Hex(1)HexNAc(1)dHex(1)Me(2);AC=1437;", "Hex(2)HexNAc(1)": "NT=Hex(2)HexNAc(1);AC=1438;", "Hex(1)HexA(1)HexNAc(1)": "NT=Hex(1)HexA(1)HexNAc(1);AC=1439;", "Hex(2)HexNAc(1)Me(1)": "NT=Hex(2)HexNAc(1)Me(1);AC=1440;", "Hex(1)Pent(3)": "NT=Hex(1)Pent(3);AC=1441;", "Hex(1)NeuAc(1)Pent(1)": "NT=Hex(1)NeuAc(1)Pent(1);AC=1442;", "Hex(2)HexNAc(1)Sulf(1)": "NT=Hex(2)HexNAc(1)Sulf(1);AC=1443;", "Hex(2)NeuAc(1)": "NT=Hex(2)NeuAc(1);AC=1444;", "dHex(2)Hex(2)": "NT=dHex(2)Hex(2);AC=1445;", "dHex(1)Hex(2)HexA(1)": "NT=dHex(1)Hex(2)HexA(1);AC=1446;", "Hex(1)HexNAc(2)Sulf(1)": "NT=Hex(1)HexNAc(2)Sulf(1);AC=1447;", "Hex(4)": "NT=Hex(4);AC=1448;", "dHex(1)Hex(2)HexNAc(2)Pent(1)": "NT=dHex(1)Hex(2)HexNAc(2)Pent(1);AC=1449;", "Hex(2)HexNAc(2)NeuAc(1)": "NT=Hex(2)HexNAc(2)NeuAc(1);AC=1450;", "Hex(3)HexNAc(2)Pent(1)": "NT=Hex(3)HexNAc(2)Pent(1);AC=1451;", "Hex(4)HexNAc(2)": "NT=Hex(4)HexNAc(2);AC=1452;", "dHex(1)Hex(4)HexNAc(1)Pent(1)": "NT=dHex(1)Hex(4)HexNAc(1)Pent(1);AC=1453;", "dHex(1)Hex(3)HexNAc(2)Pent(1)": "NT=dHex(1)Hex(3)HexNAc(2)Pent(1);AC=1454;", "Hex(3)HexNAc(2)NeuAc(1)": "NT=Hex(3)HexNAc(2)NeuAc(1);AC=1455;", "Hex(4)HexNAc(2)Pent(1)": "NT=Hex(4)HexNAc(2)Pent(1);AC=1456;", "Hex(3)HexNAc(3)Pent(1)": "NT=Hex(3)HexNAc(3)Pent(1);AC=1457;", "Hex(5)HexNAc(2)Phos(1)": "NT=Hex(5)HexNAc(2)Phos(1);AC=1458;", "dHex(1)Hex(4)HexNAc(2)Pent(1)": "NT=dHex(1)Hex(4)HexNAc(2)Pent(1);AC=1459;", "Hex(7)HexNAc(1)": "NT=Hex(7)HexNAc(1);AC=1460;", "Hex(4)HexNAc(2)NeuAc(1)": "NT=Hex(4)HexNAc(2)NeuAc(1);AC=1461;", "dHex(1)Hex(5)HexNAc(2)": "NT=dHex(1)Hex(5)HexNAc(2);AC=1462;", "dHex(1)Hex(3)HexNAc(3)Pent(1)": "NT=dHex(1)Hex(3)HexNAc(3)Pent(1);AC=1463;", "Hex(3)HexNAc(4)Sulf(1)": "NT=Hex(3)HexNAc(4)Sulf(1);AC=1464;", "Hex(6)HexNAc(2)": "NT=Hex(6)HexNAc(2);AC=1465;", "Hex(4)HexNAc(3)Pent(1)": "NT=Hex(4)HexNAc(3)Pent(1);AC=1466;", "dHex(1)Hex(4)HexNAc(3)": "NT=dHex(1)Hex(4)HexNAc(3);AC=1467;", "Hex(5)HexNAc(3)": "NT=Hex(5)HexNAc(3);AC=1468;", "Hex(3)HexNAc(4)Pent(1)": "NT=Hex(3)HexNAc(4)Pent(1);AC=1469;", "Hex(6)HexNAc(2)Phos(1)": "NT=Hex(6)HexNAc(2)Phos(1);AC=1470;", "dHex(1)Hex(4)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(3)Sulf(1);AC=1471;", "dHex(1)Hex(5)HexNAc(2)Pent(1)": "NT=dHex(1)Hex(5)HexNAc(2)Pent(1);AC=1472;", "Hex(8)HexNAc(1)": "NT=Hex(8)HexNAc(1);AC=1473;", "dHex(1)Hex(3)HexNAc(3)Pent(2)": "NT=dHex(1)Hex(3)HexNAc(3)Pent(2);AC=1474;", "dHex(2)Hex(3)HexNAc(3)Pent(1)": "NT=dHex(2)Hex(3)HexNAc(3)Pent(1);AC=1475;", "dHex(1)Hex(3)HexNAc(4)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(4)Sulf(1);AC=1476;", "dHex(1)Hex(6)HexNAc(2)": "NT=dHex(1)Hex(6)HexNAc(2);AC=1477;", "dHex(1)Hex(4)HexNAc(3)Pent(1)": "NT=dHex(1)Hex(4)HexNAc(3)Pent(1);AC=1478;", "Hex(4)HexNAc(4)Sulf(1)": "NT=Hex(4)HexNAc(4)Sulf(1);AC=1479;", "Hex(7)HexNAc(2)": "NT=Hex(7)HexNAc(2);AC=1480;", "dHex(2)Hex(4)HexNAc(3)": "NT=dHex(2)Hex(4)HexNAc(3);AC=1481;", "Hex(5)HexNAc(3)Pent(1)": "NT=Hex(5)HexNAc(3)Pent(1);AC=1482;", "Hex(4)HexNAc(3)NeuGc(1)": "NT=Hex(4)HexNAc(3)NeuGc(1);AC=1483;", "dHex(1)Hex(5)HexNAc(3)": "NT=dHex(1)Hex(5)HexNAc(3);AC=1484;", "dHex(1)Hex(3)HexNAc(4)Pent(1)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(1);AC=1485;", "Hex(3)HexNAc(5)Sulf(1)": "NT=Hex(3)HexNAc(5)Sulf(1);AC=1486;", "Hex(6)HexNAc(3)": "NT=Hex(6)HexNAc(3);AC=1487;", "Hex(3)HexNAc(4)NeuAc(1)": "NT=Hex(3)HexNAc(4)NeuAc(1);AC=1488;", "Hex(4)HexNAc(4)Pent(1)": "NT=Hex(4)HexNAc(4)Pent(1);AC=1489;", "Hex(7)HexNAc(2)Phos(1)": "NT=Hex(7)HexNAc(2)Phos(1);AC=1490;", "Hex(4)HexNAc(4)Me(2)Pent(1)": "NT=Hex(4)HexNAc(4)Me(2)Pent(1);AC=1491;", "dHex(1)Hex(3)HexNAc(3)Pent(3)": "NT=dHex(1)Hex(3)HexNAc(3)Pent(3);AC=1492;", "dHex(1)Hex(5)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(5)HexNAc(3)Sulf(1);AC=1493;", "dHex(2)Hex(3)HexNAc(3)Pent(2)": "NT=dHex(2)Hex(3)HexNAc(3)Pent(2);AC=1494;", "Hex(6)HexNAc(3)Phos(1)": "NT=Hex(6)HexNAc(3)Phos(1);AC=1495;", "Hex(4)HexNAc(5)": "NT=Hex(4)HexNAc(5);AC=1496;", "dHex(3)Hex(3)HexNAc(3)Pent(1)": "NT=dHex(3)Hex(3)HexNAc(3)Pent(1);AC=1497;", "dHex(2)Hex(4)HexNAc(3)Pent(1)": "NT=dHex(2)Hex(4)HexNAc(3)Pent(1);AC=1498;", "dHex(1)Hex(4)HexNAc(4)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(4)Sulf(1);AC=1499;", "dHex(1)Hex(7)HexNAc(2)": "NT=dHex(1)Hex(7)HexNAc(2);AC=1500;", "dHex(1)Hex(4)HexNAc(3)NeuAc(1)": "NT=dHex(1)Hex(4)HexNAc(3)NeuAc(1);AC=1501;", "Hex(7)HexNAc(2)Phos(2)": "NT=Hex(7)HexNAc(2)Phos(2);AC=1502;", "Hex(5)HexNAc(4)Sulf(1)": "NT=Hex(5)HexNAc(4)Sulf(1);AC=1503;", "Hex(8)HexNAc(2)": "NT=Hex(8)HexNAc(2);AC=1504;", "dHex(1)Hex(3)HexNAc(4)Pent(2)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(2);AC=1505;", "dHex(1)Hex(4)HexNAc(3)NeuGc(1)": "NT=dHex(1)Hex(4)HexNAc(3)NeuGc(1);AC=1506;", "dHex(2)Hex(3)HexNAc(4)Pent(1)": "NT=dHex(2)Hex(3)HexNAc(4)Pent(1);AC=1507;", "dHex(1)Hex(3)HexNAc(5)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(5)Sulf(1);AC=1508;", "dHex(1)Hex(6)HexNAc(3)": "NT=dHex(1)Hex(6)HexNAc(3);AC=1509;", "dHex(1)Hex(3)HexNAc(4)NeuAc(1)": "NT=dHex(1)Hex(3)HexNAc(4)NeuAc(1);AC=1510;", "dHex(3)Hex(3)HexNAc(4)": "NT=dHex(3)Hex(3)HexNAc(4);AC=1511;", "dHex(1)Hex(4)HexNAc(4)Pent(1)": "NT=dHex(1)Hex(4)HexNAc(4)Pent(1);AC=1512;", "Hex(4)HexNAc(5)Sulf(1)": "NT=Hex(4)HexNAc(5)Sulf(1);AC=1513;", "Hex(7)HexNAc(3)": "NT=Hex(7)HexNAc(3);AC=1514;", "dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1);AC=1515;", "Hex(5)HexNAc(4)Me(2)Pent(1)": "NT=Hex(5)HexNAc(4)Me(2)Pent(1);AC=1516;", "Hex(3)HexNAc(6)Sulf(1)": "NT=Hex(3)HexNAc(6)Sulf(1);AC=1517;", "dHex(1)Hex(6)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(6)HexNAc(3)Sulf(1);AC=1518;", "dHex(1)Hex(4)HexNAc(5)": "NT=dHex(1)Hex(4)HexNAc(5);AC=1519;", "dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1);AC=1520;", "Hex(7)HexNAc(3)Phos(1)": "NT=Hex(7)HexNAc(3)Phos(1);AC=1521;", "Hex(6)HexNAc(4)Me(3)": "NT=Hex(6)HexNAc(4)Me(3);AC=1522;", "dHex(2)Hex(4)HexNAc(4)Sulf(1)": "NT=dHex(2)Hex(4)HexNAc(4)Sulf(1);AC=1523;", "Hex(4)HexNAc(3)NeuAc(2)": "NT=Hex(4)HexNAc(3)NeuAc(2);AC=1524;", "dHex(1)Hex(3)HexNAc(4)Pent(3)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(3);AC=1525;", "dHex(2)Hex(5)HexNAc(3)Pent(1)": "NT=dHex(2)Hex(5)HexNAc(3)Pent(1);AC=1526;", "dHex(1)Hex(5)HexNAc(4)Sulf(1)": "NT=dHex(1)Hex(5)HexNAc(4)Sulf(1);AC=1527;", "dHex(2)Hex(3)HexNAc(4)Pent(2)": "NT=dHex(2)Hex(3)HexNAc(4)Pent(2);AC=1528;", "dHex(1)Hex(5)HexNAc(3)NeuAc(1)": "NT=dHex(1)Hex(5)HexNAc(3)NeuAc(1);AC=1529;", "Hex(3)HexNAc(6)Sulf(2)": "NT=Hex(3)HexNAc(6)Sulf(2);AC=1530;", "Hex(9)HexNAc(2)": "NT=Hex(9)HexNAc(2);AC=1531;", "Hex(4)HexNAc(6)": "NT=Hex(4)HexNAc(6);AC=1532;", "dHex(3)Hex(3)HexNAc(4)Pent(1)": "NT=dHex(3)Hex(3)HexNAc(4)Pent(1);AC=1533;", "dHex(1)Hex(5)HexNAc(3)NeuGc(1)": "NT=dHex(1)Hex(5)HexNAc(3)NeuGc(1);AC=1534;", "dHex(2)Hex(4)HexNAc(4)Pent(1)": "NT=dHex(2)Hex(4)HexNAc(4)Pent(1);AC=1535;", "dHex(1)Hex(4)HexNAc(5)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(5)Sulf(1);AC=1536;", "dHex(1)Hex(7)HexNAc(3)": "NT=dHex(1)Hex(7)HexNAc(3);AC=1537;", "dHex(1)Hex(5)HexNAc(4)Pent(1)": "NT=dHex(1)Hex(5)HexNAc(4)Pent(1);AC=1538;", "dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2)": "NT=dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2);AC=1539;", "Hex(3)HexNAc(7)": "NT=Hex(3)HexNAc(7);AC=1540;", "dHex(2)Hex(5)HexNAc(4)": "NT=dHex(2)Hex(5)HexNAc(4);AC=1541;", "dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1);AC=1542;", "dHex(1)Hex(5)HexNAc(4)Sulf(2)": "NT=dHex(1)Hex(5)HexNAc(4)Sulf(2);AC=1543;", "dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1)": "NT=dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1);AC=1544;", "Hex(5)HexNAc(4)NeuGc(1)": "NT=Hex(5)HexNAc(4)NeuGc(1);AC=1545;", "dHex(1)Hex(3)HexNAc(6)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(6)Sulf(1);AC=1546;", "dHex(1)Hex(6)HexNAc(4)": "NT=dHex(1)Hex(6)HexNAc(4);AC=1547;", "dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1);AC=1548;", "Hex(7)HexNAc(4)": "NT=Hex(7)HexNAc(4);AC=1549;", "dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1)": "NT=dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1);AC=1550;", "Hex(4)HexNAc(5)NeuAc(1)": "NT=Hex(4)HexNAc(5)NeuAc(1);AC=1551;", "Hex(6)HexNAc(4)Me(3)Pent(1)": "NT=Hex(6)HexNAc(4)Me(3)Pent(1);AC=1552;", "dHex(1)Hex(7)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(7)HexNAc(3)Sulf(1);AC=1553;", "dHex(1)Hex(7)HexNAc(3)Phos(1)": "NT=dHex(1)Hex(7)HexNAc(3)Phos(1);AC=1554;", "dHex(1)Hex(5)HexNAc(5)": "NT=dHex(1)Hex(5)HexNAc(5);AC=1555;", "dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1);AC=1556;", "dHex(3)Hex(4)HexNAc(4)Sulf(1)": "NT=dHex(3)Hex(4)HexNAc(4)Sulf(1);AC=1557;", "Hex(3)HexNAc(7)Sulf(1)": "NT=Hex(3)HexNAc(7)Sulf(1);AC=1558;", "Hex(6)HexNAc(5)": "NT=Hex(6)HexNAc(5);AC=1559;", "Hex(5)HexNAc(4)NeuAc(1)Sulf(1)": "NT=Hex(5)HexNAc(4)NeuAc(1)Sulf(1);AC=1560;", "Hex(3)HexNAc(6)NeuAc(1)": "NT=Hex(3)HexNAc(6)NeuAc(1);AC=1561;", "dHex(2)Hex(3)HexNAc(6)": "NT=dHex(2)Hex(3)HexNAc(6);AC=1562;", "Hex(1)HexNAc(1)NeuGc(1)": "NT=Hex(1)HexNAc(1)NeuGc(1);AC=1563;", "dHex(1)Hex(2)HexNAc(1)": "NT=dHex(1)Hex(2)HexNAc(1);AC=1564;", "HexNAc(3)Sulf(1)": "NT=HexNAc(3)Sulf(1);AC=1565;", "Hex(3)HexNAc(1)": "NT=Hex(3)HexNAc(1);AC=1566;", "Hex(1)HexNAc(1)Kdn(1)Sulf(1)": "NT=Hex(1)HexNAc(1)Kdn(1)Sulf(1);AC=1567;", "HexNAc(2)NeuAc(1)": "NT=HexNAc(2)NeuAc(1);AC=1568;", "HexNAc(1)Kdn(2)": "NT=HexNAc(1)Kdn(2);AC=1570;", "Hex(3)HexNAc(1)Me(1)": "NT=Hex(3)HexNAc(1)Me(1);AC=1571;", "Hex(2)HexA(1)Pent(1)Sulf(1)": "NT=Hex(2)HexA(1)Pent(1)Sulf(1);AC=1572;", "HexNAc(2)NeuGc(1)": "NT=HexNAc(2)NeuGc(1);AC=1573;", "Hex(4)Phos(1)": "NT=Hex(4)Phos(1);AC=1575;", "Hex(1)HexNAc(1)NeuAc(1)Sulf(1)": "NT=Hex(1)HexNAc(1)NeuAc(1)Sulf(1);AC=1577;", "Hex(1)HexA(1)HexNAc(2)": "NT=Hex(1)HexA(1)HexNAc(2);AC=1578;", "dHex(1)Hex(2)HexNAc(1)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(1)Sulf(1);AC=1579;", "dHex(1)HexNAc(3)": "NT=dHex(1)HexNAc(3);AC=1580;", "dHex(1)Hex(1)HexNAc(1)Kdn(1)": "NT=dHex(1)Hex(1)HexNAc(1)Kdn(1);AC=1581;", "Hex(1)HexNAc(3)": "NT=Hex(1)HexNAc(3);AC=1582;", "HexNAc(2)NeuAc(1)Sulf(1)": "NT=HexNAc(2)NeuAc(1)Sulf(1);AC=1583;", "dHex(2)Hex(3)": "NT=dHex(2)Hex(3);AC=1584;", "Hex(2)HexA(1)HexNAc(1)Sulf(1)": "NT=Hex(2)HexA(1)HexNAc(1)Sulf(1);AC=1585;", "dHex(2)Hex(2)HexA(1)": "NT=dHex(2)Hex(2)HexA(1);AC=1586;", "dHex(1)Hex(1)HexNAc(2)Sulf(1)": "NT=dHex(1)Hex(1)HexNAc(2)Sulf(1);AC=1587;", "dHex(1)Hex(1)HexNAc(1)NeuAc(1)": "NT=dHex(1)Hex(1)HexNAc(1)NeuAc(1);AC=1588;", "Hex(2)HexNAc(2)Sulf(1)": "NT=Hex(2)HexNAc(2)Sulf(1);AC=1589;", "Hex(5)": "NT=Hex(5);AC=1590;", "HexNAc(4)": "NT=HexNAc(4);AC=1591;", "HexNAc(1)NeuGc(2)": "NT=HexNAc(1)NeuGc(2);AC=1592;", "dHex(1)Hex(1)HexNAc(1)NeuGc(1)": "NT=dHex(1)Hex(1)HexNAc(1)NeuGc(1);AC=1593;", "dHex(2)Hex(2)HexNAc(1)": "NT=dHex(2)Hex(2)HexNAc(1);AC=1594;", "Hex(2)HexNAc(1)NeuGc(1)": "NT=Hex(2)HexNAc(1)NeuGc(1);AC=1595;", "dHex(1)Hex(3)HexNAc(1)": "NT=dHex(1)Hex(3)HexNAc(1);AC=1596;", "dHex(1)Hex(2)HexA(1)HexNAc(1)": "NT=dHex(1)Hex(2)HexA(1)HexNAc(1);AC=1597;", "Hex(1)HexNAc(3)Sulf(1)": "NT=Hex(1)HexNAc(3)Sulf(1);AC=1598;", "Hex(4)HexNAc(1)": "NT=Hex(4)HexNAc(1);AC=1599;", "Hex(1)HexNAc(2)NeuAc(1)": "NT=Hex(1)HexNAc(2)NeuAc(1);AC=1600;", "Hex(1)HexNAc(2)NeuGc(1)": "NT=Hex(1)HexNAc(2)NeuGc(1);AC=1602;", "Hex(5)Phos(1)": "NT=Hex(5)Phos(1);AC=1604;", "dHex(2)Hex(1)HexNAc(1)Kdn(1)": "NT=dHex(2)Hex(1)HexNAc(1)Kdn(1);AC=1606;", "dHex(1)Hex(3)HexNAc(1)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(1)Sulf(1);AC=1607;", "dHex(1)Hex(1)HexNAc(3)": "NT=dHex(1)Hex(1)HexNAc(3);AC=1608;", "dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1)": "NT=dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1);AC=1609;", "Hex(2)HexNAc(3)": "NT=Hex(2)HexNAc(3);AC=1610;", "Hex(1)HexNAc(2)NeuAc(1)Sulf(1)": "NT=Hex(1)HexNAc(2)NeuAc(1)Sulf(1);AC=1611;", "dHex(2)Hex(4)": "NT=dHex(2)Hex(4);AC=1612;", "dHex(2)HexNAc(2)Kdn(1)": "NT=dHex(2)HexNAc(2)Kdn(1);AC=1614;", "dHex(1)Hex(2)HexNAc(2)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(2)Sulf(1);AC=1615;", "dHex(1)HexNAc(4)": "NT=dHex(1)HexNAc(4);AC=1616;", "Hex(1)HexNAc(1)NeuAc(1)NeuGc(1)": "NT=Hex(1)HexNAc(1)NeuAc(1)NeuGc(1);AC=1617;", "dHex(1)Hex(1)HexNAc(2)Kdn(1)": "NT=dHex(1)Hex(1)HexNAc(2)Kdn(1);AC=1618;", "Hex(1)HexNAc(1)NeuGc(2)": "NT=Hex(1)HexNAc(1)NeuGc(2);AC=1619;", "Hex(1)HexNAc(1)NeuAc(2)Ac(1)": "NT=Hex(1)HexNAc(1)NeuAc(2)Ac(1);AC=1620;", "dHex(2)Hex(2)HexA(1)HexNAc(1)": "NT=dHex(2)Hex(2)HexA(1)HexNAc(1);AC=1621;", "dHex(1)Hex(1)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(1)HexNAc(3)Sulf(1);AC=1622;", "Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1)": "NT=Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1);AC=1623;", "dHex(1)Hex(1)HexNAc(2)NeuAc(1)": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(1);AC=1624;", "dHex(1)Hex(3)HexA(1)HexNAc(1)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(1);AC=1625;", "Hex(2)HexNAc(3)Sulf(1)": "NT=Hex(2)HexNAc(3)Sulf(1);AC=1626;", "Hex(5)HexNAc(1)": "NT=Hex(5)HexNAc(1);AC=1627;", "HexNAc(5)": "NT=HexNAc(5);AC=1628;", "Hex(1)HexNAc(1)NeuAc(2)Ac(2)": "NT=Hex(1)HexNAc(1)NeuAc(2)Ac(2);AC=1630;", "Hex(2)HexNAc(2)NeuGc(1)": "NT=Hex(2)HexNAc(2)NeuGc(1);AC=1631;", "Hex(5)Phos(3)": "NT=Hex(5)Phos(3);AC=1632;", "Hex(6)Phos(1)": "NT=Hex(6)Phos(1);AC=1633;", "dHex(1)Hex(2)HexA(1)HexNAc(2)": "NT=dHex(1)Hex(2)HexA(1)HexNAc(2);AC=1634;", "dHex(2)Hex(3)HexNAc(1)Sulf(1)": "NT=dHex(2)Hex(3)HexNAc(1)Sulf(1);AC=1635;", "Hex(1)HexNAc(3)NeuAc(1)": "NT=Hex(1)HexNAc(3)NeuAc(1);AC=1636;", "dHex(2)Hex(1)HexNAc(3)": "NT=dHex(2)Hex(1)HexNAc(3);AC=1637;", "Hex(1)HexNAc(3)NeuGc(1)": "NT=Hex(1)HexNAc(3)NeuGc(1);AC=1638;", "dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1);AC=1639;", "dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1);AC=1640;", "dHex(1)Hex(1)HexA(1)HexNAc(3)": "NT=dHex(1)Hex(1)HexA(1)HexNAc(3);AC=1641;", "Hex(2)HexNAc(2)NeuAc(1)Sulf(1)": "NT=Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1642;", "dHex(2)Hex(2)HexNAc(2)Sulf(1)": "NT=dHex(2)Hex(2)HexNAc(2)Sulf(1);AC=1643;", "dHex(2)Hex(1)HexNAc(2)Kdn(1)": "NT=dHex(2)Hex(1)HexNAc(2)Kdn(1);AC=1644;", "dHex(1)Hex(1)HexNAc(4)": "NT=dHex(1)Hex(1)HexNAc(4);AC=1645;", "Hex(2)HexNAc(4)": "NT=Hex(2)HexNAc(4);AC=1646;", "Hex(2)HexNAc(1)NeuGc(2)": "NT=Hex(2)HexNAc(1)NeuGc(2);AC=1647;", "dHex(2)Hex(4)HexNAc(1)": "NT=dHex(2)Hex(4)HexNAc(1);AC=1648;", "Hex(1)HexNAc(2)NeuAc(2)": "NT=Hex(1)HexNAc(2)NeuAc(2);AC=1649;", "dHex(2)Hex(1)HexNAc(2)NeuAc(1)": "NT=dHex(2)Hex(1)HexNAc(2)NeuAc(1);AC=1650;", "dHex(1)Hex(2)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(3)Sulf(1);AC=1651;", "dHex(1)HexNAc(5)": "NT=dHex(1)HexNAc(5);AC=1652;", "dHex(2)Hex(1)HexNAc(2)NeuGc(1)": "NT=dHex(2)Hex(1)HexNAc(2)NeuGc(1);AC=1653;", "dHex(3)Hex(2)HexNAc(2)": "NT=dHex(3)Hex(2)HexNAc(2);AC=1654;", "Hex(3)HexNAc(3)Sulf(1)": "NT=Hex(3)HexNAc(3)Sulf(1);AC=1655;", "dHex(2)Hex(2)HexNAc(2)Sulf(2)": "NT=dHex(2)Hex(2)HexNAc(2)Sulf(2);AC=1656;", "dHex(1)Hex(2)HexNAc(2)NeuGc(1)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(1);AC=1657;", "dHex(1)Hex(1)HexNAc(3)NeuAc(1)": "NT=dHex(1)Hex(1)HexNAc(3)NeuAc(1);AC=1658;", "Hex(6)Phos(3)": "NT=Hex(6)Phos(3);AC=1659;", "dHex(1)Hex(3)HexA(1)HexNAc(2)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(2);AC=1660;", "dHex(1)Hex(1)HexNAc(3)NeuGc(1)": "NT=dHex(1)Hex(1)HexNAc(3)NeuGc(1);AC=1661;", "Hex(1)HexNAc(2)NeuAc(2)Sulf(1)": "NT=Hex(1)HexNAc(2)NeuAc(2)Sulf(1);AC=1662;", "dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1)": "NT=dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1);AC=1663;", "Hex(1)HexNAc(1)NeuAc(3)": "NT=Hex(1)HexNAc(1)NeuAc(3);AC=1664;", "Hex(2)HexNAc(3)NeuGc(1)": "NT=Hex(2)HexNAc(3)NeuGc(1);AC=1665;", "dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1666;", "dHex(3)Hex(1)HexNAc(2)Kdn(1)": "NT=dHex(3)Hex(1)HexNAc(2)Kdn(1);AC=1667;", "dHex(2)Hex(3)HexNAc(2)Sulf(1)": "NT=dHex(2)Hex(3)HexNAc(2)Sulf(1);AC=1668;", "dHex(2)Hex(2)HexNAc(2)Kdn(1)": "NT=dHex(2)Hex(2)HexNAc(2)Kdn(1);AC=1669;", "dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1)": "NT=dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1);AC=1670;", "dHex(1)Hex(2)HexNAc(4)": "NT=dHex(1)Hex(2)HexNAc(4);AC=1671;", "Hex(1)HexNAc(1)NeuGc(3)": "NT=Hex(1)HexNAc(1)NeuGc(3);AC=1672;", "dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1);AC=1673;", "dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1);AC=1674;", "dHex(1)Hex(1)HexNAc(2)NeuAc(2)": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(2);AC=1675;", "dHex(3)HexNAc(3)Kdn(1)": "NT=dHex(3)HexNAc(3)Kdn(1);AC=1676;", "Hex(2)HexNAc(3)NeuAc(1)Sulf(1)": "NT=Hex(2)HexNAc(3)NeuAc(1)Sulf(1);AC=1678;", "dHex(2)Hex(2)HexNAc(3)Sulf(1)": "NT=dHex(2)Hex(2)HexNAc(3)Sulf(1);AC=1679;", "dHex(2)HexNAc(5)": "NT=dHex(2)HexNAc(5);AC=1680;", "Hex(2)HexNAc(2)NeuAc(2)": "NT=Hex(2)HexNAc(2)NeuAc(2);AC=1681;", "dHex(2)Hex(2)HexNAc(2)NeuAc(1)": "NT=dHex(2)Hex(2)HexNAc(2)NeuAc(1);AC=1682;", "dHex(1)Hex(3)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(3)Sulf(1);AC=1683;", "dHex(2)Hex(2)HexNAc(2)NeuGc(1)": "NT=dHex(2)Hex(2)HexNAc(2)NeuGc(1);AC=1684;", "Hex(2)HexNAc(5)": "NT=Hex(2)HexNAc(5);AC=1685;", "dHex(1)Hex(3)HexNAc(2)NeuGc(1)": "NT=dHex(1)Hex(3)HexNAc(2)NeuGc(1);AC=1686;", "Hex(1)HexNAc(3)NeuAc(2)": "NT=Hex(1)HexNAc(3)NeuAc(2);AC=1687;", "dHex(1)Hex(2)HexNAc(3)NeuAc(1)": "NT=dHex(1)Hex(2)HexNAc(3)NeuAc(1);AC=1688;", "dHex(3)Hex(2)HexNAc(3)": "NT=dHex(3)Hex(2)HexNAc(3);AC=1689;", "Hex(7)Phos(3)": "NT=Hex(7)Phos(3);AC=1690;", "dHex(1)Hex(4)HexA(1)HexNAc(2)": "NT=dHex(1)Hex(4)HexA(1)HexNAc(2);AC=1691;", "Hex(3)HexNAc(3)NeuAc(1)": "NT=Hex(3)HexNAc(3)NeuAc(1);AC=1692;", "dHex(1)Hex(3)HexA(2)HexNAc(2)": "NT=dHex(1)Hex(3)HexA(2)HexNAc(2);AC=1693;", "Hex(2)HexNAc(2)NeuAc(2)Sulf(1)": "NT=Hex(2)HexNAc(2)NeuAc(2)Sulf(1);AC=1694;", "dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1)": "NT=dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1695;", "Hex(3)HexNAc(3)NeuGc(1)": "NT=Hex(3)HexNAc(3)NeuGc(1);AC=1696;", "dHex(4)Hex(1)HexNAc(2)Kdn(1)": "NT=dHex(4)Hex(1)HexNAc(2)Kdn(1);AC=1697;", "dHex(3)Hex(2)HexNAc(2)Kdn(1)": "NT=dHex(3)Hex(2)HexNAc(2)Kdn(1);AC=1698;", "dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1)": "NT=dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1);AC=1699;", "Hex(2)HexNAc(4)NeuAc(1)": "NT=Hex(2)HexNAc(4)NeuAc(1);AC=1700;", "dHex(2)Hex(2)HexNAc(4)": "NT=dHex(2)Hex(2)HexNAc(4);AC=1701;", "dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1)": "NT=dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1);AC=1702;", "dHex(4)HexNAc(3)Kdn(1)": "NT=dHex(4)HexNAc(3)Kdn(1);AC=1703;", "Hex(2)HexNAc(1)NeuGc(3)": "NT=Hex(2)HexNAc(1)NeuGc(3);AC=1705;", "dHex(4)Hex(1)HexNAc(1)Kdn(2)": "NT=dHex(4)Hex(1)HexNAc(1)Kdn(2);AC=1706;", "dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1);AC=1707;", "dHex(1)Hex(2)HexNAc(2)NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(2);AC=1708;", "dHex(3)Hex(1)HexNAc(3)Kdn(1)": "NT=dHex(3)Hex(1)HexNAc(3)Kdn(1);AC=1709;", "Hex(3)HexNAc(3)NeuAc(1)Sulf(1)": "NT=Hex(3)HexNAc(3)NeuAc(1)Sulf(1);AC=1711;", "Hex(3)HexNAc(2)NeuAc(2)": "NT=Hex(3)HexNAc(2)NeuAc(2);AC=1712;", "Hex(3)HexNAc(3)NeuGc(1)Sulf(1)": "NT=Hex(3)HexNAc(3)NeuGc(1)Sulf(1);AC=1713;", "dHex(1)Hex(2)HexNAc(2)NeuGc(2)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(2);AC=1714;", "dHex(2)Hex(3)HexNAc(2)NeuGc(1)": "NT=dHex(2)Hex(3)HexNAc(2)NeuGc(1);AC=1715;", "dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1);AC=1716;", "Hex(2)HexNAc(3)NeuAc(2)": "NT=Hex(2)HexNAc(3)NeuAc(2);AC=1717;", "dHex(2)Hex(2)HexNAc(3)NeuAc(1)": "NT=dHex(2)Hex(2)HexNAc(3)NeuAc(1);AC=1718;", "dHex(4)Hex(2)HexNAc(3)": "NT=dHex(4)Hex(2)HexNAc(3);AC=1719;", "Hex(2)HexNAc(3)NeuAc(1)NeuGc(1)": "NT=Hex(2)HexNAc(3)NeuAc(1)NeuGc(1);AC=1720;", "dHex(2)Hex(2)HexNAc(3)NeuGc(1)": "NT=dHex(2)Hex(2)HexNAc(3)NeuGc(1);AC=1721;", "dHex(3)Hex(3)HexNAc(3)": "NT=dHex(3)Hex(3)HexNAc(3);AC=1722;", "Hex(8)Phos(3)": "NT=Hex(8)Phos(3);AC=1723;", "dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1)": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1);AC=1724;", "Hex(2)HexNAc(3)NeuGc(2)": "NT=Hex(2)HexNAc(3)NeuGc(2);AC=1725;", "dHex(4)Hex(2)HexNAc(2)Kdn(1)": "NT=dHex(4)Hex(2)HexNAc(2)Kdn(1);AC=1726;", "dHex(1)Hex(2)HexNAc(4)NeuAc(1)": "NT=dHex(1)Hex(2)HexNAc(4)NeuAc(1);AC=1727;", "dHex(3)Hex(2)HexNAc(4)": "NT=dHex(3)Hex(2)HexNAc(4);AC=1728;", "Hex(1)HexNAc(1)NeuGc(4)": "NT=Hex(1)HexNAc(1)NeuGc(4);AC=1729;", "dHex(4)Hex(1)HexNAc(3)Kdn(1)": "NT=dHex(4)Hex(1)HexNAc(3)Kdn(1);AC=1730;", "Hex(4)HexNAc(4)Sulf(2)": "NT=Hex(4)HexNAc(4)Sulf(2);AC=1732;", "dHex(3)Hex(2)HexNAc(3)Kdn(1)": "NT=dHex(3)Hex(2)HexNAc(3)Kdn(1);AC=1733;", "dHex(2)Hex(2)HexNAc(5)": "NT=dHex(2)Hex(2)HexNAc(5);AC=1735;", "dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1);AC=1736;", "dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1);AC=1737;", "Hex(3)HexNAc(3)NeuAc(2)": "NT=Hex(3)HexNAc(3)NeuAc(2);AC=1738;", "dHex(2)Hex(3)HexNAc(3)NeuAc(1)": "NT=dHex(2)Hex(3)HexNAc(3)NeuAc(1);AC=1739;", "dHex(4)Hex(3)HexNAc(3)": "NT=dHex(4)Hex(3)HexNAc(3);AC=1740;", "Hex(9)Phos(3)": "NT=Hex(9)Phos(3);AC=1742;", "dHex(2)HexNAc(7)": "NT=dHex(2)HexNAc(7);AC=1743;", "Hex(2)HexNAc(1)NeuGc(4)": "NT=Hex(2)HexNAc(1)NeuGc(4);AC=1744;", "Hex(3)HexNAc(3)NeuAc(2)Sulf(1)": "NT=Hex(3)HexNAc(3)NeuAc(2)Sulf(1);AC=1745;", "dHex(2)Hex(3)HexNAc(5)": "NT=dHex(2)Hex(3)HexNAc(5);AC=1746;", "dHex(1)Hex(2)HexNAc(2)NeuGc(3)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(3);AC=1747;", "dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1)": "NT=dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1);AC=1748;", "Hex(2)HexNAc(3)NeuAc(3)": "NT=Hex(2)HexNAc(3)NeuAc(3);AC=1749;", "dHex(1)Hex(3)HexNAc(3)NeuAc(2)": "NT=dHex(1)Hex(3)HexNAc(3)NeuAc(2);AC=1750;", "dHex(3)Hex(3)HexNAc(3)NeuAc(1)": "NT=dHex(3)Hex(3)HexNAc(3)NeuAc(1);AC=1751;", "Hex(2)HexNAc(3)NeuGc(3)": "NT=Hex(2)HexNAc(3)NeuGc(3);AC=1752;", "Hex(10)Phos(3)": "NT=Hex(10)Phos(3);AC=1753;", "dHex(1)Hex(2)HexNAc(4)NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(4)NeuAc(2);AC=1754;", "Hex(1)HexNAc(1)NeuGc(5)": "NT=Hex(1)HexNAc(1)NeuGc(5);AC=1755;", "Hex(4)HexNAc(4)NeuAc(1)Sulf(2)": "NT=Hex(4)HexNAc(4)NeuAc(1)Sulf(2);AC=1756;", "Hex(4)HexNAc(4)NeuGc(1)Sulf(2)": "NT=Hex(4)HexNAc(4)NeuGc(1)Sulf(2);AC=1757;", "dHex(2)Hex(3)HexNAc(3)NeuAc(2)": "NT=dHex(2)Hex(3)HexNAc(3)NeuAc(2);AC=1758;", "Hex(4)HexNAc(4)NeuAc(1)Sulf(3)": "NT=Hex(4)HexNAc(4)NeuAc(1)Sulf(3);AC=1759;", "dHex(2)Hex(2)HexNAc(2)": "NT=dHex(2)Hex(2)HexNAc(2);AC=1760;", "dHex(1)Hex(3)HexNAc(2)": "NT=dHex(1)Hex(3)HexNAc(2);AC=1761;", "dHex(1)Hex(2)HexNAc(3)": "NT=dHex(1)Hex(2)HexNAc(3);AC=1762;", "Hex(3)HexNAc(3)": "NT=Hex(3)HexNAc(3);AC=1763;", "dHex(1)Hex(3)HexNAc(2)Sulf(1)": "NT=dHex(1)Hex(3)HexNAc(2)Sulf(1);AC=1764;", "dHex(2)Hex(3)HexNAc(2)": "NT=dHex(2)Hex(3)HexNAc(2);AC=1765;", "dHex(1)Hex(4)HexNAc(2)": "NT=dHex(1)Hex(4)HexNAc(2);AC=1766;", "dHex(2)Hex(2)HexNAc(3)": "NT=dHex(2)Hex(2)HexNAc(3);AC=1767;", "dHex(1)Hex(3)HexNAc(3)": "NT=dHex(1)Hex(3)HexNAc(3);AC=1768;", "Hex(4)HexNAc(3)": "NT=Hex(4)HexNAc(3);AC=1769;", "dHex(2)Hex(4)HexNAc(2)": "NT=dHex(2)Hex(4)HexNAc(2);AC=1770;", "dHex(2)Hex(3)HexNAc(3)": "NT=dHex(2)Hex(3)HexNAc(3);AC=1771;", "Hex(3)HexNAc(5)": "NT=Hex(3)HexNAc(5);AC=1772;", "Hex(4)HexNAc(3)NeuAc(1)": "NT=Hex(4)HexNAc(3)NeuAc(1);AC=1773;", "dHex(2)Hex(3)HexNAc(4)": "NT=dHex(2)Hex(3)HexNAc(4);AC=1774;", "dHex(1)Hex(3)HexNAc(5)": "NT=dHex(1)Hex(3)HexNAc(5);AC=1775;", "Hex(3)HexNAc(6)": "NT=Hex(3)HexNAc(6);AC=1776;", "Hex(4)HexNAc(4)NeuAc(1)": "NT=Hex(4)HexNAc(4)NeuAc(1);AC=1777;", "dHex(2)Hex(4)HexNAc(4)": "NT=dHex(2)Hex(4)HexNAc(4);AC=1778;", "Hex(6)HexNAc(4)": "NT=Hex(6)HexNAc(4);AC=1779;", "Hex(5)HexNAc(5)": "NT=Hex(5)HexNAc(5);AC=1780;", "dHex(1)Hex(3)HexNAc(6)": "NT=dHex(1)Hex(3)HexNAc(6);AC=1781;", "dHex(1)Hex(4)HexNAc(4)NeuAc(1)": "NT=dHex(1)Hex(4)HexNAc(4)NeuAc(1);AC=1782;", "dHex(3)Hex(4)HexNAc(4)": "NT=dHex(3)Hex(4)HexNAc(4);AC=1783;", "dHex(1)Hex(3)HexNAc(5)NeuAc(1)": "NT=dHex(1)Hex(3)HexNAc(5)NeuAc(1);AC=1784;", "dHex(2)Hex(4)HexNAc(5)": "NT=dHex(2)Hex(4)HexNAc(5);AC=1785;", "Hex(1)HexNAc(1)NeuAc(1)Ac(1)": "NT=Hex(1)HexNAc(1)NeuAc(1)Ac(1);AC=1786;", "Label:13C(2)15N(2)": "NT=Label:13C(2)15N(2);AC=1787;", "Xlink:DSS[155]": "NT=Xlink:DSS[155];AC=1789;", "NQIGG": "NT=NQIGG;AC=1799;", "Carboxyethylpyrrole": "NT=Carboxyethylpyrrole;AC=1800;", "Fluorescein-tyramine": "NT=Fluorescein-tyramine;AC=1801;", "GEE": "NT=GEE;AC=1824;", "RNPXL": "NT=RNPXL;AC=1825;", "Glu->pyro-Glu+Methyl": "NT=Glu->pyro-Glu+Methyl;AC=1826;", "Glu->pyro-Glu+Methyl:2H(2)13C(1)": "NT=Glu->pyro-Glu+Methyl:2H(2)13C(1);AC=1827;", "LRGG+methyl": "NT=LRGG+methyl;AC=1828;", "LRGG+dimethyl": "NT=LRGG+dimethyl;AC=1829;", "Biotin-tyramide": "NT=Biotin-tyramide;AC=1830;", "Tris": "NT=Tris;AC=1831;", "IASD": "NT=IASD;AC=1832;", "NP40": "NT=NP40;AC=1833;", "Tween20": "NT=Tween20;AC=1834;", "Tween80": "NT=Tween80;AC=1835;", "Triton": "NT=Triton;AC=1836;", "Brij35": "NT=Brij35;AC=1837;", "Brij58": "NT=Brij58;AC=1838;", "betaFNA": "NT=betaFNA;AC=1839;", "dHex(1)Hex(7)HexNAc(4)": "NT=dHex(1)Hex(7)HexNAc(4);AC=1840;", "Biotin:Thermo-21328": "NT=Biotin:Thermo-21328;AC=1841;", "Xlink:DSSO": "NT=Xlink:DSSO;AC=1842;", "PhosphoCytidine": "NT=PhosphoCytidine;AC=1843;", "Xlink:EGS": "NT=Xlink:EGS;AC=1844;", "AzidoF": "NT=AzidoF;AC=1845;", "Dimethylaminoethyl": "NT=Dimethylaminoethyl;AC=1846;", "Gluratylation": "NT=Gluratylation;AC=1848;", "hydroxyisobutyryl": "NT=hydroxyisobutyryl;AC=1849;", "MeMePhosphorothioate": "NT=MeMePhosphorothioate;AC=1868;", "Cation:Fe[III]": "NT=Cation:Fe[III];AC=1870;", "DTT": "NT=DTT;AC=1871;", "DYn-2": "NT=DYn-2;AC=1872;", "MesitylOxide": "NT=MesitylOxide;AC=1873;", "methylol": "NT=methylol;AC=1875;", "Xlink:DSS": "NT=Xlink:DSS;AC=1876;", "Xlink:DSS[259]": "NT=Xlink:DSS[259];AC=1877;", "Xlink:DSSO[176]": "NT=Xlink:DSSO[176];AC=1878;", "Xlink:DSSO[175]": "NT=Xlink:DSSO[175];AC=1879;", "Xlink:DSSO[279]": "NT=Xlink:DSSO[279];AC=1880;", "Xlink:DSSO[54]": "NT=Xlink:DSSO[54];AC=1881;", "Xlink:DSSO[86]": "NT=Xlink:DSSO[86];AC=1882;", "Xlink:DSSO[104]": "NT=Xlink:DSSO[104];AC=1883;", "Xlink:BuUrBu": "NT=Xlink:BuUrBu;AC=1884;", "Xlink:BuUrBu[111]": "NT=Xlink:BuUrBu[111];AC=1885;", "Xlink:BuUrBu[85]": "NT=Xlink:BuUrBu[85];AC=1886;", "Xlink:BuUrBu[213]": "NT=Xlink:BuUrBu[213];AC=1887;", "Xlink:BuUrBu[214]": "NT=Xlink:BuUrBu[214];AC=1888;", "Xlink:BuUrBu[317]": "NT=Xlink:BuUrBu[317];AC=1889;", "Xlink:DTBP": "NT=Xlink:DTBP;AC=1891;", "Xlink:DST": "NT=Xlink:DST;AC=1892;", "Xlink:DTSSP": "NT=Xlink:DTSSP;AC=1893;", "Xlink:SMCC": "NT=Xlink:SMCC;AC=1895;", "Xlink:DSSO[158]": "NT=Xlink:DSSO[158];AC=1896;", "Xlink:EGS[226]": "NT=Xlink:EGS[226];AC=1897;", "Xlink:DSS[138]": "NT=Xlink:DSS[138];AC=1898;", "Xlink:BuUrBu[196]": "NT=Xlink:BuUrBu[196];AC=1899;", "Xlink:DTBP[172]": "NT=Xlink:DTBP[172];AC=1900;", "Xlink:DST[114]": "NT=Xlink:DST[114];AC=1901;", "Xlink:DTSSP[174]": "NT=Xlink:DTSSP[174];AC=1902;", "Xlink:SMCC[219]": "NT=Xlink:SMCC[219];AC=1903;", "Xlink:BS2G[96]": "NT=Xlink:BS2G[96];AC=1905;", "Xlink:BS2G[113]": "NT=Xlink:BS2G[113];AC=1906;", "Xlink:BS2G[114]": "NT=Xlink:BS2G[114];AC=1907;", "Xlink:BS2G[217]": "NT=Xlink:BS2G[217];AC=1908;", "Xlink:BS2G": "NT=Xlink:BS2G;AC=1909;", "Cation:Al[III]": "NT=Cation:Al[III];AC=1910;", "Xlink:DMP[139]": "NT=Xlink:DMP[139];AC=1911;", "Xlink:DMP[122]": "NT=Xlink:DMP[122];AC=1912;", "glyoxalAGE": "NT=glyoxalAGE;AC=1913;", "Met->AspSA": "NT=Met->AspSA;AC=1914;", "Decarboxylation": "NT=Decarboxylation;AC=1915;", "Aspartylurea": "NT=Aspartylurea;AC=1916;", "Formylasparagine": "NT=Formylasparagine;AC=1917;", "Carbonyl": "NT=Carbonyl;AC=1918;", "AFB1_Dialdehyde": "NT=AFB1_Dialdehyde;AC=1920;", "Pro->HAVA": "NT=Pro->HAVA;AC=1922;", "Delta:H(-4)O(2)": "NT=Delta:H(-4)O(2);AC=1923;", "Delta:H(-4)O(3)": "NT=Delta:H(-4)O(3);AC=1924;", "Delta:O(4)": "NT=Delta:O(4);AC=1925;", "Delta:H(4)C(3)O(2)": "NT=Delta:H(4)C(3)O(2);AC=1926;", "Delta:H(4)C(5)O(1)": "NT=Delta:H(4)C(5)O(1);AC=1927;", "Delta:H(10)C(8)O(1)": "NT=Delta:H(10)C(8)O(1);AC=1928;", "Delta:H(6)C(7)O(4)": "NT=Delta:H(6)C(7)O(4);AC=1929;", "Pent(2)": "NT=Pent(2);AC=1930;", "Pent(1)HexNAc(1)": "NT=Pent(1)HexNAc(1);AC=1931;", "Hex(2)Sulf(1)": "NT=Hex(2)Sulf(1);AC=1932;", "Hex(1)Pent(2)Me(1)": "NT=Hex(1)Pent(2)Me(1);AC=1933;", "HexNAc(2)Sulf(1)": "NT=HexNAc(2)Sulf(1);AC=1934;", "Hex(1)Pent(3)Me(1)": "NT=Hex(1)Pent(3)Me(1);AC=1935;", "Hex(2)Pent(2)": "NT=Hex(2)Pent(2);AC=1936;", "Hex(2)Pent(2)Me(1)": "NT=Hex(2)Pent(2)Me(1);AC=1937;", "Hex(4)HexA(1)": "NT=Hex(4)HexA(1);AC=1938;", "Hex(2)HexNAc(1)Pent(1)HexA(1)": "NT=Hex(2)HexNAc(1)Pent(1)HexA(1);AC=1939;", "Hex(3)HexNAc(1)HexA(1)": "NT=Hex(3)HexNAc(1)HexA(1);AC=1940;", "Hex(1)HexNAc(2)dHex(2)Sulf(1)": "NT=Hex(1)HexNAc(2)dHex(2)Sulf(1);AC=1941;", "HexA(2)HexNAc(3)": "NT=HexA(2)HexNAc(3);AC=1942;", "dHex(1)Hex(4)HexA(1)": "NT=dHex(1)Hex(4)HexA(1);AC=1943;", "Hex(5)HexA(1)": "NT=Hex(5)HexA(1);AC=1944;", "Hex(4)HexA(1)HexNAc(1)": "NT=Hex(4)HexA(1)HexNAc(1);AC=1945;", "dHex(3)Hex(3)HexNAc(1)": "NT=dHex(3)Hex(3)HexNAc(1);AC=1946;", "Hex(6)HexNAc(1)": "NT=Hex(6)HexNAc(1);AC=1947;", "Hex(1)HexNAc(4)dHex(1)Sulf(1)": "NT=Hex(1)HexNAc(4)dHex(1)Sulf(1);AC=1948;", "dHex(1)Hex(2)HexNAc(1)NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(1)NeuAc(2);AC=1949;", "dHex(3)Hex(3)HexNAc(2)": "NT=dHex(3)Hex(3)HexNAc(2);AC=1950;", "dHex(2)Hex(1)HexNAc(4)Sulf(1)": "NT=dHex(2)Hex(1)HexNAc(4)Sulf(1);AC=1951;", "dHex(1)Hex(2)HexNAc(4)Sulf(2)": "NT=dHex(1)Hex(2)HexNAc(4)Sulf(2);AC=1952;", "Hex(9)": "NT=Hex(9);AC=1953;", "dHex(2)Hex(3)HexNAc(3)Sulf(1)": "NT=dHex(2)Hex(3)HexNAc(3)Sulf(1);AC=1954;", "dHex(2)Hex(5)HexNAc(2)Me(1)": "NT=dHex(2)Hex(5)HexNAc(2)Me(1);AC=1955;", "dHex(2)Hex(2)HexNAc(4)Sulf(2)": "NT=dHex(2)Hex(2)HexNAc(4)Sulf(2);AC=1956;", "Hex(9)HexNAc(1)": "NT=Hex(9)HexNAc(1);AC=1957;", "dHex(3)Hex(2)HexNAc(4)Sulf(2)": "NT=dHex(3)Hex(2)HexNAc(4)Sulf(2);AC=1958;", "Hex(4)HexNAc(4)NeuGc(1)": "NT=Hex(4)HexNAc(4)NeuGc(1);AC=1959;", "dHex(4)Hex(3)HexNAc(2)NeuAc(1)": "NT=dHex(4)Hex(3)HexNAc(2)NeuAc(1);AC=1960;", "Hex(3)HexNAc(5)NeuAc(1)": "NT=Hex(3)HexNAc(5)NeuAc(1);AC=1961;", "Hex(10)HexNAc(1)": "NT=Hex(10)HexNAc(1);AC=1962;", "dHex(1)Hex(8)HexNAc(2)": "NT=dHex(1)Hex(8)HexNAc(2);AC=1963;", "Hex(3)HexNAc(4)NeuAc(2)": "NT=Hex(3)HexNAc(4)NeuAc(2);AC=1964;", "dHex(2)Hex(3)HexNAc(4)NeuAc(1)": "NT=dHex(2)Hex(3)HexNAc(4)NeuAc(1);AC=1965;", "dHex(2)Hex(2)HexNAc(6)Sulf(1)": "NT=dHex(2)Hex(2)HexNAc(6)Sulf(1);AC=1966;", "Hex(5)HexNAc(4)NeuAc(1)Ac(1)": "NT=Hex(5)HexNAc(4)NeuAc(1)Ac(1);AC=1967;", "Hex(3)HexNAc(3)NeuAc(3)": "NT=Hex(3)HexNAc(3)NeuAc(3);AC=1968;", "Hex(5)HexNAc(4)NeuAc(1)Ac(2)": "NT=Hex(5)HexNAc(4)NeuAc(1)Ac(2);AC=1969;", "Unknown:162": "NT=Unknown:162;AC=1970;", "Unknown:177": "NT=Unknown:177;AC=1971;", "Unknown:210": "NT=Unknown:210;AC=1972;", "Unknown:216": "NT=Unknown:216;AC=1973;", "Unknown:234": "NT=Unknown:234;AC=1974;", "Unknown:248": "NT=Unknown:248;AC=1975;", "Unknown:250": "NT=Unknown:250;AC=1976;", "Unknown:302": "NT=Unknown:302;AC=1977;", "Unknown:306": "NT=Unknown:306;AC=1978;", "Unknown:420": "NT=Unknown:420;AC=1979;", "Diethylphosphothione": "NT=Diethylphosphothione;AC=1986;", "Dimethylphosphothione": "NT=Dimethylphosphothione;AC=1987;", "monomethylphosphothione": "NT=monomethylphosphothione;AC=1989;", "CIGG": "NT=CIGG;AC=1990;", "GNLLFLACYCIGG": "NT=GNLLFLACYCIGG;AC=1991;", "serotonylation": "NT=serotonylation;AC=1992;", "TMPP-Ac:13C(9)": "NT=TMPP-Ac:13C(9);AC=1993;", "Xlink:DST[56]": "NT=Xlink:DST[56];AC=1999;", "Xlink:SDA": "NT=Xlink:SDA;AC=2000;", "ZQG": "NT=ZQG;AC=2001;", "Haloxon": "NT=Haloxon;AC=2006;", "Methamidophos-S": "NT=Methamidophos-S;AC=2007;", "Methamidophos-O": "NT=Methamidophos-O;AC=2008;", "Nitrene": "NT=Nitrene;AC=2014;", "shTMT": "NT=shTMT;AC=2015;", "TMTpro": "NT=TMTpro;AC=2016;", "TMTpro_zero": "NT=TMTpro_zero;AC=2017;", "Xlink:EDC": "NT=Xlink:EDC;AC=2018;", "Xlink:Disulfide": "NT=Xlink:Disulfide;AC=2020;", "Ser/Thr-KDO": "NT=Ser/Thr-KDO;AC=2022;", "Andro-H2O": "NT=Andro-H2O;AC=2025;", "Xlink:KQisopeptide": "NT=Xlink:KQisopeptide;AC=2026;", "His+O(2)": "NT=His+O(2);AC=2027;", "Hex(6)HexNAc(5)NeuAc(3)": "NT=Hex(6)HexNAc(5)NeuAc(3);AC=2028;", "Hex(7)HexNAc(6)": "NT=Hex(7)HexNAc(6);AC=2029;", "Met+O(2)": "NT=Met+O(2);AC=2033;", "Gly+O(2)": "NT=Gly+O(2);AC=2034;", "Pro+O(2)": "NT=Pro+O(2);AC=2035;", "Lys+O(2)": "NT=Lys+O(2);AC=2036;", "Glu+O(2)": "NT=Glu+O(2);AC=2037;", "LTX+Lophotoxin": "NT=LTX+Lophotoxin;AC=2039;", "MBS+peptide": "NT=MBS+peptide;AC=2040;", "3-hydroxybenzyl-phosphate": "NT=3-hydroxybenzyl-phosphate;AC=2041;", "phenyl-phosphate": "NT=phenyl-phosphate;AC=2042;", "RBS-ID_Uridine": "NT=RBS-ID_Uridine;AC=2044;", "shTMTpro": "NT=shTMTpro;AC=2050;", "Biotin:Aha-DADPS": "NT=Biotin:Aha-DADPS;AC=2052;", "Biotin:Aha-PC": "NT=Biotin:Aha-PC;AC=2053;", "pRBS-ID_4-thiouridine": "NT=pRBS-ID_4-thiouridine;AC=2054;", "pRBS-ID_6-thioguanosine": "NT=pRBS-ID_6-thioguanosine;AC=2055;", "6C-CysPAT": "NT=6C-CysPAT;AC=2057;", "Xlink:DSPP[210]": "NT=Xlink:DSPP[210];AC=2058;", "Xlink:DSPP[228]": "NT=Xlink:DSPP[228];AC=2059;", "Xlink:DSPP[331]": "NT=Xlink:DSPP[331];AC=2060;", "Xlink:DSPP[226]": "NT=Xlink:DSPP[226];AC=2061;", "DBIA": "NT=DBIA;AC=2062;", "Mono_N\u03b3-propargyl-L-Gln_desthiobiotin": "NT=Mono_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2067;", "Di_L-Glu_N\u03b3-propargyl-L-Gln_desthiobiotin": "NT=Di_L-Glu_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2068;", "Di_L-Gln_N\u03b3-propargyl-L-Gln_desthiobiotin": "NT=Di_L-Gln_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2069;", "L-Gln": "NT=L-Gln;AC=2070;", "Glyceroyl": "NT=Glyceroyl;AC=2072;", "N6pAMP": "NT=N6pAMP;AC=2073;", "DabMal": "NT=DabMal;AC=2074;", "NBF": "NT=NBF;AC=2079;", "DCP": "NT=DCP;AC=2080;", "Ethynylation": "NT=Ethynylation;AC=2081;", "Acetylation": "NT=Acetyl;AC=1;", "Amidation": "NT=Amidated;AC=2;", "Biotinylation": "NT=Biotin;AC=3;", "Iodoacetamide derivative": "NT=Carbamidomethyl;AC=4;", "Carbamylation": "NT=Carbamyl;AC=5;", "Iodoacetic acid derivative": "NT=Carboxymethyl;AC=6;", "Deamidation": "NT=Deamidated;AC=7;", "Gygi ICAT(TM) d0": "NT=ICAT-G;AC=8;", "Gygi ICAT(TM) d8": "NT=ICAT-G:2H(8);AC=9;", "Homoserine": "NT=Met->Hse;AC=10;", "Homoserine lactone": "NT=Met->Hsl;AC=11;", "Applied Biosystems original ICAT(TM) d8": "NT=ICAT-D:2H(8);AC=12;", "Applied Biosystems original ICAT(TM) d0": "NT=ICAT-D;AC=13;", "N-isopropylcarboxamidomethyl": "NT=NIPCAM;AC=17;", "Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine": "NT=PEO-Iodoacetyl-LC-Biotin;AC=20;", "Phosphorylation": "NT=Phospho;AC=21;", "Dehydration": "NT=Dehydrated;AC=23;", "Acrylamide adduct": "NT=Propionamide;AC=24;", "pyridylacetyl": "NT=Pyridylacetyl;AC=25;", "S-carbamoylmethylcysteine cyclization (N-terminus)": "NT=Pyro-carbamidomethyl;AC=26;", "Pyro-glu from E": "NT=Glu->pyro-Glu;AC=27;", "Pyro-glu from Q": "NT=Gln->pyro-Glu;AC=28;", "N-Succinimidyl-2-morpholine acetate": "NT=SMA;AC=29;", "Sodium adduct": "NT=Cation:Na;AC=30;", "S-pyridylethylation": "NT=Pyridylethyl;AC=31;", "Methylation": "NT=Methyl;AC=34;", "Oxidation or Hydroxylation": "NT=Oxidation;AC=35;", "di-Methylation": "NT=Dimethyl;AC=36;", "tri-Methylation": "NT=Trimethyl;AC=37;", "Beta-methylthiolation": "NT=Methylthio;AC=39;", "O-Sulfonation": "NT=Sulfo;AC=40;", "Hexose": "NT=Hex;AC=41;", "N-Acetylhexosamine": "NT=HexNAc;AC=43;", "Farnesylation": "NT=Farnesyl;AC=44;", "Myristoylation": "NT=Myristoyl;AC=45;", "Pyridoxal phosphate": "NT=PyridoxalPhosphate;AC=46;", "Palmitoylation": "NT=Palmitoyl;AC=47;", "Geranyl-geranyl": "NT=GeranylGeranyl;AC=48;", "Flavin adenine dinucleotide": "NT=FAD;AC=50;", "N-acyl diglyceride cysteine": "NT=Tripalmitate;AC=51;", "Guanidination": "NT=Guanidinyl;AC=52;", "4-hydroxynonenal (HNE)": "NT=HNE;AC=53;", "hexuronic acid": "NT=Glucuronyl;AC=54;", "glutathione disulfide": "NT=Glutathione;AC=55;", "Acetate labeling reagent (N-term & K) (heavy form, +3amu)": "NT=Acetyl:2H(3);AC=56;", "Propionate labeling reagent light form (N-term & K)": "NT=Propionyl;AC=58;", "Propionate labeling reagent heavy form (+3amu), N-term & K": "NT=Propionyl:13C(3);AC=59;", "Quaternary amine labeling reagent light form (N-term & K)": "NT=GIST-Quat;AC=60;", "Quaternary amine labeling reagent heavy (+3amu) form, N-term & K": "NT=GIST-Quat:2H(3);AC=61;", "Quaternary amine labeling reagent heavy form (+6amu), N-term & K": "NT=GIST-Quat:2H(6);AC=62;", "Quaternary amine labeling reagent heavy form (+9amu), N-term & K": "NT=GIST-Quat:2H(9);AC=63;", "Succinic anhydride labeling reagent light form (N-term & K)": "NT=Succinyl;AC=64;", "Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K": "NT=Succinyl:2H(4);AC=65;", "Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K": "NT=Succinyl:13C(4);AC=66;", "Iminobiotinylation": "NT=Iminobiotin;AC=89;", "ESP-Tag light d0": "NT=ESP;AC=90;", "ESP-Tag heavy d10": "NT=ESP:2H(10);AC=91;", "IMID d0": "NT=IMID;AC=94;", "IMID d4": "NT=IMID:2H(4);AC=95;", "Acrylamide d3": "NT=Propionamide:2H(3);AC=97;", "Applied Biosystems cleavable ICAT(TM) light": "NT=ICAT-C;AC=105;", "Applied Biosystems cleavable ICAT(TM) heavy": "NT=ICAT-C:13C(9);AC=106;", "Addition of N-formyl met": "NT=FormylMet;AC=107;", "N-ethylmaleimide on cysteines": "NT=Nethylmaleimide;AC=108;", "Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced": "NT=OxLysBiotinRed;AC=112;", "Oxidized lysine biotinylated with biotin-LC-hydrazide": "NT=OxLysBiotin;AC=113;", "Oxidized proline biotinylated with biotin-LC-hydrazide, reduced": "NT=OxProBiotinRed;AC=114;", "Oxidized Proline biotinylated with biotin-LC-hydrazide": "NT=OxProBiotin;AC=115;", "Oxidized arginine biotinylated with biotin-LC-hydrazide": "NT=OxArgBiotin;AC=116;", "Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced": "NT=OxArgBiotinRed;AC=117;", "EDT-iodo-PEO-biotin": "NT=EDT-iodoacetyl-PEO-biotin;AC=118;", "Thio Ether Formation - BTP Adduct": "NT=IBTP;AC=119;", "ubiquitinylation residue": "NT=GG;AC=121;", "Formylation": "NT=Formyl;AC=122;", "N-iodoacetyl, p-chlorobenzyl-12C6-glucamine": "NT=ICAT-H;AC=123;", "N-iodoacetyl, p-chlorobenzyl-13C6-glucamine": "NT=ICAT-H:13C(6);AC=124;", "Cleaved and reduced DSP/DTSSP crosslinker": "NT=Xlink:DTSSP[88];AC=126;", "fluorination": "NT=Fluoro;AC=127;", "5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR)": "NT=Fluorescein;AC=128;", "Iodination": "NT=Iodo;AC=129;", "di-Iodination": "NT=Diiodo;AC=130;", "tri-Iodination": "NT=Triiodo;AC=131;", "(cis-delta 5)-tetradecaenoyl": "NT=Myristoleyl;AC=134;", "(cis,cis-delta 5, delta 8)-tetradecadienoyl": "NT=Myristoyl+Delta:H(-4);AC=135;", "labeling reagent light form (N-term & K)": "NT=Benzoyl;AC=136;", "M5/Man5": "NT=Hex(5)HexNAc(2);AC=137;", "5-dimethylaminonaphthalene-1-sulfonyl": "NT=Dansyl;AC=139;", "ISD a-series (C-Term)": "NT=a-type-ion;AC=140;", "amidination of lysines or N-terminal amines with methyl acetimidate": "NT=Amidine;AC=141;", "HexNAc1dHex1": "NT=HexNAc(1)dHex(1);AC=142;", "HexNAc2": "NT=HexNAc(2);AC=143;", "Hex3": "NT=Hex(3);AC=144;", "HexNAc1dHex2": "NT=HexNAc(1)dHex(2);AC=145;", "Hex1HexNAc1dHex1": "NT=Hex(1)HexNAc(1)dHex(1);AC=146;", "HexNAc2dHex1": "NT=HexNAc(2)dHex(1);AC=147;", "Hex1HexNAc2": "NT=Hex(1)HexNAc(2);AC=148;", "Hex1HexNAc1NeuAc1": "NT=Hex(1)HexNAc(1)NeuAc(1);AC=149;", "HexNAc2dHex2": "NT=HexNAc(2)dHex(2);AC=150;", "Hex1HexNAc2Pent1": "NT=Hex(1)HexNAc(2)Pent(1);AC=151;", "Hex1HexNAc2dHex1": "NT=Hex(1)HexNAc(2)dHex(1);AC=152;", "Hex2HexNAc2": "NT=Hex(2)HexNAc(2);AC=153;", "Hex3HexNAc1Pent1": "NT=Hex(3)HexNAc(1)Pent(1);AC=154;", "Hex1HexNAc2dHex1Pent1": "NT=Hex(1)HexNAc(2)dHex(1)Pent(1);AC=155;", "Hex1HexNAc2dHex2": "NT=Hex(1)HexNAc(2)dHex(2);AC=156;", "Hex2HexNAc2Pent1": "NT=Hex(2)HexNAc(2)Pent(1);AC=157;", "Hex2HexNAc2dHex1": "NT=Hex(2)HexNAc(2)dHex(1);AC=158;", "M3/Man3": "NT=Hex(3)HexNAc(2);AC=159;", "Hex HexNAc NeuAc(2) ---OR--- Hex HexNAc(3) HexA": "NT=Hex(1)HexNAc(1)NeuAc(2);AC=160;", "Hex(3) HexNAc(2) Phos": "NT=Hex(3)HexNAc(2)Phos(1);AC=161;", "Selenium replaces sulfur": "NT=Delta:S(-1)Se(1);AC=162;", "glycosylated asparagine 18O labeling": "NT=Delta:H(-1)N(-1)18O(1);AC=170;", "Shimadzu NBS-13C": "NT=NBS:13C(6);AC=171;", "Shimadzu NBS-12C": "NT=NBS;AC=172;", "Michael addition of BHT quinone methide to Cysteine and Lysine": "NT=BHT;AC=176;", "phosphorylation to amine thiol": "NT=DAET;AC=178;", "13C(9) Silac label": "NT=Label:13C(9);AC=184;", "C13 label (Phosphotyrosine)": "NT=Label:13C(9)+Phospho;AC=185;", "Hydroxyphenylglyoxal arginine": "NT=HPG;AC=186;", "bis(hydroxphenylglyoxal) arginine": "NT=2HPG;AC=187;", "13C(6) Silac label": "NT=Label:13C(6);AC=188;", "O18 label at both C-terminal oxygens": "NT=Label:18O(2);AC=193;", "6-aminoquinolyl-N-hydroxysuccinimidyl carbamate": "NT=AccQTag;AC=194;", "APTA-d0": "NT=QAT;AC=195;", "APTA d3": "NT=QAT:2H(3);AC=196;", "EAPTA d0": "NT=EQAT;AC=197;", "EAPTA d5": "NT=EQAT:2H(5);AC=198;", "DiMethyl-CHD2": "NT=Dimethyl:2H(4);AC=199;", "EDT": "NT=Ethanedithiol;AC=200;", "Acrolein addition +94": "NT=Delta:H(6)C(6)O(1);AC=205;", "Acrolein addition +56": "NT=Delta:H(4)C(3)O(1);AC=206;", "Acrolein addition +38": "NT=Delta:H(2)C(3);AC=207;", "Acrolein addition +76": "NT=Delta:H(4)C(6);AC=208;", "Acrolein addition +112": "NT=Delta:H(8)C(6)O(2);AC=209;", "N-ethyl iodoacetamide-d0": "NT=NEIAA;AC=211;", "N-ethyl iodoacetamide-d5": "NT=NEIAA:2H(5);AC=212;", "ADP Ribose addition": "NT=ADP-Ribosyl;AC=213;", "Representative mass and accurate mass for 116 & 117": "NT=iTRAQ4plex;AC=214;", "Light IDBEST tag for quantitation": "NT=IGBP;AC=243;", "Acetaldehyde +26": "NT=Delta:H(2)C(2);AC=254;", "Acetaldehyde +28": "NT=Delta:H(4)C(2);AC=255;", "Propionaldehyde +40": "NT=Delta:H(4)C(3);AC=256;", "O18 Labeling": "NT=Label:18O(1);AC=258;", "13C(6) 15N(2) Silac label": "NT=Label:13C(6)15N(2);AC=259;", "Thiophosphorylation": "NT=Thiophospho;AC=260;", "4-sulfophenyl isothiocyanate": "NT=SPITC;AC=261;", "Trideuteration": "NT=Label:2H(3);AC=262;", "phosphorylation to pyridyl thiol": "NT=PET;AC=264;", "13C(6) 15N(4) Silac label": "NT=Label:13C(6)15N(4);AC=267;", "13C(5) 15N(1) Silac label": "NT=Label:13C(5)15N(1);AC=268;", "13C(9) 15N(1) Silac label": "NT=Label:13C(9)15N(1);AC=269;", "nucleophilic addtion to cytopiloyne": "NT=Cytopiloyne;AC=270;", "nucleophilic addition to cytopiloyne+H2O": "NT=Cytopiloyne+water;AC=271;", "sulfonation of N-terminus": "NT=CAF;AC=272;", "nitrosylation": "NT=Nitrosyl;AC=275;", "Aminoethylbenzenesulfonylation": "NT=AEBS;AC=276;", "Ethanolation": "NT=Ethanolyl;AC=278;", "Ethylation": "NT=Ethyl;AC=280;", "Cysteine modified Coenzyme A": "NT=CoenzymeA;AC=281;", "Deuterium Methylation of Lysine": "NT=Methyl:2H(2);AC=284;", "Light Sulfanilic Acid (SA) C12": "NT=SulfanilicAcid;AC=285;", "Heavy Sulfanilic Acid (SA) C13": "NT=SulfanilicAcid:13C(6);AC=286;", "Tryptophan oxidation to oxolactone": "NT=Trp->Oxolactone;AC=288;", "Biotin polyethyleneoxide amine": "NT=Biotin-PEO-Amine;AC=289;", "Pierce EZ-Link Biotin-HPDP": "NT=Biotin-HPDP;AC=290;", "Mercury Mercaptan": "NT=Delta:Hg(1);AC=291;", "(Iodo)-uracil MP": "NT=IodoU-AMP;AC=292;", "3-(carbamidomethylthio)propanoyl": "NT=CAMthiopropanoyl;AC=293;", "biotinoyl-iodoacetyl-ethylenediamine": "NT=IED-Biotin;AC=294;", "Fucose": "NT=dHex;AC=295;", "deuterated methyl ester": "NT=Methyl:2H(3);AC=298;", "Carboxylation": "NT=Carboxy;AC=299;", "Monobromobimane derivative": "NT=Bromobimane;AC=301;", "Menadione quinone derivative": "NT=Menadione;AC=302;", "Cysteine mercaptoethanol": "NT=DeStreak;AC=303;", "FA2/G0F": "NT=dHex(1)Hex(3)HexNAc(4);AC=305;", "FA2G1/G1F": "NT=dHex(1)Hex(4)HexNAc(4);AC=307;", "FA2G2/G2F": "NT=dHex(1)Hex(5)HexNAc(4);AC=308;", "A2/G0": "NT=Hex(3)HexNAc(4);AC=309;", "A2G1/G1": "NT=Hex(4)HexNAc(4);AC=310;", "A2G2/G2": "NT=Hex(5)HexNAc(4);AC=311;", "Cysteinylation": "NT=Cysteinyl;AC=312;", "Loss of Lysine": "NT=Lys-loss;AC=313;", "2,5-dimethypyrrole": "NT=DimethylpyrroleAdduct;AC=316;", "MDA adduct +62": "NT=Delta:H(2)C(5);AC=318;", "MDA adduct +54": "NT=Delta:H(2)C(3)O(1);AC=319;", "Nethylmaleimidehydrolysis": "NT=Nethylmaleimide+water;AC=320;", "bis-((N-iodoacetyl)piperazinyl)sulfonerhodamine": "NT=Xlink:B10621;AC=323;", "Cleaved and reduced DTBP crosslinker": "NT=Xlink:DTBP[87];AC=324;", "10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide": "NT=FP-Biotin;AC=325;", "S-Ethylcystine from Serine": "NT=Delta:H(4)C(2)O(-1)S(1);AC=327;", "monomethylation": "NT=Methyl:2H(3)13C(1);AC=329;", "dimethylation": "NT=Dimethyl:2H(6)13C(2);AC=330;", "thiophosphate labeled with biotin-HPDP": "NT=Thiophos-S-S-biotin;AC=332;", "6-N-biotinylaminohexyl isopropyl phosphate": "NT=Can-FP-biotin;AC=333;", "reduced 4-Hydroxynonenal": "NT=HNE+Delta:H(2);AC=335;", "Michael addition with methylamine": "NT=Methylamine;AC=337;", "bromination": "NT=Bromo;AC=340;", "Tyrosine oxidation to 2-aminotyrosine": "NT=Amino;AC=342;", "oxidized Arginine biotinylated with biotin hydrazide": "NT=Argbiotinhydrazide;AC=343;", "Arginine oxidation to glutamic semialdehyde": "NT=Arg->GluSA;AC=344;", "cysteine oxidation to cysteic acid": "NT=Trioxidation;AC=345;", "His->Asn substitution": "NT=His->Asn;AC=348;", "His->Asp substitution": "NT=His->Asp;AC=349;", "tryptophan oxidation to hydroxykynurenin": "NT=Trp->Hydroxykynurenin;AC=350;", "tryptophan oxidation to kynurenin": "NT=Trp->Kynurenin;AC=351;", "Lysine oxidation to aminoadipic semialdehyde": "NT=Lys->Allysine;AC=352;", "oxidized Lysine biotinylated with biotin hydrazide": "NT=Lysbiotinhydrazide;AC=353;", "Oxidation to nitro": "NT=Nitro;AC=354;", "oxidized proline biotinylated with biotin hydrazide": "NT=probiotinhydrazide;AC=357;", "proline oxidation to pyroglutamic acid": "NT=Pro->pyro-Glu;AC=359;", "Proline oxidation to pyrrolidinone": "NT=Pro->Pyrrolidinone;AC=360;", "oxidized Threonine biotinylated with biotin hydrazide": "NT=Thrbiotinhydrazide;AC=361;", "O-Diisopropylphosphorylation": "NT=Diisopropylphosphate;AC=362;", "O-Isopropylphosphorylation": "NT=Isopropylphospho;AC=363;", "Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form": "NT=ICPL:13C(6);AC=364;", "Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form": "NT=ICPL;AC=365;", "Deamidation in presence of O18": "NT=Deamidated:18O(1);AC=366;", "Dehydroalanine (from Cysteine)": "NT=Cys->Dha;AC=368;", "Pyrrolidone from Proline": "NT=Pro->Pyrrolidone;AC=369;", "Michael addition of hydroxymethylvinyl ketone to cysteine": "NT=HMVK;AC=371;", "Ornithine from Arginine": "NT=Arg->Orn;AC=372;", "Half of a disulfide bridge": "NT=Dehydro;AC=374;", "hydroxyfarnesyl": "NT=Hydroxyfarnesyl;AC=376;", "diacylglycerol": "NT=Diacylglycerol;AC=377;", "carboxyethyl": "NT=Carboxyethyl;AC=378;", "hypusine": "NT=Hypusine;AC=379;", "retinal": "NT=Retinylidene;AC=380;", "alpha-amino adipic acid": "NT=Lys->AminoadipicAcid;AC=381;", "pyruvic acid from N-term cys": "NT=Cys->PyruvicAcid;AC=382;", "Loss of ammonia": "NT=Ammonia-loss;AC=385;", "phycocyanobilin": "NT=Phycocyanobilin;AC=387;", "phycoerythrobilin": "NT=Phycoerythrobilin;AC=388;", "phytochromobilin": "NT=Phytochromobilin;AC=389;", "heme": "NT=Heme;AC=390;", "molybdopterin": "NT=Molybdopterin;AC=391;", "quinone": "NT=Quinone;AC=392;", "glucosylgalactosyl hydroxylysine": "NT=Glucosylgalactosyl;AC=393;", "glycosylphosphatidylinositol": "NT=GPIanchor;AC=394;", "phosphoribosyl dephospho-coenzyme A": "NT=PhosphoribosyldephosphoCoA;AC=395;", "glycerylphosphorylethanolamine": "NT=GlycerylPE;AC=396;", "triiodo": "NT=Triiodothyronine;AC=397;", "tetraiodo": "NT=Thyroxine;AC=398;", "Dehydroalanine (from Tyrosine)": "NT=Tyr->Dha;AC=400;", "2-amino-3-oxo-butanoic_acid": "NT=Didehydro;AC=401;", "oxoalanine": "NT=Cys->Oxoalanine;AC=402;", "lactic acid from N-term Ser": "NT=Ser->LacticAcid;AC=403;", "AMP": "NT=Phosphoadenosine;AC=405;", "hydroxycinnamyl": "NT=Hydroxycinnamyl;AC=407;", "glycosyl-L-hydroxyproline": "NT=Glycosyl;AC=408;", "flavin mononucleotide": "NT=FMNH;AC=409;", "S-diphytanylglycerol diether": "NT=Archaeol;AC=410;", "phenyl isocyanate": "NT=Phenylisocyanate;AC=411;", "d5-phenyl isocyanate": "NT=Phenylisocyanate:2H(5);AC=412;", "phospho-guanosine": "NT=Phosphoguanosine;AC=413;", "hydroxymethyl": "NT=Hydroxymethyl;AC=414;", "L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide)": "NT=MolybdopterinGD+Delta:S(-1)Se(1);AC=415;", "dipyrrolylmethanemethyl": "NT=Dipyrrolylmethanemethyl;AC=416;", "uridine phosphodiester": "NT=PhosphoUridine;AC=417;", "glycerophospho": "NT=Glycerophospho;AC=419;", "thiocarboxylic acid": "NT=Carboxy->Thiocarboxy;AC=420;", "persulfide": "NT=Sulfide;AC=421;", "N-pyruvic acid 2-iminyl": "NT=PyruvicAcidIminyl;AC=422;", "selenyl": "NT=Delta:Se(1);AC=423;", "molybdenum bis(molybdopterin guanine dinucleotide)": "NT=MolybdopterinGD;AC=424;", "dihydroxy": "NT=Dioxidation;AC=425;", "octanoyl": "NT=Octanoyl;AC=426;", "N-acetylglucosamine-1-phosphoryl": "NT=PhosphoHexNAc;AC=428;", "phosphoglycosyl-D-mannose-1-phosphoryl": "NT=PhosphoHex;AC=429;", "palmitoleyl": "NT=Palmitoleyl;AC=431;", "cholesterol ester": "NT=Cholesterol;AC=432;", "3,4-didehydroretinylidene": "NT=Didehydroretinylidene;AC=433;", "cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester": "NT=CHDH;AC=434;", "4-methyl-delta-1-pyrroline-5-carboxyl": "NT=Methylpyrroline;AC=435;", "hydroxyheme": "NT=Hydroxyheme;AC=436;", "(3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine": "NT=MicrocinC7;AC=437;", "cyano": "NT=Cyano;AC=438;", "hydrogenase diiron subcluster": "NT=Diironsubcluster;AC=439;", "amidino": "NT=Amidino;AC=440;", "O3-(riboflavin phosphoryl)": "NT=FMN;AC=442;", "S-(4a-FMN)": "NT=FMNC;AC=443;", "copper sulfido molybdopterin cytosine dinuncleotide": "NT=CuSMo;AC=444;", "5-hydroxy-N6,N6,N6-trimethyl": "NT=Hydroxytrimethyl;AC=445;", "reduction": "NT=Deoxy;AC=447;", "microcin E492 siderophore ester from serine": "NT=Microcin;AC=448;", "lipid": "NT=Decanoyl;AC=449;", "monoglutamyl": "NT=Glu;AC=450;", "diglutamyl": "NT=GluGlu;AC=451;", "triglutamyl": "NT=GluGluGlu;AC=452;", "tetraglutamyl": "NT=GluGluGluGlu;AC=453;", "Hexosamine": "NT=HexN;AC=454;", "Free monolink of DMP crosslinker": "NT=Xlink:DMP[154];AC=455;", "Dimethyl pimelimidate crosslink": "NT=Xlink:DMP;AC=456;", "naphthalene-2,3-dicarboxaldehyde": "NT=NDA;AC=457;", "4-sulfophenyl isothiocyanate (Heavy C13)": "NT=SPITC:13C(6);AC=464;", "aminoethylcysteine": "NT=AEC-MAEC;AC=472;", "4-trimethyllammoniumbutyryl-": "NT=TMAB;AC=476;", "d9-4-trimethyllammoniumbutyryl-": "NT=TMAB:2H(9);AC=477;", "fluorescein-5-thiosemicarbazide": "NT=FTC;AC=478;", "4,4,5,5-D4 Lysine": "NT=Label:2H(4);AC=481;", "Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines": "NT=DHP;AC=488;", "Heptose": "NT=Hep;AC=490;", "Bisphenol A diglycidyl ether derivative": "NT=BADGE;AC=493;", "Cy3 CyDye DIGE Fluor saturation dye": "NT=CyDye-Cy3;AC=494;", "Cy5 CyDye DIGE Fluor saturation dye": "NT=CyDye-Cy5;AC=495;", "Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K": "NT=BHTOH;AC=498;", "Heavy IDBEST tag for quantitation": "NT=IGBP:13C(2);AC=499;", "Nmethylmaleimidehydrolysis": "NT=Nmethylmaleimide+water;AC=500;", "3-methyl-2-pyridyl isocyanate": "NT=PyMIC;AC=501;", "Levuglandinyl - lysine lactam adduct": "NT=LG-lactam-K;AC=503;", "Levuglandinyl - lysine hydroxylactam adduct": "NT=LG-Hlactam-K;AC=504;", "Levuglandinyl - arginine lactam adduct": "NT=LG-lactam-R;AC=505;", "Levuglandinyl - arginine hydroxylactam adduct": "NT=LG-Hlactam-R;AC=506;", "DiMethyl-C13HD2": "NT=Dimethyl:2H(4)13C(2);AC=510;", "Lactosylation": "NT=Hex(2);AC=512;", "[3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium": "NT=C8-QAT;AC=513;", "propyl-1,2-dideoxy-2\\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\\'-thiazoline": "NT=PropylNAGthiazoline;AC=514;", "fluorescein-5-maleimide": "NT=FNEM;AC=515;", "Diethylation, analogous to Dimethylation": "NT=Diethyl;AC=518;", "4,4\\'-dianilino-1,1\\'-binaphthyl-5,5\\'-disulfonic acid": "NT=BisANS;AC=519;", "Piperidination": "NT=Piperidine;AC=520;", "Maleimide-Biotin": "NT=Maleimide-PEO2-Biotin;AC=522;", "Biot_LC_LC": "NT=Sulfo-NHS-LC-LC-Biotin;AC=523;", "Prompt loss of side chain from oxidised Met": "NT=Dethiomethyl;AC=526;", "Deamidation followed by a methylation": "NT=Methyl+Deamidated;AC=528;", "Dimethylation of proline residue": "NT=Delta:H(5)C(2);AC=529;", "Replacement of proton by potassium": "NT=Cation:K;AC=530;", "Replacement of proton by copper": "NT=Cation:Cu[I];AC=531;", "Accurate mass for 114": "NT=iTRAQ4plex114;AC=532;", "Accurate mass for 115": "NT=iTRAQ4plex115;AC=533;", "Ubiquitination": "NT=LRGG;AC=535;", "was 15dB-biotin": "NT=Biotin:Cayman-10141;AC=538;", "was PGA1-biotin": "NT=Biotin:Cayman-10013;AC=539;", "Ala->Ser substitution": "NT=Ala->Ser;AC=540;", "Ala->Thr substitution": "NT=Ala->Thr;AC=541;", "Ala->Asp substitution": "NT=Ala->Asp;AC=542;", "Ala->Pro substitution": "NT=Ala->Pro;AC=543;", "Ala->Gly substitution": "NT=Ala->Gly;AC=544;", "Ala->Glu substitution": "NT=Ala->Glu;AC=545;", "Ala->Val substitution": "NT=Ala->Val;AC=546;", "Cys->Phe substitution": "NT=Cys->Phe;AC=547;", "Cys->Ser substitution": "NT=Cys->Ser;AC=548;", "Cys->Trp substitution": "NT=Cys->Trp;AC=549;", "Cys->Tyr substitution": "NT=Cys->Tyr;AC=550;", "Cys->Arg substitution": "NT=Cys->Arg;AC=551;", "Cys->Gly substitution": "NT=Cys->Gly;AC=552;", "Asp->Ala substitution": "NT=Asp->Ala;AC=553;", "Asp->His substitution": "NT=Asp->His;AC=554;", "Asp->Asn substitution": "NT=Asp->Asn;AC=555;", "Asp->Gly substitution": "NT=Asp->Gly;AC=556;", "Asp->Tyr substitution": "NT=Asp->Tyr;AC=557;", "Asp->Glu substitution": "NT=Asp->Glu;AC=558;", "Asp->Val substitution": "NT=Asp->Val;AC=559;", "Glu->Ala substitution": "NT=Glu->Ala;AC=560;", "Glu->Gln substitution": "NT=Glu->Gln;AC=561;", "Glu->Asp substitution": "NT=Glu->Asp;AC=562;", "Glu->Lys substitution": "NT=Glu->Lys;AC=563;", "Glu->Gly substitution": "NT=Glu->Gly;AC=564;", "Glu->Val substitution": "NT=Glu->Val;AC=565;", "Phe->Ser substitution": "NT=Phe->Ser;AC=566;", "Phe->Cys substitution": "NT=Phe->Cys;AC=567;", "Phe->Leu/Ile substitution": "NT=Phe->Xle;AC=568;", "Phe->Tyr substitution": "NT=Phe->Tyr;AC=569;", "Phe->Val substitution": "NT=Phe->Val;AC=570;", "Gly->Ala substitution": "NT=Gly->Ala;AC=571;", "Gly->Ser substitution": "NT=Gly->Ser;AC=572;", "Gly->Trp substitution": "NT=Gly->Trp;AC=573;", "Gly->Glu substitution": "NT=Gly->Glu;AC=574;", "Gly->Val substitution": "NT=Gly->Val;AC=575;", "Gly->Asp substitution": "NT=Gly->Asp;AC=576;", "Gly->Cys substitution": "NT=Gly->Cys;AC=577;", "Gly->Arg substitution": "NT=Gly->Arg;AC=578;", "His->Pro substitution": "NT=His->Pro;AC=580;", "His->Tyr substitution": "NT=His->Tyr;AC=581;", "His->Gln substitution": "NT=His->Gln;AC=582;", "His->Arg substitution": "NT=His->Arg;AC=584;", "His->Leu/Ile substitution": "NT=His->Xle;AC=585;", "Leu/Ile->Thr substitution": "NT=Xle->Thr;AC=588;", "Leu/Ile->Asn substitution": "NT=Xle->Asn;AC=589;", "Leu/Ile->Lys substitution": "NT=Xle->Lys;AC=590;", "Lys->Thr substitution": "NT=Lys->Thr;AC=594;", "Lys->Asn substitution": "NT=Lys->Asn;AC=595;", "Lys->Glu substitution": "NT=Lys->Glu;AC=596;", "Lys->Gln substitution": "NT=Lys->Gln;AC=597;", "Lys->Met substitution": "NT=Lys->Met;AC=598;", "Lys->Arg substitution": "NT=Lys->Arg;AC=599;", "Lys->Leu/Ile substitution": "NT=Lys->Xle;AC=600;", "Leu/Ile->Ser substitution": "NT=Xle->Ser;AC=601;", "Leu/Ile->Phe substitution": "NT=Xle->Phe;AC=602;", "Leu/Ile->Trp substitution": "NT=Xle->Trp;AC=603;", "Leu/Ile->Pro substitution": "NT=Xle->Pro;AC=604;", "Leu/Ile->Val substitution": "NT=Xle->Val;AC=605;", "Leu/Ile->His substitution": "NT=Xle->His;AC=606;", "Leu/Ile->Gln substitution": "NT=Xle->Gln;AC=607;", "Leu/Ile->Met substitution": "NT=Xle->Met;AC=608;", "Leu/Ile->Arg substitution": "NT=Xle->Arg;AC=609;", "Met->Thr substitution": "NT=Met->Thr;AC=610;", "Met->Arg substitution": "NT=Met->Arg;AC=611;", "Met->Lys substitution": "NT=Met->Lys;AC=613;", "Met->Leu/Ile substitution": "NT=Met->Xle;AC=614;", "Met->Val substitution": "NT=Met->Val;AC=615;", "Asn->Ser substitution": "NT=Asn->Ser;AC=616;", "Asn->Thr substitution": "NT=Asn->Thr;AC=617;", "Asn->Lys substitution": "NT=Asn->Lys;AC=618;", "Asn->Tyr substitution": "NT=Asn->Tyr;AC=619;", "Asn->His substitution": "NT=Asn->His;AC=620;", "Asn->Asp substitution": "NT=Asn->Asp;AC=621;", "Asn->Leu/Ile substitution": "NT=Asn->Xle;AC=622;", "Pro->Ser substitution": "NT=Pro->Ser;AC=623;", "Pro->Ala substitution": "NT=Pro->Ala;AC=624;", "Pro->His substitution": "NT=Pro->His;AC=625;", "Pro->Gln substitution": "NT=Pro->Gln;AC=626;", "Pro->Thr substitution": "NT=Pro->Thr;AC=627;", "Pro->Arg substitution": "NT=Pro->Arg;AC=628;", "Pro->Leu/Ile substitution": "NT=Pro->Xle;AC=629;", "Gln->Pro substitution": "NT=Gln->Pro;AC=630;", "Gln->Lys substitution": "NT=Gln->Lys;AC=631;", "Gln->Glu substitution": "NT=Gln->Glu;AC=632;", "Gln->His substitution": "NT=Gln->His;AC=633;", "Gln->Arg substitution": "NT=Gln->Arg;AC=634;", "Gln->Leu/Ile substitution": "NT=Gln->Xle;AC=635;", "Arg->Ser substitution": "NT=Arg->Ser;AC=636;", "Arg->Trp substitution": "NT=Arg->Trp;AC=637;", "Arg->Thr substitution": "NT=Arg->Thr;AC=638;", "Arg->Pro substitution": "NT=Arg->Pro;AC=639;", "Arg->Lys substitution": "NT=Arg->Lys;AC=640;", "Arg->His substitution": "NT=Arg->His;AC=641;", "Arg->Gln substitution": "NT=Arg->Gln;AC=642;", "Arg->Met substitution": "NT=Arg->Met;AC=643;", "Arg->Cys substitution": "NT=Arg->Cys;AC=644;", "Arg->Leu/Ile substitution": "NT=Arg->Xle;AC=645;", "Arg->Gly substitution": "NT=Arg->Gly;AC=646;", "Ser->Phe substitution": "NT=Ser->Phe;AC=647;", "Ser->Ala substitution": "NT=Ser->Ala;AC=648;", "Ser->Trp substitution": "NT=Ser->Trp;AC=649;", "Ser->Thr substitution": "NT=Ser->Thr;AC=650;", "Ser->Asn substitution": "NT=Ser->Asn;AC=651;", "Ser->Pro substitution": "NT=Ser->Pro;AC=652;", "Ser->Tyr substitution": "NT=Ser->Tyr;AC=653;", "Ser->Cys substitution": "NT=Ser->Cys;AC=654;", "Ser->Arg substitution": "NT=Ser->Arg;AC=655;", "Ser->Leu/Ile substitution": "NT=Ser->Xle;AC=656;", "Ser->Gly substitution": "NT=Ser->Gly;AC=657;", "Thr->Ser substitution": "NT=Thr->Ser;AC=658;", "Thr->Ala substitution": "NT=Thr->Ala;AC=659;", "Thr->Asn substitution": "NT=Thr->Asn;AC=660;", "Thr->Lys substitution": "NT=Thr->Lys;AC=661;", "Thr->Pro substitution": "NT=Thr->Pro;AC=662;", "Thr->Met substitution": "NT=Thr->Met;AC=663;", "Thr->Leu/Ile substitution": "NT=Thr->Xle;AC=664;", "Thr->Arg substitution": "NT=Thr->Arg;AC=665;", "Val->Phe substitution": "NT=Val->Phe;AC=666;", "Val->Ala substitution": "NT=Val->Ala;AC=667;", "Val->Glu substitution": "NT=Val->Glu;AC=668;", "Val->Met substitution": "NT=Val->Met;AC=669;", "Val->Asp substitution": "NT=Val->Asp;AC=670;", "Val->Leu/Ile substitution": "NT=Val->Xle;AC=671;", "Val->Gly substitution": "NT=Val->Gly;AC=672;", "Trp->Ser substitution": "NT=Trp->Ser;AC=673;", "Trp->Cys substitution": "NT=Trp->Cys;AC=674;", "Trp->Arg substitution": "NT=Trp->Arg;AC=675;", "Trp->Gly substitution": "NT=Trp->Gly;AC=676;", "Trp->Leu/Ile substitution": "NT=Trp->Xle;AC=677;", "Tyr->Phe substitution": "NT=Tyr->Phe;AC=678;", "Tyr->Ser substitution": "NT=Tyr->Ser;AC=679;", "Tyr->Asn substitution": "NT=Tyr->Asn;AC=680;", "Tyr->His substitution": "NT=Tyr->His;AC=681;", "Tyr->Asp substitution": "NT=Tyr->Asp;AC=682;", "Tyr->Cys substitution": "NT=Tyr->Cys;AC=683;", "Mass Defect Tag on lysine e-amino": "NT=BDMAPP;AC=684;", "Nitroalkylation by Nitro Linoleic Acid": "NT=NA-LNO2;AC=685;", "Nitroalkylation by Nitro Oleic Acid": "NT=NA-OA-NO2;AC=686;", "Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form": "NT=ICPL:2H(4);AC=687;", "13C(6) 15N(1) Silac label": "NT=Label:13C(6)15N(1);AC=695;", "13C(6) 15N(2) (D)9 SILAC label": "NT=Label:2H(9)13C(6)15N(2);AC=696;", "Nicotinic Acid": "NT=NIC;AC=697;", "deuterated Nicotinic Acid": "NT=dNIC;AC=698;", "Dehydrated 4-hydroxynonenal": "NT=HNE-Delta:H(2)O;AC=720;", "4-Oxononenal (ONE)": "NT=4-ONE;AC=721;", "O-Dimethylphosphorylation": "NT=O-Dimethylphosphate;AC=723;", "O-Methylphosphorylation": "NT=O-Methylphosphate;AC=724;", "O-Diethylphosphorylation": "NT=Diethylphosphate;AC=725;", "O-Ethylphosphorylation": "NT=Ethylphosphate;AC=726;", "O-pinacolylmethylphosphonylation": "NT=O-pinacolylmethylphosphonate;AC=727;", "Methylphosphonylation": "NT=Methylphosphonate;AC=728;", "O-Isopropylmethylphosphonylation": "NT=O-Isopropylmethylphosphonate;AC=729;", "Representative mass and accurate mass for 113, 114, 116 & 117": "NT=iTRAQ8plex;AC=730;", "Accurate mass for 115, 118, 119 & 121": "NT=iTRAQ8plex:13C(6)15N(2);AC=731;", "Carboxyl modification with ethanolamine": "NT=Ethanolamine;AC=734;", "Beta elimination of modified S or T followed by Michael addition of DTT": "NT=BEMAD_ST;AC=735;", "Beta elimination of alkylated Cys followed by Michael addition of DTT": "NT=BEMAD_C;AC=736;", "Sixplex Tandem Mass Tag\u00ae": "NT=TMT6plex;AC=737;", "Duplex Tandem Mass Tag\u00ae": "NT=TMT2plex;AC=738;", "Native Tandem Mass Tag\u00ae": "NT=TMT;AC=739;", "ExacTag Thiol label mass for 2-4-7-10 plex": "NT=ExacTagThiol;AC=740;", "ExacTag Amine label mass for 2-4-7-10 plex": "NT=ExacTagAmine;AC=741;", "Dehydrated 4-Oxononenal Michael adduct": "NT=4-ONE+Delta:H(-2)O(-1);AC=743;", "Nitroso Sulfamethoxazole Sulphenamide thiol adduct": "NT=NO_SMX_SEMD;AC=744;", "Nitroso Sulfamethoxazole Sulfinamide thiol adduct": "NT=NO_SMX_SIMD;AC=746;", "Malonylation": "NT=Malonyl;AC=747;", "derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester": "NT=3sulfo;AC=748;", "trifluoroleucine replacement of leucine": "NT=trifluoro;AC=750;", "tri nitro benzene": "NT=TNBS;AC=751;", "Isotope Distribution Encoded Tag": "NT=IDEnT;AC=762;", "Beta elimination of modified S or T followed by Michael addition of labelled DTT": "NT=BEMAD_ST:2H(6);AC=763;", "Beta elimination of alkylated Cys followed by Michael addition of labelled DTT": "NT=BEMAD_C:2H(6);AC=764;", "Removal of initiator methionine from protein N-terminus": "NT=Met-loss;AC=765;", "Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus": "NT=Met-loss+Acetyl;AC=766;", "Menadione hydroquinone derivative": "NT=Menadione-HQ;AC=767;", "Mono-methylated lysine labelled with Acetyl_heavy": "NT=Methyl+Acetyl:2H(3);AC=768;", "lapachenole photochemically added to cysteine": "NT=lapachenole;AC=771;", "13C(5) Silac label": "NT=Label:13C(5);AC=772;", "Alkylation by biotinylated form of phenacyl bromide": "NT=Biotin-phenacyl;AC=774;", "Iodoacetic acid derivative w/ 13C label": "NT=Carboxymethyl:13C(2);AC=775;", "D5 N-ethylmaleimide on cysteines": "NT=NEM:2H(5);AC=776;", "deuterium cysteamine modification to S or T": "NT=AEC-MAEC:2H(4);AC=792;", "Hex1HexNAc1": "NT=Hex(1)HexNAc(1);AC=793;", "13C6 labeled ubiquitinylation residue": "NT=Label:13C(6)+GG;AC=799;", "was PentylamineBiotin": "NT=Biotin:Thermo-21345;AC=800;", "Labeling transglutaminase substrate on glutamine side chain": "NT=Pentylamine;AC=801;", "was Biotin-PEO4-hydrazide": "NT=Biotin:Thermo-21360;AC=811;", "fluorescent dye that labels cysteines": "NT=Cy3b-maleimide;AC=821;", "Enzymatic glycine removal leaving an amidated C-terminus": "NT=Gly-loss+Amide;AC=822;", "Intact or monolink BMOE crosslinker": "NT=Xlink:BMOE;AC=824;", "Intact DFDNB crosslinker": "NT=Xlink:DFDNB;AC=825;", "tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative": "NT=TMPP-Ac;AC=827;", "Dihydroxy methylglyoxal adduct": "NT=Dihydroxyimidazolidine;AC=830;", "Acetyl 4,4,5,5-D4 Lysine": "NT=Label:2H(4)+Acetyl;AC=834;", "Acetyl 13C(6) Silac label": "NT=Label:13C(6)+Acetyl;AC=835;", "Acetyl_13C(6) 15N(2) Silac label": "NT=Label:13C(6)15N(2)+Acetyl;AC=836;", "Arginine replacement by Nitropyrimidyl ornithine": "NT=Arg->Npo;AC=837;", "Sumo mutant Smt3-WT tail following trypsin digestion": "NT=EQIGG;AC=846;", "Adduct of phenylglyoxal with Arg": "NT=Arg2PG;AC=848;", "S-guanylation": "NT=cGMP;AC=849;", "S-guanylation-2": "NT=cGMP+RMP-loss;AC=851;", "Ubiquitination 2H4 lysine": "NT=Label:2H(4)+GG;AC=853;", "Methylglyoxal-derived hydroimidazolone": "NT=MG-H1;AC=859;", "Glyoxal-derived hydroimiadazolone": "NT=G-H1;AC=860;", "NHS ester linked Green Fluorescent Bodipy Dye": "NT=ZGB;AC=861;", "SILAC": "NT=Label:13C(1)2H(3);AC=862;", "13C(6) 15N(2) Lysine glygly": "NT=Label:13C(6)15N(2)+GG;AC=864;", "Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form": "NT=ICPL:13C(6)2H(4);AC=866;", "SUMOylation by SUMO-1": "NT=QEQTGG;AC=876;", "SUMOylation by SUMO-2/3": "NT=QQQTGG;AC=877;", "was ChromoBiotin": "NT=Biotin:Thermo-21325;AC=884;", "Oxidised methionine 13C(1)2H(3) SILAC label": "NT=Label:13C(1)2H(3)+Oxidation;AC=885;", "2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate": "NT=HydroxymethylOP;AC=886;", "covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253)": "NT=MDCC;AC=887;", "mTRAQ light": "NT=mTRAQ;AC=888;", "mTRAQ medium": "NT=mTRAQ:13C(3)15N(1);AC=889;", "Thiol-reactive dye for fluorescence labelling of proteins": "NT=DyLight-maleimide;AC=890;", "Carbamidomethylated DTT modification of cysteine": "NT=CarbamidomethylDTT;AC=893;", "Carboxymethylated DTT modification of cysteine": "NT=CarboxymethylDTT;AC=894;", "Biotin polyethyleneoxide (n=3) alkyne": "NT=Biotin-PEG-PRA;AC=895;", "Methionine replacement by azido homoalanine": "NT=Met->Aha;AC=896;", "SILAC 15N(4)": "NT=Label:15N(4);AC=897;", "pyrophosphorylation of Ser/Thr": "NT=pyrophospho;AC=898;", "methionine replacement by homopropargylglycine": "NT=Met->Hpg;AC=899;", "2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine": "NT=4AcAllylGal;AC=901;", "Reaction with dimethylarsinous (AsIII) acid": "NT=DimethylArsino;AC=902;", "Lys->Cys substitution and carbamidomethylation": "NT=Lys->CamCys;AC=903;", "Phe->Cys substitution and carbamidomethylation": "NT=Phe->CamCys;AC=904;", "Leu->Met substitution and sulfoxidation": "NT=Leu->MetOx;AC=905;", "Lys->Met substitution and sulfoxidation": "NT=Lys->MetOx;AC=906;", "Gluconoylation": "NT=Galactosyl;AC=907;", "Monolink of SMCC terminated with 3-(dimethylamino)-1-propylamine": "NT=Xlink:SMCC[321];AC=908;", "2,4-diacetamido-2,4,6-trideoxyglucopyranose": "NT=Bacillosamine;AC=910;", "Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL)": "NT=MTSL;AC=911;", "4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced": "NT=HNE-BAHAH;AC=912;", "Methylmalonylation on Serine": "NT=Methylmalonylation;AC=914;", "13C(4) 15N(2) Lysine glygly": "NT=Label:13C(4)15N(2)+GG;AC=923;", "ethyl amino": "NT=ethylamino;AC=926;", "2-OH-ethyl thio-Ser": "NT=MercaptoEthanol;AC=928;", "deamidation followed by esterification with ethanol": "NT=Ethyl+Deamidated;AC=931;", "SUMOylation by SUMO-2/3 (formic acid cleavage)": "NT=VFQQQTGG;AC=932;", "SUMOylation by SUMO-1 (formic acid cleavage)": "NT=VIEVYQEQTGG;AC=933;", "Photocleavable Biotin + GalNAz on O-GlcNAc": "NT=AMTzHexNAc2;AC=934;", "High molecular absorption maleimide label for proteins": "NT=Atto495Maleimide;AC=935;", "Chlorination of tyrosine residues": "NT=Chlorination;AC=936;", "Dichlorination": "NT=dichlorination;AC=937;", "Cysteine modifier": "NT=AROD;AC=938;", "carbamidomethylated Cys that undergoes beta-elimination and Michael addition of methylamine": "NT=Cys->methylaminoAla;AC=939;", "Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ethylamine": "NT=Cys->ethylaminoAla;AC=940;", "2,4-Dinitrobenzenesulfenyl": "NT=DNPS;AC=941;", "High molecular absorption label for proteins": "NT=SulfoGMBS;AC=942;", "Modified GMBS X linker": "NT=DimethylamineGMBS;AC=943;", "SILAC label": "NT=Label:15N(2)2H(9);AC=944;", "Levuglandinyl-lysine anhydrolactam adduct": "NT=LG-anhydrolactam;AC=946;", "Levuglandinyl-lysine pyrrole adduct": "NT=LG-pyrrole;AC=947;", "Levuglandinyl-lysine anhyropyrrole adduct": "NT=LG-anhyropyrrole;AC=948;", "Condensation product of 3-deoxyglucosone": "NT=3-deoxyglucosone;AC=949;", "Replacement of proton by lithium": "NT=Cation:Li;AC=950;", "Replacement of 2 protons by calcium": "NT=Cation:Ca[II];AC=951;", "Replacement of 2 protons by iron": "NT=Cation:Fe[II];AC=952;", "Replacement of 2 protons by nickel": "NT=Cation:Ni[II];AC=953;", "Replacement of 2 protons by zinc": "NT=Cation:Zn[II];AC=954;", "Replacement of proton by silver": "NT=Cation:Ag;AC=955;", "Replacement of 2 protons by magnesium": "NT=Cation:Mg[II];AC=956;", "S-(2-succinyl) cysteine": "NT=2-succinyl;AC=957;", "propargylamine": "NT=Propargylamine;AC=958;", "phospho-propargylamine": "NT=Phosphopropargyl;AC=959;", "SUMOylation by SUMO-1 after tryptic cleavage": "NT=SUMO2135;AC=960;", "SUMOylation by SUMO-2/3 after tryptic cleavage": "NT=SUMO3549;AC=961;", "membrane protein extraction": "NT=thioacylPA;AC=967;", "maleimide-3-saccharide": "NT=maleimide3;AC=971;", "maleimide-5-saccharide": "NT=maleimide5;AC=972;", "2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate": "NT=Carbofuran;AC=977;", "Benzyl isothiocyanate": "NT=BITC;AC=978;", "Phenethyl isothiocyanate": "NT=PEITC;AC=979;", "Condensation product of glucosone": "NT=glucosone;AC=981;", "Native cysteine-reactive Tandem Mass Tag\u00ae": "NT=cysTMT;AC=984;", "cysteine-reactive Sixplex Tandem Mass Tag\u00ae": "NT=cysTMT6plex;AC=985;", "Dimethyl 13C(6) Silac label": "NT=Label:13C(6)+Dimethyl;AC=986;", "Dimethyl 13C(6)15N(2) Silac label": "NT=Label:13C(6)15N(2)+Dimethyl;AC=987;", "replacement of proton with ammonium ion": "NT=Ammonium;AC=989;", "ISD (z+2)-series": "NT=ISD_z+2_ion;AC=991;", "was Biotin-maleimide": "NT=Biotin:Sigma-B1267;AC=993;", "15N(1)": "NT=Label:15N(1);AC=994;", "15N(2)": "NT=Label:15N(2);AC=995;", "15N(3)": "NT=Label:15N(3);AC=996;", "aminotyrosine with sulfation": "NT=sulfo+amino;AC=997;", "Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne)": "NT=AHA-Alkyne;AC=1000;", "Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne)": "NT=AHA-Alkyne-KDDDD;AC=1001;", "(-)-epigallocatechin-3-gallate": "NT=EGCG1;AC=1002;", "(-)-dehydroepigallocatechin": "NT=EGCG2;AC=1003;", "Monomethylated Arg13C(6) 15N(4)": "NT=Label:13C(6)15N(4)+Methyl;AC=1004;", "Dimethylated Arg13C(6) 15N(4)": "NT=Label:13C(6)15N(4)+Dimethyl;AC=1005;", "2H(3) 13C(1) monomethylated Arg13C(6) 15N(4)": "NT=Label:13C(6)15N(4)+Methyl:2H(3)13C(1);AC=1006;", "2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4)": "NT=Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2);AC=1007;", "Sec Iodoacetamide derivative": "NT=Cys->CamSec;AC=1008;", "formaldehyde adduct": "NT=Thiazolidine;AC=1009;", "Addition of DEDGFLYMVYASQETFG": "NT=DEDGFLYMVYASQETFG;AC=1010;", "Nalpha-(3-maleimidylpropionyl)biocytin": "NT=Biotin:Invitrogen-M1602;AC=1012;", "glycidamide adduct": "NT=glycidamide;AC=1014;", "C-terminal homoserine lactone and two aminohexanoic acids": "NT=Ahx2+Hsl;AC=1015;", "DMPO spin-trap nitrone adduct": "NT=DMPO;AC=1017;", "Isotope-Coded Dimedone light form": "NT=ICDID;AC=1018;", "Isotope-Coded Dimedone heavy form": "NT=ICDID:2H(6);AC=1019;", "Water-quenched monolink of DSS/BS3 crosslinker": "NT=Xlink:DSS[156];AC=1020;", "Water quenched monolink of EGS cross-linker": "NT=Xlink:EGS[244];AC=1021;", "Water quenched monolink of DST crosslinker": "NT=Xlink:DST[132];AC=1022;", "Water quenched monolink of DSP/DTSSP crosslinker": "NT=Xlink:DTSSP[192];AC=1023;", "Water quenched monolink of SMCC": "NT=Xlink:SMCC[237];AC=1024;", "Water quenched monolink of DMP crosslinker": "NT=Xlink:DMP[140];AC=1027;", "Cleavage product of EGS protein crosslinks by hydroylamine treatment": "NT=Xlink:EGS[115];AC=1028;", "desthiobiotin modification of lysine": "NT=Biotin:Thermo-88310;AC=1031;", "Tyrosine caged with 2-nitrobenzyl (ONB)": "NT=2-nitrobenzyl;AC=1032;", "N-ethylmaleimide on selenocysteines": "NT=Cys->SecNEM;AC=1033;", "D5 N-ethylmaleimide on selenocysteines": "NT=Cys->SecNEM:2H(5);AC=1034;", "Thiadiazolydation of Cys": "NT=Thiadiazole;AC=1035;", "Modification of cystein by withaferin": "NT=Withaferin;AC=1036;", "desthiobiotin fluorophosphonate": "NT=Biotin:Thermo-88317;AC=1037;", "TAMRA fluorophosphonate modification of serine": "NT=TAMRA-FP;AC=1038;", "Maleimide-Biotin + Water": "NT=Biotin:Thermo-21901+H2O;AC=1039;", "Ala->Cys substitution": "NT=Ala->Cys;AC=1044;", "Ala->Phe substitution": "NT=Ala->Phe;AC=1045;", "Ala->His substitution": "NT=Ala->His;AC=1046;", "Ala->Leu/Ile substitution": "NT=Ala->Xle;AC=1047;", "Ala->Lys substitution": "NT=Ala->Lys;AC=1048;", "Ala->Met substitution": "NT=Ala->Met;AC=1049;", "Ala->Asn substitution": "NT=Ala->Asn;AC=1050;", "Ala->Gln substitution": "NT=Ala->Gln;AC=1051;", "Ala->Arg substitution": "NT=Ala->Arg;AC=1052;", "Ala->Trp substitution": "NT=Ala->Trp;AC=1053;", "Ala->Tyr substitution": "NT=Ala->Tyr;AC=1054;", "Cys->Ala substitution": "NT=Cys->Ala;AC=1055;", "Cys->Asp substitution": "NT=Cys->Asp;AC=1056;", "Cys->Glu substitution": "NT=Cys->Glu;AC=1057;", "Cys->His substitution": "NT=Cys->His;AC=1058;", "Cys->Leu/Ile substitution": "NT=Cys->Xle;AC=1059;", "Cys->Lys substitution": "NT=Cys->Lys;AC=1060;", "Cys->Met substitution": "NT=Cys->Met;AC=1061;", "Cys->Asn substitution": "NT=Cys->Asn;AC=1062;", "Cys->Pro substitution": "NT=Cys->Pro;AC=1063;", "Cys->Gln substitution": "NT=Cys->Gln;AC=1064;", "Cys->Thr substitution": "NT=Cys->Thr;AC=1065;", "Cys->Val substitution": "NT=Cys->Val;AC=1066;", "Asp->Cys substitution": "NT=Asp->Cys;AC=1067;", "Asp->Phe substitution": "NT=Asp->Phe;AC=1068;", "Asp->Leu/Ile substitution": "NT=Asp->Xle;AC=1069;", "Asp->Lys substitution": "NT=Asp->Lys;AC=1070;", "Asp->Met substitution": "NT=Asp->Met;AC=1071;", "Asp->Pro substitution": "NT=Asp->Pro;AC=1072;", "Asp->Gln substitution": "NT=Asp->Gln;AC=1073;", "Asp->Arg substitution": "NT=Asp->Arg;AC=1074;", "Asp->Ser substitution": "NT=Asp->Ser;AC=1075;", "Asp->Thr substitution": "NT=Asp->Thr;AC=1076;", "Asp->Trp substitution": "NT=Asp->Trp;AC=1077;", "Glu->Cys substitution": "NT=Glu->Cys;AC=1078;", "Glu->Phe substitution": "NT=Glu->Phe;AC=1079;", "Glu->His substitution": "NT=Glu->His;AC=1080;", "Glu->Leu/Ile substitution": "NT=Glu->Xle;AC=1081;", "Glu->Met substitution": "NT=Glu->Met;AC=1082;", "Glu->Asn substitution": "NT=Glu->Asn;AC=1083;", "Glu->Pro substitution": "NT=Glu->Pro;AC=1084;", "Glu->Arg substitution": "NT=Glu->Arg;AC=1085;", "Glu->Ser substitution": "NT=Glu->Ser;AC=1086;", "Glu->Thr substitution": "NT=Glu->Thr;AC=1087;", "Glu->Trp substitution": "NT=Glu->Trp;AC=1088;", "Glu->Tyr substitution": "NT=Glu->Tyr;AC=1089;", "Phe->Ala substitution": "NT=Phe->Ala;AC=1090;", "Phe->Asp substitution": "NT=Phe->Asp;AC=1091;", "Phe->Glu substitution": "NT=Phe->Glu;AC=1092;", "Phe->Gly substitution": "NT=Phe->Gly;AC=1093;", "Phe->His substitution": "NT=Phe->His;AC=1094;", "Phe->Lys substitution": "NT=Phe->Lys;AC=1095;", "Phe->Met substitution": "NT=Phe->Met;AC=1096;", "Phe->Asn substitution": "NT=Phe->Asn;AC=1097;", "Phe->Pro substitution": "NT=Phe->Pro;AC=1098;", "Phe->Gln substitution": "NT=Phe->Gln;AC=1099;", "Phe->Arg substitution": "NT=Phe->Arg;AC=1100;", "Phe->Thr substitution": "NT=Phe->Thr;AC=1101;", "Phe->Trp substitution": "NT=Phe->Trp;AC=1102;", "Gly->Phe substitution": "NT=Gly->Phe;AC=1103;", "Gly->His substitution": "NT=Gly->His;AC=1104;", "Gly->Leu/Ile substitution": "NT=Gly->Xle;AC=1105;", "Gly->Lys substitution": "NT=Gly->Lys;AC=1106;", "Gly->Met substitution": "NT=Gly->Met;AC=1107;", "Gly->Asn substitution": "NT=Gly->Asn;AC=1108;", "Gly->Pro substitution": "NT=Gly->Pro;AC=1109;", "Gly->Gln substitution": "NT=Gly->Gln;AC=1110;", "Gly->Thr substitution": "NT=Gly->Thr;AC=1111;", "Gly->Tyr substitution": "NT=Gly->Tyr;AC=1112;", "His->Ala substitution": "NT=His->Ala;AC=1113;", "His->Cys substitution": "NT=His->Cys;AC=1114;", "His->Glu substitution": "NT=His->Glu;AC=1115;", "His->Phe substitution": "NT=His->Phe;AC=1116;", "His->Gly substitution": "NT=His->Gly;AC=1117;", "His->Lys substitution": "NT=His->Lys;AC=1119;", "His->Met substitution": "NT=His->Met;AC=1120;", "His->Ser substitution": "NT=His->Ser;AC=1121;", "His->Thr substitution": "NT=His->Thr;AC=1122;", "His->Val substitution": "NT=His->Val;AC=1123;", "His->Trp substitution": "NT=His->Trp;AC=1124;", "Leu/Ile->Ala substitution": "NT=Xle->Ala;AC=1125;", "Leu/Ile->Cys substitution": "NT=Xle->Cys;AC=1126;", "Leu/Ile->Asp substitution": "NT=Xle->Asp;AC=1127;", "Leu/Ile->Glu substitution": "NT=Xle->Glu;AC=1128;", "Leu/Ile->Gly substitution": "NT=Xle->Gly;AC=1129;", "Leu/Ile->Tyr substitution": "NT=Xle->Tyr;AC=1130;", "Lys->Ala substitution": "NT=Lys->Ala;AC=1131;", "Lys->Cys substitution": "NT=Lys->Cys;AC=1132;", "Lys->Asp substitution": "NT=Lys->Asp;AC=1133;", "Lys->Phe substitution": "NT=Lys->Phe;AC=1134;", "Lys->Gly substitution": "NT=Lys->Gly;AC=1135;", "Lys->His substitution": "NT=Lys->His;AC=1136;", "Lys->Pro substitution": "NT=Lys->Pro;AC=1137;", "Lys->Ser substitution": "NT=Lys->Ser;AC=1138;", "Lys->Val substitution": "NT=Lys->Val;AC=1139;", "Lys->Trp substitution": "NT=Lys->Trp;AC=1140;", "Lys->Tyr substitution": "NT=Lys->Tyr;AC=1141;", "Met->Ala substitution": "NT=Met->Ala;AC=1142;", "Met->Cys substitution": "NT=Met->Cys;AC=1143;", "Met->Asp substitution": "NT=Met->Asp;AC=1144;", "Met->Glu substitution": "NT=Met->Glu;AC=1145;", "Met->Phe substitution": "NT=Met->Phe;AC=1146;", "Met->Gly substitution": "NT=Met->Gly;AC=1147;", "Met->His substitution": "NT=Met->His;AC=1148;", "Met->Asn substitution": "NT=Met->Asn;AC=1149;", "Met->Pro substitution": "NT=Met->Pro;AC=1150;", "Met->Gln substitution": "NT=Met->Gln;AC=1151;", "Met->Ser substitution": "NT=Met->Ser;AC=1152;", "Met->Trp substitution": "NT=Met->Trp;AC=1153;", "Met->Tyr substitution": "NT=Met->Tyr;AC=1154;", "Asn->Ala substitution": "NT=Asn->Ala;AC=1155;", "Asn->Cys substitution": "NT=Asn->Cys;AC=1156;", "Asn->Glu substitution": "NT=Asn->Glu;AC=1157;", "Asn->Phe substitution": "NT=Asn->Phe;AC=1158;", "Asn->Gly substitution": "NT=Asn->Gly;AC=1159;", "Asn->Met substitution": "NT=Asn->Met;AC=1160;", "Asn->Pro substitution": "NT=Asn->Pro;AC=1161;", "Asn->Gln substitution": "NT=Asn->Gln;AC=1162;", "Asn->Arg substitution": "NT=Asn->Arg;AC=1163;", "Asn->Val substitution": "NT=Asn->Val;AC=1164;", "Asn->Trp substitution": "NT=Asn->Trp;AC=1165;", "Pro->Cys substitution": "NT=Pro->Cys;AC=1166;", "Pro->Asp substitution": "NT=Pro->Asp;AC=1167;", "Pro->Glu substitution": "NT=Pro->Glu;AC=1168;", "Pro->Phe substitution": "NT=Pro->Phe;AC=1169;", "Pro->Gly substitution": "NT=Pro->Gly;AC=1170;", "Pro->Lys substitution": "NT=Pro->Lys;AC=1171;", "Pro->Met substitution": "NT=Pro->Met;AC=1172;", "Pro->Asn substitution": "NT=Pro->Asn;AC=1173;", "Pro->Val substitution": "NT=Pro->Val;AC=1174;", "Pro->Trp substitution": "NT=Pro->Trp;AC=1175;", "Pro->Tyr substitution": "NT=Pro->Tyr;AC=1176;", "Gln->Ala substitution": "NT=Gln->Ala;AC=1177;", "Gln->Cys substitution": "NT=Gln->Cys;AC=1178;", "Gln->Asp substitution": "NT=Gln->Asp;AC=1179;", "Gln->Phe substitution": "NT=Gln->Phe;AC=1180;", "Gln->Gly substitution": "NT=Gln->Gly;AC=1181;", "Gln->Met substitution": "NT=Gln->Met;AC=1182;", "Gln->Asn substitution": "NT=Gln->Asn;AC=1183;", "Gln->Ser substitution": "NT=Gln->Ser;AC=1184;", "Gln->Thr substitution": "NT=Gln->Thr;AC=1185;", "Gln->Val substitution": "NT=Gln->Val;AC=1186;", "Gln->Trp substitution": "NT=Gln->Trp;AC=1187;", "Gln->Tyr substitution": "NT=Gln->Tyr;AC=1188;", "Arg->Ala substitution": "NT=Arg->Ala;AC=1189;", "Arg->Asp substitution": "NT=Arg->Asp;AC=1190;", "Arg->Glu substitution": "NT=Arg->Glu;AC=1191;", "Arg->Asn substitution": "NT=Arg->Asn;AC=1192;", "Arg->Val substitution": "NT=Arg->Val;AC=1193;", "Arg->Tyr substitution": "NT=Arg->Tyr;AC=1194;", "Arg->Phe substitution": "NT=Arg->Phe;AC=1195;", "Ser->Asp substitution": "NT=Ser->Asp;AC=1196;", "Ser->Glu substitution": "NT=Ser->Glu;AC=1197;", "Ser->His substitution": "NT=Ser->His;AC=1198;", "Ser->Lys substitution": "NT=Ser->Lys;AC=1199;", "Ser->Met substitution": "NT=Ser->Met;AC=1200;", "Ser->Gln substitution": "NT=Ser->Gln;AC=1201;", "Ser->Val substitution": "NT=Ser->Val;AC=1202;", "Thr->Cys substitution": "NT=Thr->Cys;AC=1203;", "Thr->Asp substitution": "NT=Thr->Asp;AC=1204;", "Thr->Glu substitution": "NT=Thr->Glu;AC=1205;", "Thr->Phe substitution": "NT=Thr->Phe;AC=1206;", "Thr->Gly substitution": "NT=Thr->Gly;AC=1207;", "Thr->His substitution": "NT=Thr->His;AC=1208;", "Thr->Gln substitution": "NT=Thr->Gln;AC=1209;", "Thr->Val substitution": "NT=Thr->Val;AC=1210;", "Thr->Trp substitution": "NT=Thr->Trp;AC=1211;", "Thr->Tyr substitution": "NT=Thr->Tyr;AC=1212;", "Val->Cys substitution": "NT=Val->Cys;AC=1213;", "Val->His substitution": "NT=Val->His;AC=1214;", "Val->Lys substitution": "NT=Val->Lys;AC=1215;", "Val->Asn substitution": "NT=Val->Asn;AC=1216;", "Val->Pro substitution": "NT=Val->Pro;AC=1217;", "Val->Gln substitution": "NT=Val->Gln;AC=1218;", "Val->Arg substitution": "NT=Val->Arg;AC=1219;", "Val->Ser substitution": "NT=Val->Ser;AC=1220;", "Val->Thr substitution": "NT=Val->Thr;AC=1221;", "Val->Trp substitution": "NT=Val->Trp;AC=1222;", "Val->Tyr substitution": "NT=Val->Tyr;AC=1223;", "Trp->Ala substitution": "NT=Trp->Ala;AC=1224;", "Trp->Asp substitution": "NT=Trp->Asp;AC=1225;", "Trp->Glu substitution": "NT=Trp->Glu;AC=1226;", "Trp->Phe substitution": "NT=Trp->Phe;AC=1227;", "Trp->His substitution": "NT=Trp->His;AC=1228;", "Trp->Lys substitution": "NT=Trp->Lys;AC=1229;", "Trp->Met substitution": "NT=Trp->Met;AC=1230;", "Trp->Asn substitution": "NT=Trp->Asn;AC=1231;", "Trp->Pro substitution": "NT=Trp->Pro;AC=1232;", "Trp->Gln substitution": "NT=Trp->Gln;AC=1233;", "Trp->Thr substitution": "NT=Trp->Thr;AC=1234;", "Trp->Val substitution": "NT=Trp->Val;AC=1235;", "Trp->Tyr substitution": "NT=Trp->Tyr;AC=1236;", "Tyr->Ala substitution": "NT=Tyr->Ala;AC=1237;", "Tyr->Glu substitution": "NT=Tyr->Glu;AC=1238;", "Tyr->Gly substitution": "NT=Tyr->Gly;AC=1239;", "Tyr->Lys substitution": "NT=Tyr->Lys;AC=1240;", "Tyr->Met substitution": "NT=Tyr->Met;AC=1241;", "Tyr->Pro substitution": "NT=Tyr->Pro;AC=1242;", "Tyr->Gln substitution": "NT=Tyr->Gln;AC=1243;", "Tyr->Arg substitution": "NT=Tyr->Arg;AC=1244;", "Tyr->Thr substitution": "NT=Tyr->Thr;AC=1245;", "Tyr->Val substitution": "NT=Tyr->Val;AC=1246;", "Tyr->Trp substitution": "NT=Tyr->Trp;AC=1247;", "Tyr->Leu/Ile substitution": "NT=Tyr->Xle;AC=1248;", "Azidohomoalanine coupled to reductively cleaved tag": "NT=AHA-SS;AC=1249;", "carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine": "NT=AHA-SS_CAM;AC=1250;", "Sulfo-SBED Label Photoreactive Biotin Crosslinker": "NT=Biotin:Thermo-33033;AC=1251;", "Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen": "NT=Biotin:Thermo-33033-H;AC=1252;", "S-(2-monomethylsuccinyl) cysteine": "NT=2-monomethylsuccinyl;AC=1253;", "o-toluene": "NT=Saligenin;AC=1254;", "o-toluyl-phosphorylation": "NT=Cresylphosphate;AC=1255;", "Cresyl-Saligenin-phosphorylation": "NT=CresylSaligeninPhosphate;AC=1256;", "Ub Bromide probe addition": "NT=Ub-Br2;AC=1257;", "Ubiquitin vinylmethylester": "NT=Ub-VME;AC=1258;", "Ub Fluorescein probe addition": "NT=Ub-fluorescein;AC=1261;", "S-(2-dimethylsuccinyl) cysteine": "NT=2-dimethylsuccinyl;AC=1262;", "Addition of Glycine": "NT=Gly;AC=1263;", "addition of GGE": "NT=pupylation;AC=1264;", "13C4 Methionine label": "NT=Label:13C(4);AC=1266;", "Oxidised 13C4 labelled Methionine": "NT=Label:13C(4)+Oxidation;AC=1267;", "N-Homocysteine thiolactone": "NT=HCysThiolactone;AC=1270;", "S-homocysteinylation": "NT=HCysteinyl;AC=1271;", "Side reaction of HisTag": "NT=UgiJoullie;AC=1276;", "Cys modified with dipy ligand": "NT=Dipyridyl;AC=1277;", "Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction": "NT=Furan;AC=1278;", "Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction": "NT=Difuran;AC=1279;", "1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine": "NT=BMP-piperidinol;AC=1281;", "Side reaction of PG with Side chain of aspartic or glutamic acid": "NT=UgiJoullieProGly;AC=1282;", "Side reaction of PGPG with Side chain of aspartic or glutamic acid": "NT=UgiJoullieProGlyProGly;AC=1283;", "Glycosylation with IME linked Hex(2) NeuAc": "NT=IMEHex(2)NeuAc(1);AC=1286;", "Loss of arginine due to transpeptidation": "NT=Arg-loss;AC=1287;", "Addition of arginine due to transpeptidation": "NT=Arg;AC=1288;", "Double Carbamidomethylation": "NT=Dicarbamidomethyl;AC=1290;", "Dimethyl-Medium": "NT=Dimethyl:2H(6);AC=1291;", "SUMOylation leaving GlyGlyGln": "NT=GGQ;AC=1292;", "SUMOylation leaving GlnThrGlyGly": "NT=QTGG;AC=1293;", "13C3 label for SILAC": "NT=Label:13C(3);AC=1296;", "SILAC or AQUA label": "NT=Label:13C(3)15N(1);AC=1297;", "13C4 15N1 label for SILAC": "NT=Label:13C(4)15N(1);AC=1298;", "2H(10) label": "NT=Label:2H(10);AC=1299;", "Addition of lysine due to transpeptidation": "NT=Lys;AC=1301;", "mTRAQ heavy": "NT=mTRAQ:13C(6)15N(2);AC=1302;", "N-acetyl neuraminic acid": "NT=NeuAc;AC=1303;", "N-glycoyl neuraminic acid": "NT=NeuGc;AC=1304;", "Reduced acrolein addition +58": "NT=Delta:H(6)C(3)O(1);AC=1312;", "Reduced acrolein addition +96": "NT=Delta:H(8)C(6)O(1);AC=1313;", "biotin hydrazide labeled acrolein addition +298": "NT=biotinAcrolein298;AC=1314;", "3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one": "NT=MM-diphenylpentanone;AC=1315;", "2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one": "NT=EHD-diphenylpentanone;AC=1317;", "Maleimide-Biotin + 2Water": "NT=Biotin:Thermo-21901+2H2O;AC=1320;", "Accurate mass for DiLeu 115 isobaric tag": "NT=DiLeu4plex115;AC=1321;", "Accurate mass for DiLeu 116 isobaric tag": "NT=DiLeu4plex;AC=1322;", "Accurate mass for DiLeu 117 isobaric tag": "NT=DiLeu4plex117;AC=1323;", "Accurate mass for DiLeu 118 isobaric tag": "NT=DiLeu4plex118;AC=1324;", "N-ethylmaleimideSulfur": "NT=NEMsulfur;AC=1326;", "N-ethylmaleimideSulfurWater": "NT=NEMsulfurWater;AC=1328;", "BisANS with loss of both sulfonates": "NT=bisANS-sulfonates;AC=1330;", "Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB)": "NT=DNCB_hapten;AC=1331;", "Biotin-PEG11-maleimide": "NT=Biotin:Thermo-21911;AC=1340;", "Native iodoacetyl Tandem Mass Tag\u00ae": "NT=iodoTMT;AC=1341;", "Sixplex iodoacetyl Tandem Mass Tag\u00ae": "NT=iodoTMT6plex;AC=1342;", "reaction with phenyl salicylate (PS)": "NT=PS_Hapten;AC=1345;", "Cy3 Maleimide mono-Reactive dye": "NT=Cy3-maleimide;AC=1348;", "modification of the lysine side chain from NH2 to guanidine with a H removed in favor of a benzyl group": "NT=benzylguanidine;AC=1349;", "A fixed +1 charge tag attached to the N-terminus of peptides": "NT=CarboxymethylDMAP;AC=1350;", "Formation of five membered aromatic heterocycle": "NT=azole;AC=1355;", "phosphate-ribosylation": "NT=phosphoRibosyl;AC=1356;", "D5 N-ethylmaleimide+water on cysteines": "NT=NEM:2H(5)+H2O;AC=1358;", "Crotonylation": "NT=Crotonyl;AC=1363;", "O-ethyl, N-dimethyl phosphate": "NT=O-Et-N-diMePhospho;AC=1364;", "Hex1dHex1": "NT=dHex(1)Hex(1);AC=1367;", "3-fold methylated lysine labelled with Acetyl_heavy": "NT=Methyl:2H(3)+Acetyl:2H(3);AC=1368;", "Oxidised 2H(3) labelled Methionine": "NT=Label:2H(3)+Oxidation;AC=1370;", "3-fold methylation with deuterated methyl groups": "NT=Trimethyl:2H(9);AC=1371;", "heavy acetylation": "NT=Acetyl:13C(2);AC=1372;", "Hex2dHex1": "NT=dHex(1)Hex(2);AC=1375;", "Hex3dHex1": "NT=dHex(1)Hex(3);AC=1376;", "Hex4dHex1": "NT=dHex(1)Hex(4);AC=1377;", "Hex5dHex1": "NT=dHex(1)Hex(5);AC=1378;", "Hex6dHex1": "NT=dHex(1)Hex(6);AC=1379;", "reaction with methyl vinyl sulfone": "NT=methylsulfonylethyl;AC=1380;", "reaction with ethyl vinyl sulfone": "NT=ethylsulfonylethyl;AC=1381;", "reaction with phenyl vinyl sulfone": "NT=phenylsulfonylethyl;AC=1382;", "PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linkage": "NT=PyridoxalPhosphateH2;AC=1383;", "methionine oxidation to homocysteic acid": "NT=Homocysteic_acid;AC=1384;", "ADP-ribosylation followed by conversion to hydroxamic acid via hydroxylamine": "NT=Hydroxamic_acid;AC=1385;", "Modification by hydroxylated mechloroethamine (HN-2)": "NT=HN2_mustard;AC=1388;", "Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3)": "NT=HN3_mustard;AC=1389;", "N-ethylmaleimide on cysteine sulfenic acid": "NT=Oxidation+NEM;AC=1390;", "fluorescein-hexanoate-NHS hydrolysis": "NT=NHS-fluorescein;AC=1391;", "Representative mass and accurate mass for 114": "NT=DiART6plex;AC=1392;", "Accurate mass for DiART6plex 115": "NT=DiART6plex115;AC=1393;", "Accurate mass for DiART6plex 116 and 119": "NT=DiART6plex116/119;AC=1394;", "Accurate mass for DiART6plex 117": "NT=DiART6plex117;AC=1395;", "Accurate mass for DiART6plex 118": "NT=DiART6plex118;AC=1396;", "iodoacetanilide derivative": "NT=Iodoacetanilide;AC=1397;", "13C labelled iodoacetanilide derivative": "NT=Iodoacetanilide:13C(6);AC=1398;", "Diaminopimelic acid-DSP monolinked": "NT=Dap-DSP;AC=1399;", "N-Acetylmuramic acid": "NT=MurNAc;AC=1400;", "Sumoylation by SUMO-1 after Cyanogen bromide (CNBr) cleavage": "NT=EEEDVIEVYQEQTGG;AC=1405;", "Sumoylation by SUMO-2/3 after Cyanogen bromide (CNBr) cleavage": "NT=EDEDTIDVFQQQTGG;AC=1406;", "A2G2S2/G2S2": "NT=Hex(5)HexNAc(4)NeuAc(2);AC=1408;", "A2G2S1/G2S1": "NT=Hex(5)HexNAc(4)NeuAc(1);AC=1409;", "FA2G2S1/G2FS1": "NT=dHex(1)Hex(5)HexNAc(4)NeuAc(1);AC=1410;", "FA2G2S2/G2FS2": "NT=dHex(1)Hex(5)HexNAc(4)NeuAc(2);AC=1411;", "O3S1HexNAc1": "NT=s-GlcNAc;AC=1412;", "H1O3P1Hex2": "NT=PhosphoHex(2);AC=1413;", "3-fold methylation with fully labelled methyl groups": "NT=Trimethyl:13C(3)2H(9);AC=1414;", "Loss of ammonia (15N)": "NT=15N-oxobutanoic;AC=1419;", "spermine adduct": "NT=spermine;AC=1420;", "spermidine adduct": "NT=spermidine;AC=1421;", "Biotin_PEG4": "NT=Biotin:Thermo-21330;AC=1423;", "Hex Pent": "NT=Hex(1)Pent(1);AC=1426;", "Hex HexA": "NT=Hex(1)HexA(1);AC=1427;", "Hex Pent(2)": "NT=Hex(1)Pent(2);AC=1428;", "Hex HexNAc Phos": "NT=Hex(1)HexNAc(1)Phos(1);AC=1429;", "Hex HexNAc Sulf": "NT=Hex(1)HexNAc(1)Sulf(1);AC=1430;", "Hex NeuAc ---OR--- HexNAc Kdn": "NT=Hex(1)NeuAc(1);AC=1431;", "Hex NeuGc": "NT=Hex(1)NeuGc(1);AC=1432;", "HexNAc NeuAc": "NT=HexNAc(1)NeuAc(1);AC=1434;", "HexNAc NeuGc": "NT=HexNAc(1)NeuGc(1);AC=1435;", "Hex HexNAc dHex Me": "NT=Hex(1)HexNAc(1)dHex(1)Me(1);AC=1436;", "Hex HexNAc dHex Me(2)": "NT=Hex(1)HexNAc(1)dHex(1)Me(2);AC=1437;", "Hex(2) HexNAc": "NT=Hex(2)HexNAc(1);AC=1438;", "Hex HexA HexNAc": "NT=Hex(1)HexA(1)HexNAc(1);AC=1439;", "Hex(2) HexNAc Me": "NT=Hex(2)HexNAc(1)Me(1);AC=1440;", "Hex Pent(3)": "NT=Hex(1)Pent(3);AC=1441;", "Hex NeuAc Pent": "NT=Hex(1)NeuAc(1)Pent(1);AC=1442;", "Hex(2) HexNAc Sulf": "NT=Hex(2)HexNAc(1)Sulf(1);AC=1443;", "Hex(2) NeuAc ---OR--- Hex HexNAc Kdn": "NT=Hex(2)NeuAc(1);AC=1444;", "Hex2 dHex2": "NT=dHex(2)Hex(2);AC=1445;", "dHex Hex(2) HexA": "NT=dHex(1)Hex(2)HexA(1);AC=1446;", "Hex HexNAc(2) Sulf": "NT=Hex(1)HexNAc(2)Sulf(1);AC=1447;", "dHex Hex(2) HexNAc(2) Pent": "NT=dHex(1)Hex(2)HexNAc(2)Pent(1);AC=1449;", "Hex(2) HexNAc(2) NeuAc ---OR--- dHex Hex HexNAc(2) NeuGc": "NT=Hex(2)HexNAc(2)NeuAc(1);AC=1450;", "Hex(3) HexNAc(2) Pent": "NT=Hex(3)HexNAc(2)Pent(1);AC=1451;", "Hex(4) HexNAc(2)": "NT=Hex(4)HexNAc(2);AC=1452;", "dHex Hex(4) HexNAc Pent": "NT=dHex(1)Hex(4)HexNAc(1)Pent(1);AC=1453;", "dHex Hex(3) HexNAc(2) Pent": "NT=dHex(1)Hex(3)HexNAc(2)Pent(1);AC=1454;", "Hex(3) HexNAc(2) NeuAc": "NT=Hex(3)HexNAc(2)NeuAc(1);AC=1455;", "Hex(4) HexNAc(2) Pent": "NT=Hex(4)HexNAc(2)Pent(1);AC=1456;", "Hex(3) HexNAc(3) Pent": "NT=Hex(3)HexNAc(3)Pent(1);AC=1457;", "Hex(5) HexNAc(2) Phos": "NT=Hex(5)HexNAc(2)Phos(1);AC=1458;", "dHex Hex(4) HexNAc(2) Pent": "NT=dHex(1)Hex(4)HexNAc(2)Pent(1);AC=1459;", "Hex(7) HexNAc": "NT=Hex(7)HexNAc(1);AC=1460;", "Hex(4) HexNAc(2) NeuAc ---OR--- Hex(3) HexNAc(2) dHex NeuGc": "NT=Hex(4)HexNAc(2)NeuAc(1);AC=1461;", "dHex Hex(5) HexNAc(2)": "NT=dHex(1)Hex(5)HexNAc(2);AC=1462;", "dHex Hex(3) HexNAc(3) Pent": "NT=dHex(1)Hex(3)HexNAc(3)Pent(1);AC=1463;", "Hex(3) HexNAc(4) Sulf": "NT=Hex(3)HexNAc(4)Sulf(1);AC=1464;", "M6/Man6": "NT=Hex(6)HexNAc(2);AC=1465;", "Hex(4) HexNAc(3) Pent": "NT=Hex(4)HexNAc(3)Pent(1);AC=1466;", "dHex Hex(4) HexNAc(3)": "NT=dHex(1)Hex(4)HexNAc(3);AC=1467;", "Hex(5) HexNAc(3)": "NT=Hex(5)HexNAc(3);AC=1468;", "Hex(3) HexNAc(4) Pent": "NT=Hex(3)HexNAc(4)Pent(1);AC=1469;", "Hex(6) HexNAc(2) Phos": "NT=Hex(6)HexNAc(2)Phos(1);AC=1470;", "dHex Hex(4) HexNAc(3) Sulf": "NT=dHex(1)Hex(4)HexNAc(3)Sulf(1);AC=1471;", "dHex Hex(5) HexNAc(2) Pent": "NT=dHex(1)Hex(5)HexNAc(2)Pent(1);AC=1472;", "Hex(8) HexNAc": "NT=Hex(8)HexNAc(1);AC=1473;", "dHex Hex(3) HexNAc(3) Pent(2)": "NT=dHex(1)Hex(3)HexNAc(3)Pent(2);AC=1474;", "dHex(2) Hex(3) HexNAc(3) Pent": "NT=dHex(2)Hex(3)HexNAc(3)Pent(1);AC=1475;", "dHex Hex(3) HexNAc(4) Sulf": "NT=dHex(1)Hex(3)HexNAc(4)Sulf(1);AC=1476;", "dHex Hex(6) HexNAc(2)": "NT=dHex(1)Hex(6)HexNAc(2);AC=1477;", "dHex Hex(4) HexNAc(3) Pent": "NT=dHex(1)Hex(4)HexNAc(3)Pent(1);AC=1478;", "Hex(4) HexNAc(4) Sulf": "NT=Hex(4)HexNAc(4)Sulf(1);AC=1479;", "M7/Man7": "NT=Hex(7)HexNAc(2);AC=1480;", "dHex(2) Hex(4) HexNAc(3)": "NT=dHex(2)Hex(4)HexNAc(3);AC=1481;", "Hex(5) HexNAc(3) Pent": "NT=Hex(5)HexNAc(3)Pent(1);AC=1482;", "Hex(4) HexNAc(3) NeuGc": "NT=Hex(4)HexNAc(3)NeuGc(1);AC=1483;", "dHex Hex(5) HexNAc(3)": "NT=dHex(1)Hex(5)HexNAc(3);AC=1484;", "dHex Hex(3) HexNAc(4) Pent": "NT=dHex(1)Hex(3)HexNAc(4)Pent(1);AC=1485;", "Hex(3) HexNAc(5) Sulf": "NT=Hex(3)HexNAc(5)Sulf(1);AC=1486;", "Hex(6) HexNAc(3)": "NT=Hex(6)HexNAc(3);AC=1487;", "Hex(3) HexNAc(4) NeuAc ---OR--- Hex(2) HexNAc(4) dHex NeuGc": "NT=Hex(3)HexNAc(4)NeuAc(1);AC=1488;", "Hex(4) HexNAc(4) Pent": "NT=Hex(4)HexNAc(4)Pent(1);AC=1489;", "Hex(7) HexNAc(2) Phos": "NT=Hex(7)HexNAc(2)Phos(1);AC=1490;", "Hex(4) HexNAc(4) Me(2) Pent": "NT=Hex(4)HexNAc(4)Me(2)Pent(1);AC=1491;", "dHex Hex(3) HexNAc(3) Pent(3) ---OR--- Hex(4) HexNAc(2) dHex(2) NeuAc": "NT=dHex(1)Hex(3)HexNAc(3)Pent(3);AC=1492;", "dHex Hex(5) HexNAc(3) Sulf": "NT=dHex(1)Hex(5)HexNAc(3)Sulf(1);AC=1493;", "dHex(2) Hex(3) HexNAc(3) Pent(2)": "NT=dHex(2)Hex(3)HexNAc(3)Pent(2);AC=1494;", "Hex(6) HexNAc(3) Phos": "NT=Hex(6)HexNAc(3)Phos(1);AC=1495;", "Hex(4) HexNAc(5)": "NT=Hex(4)HexNAc(5);AC=1496;", "dHex(3) Hex(3) HexNAc(3) Pent": "NT=dHex(3)Hex(3)HexNAc(3)Pent(1);AC=1497;", "dHex(2) Hex(4) HexNAc(3) Pent": "NT=dHex(2)Hex(4)HexNAc(3)Pent(1);AC=1498;", "dHex Hex(4) HexNAc(4) Sulf": "NT=dHex(1)Hex(4)HexNAc(4)Sulf(1);AC=1499;", "dHex Hex(7) HexNAc(2)": "NT=dHex(1)Hex(7)HexNAc(2);AC=1500;", "dHex Hex(4) HexNAc(3) NeuAc ---OR--- dHex(2) Hex(3) HexNAc(3) NeuGc": "NT=dHex(1)Hex(4)HexNAc(3)NeuAc(1);AC=1501;", "Hex(7) HexNAc(2) Phos(2)": "NT=Hex(7)HexNAc(2)Phos(2);AC=1502;", "Hex(5) HexNAc(4) Sulf": "NT=Hex(5)HexNAc(4)Sulf(1);AC=1503;", "M8/Man8": "NT=Hex(8)HexNAc(2);AC=1504;", "dHex Hex(3) HexNAc(4) Pent(2)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(2);AC=1505;", "dHex Hex(4) HexNAc(3) NeuGc ---OR--- Hex(5) HexNAc(3) NeuAc": "NT=dHex(1)Hex(4)HexNAc(3)NeuGc(1);AC=1506;", "dHex(2) Hex(3) HexNAc(4) Pent": "NT=dHex(2)Hex(3)HexNAc(4)Pent(1);AC=1507;", "dHex Hex(3) HexNAc(5) Sulf": "NT=dHex(1)Hex(3)HexNAc(5)Sulf(1);AC=1508;", "dHex Hex(6) HexNAc(3)": "NT=dHex(1)Hex(6)HexNAc(3);AC=1509;", "dHex Hex(3) HexNAc(4) NeuAc": "NT=dHex(1)Hex(3)HexNAc(4)NeuAc(1);AC=1510;", "dHex(3) Hex(3) HexNAc(4)": "NT=dHex(3)Hex(3)HexNAc(4);AC=1511;", "dHex Hex(4) HexNAc(4) Pent": "NT=dHex(1)Hex(4)HexNAc(4)Pent(1);AC=1512;", "Hex(4) HexNAc(5) Sulf": "NT=Hex(4)HexNAc(5)Sulf(1);AC=1513;", "Hex(7) HexNAc(3)": "NT=Hex(7)HexNAc(3);AC=1514;", "dHex Hex(4) HexNAc(3) NeuAc Sulf": "NT=dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1);AC=1515;", "Hex(5) HexNAc(4) Me(2) Pent": "NT=Hex(5)HexNAc(4)Me(2)Pent(1);AC=1516;", "Hex(3) HexNAc(6) Sulf": "NT=Hex(3)HexNAc(6)Sulf(1);AC=1517;", "dHex Hex(6) HexNAc(3) Sulf": "NT=dHex(1)Hex(6)HexNAc(3)Sulf(1);AC=1518;", "dHex Hex(4) HexNAc(5)": "NT=dHex(1)Hex(4)HexNAc(5);AC=1519;", "dHex Hex(5) HexA HexNAc(3) Sulf": "NT=dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1);AC=1520;", "Hex(7) HexNAc(3) Phos": "NT=Hex(7)HexNAc(3)Phos(1);AC=1521;", "Hex(6) HexNAc(4) Me(3)": "NT=Hex(6)HexNAc(4)Me(3);AC=1522;", "dHex(2) Hex(4) HexNAc(4) Sulf": "NT=dHex(2)Hex(4)HexNAc(4)Sulf(1);AC=1523;", "Hex(4) HexNAc(3) NeuAc(2)": "NT=Hex(4)HexNAc(3)NeuAc(2);AC=1524;", "dHex Hex(3) HexNAc(4) Pent(3)": "NT=dHex(1)Hex(3)HexNAc(4)Pent(3);AC=1525;", "dHex(2) Hex(5) HexNAc(3) Pent": "NT=dHex(2)Hex(5)HexNAc(3)Pent(1);AC=1526;", "dHex Hex(5) HexNAc(4) Sulf": "NT=dHex(1)Hex(5)HexNAc(4)Sulf(1);AC=1527;", "dHex(2) Hex(3) HexNAc(4) Pent(2)": "NT=dHex(2)Hex(3)HexNAc(4)Pent(2);AC=1528;", "dHex Hex(5) HexNAc(3) NeuAc": "NT=dHex(1)Hex(5)HexNAc(3)NeuAc(1);AC=1529;", "Hex(3) HexNAc(6) Sulf(2)": "NT=Hex(3)HexNAc(6)Sulf(2);AC=1530;", "M9/Man9": "NT=Hex(9)HexNAc(2);AC=1531;", "Hex(4) HexNAc(6)": "NT=Hex(4)HexNAc(6);AC=1532;", "dHex(3) Hex(3) HexNAc(4) Pent": "NT=dHex(3)Hex(3)HexNAc(4)Pent(1);AC=1533;", "dHex Hex(5) HexNAc(3) NeuGc ---OR--- Hex(6) HexNAc(3) NeuAc": "NT=dHex(1)Hex(5)HexNAc(3)NeuGc(1);AC=1534;", "dHex(2) Hex(4) HexNAc(4) Pent": "NT=dHex(2)Hex(4)HexNAc(4)Pent(1);AC=1535;", "dHex Hex(4) HexNAc(5) Sulf": "NT=dHex(1)Hex(4)HexNAc(5)Sulf(1);AC=1536;", "dHex Hex(7) HexNAc(3)": "NT=dHex(1)Hex(7)HexNAc(3);AC=1537;", "dHex Hex(5) HexNAc(4) Pent": "NT=dHex(1)Hex(5)HexNAc(4)Pent(1);AC=1538;", "dHex Hex(5) HexA HexNAc(3) Sulf(2)": "NT=dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2);AC=1539;", "Hex(3) HexNAc(7)": "NT=Hex(3)HexNAc(7);AC=1540;", "dHex(2) Hex(5) HexNAc(4)": "NT=dHex(2)Hex(5)HexNAc(4);AC=1541;", "dHex(2) Hex(4) HexNAc(3) NeuAc Sulf": "NT=dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1);AC=1542;", "dHex Hex(5) HexNAc(4) Sulf(2)": "NT=dHex(1)Hex(5)HexNAc(4)Sulf(2);AC=1543;", "dHex Hex(5) HexNAc(4) Me(2) Pent": "NT=dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1);AC=1544;", "Hex(5) HexNAc(4) NeuGc": "NT=Hex(5)HexNAc(4)NeuGc(1);AC=1545;", "dHex Hex(3) HexNAc(6) Sulf": "NT=dHex(1)Hex(3)HexNAc(6)Sulf(1);AC=1546;", "dHex Hex(6) HexNAc(4)": "NT=dHex(1)Hex(6)HexNAc(4);AC=1547;", "dHex Hex(5) HexNAc(3) NeuAc Sulf": "NT=dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1);AC=1548;", "Hex(7) HexNAc(4)": "NT=Hex(7)HexNAc(4);AC=1549;", "dHex Hex(5) HexNAc(3) NeuGc Sulf": "NT=dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1);AC=1550;", "Hex(4) HexNAc(5) NeuAc": "NT=Hex(4)HexNAc(5)NeuAc(1);AC=1551;", "Hex(6) HexNAc(4) Me(3) Pent": "NT=Hex(6)HexNAc(4)Me(3)Pent(1);AC=1552;", "dHex Hex(7) HexNAc(3) Sulf": "NT=dHex(1)Hex(7)HexNAc(3)Sulf(1);AC=1553;", "dHex Hex(7) HexNAc(3) Phos": "NT=dHex(1)Hex(7)HexNAc(3)Phos(1);AC=1554;", "dHex Hex(5) HexNAc(5)": "NT=dHex(1)Hex(5)HexNAc(5);AC=1555;", "dHex Hex(4) HexNAc(4) NeuAc Sulf": "NT=dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1);AC=1556;", "dHex(3) Hex(4) HexNAc(4) Sulf": "NT=dHex(3)Hex(4)HexNAc(4)Sulf(1);AC=1557;", "Hex(3) HexNAc(7) Sulf": "NT=Hex(3)HexNAc(7)Sulf(1);AC=1558;", "A3G3": "NT=Hex(6)HexNAc(5);AC=1559;", "Hex(5) HexNAc(4) NeuAc Sulf": "NT=Hex(5)HexNAc(4)NeuAc(1)Sulf(1);AC=1560;", "Hex(3) HexNAc(6) NeuAc": "NT=Hex(3)HexNAc(6)NeuAc(1);AC=1561;", "dHex(2) Hex(3) HexNAc(6)": "NT=dHex(2)Hex(3)HexNAc(6);AC=1562;", "Hex HexNAc NeuGc": "NT=Hex(1)HexNAc(1)NeuGc(1);AC=1563;", "dHex Hex(2) HexNAc": "NT=dHex(1)Hex(2)HexNAc(1);AC=1564;", "HexNAc(3) Sulf": "NT=HexNAc(3)Sulf(1);AC=1565;", "Hex(3) HexNAc": "NT=Hex(3)HexNAc(1);AC=1566;", "Hex HexNAc Kdn Sulf": "NT=Hex(1)HexNAc(1)Kdn(1)Sulf(1);AC=1567;", "HexNAc(2) NeuAc": "NT=HexNAc(2)NeuAc(1);AC=1568;", "HexNAc Kdn(2) ---OR--- Hex(2) HexNAc HexA": "NT=HexNAc(1)Kdn(2);AC=1570;", "Hex(3) HexNAc Me": "NT=Hex(3)HexNAc(1)Me(1);AC=1571;", "Hex(2) HexA Pent Sulf": "NT=Hex(2)HexA(1)Pent(1)Sulf(1);AC=1572;", "HexNAc(2) NeuGc": "NT=HexNAc(2)NeuGc(1);AC=1573;", "Hex(4) Phos": "NT=Hex(4)Phos(1);AC=1575;", "Hex HexNAc NeuAc Sulf": "NT=Hex(1)HexNAc(1)NeuAc(1)Sulf(1);AC=1577;", "Hex HexA HexNAc(2)": "NT=Hex(1)HexA(1)HexNAc(2);AC=1578;", "dHex Hex(2) HexNAc Sulf": "NT=dHex(1)Hex(2)HexNAc(1)Sulf(1);AC=1579;", "dHex HexNAc(3)": "NT=dHex(1)HexNAc(3);AC=1580;", "dHex Hex HexNAc Kdn ---OR--- Hex(2) dHex NeuAc": "NT=dHex(1)Hex(1)HexNAc(1)Kdn(1);AC=1581;", "Hex HexNAc(3)": "NT=Hex(1)HexNAc(3);AC=1582;", "HexNAc(2) NeuAc Sulf": "NT=HexNAc(2)NeuAc(1)Sulf(1);AC=1583;", "dHex(2) Hex(3)": "NT=dHex(2)Hex(3);AC=1584;", "Hex(2) HexA HexNAc Sulf": "NT=Hex(2)HexA(1)HexNAc(1)Sulf(1);AC=1585;", "dHex(2) Hex(2) HexA": "NT=dHex(2)Hex(2)HexA(1);AC=1586;", "dHex Hex HexNAc(2) Sulf": "NT=dHex(1)Hex(1)HexNAc(2)Sulf(1);AC=1587;", "dHex Hex HexNAc NeuAc": "NT=dHex(1)Hex(1)HexNAc(1)NeuAc(1);AC=1588;", "Hex(2) HexNAc(2) Sulf": "NT=Hex(2)HexNAc(2)Sulf(1);AC=1589;", "HexNAc NeuGc(2)": "NT=HexNAc(1)NeuGc(2);AC=1592;", "dHex Hex HexNAc NeuGc ---OR--- Hex(2) HexNAc NeuAc": "NT=dHex(1)Hex(1)HexNAc(1)NeuGc(1);AC=1593;", "dHex(2) Hex(2) HexNAc": "NT=dHex(2)Hex(2)HexNAc(1);AC=1594;", "Hex(2) HexNAc NeuGc": "NT=Hex(2)HexNAc(1)NeuGc(1);AC=1595;", "dHex Hex(3) HexNAc": "NT=dHex(1)Hex(3)HexNAc(1);AC=1596;", "dHex Hex(2) HexA HexNAc": "NT=dHex(1)Hex(2)HexA(1)HexNAc(1);AC=1597;", "Hex HexNAc(3) Sulf": "NT=Hex(1)HexNAc(3)Sulf(1);AC=1598;", "Hex(4) HexNAc": "NT=Hex(4)HexNAc(1);AC=1599;", "Hex HexNAc(2) NeuAc": "NT=Hex(1)HexNAc(2)NeuAc(1);AC=1600;", "Hex HexNAc(2) NeuGc": "NT=Hex(1)HexNAc(2)NeuGc(1);AC=1602;", "Hex(5) Phos": "NT=Hex(5)Phos(1);AC=1604;", "dHex(2) Hex HexNAc Kdn": "NT=dHex(2)Hex(1)HexNAc(1)Kdn(1);AC=1606;", "dHex Hex(3) HexNAc Sulf": "NT=dHex(1)Hex(3)HexNAc(1)Sulf(1);AC=1607;", "dHex Hex HexNAc(3)": "NT=dHex(1)Hex(1)HexNAc(3);AC=1608;", "dHex Hex(2) HexA HexNAc Sulf": "NT=dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1);AC=1609;", "Hex(2) HexNAc(3)": "NT=Hex(2)HexNAc(3);AC=1610;", "Hex HexNAc(2) NeuAc Sulf": "NT=Hex(1)HexNAc(2)NeuAc(1)Sulf(1);AC=1611;", "dHex(2) Hex(4)": "NT=dHex(2)Hex(4);AC=1612;", "dHex(2) HexNAc(2) Kdn": "NT=dHex(2)HexNAc(2)Kdn(1);AC=1614;", "dHex Hex(2) HexNAc(2) Sulf": "NT=dHex(1)Hex(2)HexNAc(2)Sulf(1);AC=1615;", "dHex HexNAc(4)": "NT=dHex(1)HexNAc(4);AC=1616;", "Hex HexNAc NeuAc NeuGc": "NT=Hex(1)HexNAc(1)NeuAc(1)NeuGc(1);AC=1617;", "dHex Hex HexNAc(2) Kdn ---OR--- Hex(2) HexNAc dHex NeuAc": "NT=dHex(1)Hex(1)HexNAc(2)Kdn(1);AC=1618;", "Hex HexNAc NeuGc(2)": "NT=Hex(1)HexNAc(1)NeuGc(2);AC=1619;", "Ac Hex HexNAc NeuAc(2)": "NT=Hex(1)HexNAc(1)NeuAc(2)Ac(1);AC=1620;", "dHex(2) Hex(2) HexA HexNAc": "NT=dHex(2)Hex(2)HexA(1)HexNAc(1);AC=1621;", "dHex Hex HexNAc(3) Sulf": "NT=dHex(1)Hex(1)HexNAc(3)Sulf(1);AC=1622;", "Hex(2) HexA NeuAc Pent Sulf": "NT=Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1);AC=1623;", "dHex Hex HexNAc(2) NeuAc": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(1);AC=1624;", "dHex Hex(3) HexA HexNAc": "NT=dHex(1)Hex(3)HexA(1)HexNAc(1);AC=1625;", "Hex(2) HexNAc(3) Sulf": "NT=Hex(2)HexNAc(3)Sulf(1);AC=1626;", "Hex(5) HexNAc": "NT=Hex(5)HexNAc(1);AC=1627;", "Ac(2) Hex HexNAc NeuAc(2)": "NT=Hex(1)HexNAc(1)NeuAc(2)Ac(2);AC=1630;", "Hex(2) HexNAc(2) NeuGc": "NT=Hex(2)HexNAc(2)NeuGc(1);AC=1631;", "Hex(5) Phos(3)": "NT=Hex(5)Phos(3);AC=1632;", "Hex(6) Phos": "NT=Hex(6)Phos(1);AC=1633;", "dHex Hex(2) HexA HexNAc(2)": "NT=dHex(1)Hex(2)HexA(1)HexNAc(2);AC=1634;", "dHex(2) Hex(3) HexNAc Sulf": "NT=dHex(2)Hex(3)HexNAc(1)Sulf(1);AC=1635;", "Hex HexNAc(3) NeuAc": "NT=Hex(1)HexNAc(3)NeuAc(1);AC=1636;", "dHex(2) Hex HexNAc(3)": "NT=dHex(2)Hex(1)HexNAc(3);AC=1637;", "Hex HexNAc(3) NeuGc": "NT=Hex(1)HexNAc(3)NeuGc(1);AC=1638;", "dHex Hex HexNAc(2) NeuAc Sulf": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1);AC=1639;", "dHex Hex(3) HexA HexNAc Sulf": "NT=dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1);AC=1640;", "dHex Hex HexA HexNAc(3)": "NT=dHex(1)Hex(1)HexA(1)HexNAc(3);AC=1641;", "Hex(2) HexNAc(2) NeuAc Sulf": "NT=Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1642;", "dHex(2) Hex(2) HexNAc(2) Sulf": "NT=dHex(2)Hex(2)HexNAc(2)Sulf(1);AC=1643;", "dHex(2) Hex HexNAc(2) Kdn ---OR--- Hex(2) HexNAc dHex(2) NeuAc": "NT=dHex(2)Hex(1)HexNAc(2)Kdn(1);AC=1644;", "dHex Hex HexNAc(4)": "NT=dHex(1)Hex(1)HexNAc(4);AC=1645;", "Hex(2) HexNAc(4)": "NT=Hex(2)HexNAc(4);AC=1646;", "Hex(2) HexNAc NeuGc(2)": "NT=Hex(2)HexNAc(1)NeuGc(2);AC=1647;", "dHex(2) Hex(4) HexNAc": "NT=dHex(2)Hex(4)HexNAc(1);AC=1648;", "Hex HexNAc(2) NeuAc(2)": "NT=Hex(1)HexNAc(2)NeuAc(2);AC=1649;", "dHex(2) Hex HexNAc(2) NeuAc": "NT=dHex(2)Hex(1)HexNAc(2)NeuAc(1);AC=1650;", "dHex Hex(2) HexNAc(3) Sulf": "NT=dHex(1)Hex(2)HexNAc(3)Sulf(1);AC=1651;", "dHex HexNAc(5)": "NT=dHex(1)HexNAc(5);AC=1652;", "dHex(2) Hex HexNAc(2) NeuGc ---OR--- Hex(2) HexNAc(2) dHex NeuAc ---OR--- Hex HexNAc(3) dHex Kdn": "NT=dHex(2)Hex(1)HexNAc(2)NeuGc(1);AC=1653;", "dHex(3) Hex(2) HexNAc(2)": "NT=dHex(3)Hex(2)HexNAc(2);AC=1654;", "Hex(3) HexNAc(3) Sulf": "NT=Hex(3)HexNAc(3)Sulf(1);AC=1655;", "dHex(2) Hex(2) HexNAc(2) Sulf(2)": "NT=dHex(2)Hex(2)HexNAc(2)Sulf(2);AC=1656;", "dHex Hex(2) HexNAc(2) NeuGc ---OR--- Hex(3) HexNAc(2) NeuAc": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(1);AC=1657;", "dHex Hex HexNAc(3) NeuAc": "NT=dHex(1)Hex(1)HexNAc(3)NeuAc(1);AC=1658;", "Hex(6) Phos(3)": "NT=Hex(6)Phos(3);AC=1659;", "dHex Hex(3) HexA HexNAc(2)": "NT=dHex(1)Hex(3)HexA(1)HexNAc(2);AC=1660;", "dHex Hex HexNAc(3) NeuGc ---OR--- Hex(2) HexNAc(3) NeuAc": "NT=dHex(1)Hex(1)HexNAc(3)NeuGc(1);AC=1661;", "Hex HexNAc(2) NeuAc(2) Sulf": "NT=Hex(1)HexNAc(2)NeuAc(2)Sulf(1);AC=1662;", "dHex(2) Hex(3) HexA HexNAc Sulf": "NT=dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1);AC=1663;", "Hex HexNAc NeuAc(3)": "NT=Hex(1)HexNAc(1)NeuAc(3);AC=1664;", "Hex(2) HexNAc(3) NeuGc": "NT=Hex(2)HexNAc(3)NeuGc(1);AC=1665;", "dHex Hex(2) HexNAc(2) NeuAc Sulf": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1666;", "dHex(3) Hex HexNAc(2) Kdn": "NT=dHex(3)Hex(1)HexNAc(2)Kdn(1);AC=1667;", "dHex(2) Hex(3) HexNAc(2) Sulf": "NT=dHex(2)Hex(3)HexNAc(2)Sulf(1);AC=1668;", "dHex(2) Hex(2) HexNAc(2) Kdn": "NT=dHex(2)Hex(2)HexNAc(2)Kdn(1);AC=1669;", "dHex(2) Hex(2) HexA HexNAc(2) Sulf": "NT=dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1);AC=1670;", "dHex Hex(2) HexNAc(4)": "NT=dHex(1)Hex(2)HexNAc(4);AC=1671;", "Hex HexNAc NeuGc(3)": "NT=Hex(1)HexNAc(1)NeuGc(3);AC=1672;", "dHex Hex HexNAc(3) NeuAc Sulf": "NT=dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1);AC=1673;", "dHex Hex(3) HexA HexNAc(2) Sulf": "NT=dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1);AC=1674;", "dHex Hex HexNAc(2) NeuAc(2)": "NT=dHex(1)Hex(1)HexNAc(2)NeuAc(2);AC=1675;", "dHex(3) HexNAc(3) Kdn": "NT=dHex(3)HexNAc(3)Kdn(1);AC=1676;", "Hex(2) HexNAc(3) NeuAc Sulf": "NT=Hex(2)HexNAc(3)NeuAc(1)Sulf(1);AC=1678;", "dHex(2) Hex(2) HexNAc(3) Sulf": "NT=dHex(2)Hex(2)HexNAc(3)Sulf(1);AC=1679;", "dHex(2) HexNAc(5)": "NT=dHex(2)HexNAc(5);AC=1680;", "Hex(2) HexNAc(2) NeuAc(2)": "NT=Hex(2)HexNAc(2)NeuAc(2);AC=1681;", "dHex(2) Hex(2) HexNAc(2) NeuAc ---OR--- Hex HexNAc(3) dHex(2) Kdn": "NT=dHex(2)Hex(2)HexNAc(2)NeuAc(1);AC=1682;", "dHex Hex(3) HexNAc(3) Sulf": "NT=dHex(1)Hex(3)HexNAc(3)Sulf(1);AC=1683;", "dHex(2) Hex(2) HexNAc(2) NeuGc ---OR--- Hex(3) HexNAc(2) dHex NeuAc ---OR--- Hex(2) HexNAc(3) dHex Kdn": "NT=dHex(2)Hex(2)HexNAc(2)NeuGc(1);AC=1684;", "Hex(2) HexNAc(5)": "NT=Hex(2)HexNAc(5);AC=1685;", "dHex Hex(3) HexNAc(2) NeuGc": "NT=dHex(1)Hex(3)HexNAc(2)NeuGc(1);AC=1686;", "Hex HexNAc(3) NeuAc(2)": "NT=Hex(1)HexNAc(3)NeuAc(2);AC=1687;", "dHex Hex(2) HexNAc(3) NeuAc": "NT=dHex(1)Hex(2)HexNAc(3)NeuAc(1);AC=1688;", "dHex(3) Hex(2) HexNAc(3)": "NT=dHex(3)Hex(2)HexNAc(3);AC=1689;", "Hex(7) Phos(3)": "NT=Hex(7)Phos(3);AC=1690;", "dHex Hex(4) HexA HexNAc(2)": "NT=dHex(1)Hex(4)HexA(1)HexNAc(2);AC=1691;", "Hex(3) HexNAc(3) NeuAc ---OR--- Hex(2) HexNAc(3) dHex NeuGc ---OR--- Hex(2) HexNAc(4) Kdn": "NT=Hex(3)HexNAc(3)NeuAc(1);AC=1692;", "dHex Hex(3) HexA(2) HexNAc(2)": "NT=dHex(1)Hex(3)HexA(2)HexNAc(2);AC=1693;", "Hex(2) HexNAc(2) NeuAc(2) Sulf": "NT=Hex(2)HexNAc(2)NeuAc(2)Sulf(1);AC=1694;", "dHex(2) Hex(2) HexNAc(2) NeuAc Sulf": "NT=dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1);AC=1695;", "Hex(3) HexNAc(3) NeuGc": "NT=Hex(3)HexNAc(3)NeuGc(1);AC=1696;", "dHex(4) Hex HexNAc(2) Kdn": "NT=dHex(4)Hex(1)HexNAc(2)Kdn(1);AC=1697;", "dHex(3) Hex(2) HexNAc(2) Kdn": "NT=dHex(3)Hex(2)HexNAc(2)Kdn(1);AC=1698;", "dHex(3) Hex(2) HexA HexNAc(2) Sulf": "NT=dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1);AC=1699;", "Hex(2) HexNAc(4) NeuAc": "NT=Hex(2)HexNAc(4)NeuAc(1);AC=1700;", "dHex(2) Hex(2) HexNAc(4)": "NT=dHex(2)Hex(2)HexNAc(4);AC=1701;", "dHex(2) Hex(3) HexA HexNAc(2) Sulf": "NT=dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1);AC=1702;", "dHex(4) HexNAc(3) Kdn": "NT=dHex(4)HexNAc(3)Kdn(1);AC=1703;", "Hex(2) HexNAc NeuGc(3)": "NT=Hex(2)HexNAc(1)NeuGc(3);AC=1705;", "dHex(4) Hex HexNAc Kdn(2)": "NT=dHex(4)Hex(1)HexNAc(1)Kdn(2);AC=1706;", "dHex Hex(2) HexNAc(3) NeuAc Sulf": "NT=dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1);AC=1707;", "dHex Hex(2) HexNAc(2) NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(2);AC=1708;", "dHex(3) Hex HexNAc(3) Kdn": "NT=dHex(3)Hex(1)HexNAc(3)Kdn(1);AC=1709;", "Hex(3) HexNAc(3) NeuAc Sulf": "NT=Hex(3)HexNAc(3)NeuAc(1)Sulf(1);AC=1711;", "Hex(3) HexNAc(2) NeuAc(2)": "NT=Hex(3)HexNAc(2)NeuAc(2);AC=1712;", "Hex(3) HexNAc(3) NeuGc Sulf": "NT=Hex(3)HexNAc(3)NeuGc(1)Sulf(1);AC=1713;", "dHex Hex(2) HexNAc(2) NeuGc(2)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(2);AC=1714;", "dHex(2) Hex(3) HexNAc(2) NeuGc ---OR--- Hex(4) HexNAc(2) dHex NeuAc": "NT=dHex(2)Hex(3)HexNAc(2)NeuGc(1);AC=1715;", "dHex Hex(3) HexA HexNAc(3) Sulf": "NT=dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1);AC=1716;", "Hex(2) HexNAc(3) NeuAc(2)": "NT=Hex(2)HexNAc(3)NeuAc(2);AC=1717;", "dHex(2) Hex(2) HexNAc(3) NeuAc": "NT=dHex(2)Hex(2)HexNAc(3)NeuAc(1);AC=1718;", "dHex(4) Hex(2) HexNAc(3)": "NT=dHex(4)Hex(2)HexNAc(3);AC=1719;", "Hex(2) HexNAc(3) NeuAc NeuGc": "NT=Hex(2)HexNAc(3)NeuAc(1)NeuGc(1);AC=1720;", "dHex(2) Hex(2) HexNAc(3) NeuGc ---OR--- Hex(3) HexNAc(3) dHex NeuAc ---OR--- Hex(2) HexNAc(4) dHex Kdn": "NT=dHex(2)Hex(2)HexNAc(3)NeuGc(1);AC=1721;", "dHex(3) Hex(3) HexNAc(3)": "NT=dHex(3)Hex(3)HexNAc(3);AC=1722;", "Hex(8) Phos(3)": "NT=Hex(8)Phos(3);AC=1723;", "dHex Hex(2) HexNAc(2) NeuAc(2) Sulf": "NT=dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1);AC=1724;", "Hex(2) HexNAc(3) NeuGc(2)": "NT=Hex(2)HexNAc(3)NeuGc(2);AC=1725;", "dHex(4) Hex(2) HexNAc(2) Kdn": "NT=dHex(4)Hex(2)HexNAc(2)Kdn(1);AC=1726;", "dHex Hex(2) HexNAc(4) NeuAc": "NT=dHex(1)Hex(2)HexNAc(4)NeuAc(1);AC=1727;", "dHex(3) Hex(2) HexNAc(4)": "NT=dHex(3)Hex(2)HexNAc(4);AC=1728;", "Hex HexNAc NeuGc(4)": "NT=Hex(1)HexNAc(1)NeuGc(4);AC=1729;", "dHex(4) Hex HexNAc(3) Kdn": "NT=dHex(4)Hex(1)HexNAc(3)Kdn(1);AC=1730;", "Hex(4) HexNAc(4) Sulf(2)": "NT=Hex(4)HexNAc(4)Sulf(2);AC=1732;", "dHex(3) Hex(2) HexNAc(3) Kdn ---OR--- Hex(3) HexNAc(2) dHex(3) NeuAc": "NT=dHex(3)Hex(2)HexNAc(3)Kdn(1);AC=1733;", "dHex(2) Hex(2) HexNAc(5)": "NT=dHex(2)Hex(2)HexNAc(5);AC=1735;", "dHex(2) Hex(3) HexA HexNAc(3) Sulf": "NT=dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1);AC=1736;", "dHex Hex(4) HexA HexNAc(3) Sulf": "NT=dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1);AC=1737;", "Hex(3) HexNAc(3) NeuAc(2)": "NT=Hex(3)HexNAc(3)NeuAc(2);AC=1738;", "dHex(2) Hex(3) HexNAc(3) NeuAc ---OR--- Hex(2) HexNAc(4) dHex(2) Kdn": "NT=dHex(2)Hex(3)HexNAc(3)NeuAc(1);AC=1739;", "dHex(4) Hex(3) HexNAc(3)": "NT=dHex(4)Hex(3)HexNAc(3);AC=1740;", "Hex(9) Phos(3)": "NT=Hex(9)Phos(3);AC=1742;", "dHex(2) HexNAc(7)": "NT=dHex(2)HexNAc(7);AC=1743;", "Hex(2) HexNAc NeuGc(4)": "NT=Hex(2)HexNAc(1)NeuGc(4);AC=1744;", "Hex(3) HexNAc(3) NeuAc(2) Sulf": "NT=Hex(3)HexNAc(3)NeuAc(2)Sulf(1);AC=1745;", "dHex(2) Hex(3) HexNAc(5)": "NT=dHex(2)Hex(3)HexNAc(5);AC=1746;", "dHex Hex(2) HexNAc(2) NeuGc(3)": "NT=dHex(1)Hex(2)HexNAc(2)NeuGc(3);AC=1747;", "dHex(2) Hex(4) HexA HexNAc(3) Sulf": "NT=dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1);AC=1748;", "Hex(2) HexNAc(3) NeuAc(3)": "NT=Hex(2)HexNAc(3)NeuAc(3);AC=1749;", "dHex Hex(3) HexNAc(3) NeuAc(2)": "NT=dHex(1)Hex(3)HexNAc(3)NeuAc(2);AC=1750;", "dHex(3) Hex(3) HexNAc(3) NeuAc": "NT=dHex(3)Hex(3)HexNAc(3)NeuAc(1);AC=1751;", "Hex(2) HexNAc(3) NeuGc(3)": "NT=Hex(2)HexNAc(3)NeuGc(3);AC=1752;", "Hex(10) Phos(3)": "NT=Hex(10)Phos(3);AC=1753;", "dHex Hex(2) HexNAc(4) NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(4)NeuAc(2);AC=1754;", "Hex HexNAc NeuGc(5)": "NT=Hex(1)HexNAc(1)NeuGc(5);AC=1755;", "Hex(4) HexNAc(4) NeuAc Sulf(2)": "NT=Hex(4)HexNAc(4)NeuAc(1)Sulf(2);AC=1756;", "Hex(4) HexNAc(4) NeuGc Sulf(2)": "NT=Hex(4)HexNAc(4)NeuGc(1)Sulf(2);AC=1757;", "dHex(2) Hex(3) HexNAc(3) NeuAc(2)": "NT=dHex(2)Hex(3)HexNAc(3)NeuAc(2);AC=1758;", "Hex(4) HexNAc(4) NeuAc Sulf(3)": "NT=Hex(4)HexNAc(4)NeuAc(1)Sulf(3);AC=1759;", "dHex(2) Hex(2) HexNAc(2)": "NT=dHex(2)Hex(2)HexNAc(2);AC=1760;", "dHex Hex(3) HexNAc(2)": "NT=dHex(1)Hex(3)HexNAc(2);AC=1761;", "dHex Hex(2) HexNAc(3)": "NT=dHex(1)Hex(2)HexNAc(3);AC=1762;", "Hex(3) HexNAc(3)": "NT=Hex(3)HexNAc(3);AC=1763;", "dHex Hex(3) HexNAc(2) Sulf": "NT=dHex(1)Hex(3)HexNAc(2)Sulf(1);AC=1764;", "dHex(2) Hex(3) HexNAc(2)": "NT=dHex(2)Hex(3)HexNAc(2);AC=1765;", "dHex Hex(4) HexNAc(2)": "NT=dHex(1)Hex(4)HexNAc(2);AC=1766;", "dHex(2) Hex(2) HexNAc(3)": "NT=dHex(2)Hex(2)HexNAc(3);AC=1767;", "dHex Hex(3) HexNAc(3)": "NT=dHex(1)Hex(3)HexNAc(3);AC=1768;", "Hex(4) HexNAc(3)": "NT=Hex(4)HexNAc(3);AC=1769;", "dHex(2) Hex(4) HexNAc(2)": "NT=dHex(2)Hex(4)HexNAc(2);AC=1770;", "dHex(2) Hex(3) HexNAc(3)": "NT=dHex(2)Hex(3)HexNAc(3);AC=1771;", "A3": "NT=Hex(3)HexNAc(5);AC=1772;", "Hex(4) HexNAc(3) NeuAc ---OR--- Hex(3) HexNAc(4) Kdn": "NT=Hex(4)HexNAc(3)NeuAc(1);AC=1773;", "dHex(2) Hex(3) HexNAc(4)": "NT=dHex(2)Hex(3)HexNAc(4);AC=1774;", "dHex Hex(3) HexNAc(5)": "NT=dHex(1)Hex(3)HexNAc(5);AC=1775;", "A4": "NT=Hex(3)HexNAc(6);AC=1776;", "Hex(4) HexNAc(4) NeuAc": "NT=Hex(4)HexNAc(4)NeuAc(1);AC=1777;", "dHex(2) Hex(4) HexNAc(4) ---OR--- Hex(4) HexNAc(4) dHex Pent Me": "NT=dHex(2)Hex(4)HexNAc(4);AC=1778;", "Hex(6) HexNAc(4)": "NT=Hex(6)HexNAc(4);AC=1779;", "Hex(5) HexNAc(5)": "NT=Hex(5)HexNAc(5);AC=1780;", "dHex Hex(3) HexNAc(6)": "NT=dHex(1)Hex(3)HexNAc(6);AC=1781;", "dHex Hex(4) HexNAc(4) NeuAc ---OR--- Hex(3) HexNAc(5) dHex Kdn": "NT=dHex(1)Hex(4)HexNAc(4)NeuAc(1);AC=1782;", "dHex(3) Hex(4) HexNAc(4)": "NT=dHex(3)Hex(4)HexNAc(4);AC=1783;", "dHex Hex(3) HexNAc(5) NeuAc": "NT=dHex(1)Hex(3)HexNAc(5)NeuAc(1);AC=1784;", "dHex(2) Hex(4) HexNAc(5)": "NT=dHex(2)Hex(4)HexNAc(5);AC=1785;", "Ac Hex HexNAc NeuAc": "NT=Hex(1)HexNAc(1)NeuAc(1)Ac(1);AC=1786;", "13C(2) 15N(2)": "NT=Label:13C(2)15N(2);AC=1787;", "Ammonium-quenched monolink of DSS/BS3 crosslinker": "NT=Xlink:DSS[155];AC=1789;", "SUMOylation by Giardia lamblia": "NT=NQIGG;AC=1799;", "Fluorescein-tyramine adduct by peroxidase activity": "NT=Fluorescein-tyramine;AC=1801;", "transamidation of glycine ethyl ester to glutamine": "NT=GEE;AC=1824;", "Simulate peptide-RNA conjugates": "NT=RNPXL;AC=1825;", "Pyro-Glu from E + Methylation": "NT=Glu->pyro-Glu+Methyl;AC=1826;", "Pyro-Glu from E + Methylation Medium": "NT=Glu->pyro-Glu+Methyl:2H(2)13C(1);AC=1827;", "LeumethylArgGlyGly": "NT=LRGG+methyl;AC=1828;", "LeudimethylArgGlyGly": "NT=LRGG+dimethyl;AC=1829;", "Biotin-Phenol": "NT=Biotin-tyramide;AC=1830;", "tris adduct causes 104 Da addition at asparagine-succinimide intermediate": "NT=Tris;AC=1831;", "Iodoacetamide derivative of stilbene (reaction product with thiol)": "NT=IASD;AC=1832;", "NP-40 synthetic polymer terminus": "NT=NP40;AC=1833;", "Tween 20 synthetic polymer terminus": "NT=Tween20;AC=1834;", "Tween 80 synthetic polymer terminus": "NT=Tween80;AC=1835;", "Triton synthetic polymer terminus": "NT=Triton;AC=1836;", "Brij 35 synthetic polymer terminus": "NT=Brij35;AC=1837;", "Brij 58 synthetic polymer terminus": "NT=Brij58;AC=1838;", "beta-Funaltrexamine": "NT=betaFNA;AC=1839;", "Fucosylated biantennary + 2 alphaGal": "NT=dHex(1)Hex(7)HexNAc(4);AC=1840;", "EZ-Link Sulfo-NHS-SS-Biotin": "NT=Biotin:Thermo-21328;AC=1841;", "disuccinimidyl sulfoxide CID cleavable cross-link": "NT=Xlink:DSSO;AC=1842;", "Cytidine monophosphate": "NT=PhosphoCytidine;AC=1843;", "EGS cross-linker": "NT=Xlink:EGS;AC=1844;", "Azidophenylalanine": "NT=AzidoF;AC=1845;", "Cys alkylation by dimethylaminoethyl halide": "NT=Dimethylaminoethyl;AC=1846;", "Glutarylation": "NT=Gluratylation;AC=1848;", "2-hydroxyisobutyrylation": "NT=hydroxyisobutyryl;AC=1849;", "S-Methyl Methyl phosphorothioate": "NT=MeMePhosphorothioate;AC=1868;", "Replacement of 3 protons by iron": "NT=Cation:Fe[III];AC=1870;", "DTT adduct of cysteine": "NT=DTT;AC=1871;", "Sulfenic Acid specific probe": "NT=DYn-2;AC=1872;", "Acetone chemical artifact": "NT=MesitylOxide;AC=1873;", "formaldehyde induced modifications": "NT=methylol;AC=1875;", "disuccinimidyl suberate (DSS)": "NT=Xlink:DSS;AC=1876;", "Tris-quenched monolink of DSS/BS3 crosslinker": "NT=Xlink:DSS[259];AC=1877;", "Water-quenched monolink of DSSO crosslinker": "NT=Xlink:DSSO[176];AC=1878;", "Ammonia-quenched monolink of DSSO crosslinker": "NT=Xlink:DSSO[175];AC=1879;", "Tris-quenched monolink of DSSO crosslinker": "NT=Xlink:DSSO[279];AC=1880;", "Alkene fragment of DSSO crosslinker": "NT=Xlink:DSSO[54];AC=1881;", "Thiol fragment of DSSO crosslinker": "NT=Xlink:DSSO[86];AC=1882;", "Sulfenic acid fragment of DSSO crosslinker": "NT=Xlink:DSSO[104];AC=1883;", "disuccinimidyl dibutyric urea CID cleavable cross-link": "NT=Xlink:BuUrBu;AC=1884;", "BuUr fragment of BuUrBu crosslinker": "NT=Xlink:BuUrBu[111];AC=1885;", "Bu fragment of BuUrBu crosslinker": "NT=Xlink:BuUrBu[85];AC=1886;", "Ammonia quenched monolink of BuUrBu crosslinker": "NT=Xlink:BuUrBu[213];AC=1887;", "Water quenched monolink of BuUrBu crosslinker": "NT=Xlink:BuUrBu[214];AC=1888;", "Tris quenched monolink of BuUrBu crosslinker": "NT=Xlink:BuUrBu[317];AC=1889;", "dimethyl 3,3\\'-dithiobispropionimidate": "NT=Xlink:DTBP;AC=1891;", "Disuccinimidyl tartrate crosslinker": "NT=Xlink:DST;AC=1892;", "dithiobis[succinimidylpropionate]": "NT=Xlink:DTSSP;AC=1893;", "succinimidyl 4-[N-maleimidomethyl]cyclohexane-1-carboxylate": "NT=Xlink:SMCC;AC=1895;", "Intact DSSO crosslinker": "NT=Xlink:DSSO[158];AC=1896;", "Intact EGS cross-linker": "NT=Xlink:EGS[226];AC=1897;", "Intact DSS/BS3 crosslinker": "NT=Xlink:DSS[138];AC=1898;", "Intact BuUrBu crosslinker": "NT=Xlink:BuUrBu[196];AC=1899;", "Intact DTBP crosslinker": "NT=Xlink:DTBP[172];AC=1900;", "Intact DST crosslinker": "NT=Xlink:DST[114];AC=1901;", "Intact DSP/DTSSP crosslinker": "NT=Xlink:DTSSP[174];AC=1902;", "Intact SMCC cross-link": "NT=Xlink:SMCC[219];AC=1903;", "Intact BS2-G crosslinker": "NT=Xlink:BS2G[96];AC=1905;", "Ammonium-quenched monolink of BS2-G crosslinker": "NT=Xlink:BS2G[113];AC=1906;", "Water-quenched monolink of BS2-G crosslinker": "NT=Xlink:BS2G[114];AC=1907;", "Tris-quenched monolink of BS2-G crosslinker": "NT=Xlink:BS2G[217];AC=1908;", "bis[sulfosuccinimidyl] glutarate": "NT=Xlink:BS2G;AC=1909;", "Replacement of 3 protons by aluminium": "NT=Cation:Al[III];AC=1910;", "Ammonia quenched monolink of DMP crosslinker": "NT=Xlink:DMP[139];AC=1911;", "Intact DMP crosslinker": "NT=Xlink:DMP[122];AC=1912;", "glyoxal-derived AGE": "NT=glyoxalAGE;AC=1913;", "Methionine oxidation to aspartic semialdehyde": "NT=Met->AspSA;AC=1914;", "In Bachi as Formylaspargine (typo?)": "NT=Formylasparagine;AC=1917;", "aldehyde and ketone modifications": "NT=Carbonyl;AC=1918;", "adduction of aflatoxin B1 Dialdehyde to lysine": "NT=AFB1_Dialdehyde;AC=1920;", "Proline oxidation to 5-hydroxy-2-aminovaleric acid": "NT=Pro->HAVA;AC=1922;", "Tryptophan oxidation to beta-unsaturated-2,4-bis-tryptophandione": "NT=Delta:H(-4)O(2);AC=1923;", "Tryptophan oxidation to hydroxy-bis-tryptophandione": "NT=Delta:H(-4)O(3);AC=1924;", "Tryptophan oxidation to dihydroxy-N-formaylkynurenine": "NT=Delta:O(4);AC=1925;", "methylglyoxal-derived carboxyethyllysine": "NT=Delta:H(4)C(3)O(2);AC=1926;", "methylglyoxal-derived argpyrimidine": "NT=Delta:H(4)C(5)O(1);AC=1927;", "crotonaldehyde-derived dimethyl-FDP-lysine": "NT=Delta:H(10)C(8)O(1);AC=1928;", "methylglyoxal-derived tetrahydropyrimidine": "NT=Delta:H(6)C(7)O(4);AC=1929;", "Pent HexNAc": "NT=Pent(1)HexNAc(1);AC=1931;", "Hex(2) O(3) S": "NT=Hex(2)Sulf(1);AC=1932;", "Hex:1 Pent:2 Me:1": "NT=Hex(1)Pent(2)Me(1);AC=1933;", "HexNAc(2) Sulf": "NT=HexNAc(2)Sulf(1);AC=1934;", "Hex Pent(3) Me": "NT=Hex(1)Pent(3)Me(1);AC=1935;", "Hex(2) Pent(2)": "NT=Hex(2)Pent(2);AC=1936;", "Hex(2) Pent(2) Me": "NT=Hex(2)Pent(2)Me(1);AC=1937;", "Hex(4) HexA": "NT=Hex(4)HexA(1);AC=1938;", "Hex(2) HexNAc Pent HexA": "NT=Hex(2)HexNAc(1)Pent(1)HexA(1);AC=1939;", "Hex(3) HexNAc HexA": "NT=Hex(3)HexNAc(1)HexA(1);AC=1940;", "Hex HexNAc(2) dHex(2) Sulf": "NT=Hex(1)HexNAc(2)dHex(2)Sulf(1);AC=1941;", "HexA(2) HexNAc(3)": "NT=HexA(2)HexNAc(3);AC=1942;", "dHex Hex(4) HexA": "NT=dHex(1)Hex(4)HexA(1);AC=1943;", "Hex(5) HexA": "NT=Hex(5)HexA(1);AC=1944;", "Hex(4) HexA HexNAc": "NT=Hex(4)HexA(1)HexNAc(1);AC=1945;", "dHex(3) Hex(3) HexNAc": "NT=dHex(3)Hex(3)HexNAc(1);AC=1946;", "Hex(6) HexNAc": "NT=Hex(6)HexNAc(1);AC=1947;", "Sulf dHex Hex HexNAc(4)": "NT=Hex(1)HexNAc(4)dHex(1)Sulf(1);AC=1948;", "dHex Hex(2) HexNAc NeuAc(2)": "NT=dHex(1)Hex(2)HexNAc(1)NeuAc(2);AC=1949;", "dHex(3) Hex(3) HexNAc(2)": "NT=dHex(3)Hex(3)HexNAc(2);AC=1950;", "dHex(2) Hex HexNAc(4) Sulf": "NT=dHex(2)Hex(1)HexNAc(4)Sulf(1);AC=1951;", "dHex Hex(2) HexNAc(4) Sulf(2)": "NT=dHex(1)Hex(2)HexNAc(4)Sulf(2);AC=1952;", "Sulf dHex(2) Hex(3) HexNAc(3)": "NT=dHex(2)Hex(3)HexNAc(3)Sulf(1);AC=1954;", "Me dHex(2) Hex(5) HexNAc(2)": "NT=dHex(2)Hex(5)HexNAc(2)Me(1);AC=1955;", "Sulf(2) dHex(2) Hex(2) HexNAc(4)": "NT=dHex(2)Hex(2)HexNAc(4)Sulf(2);AC=1956;", "Hex(9) HexNAc": "NT=Hex(9)HexNAc(1);AC=1957;", "dHex(3) Hex(2) HexNAc(4) Sulf(2)": "NT=dHex(3)Hex(2)HexNAc(4)Sulf(2);AC=1958;", "Hex(4) HexNAc(4) NeuGc": "NT=Hex(4)HexNAc(4)NeuGc(1);AC=1959;", "dHex(4) Hex(3) HexNAc(2) NeuAc(1)": "NT=dHex(4)Hex(3)HexNAc(2)NeuAc(1);AC=1960;", "Hex(3) HexNAc(5) NeuAc(1)": "NT=Hex(3)HexNAc(5)NeuAc(1);AC=1961;", "Hex(10) HexNAc(1)": "NT=Hex(10)HexNAc(1);AC=1962;", "dHex Hex(8) HexNAc(2)": "NT=dHex(1)Hex(8)HexNAc(2);AC=1963;", "Hex(3) HexNAc(4) NeuAc(2)": "NT=Hex(3)HexNAc(4)NeuAc(2);AC=1964;", "dHex(2) Hex(3) HexNAc(4) NeuAc": "NT=dHex(2)Hex(3)HexNAc(4)NeuAc(1);AC=1965;", "dHex(2) Hex(2) HexNAc(6) Sulf": "NT=dHex(2)Hex(2)HexNAc(6)Sulf(1);AC=1966;", "Hex(5) HexNAc(4) NeuAc Ac": "NT=Hex(5)HexNAc(4)NeuAc(1)Ac(1);AC=1967;", "Hex(3) HexNAc(3) NeuAc(3)": "NT=Hex(3)HexNAc(3)NeuAc(3);AC=1968;", "Hex(5) HexNAc(4) NeuAc Ac(2)": "NT=Hex(5)HexNAc(4)NeuAc(1)Ac(2);AC=1969;", "Unidentified modification of 162.1258 found in open search": "NT=Unknown:162;AC=1970;", "Unidentified modification of 176.7462 found in open search": "NT=Unknown:177;AC=1971;", "Unidentified modification of 210.1616 found in open search": "NT=Unknown:210;AC=1972;", "Unidentified modification of 216.1002 found in open search": "NT=Unknown:216;AC=1973;", "Unidentified modification of 234.0742 found in open search": "NT=Unknown:234;AC=1974;", "Unidentified modification of 248.1986 found in open search": "NT=Unknown:248;AC=1975;", "Unidentified modification of 249.981 found in open search": "NT=Unknown:250;AC=1976;", "Unidentified modification of 301.9864 found in open search": "NT=Unknown:302;AC=1977;", "Unidentified modification of 306.0952 found in open search": "NT=Unknown:306;AC=1978;", "Unidentified modification of 420.0506 found in open search": "NT=Unknown:420;AC=1979;", "O-diethylphosphothione": "NT=Diethylphosphothione;AC=1986;", "O-dimethylphosphothione": "NT=Dimethylphosphothione;AC=1987;", "O-methylphosphothione": "NT=monomethylphosphothione;AC=1989;", "Ubiquitin D (FAT10) leaving after chymotrypsin digestion Cys-Ile-Gly-Gly": "NT=CIGG;AC=1990;", "Ubiquitin D (FAT10) leaving after trypsin digestion Gly-Asn-Leu-Leu-Phe-Leu-Ala-Cys-Tyr-Cys-Ile-Gly-Gly": "NT=GNLLFLACYCIGG;AC=1991;", "5-glutamyl serotonin": "NT=serotonylation;AC=1992;", "heavy tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative": "NT=TMPP-Ac:13C(9);AC=1993;", "DST crosslinker cleaved by sodium periodate": "NT=Xlink:DST[56];AC=1999;", "NHS-Diazirine crosslinker": "NT=Xlink:SDA;AC=2000;", "carbobenzoxy-L-glutaminyl-glycine": "NT=ZQG;AC=2001;", "O-Dichloroethylphosphate": "NT=Haloxon;AC=2006;", "S-methyl amino phosphinate": "NT=Methamidophos-S;AC=2007;", "O-methyl amino phosphinate": "NT=Methamidophos-O;AC=2008;", "Loss of O2; nitro photochemical decomposition": "NT=Nitrene;AC=2014;", "Super Heavy Tandem Mass Tag": "NT=shTMT;AC=2015;", "TMTpro 16plex Tandem Mass Tag": "NT=TMTpro;AC=2016;", "Native TMTpro Tandem Mass Tag": "NT=TMTpro_zero;AC=2017;", "carbodiimide crosslinker": "NT=Xlink:EDC;AC=2018;", "Intact disulfide bridge": "NT=Xlink:Disulfide;AC=2020;", "Glycosylation of Serine/Threonine residues with KDO": "NT=Ser/Thr-KDO;AC=2022;", "andrographolide with the loss of H2O": "NT=Andro-H2O;AC=2025;", "Isopeptide bond formation with loss of ammonia": "NT=Xlink:KQisopeptide;AC=2026;", "Photo-induced histidine adduct": "NT=His+O(2);AC=2027;", "A3G3S3": "NT=Hex(6)HexNAc(5)NeuAc(3);AC=2028;", "A4G4": "NT=Hex(7)HexNAc(6);AC=2029;", "Photo-induced Methionine Adduct": "NT=Met+O(2);AC=2033;", "Photo-induced Glycine Adduct": "NT=Gly+O(2);AC=2034;", "Photo-induced Proline adduct": "NT=Pro+O(2);AC=2035;", "Photo-induced Lysine adduct": "NT=Lys+O(2);AC=2036;", "Photo-induced Glutamate adduct": "NT=Glu+O(2);AC=2037;", "addition of lophotoxin to tyrosine": "NT=LTX+Lophotoxin;AC=2039;", "MBS_233p24 plus peptide 1250p53": "NT=MBS+peptide;AC=2040;", "3-hydroxybenzyl phosphate": "NT=3-hydroxybenzyl-phosphate;AC=2041;", "phenyl phosphate": "NT=phenyl-phosphate;AC=2042;", "RNA-protein UVC-crosslinked, hydrofluoride-digested uridine adduct": "NT=RBS-ID_Uridine;AC=2044;", "Super Heavy TMTpro": "NT=shTMTpro;AC=2050;", "Intact DADPS Biotin Alkyne tag": "NT=Biotin:Aha-DADPS;AC=2052;", "Intact PC Biotin Alkyne tag": "NT=Biotin:Aha-PC;AC=2053;", "RNA-protein UVA-crosslinked, hydrofluoride-digested 4-thiouridine adduct": "NT=pRBS-ID_4-thiouridine;AC=2054;", "RNA-protein UVA-crosslinked, hydrofluoride-digested 6-thioguanosine adduct": "NT=pRBS-ID_6-thioguanosine;AC=2055;", "Iodoacetamido-LC-Phosphonic Acid derivative": "NT=6C-CysPAT;AC=2057;", "Intact DSPP/TBDSPP crosslinker": "NT=Xlink:DSPP[210];AC=2058;", "Water-quenched monolink of DSPP/TBDSPP crosslinker": "NT=Xlink:DSPP[228];AC=2059;", "Tris-quenched monolink of DSPP/TBDSPP crosslinker": "NT=Xlink:DSPP[331];AC=2060;", "Ammonia-quenched monolink of DSPP/TBDSPP crosslinker": "NT=Xlink:DSPP[226];AC=2061;", "desthiobiotinylation of cysteine with DBIA probe": "NT=DBIA;AC=2062;", "Monomodification of N\u03b3-propargyl-L-Gln probe with clicked desthiobiotin-azide": "NT=Mono_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2067;", "Dimodification of L-Glu and N\u03b3-propargyl-L-Gln probe with clicked desthiobiotin-azide": "NT=Di_L-Glu_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2068;", "Dimodification of L-Gln and N\u03b3-propargyl-L-Gln probe with clicked desthiobiotin-azide": "NT=Di_L-Gln_N\u03b3-propargyl-L-Gln_desthiobiotin;AC=2069;", "Monomodification with glutamine": "NT=L-Gln;AC=2070;", "Glyceroylation": "NT=Glyceroyl;AC=2072;", "probe; AMP analogon": "NT=N6pAMP;AC=2073;", "Dabcyl C2 Maleimide": "NT=DabMal;AC=2074;", "Thiol blocking reagent": "NT=NBF;AC=2079;", "Dimedone-Based Chemical Probes": "NT=DCP;AC=2080;", "Ethynlation of cysteine residues": "NT=Ethynylation;AC=2081;"} \ No newline at end of file diff --git a/Home.py b/Home.py index 7c2598f..d06c2e9 100644 --- a/Home.py +++ b/Home.py @@ -1,173 +1,161 @@ +import common import streamlit as st import pandas as pd -import re import numpy as np - -import ParsingModule -import warnings -warnings.filterwarnings("ignore") +import re import os -import json import gzip -local_dir = os.path.dirname(__file__) -from PIL import Image -import base64 -import io +import json +import ParsingModule +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode + st.set_page_config( - page_title="lesSDRF", + page_title="Additional columns", layout="wide", + page_icon="πŸ§ͺ", menu_items={ "Get help": "https://github.com/compomics/lesSDRF/issues", "Report a bug": "https://github.com/compomics/lesSDRF/issues", }, ) -def add_logo(logo_path, width, height): - """Read and return a resized logo""" - logo = Image.open(logo_path) - modified_logo = logo.resize((width, height)) - return modified_logo - -def get_base64_image(image): - img_buffer = io.BytesIO() - image.save(img_buffer, format="PNG") - img_str = base64.b64encode(img_buffer.getvalue()).decode() - return img_str - -my_logo = add_logo(logo_path="final_logo.png", width=149, height=58) - -st.markdown( - f""" - - """, - unsafe_allow_html=True, -) - -#get local directory using os, and add the data folder to the path +common.inject_sidebar_logo() +local_dir = os.path.dirname(__file__) -# use streamlit cache data to load gzipped jsons files from folder @st.cache_data def load_data(): - local_dir = os.path.dirname(__file__) + """Load gzipped JSON data and Unimod CSV""" folder_path = os.path.join(local_dir, "data") unimod_path = os.path.join(local_dir, "ontology", "unimod.csv") data = {} for filename in os.listdir(folder_path): - # do not load the files containing the following names: archae, bacteria, eukaryota, virus, unclassified, other sequences if re.search(r"archaea|bacteria|eukaryota|virus|unclassified|other sequences", filename): continue file_path = os.path.join(folder_path, filename) if filename.endswith(".json.gz"): try: with gzip.open(file_path, "rb") as f: + json_str = f.read().decode('utf-8') try: - json_bytes = f.read() - json_str = json_bytes.decode('utf-8') - file_data = json.loads(json_str) - filename_key = filename.replace(".json.gz", "") - data[filename_key] = file_data + data[filename.replace(".json.gz", "")] = json.loads(json_str) except json.JSONDecodeError: - st.write(f"Error decoding JSON in file {file_path}") + st.error(f"Error decoding JSON in file {file_path}") except gzip.BadGzipFile: - st.write(f"Error reading file {file_path}: not a gzipped file") + st.error(f"Error reading {file_path}: not a gzipped file") else: - st.write(f"Skipping file {file_path}: not a gzipped file") + st.warning(f"Skipping {file_path}: not a gzipped file") unimod = pd.read_csv(unimod_path, sep="\t") return data, unimod - data_dict, unimod = load_data() -if "data_dict" not in st.session_state: - st.session_state["data_dict"] = data_dict -if "unimod" not in st.session_state: - st.session_state["unimod"] = unimod + +# Store in session state +st.session_state.setdefault("data_dict", data_dict) +st.session_state.setdefault("unimod", unimod) + st.title("Welcome to lesSDRF") st.subheader("Spending less time on SDRF creates more time for amazing research") -st.write( - """By providing metadata in a machine-readable format, other researchers can access your data more easily and you maximize its impact. - The Sample and Data Relationship Format ([SDRF](https://www.nature.com/articles/s41467-021-26111-3)) is the HUPO-PSI recognized metadata format within proteomics. lesSDRF will streamline this annotation process for you. This tool is developed by the [CompOmics group](https://compomics.com/) and published in [Nature Communications](https://www.nature.com/articles/s41467-023-42543-5). \n""") -st.write(""" - On this homepage, select the species-specific default SDRF file that matches your study and provide the raw file names. - Then, follow the steps in the sidebar. -- Step 1: If you have a local metadata file, you can upload it to map to the SDRF file -- Step 2: Provide information on potential labels in your sample -- Step 3: Fill in the columns that are required for a valid SDRF -- Step 4: Fill in columns with additional information to further optimise your SDRF file -- Step 5: For atypical experiment types, you can check community suggested columns \n + +intro_text = """ +By providing metadata in a machine-readable format, other researchers can access your data more easily and you maximize its impact. +The Sample and Data Relationship Format ([SDRF](https://www.nature.com/articles/s41467-021-26111-3)) is the HUPO-PSI recognized metadata format within proteomics. +lesSDRF will streamline this annotation process for you. This tool is developed by the [CompOmics group](https://compomics.com/) and published in +[Nature Communications](https://www.nature.com/articles/s41467-023-42543-5). """ -) +st.write(intro_text) + +instructions_text = """ +On this homepage, select the species-specific default SDRF file that matches your study and provide the raw file names. +Then, follow the steps in the sidebar. -st.markdown("""You are able to download your intermediate file at any given time, so you can come back to the other steps whenever suits you. -Upload your intermediate SDRF file here:""") +- Step 1: If you have a local metadata file, you can upload it to map to the SDRF file +- Step 2: Provide information on potential labels in your sample +- Step 3: Annotate columns required by SDRF-Proteomics guidelines +- Step 4: Parse through supported ontologies to find terms matching your research +- Step 5: Community suggested columns for single cell proteomics, immunopeptidomics, structural proteomics etc. + +You can download your intermediate file at any given time and return to complete it later. +""" +st.write(instructions_text) + +st.markdown("Upload your intermediate SDRF file here:") upload_df = st.file_uploader( - "Upload intermediate SDRF file", type=["tsv"], accept_multiple_files=False, help='Upload a previously saved SDRF file. It should be in tsv format and should not contain more than 500 samples' + "Upload intermediate SDRF file", type=["tsv"], accept_multiple_files=False, + help='Upload a previously saved SDRF file. It should be in TSV format and not contain more than 500 samples' ) + if upload_df is not None: template_df = pd.read_csv(upload_df, sep='\t') - if template_df.shape[0]>500: - st.error('Too many samples, please upload a maximum of 500 samples') + if template_df.shape[0] > 1000: + st.error('Too many samples, please upload a maximum of 1000 samples') else: - st.write(template_df) - st.session_state["template_df"] = template_df + builder = GridOptionsBuilder.from_dataframe(template_df) + builder.configure_pagination(paginationAutoPageSize=False, paginationPageSize=500) + builder.configure_default_column(filterable=True, sortable=True, resizable=True) + gridOptions = builder.build() + AgGrid(template_df, gridOptions=gridOptions, height=500, custom_css={"#gridToolBar": {"padding-bottom": "0px !important",}}) -st.markdown("""In need of some inspiration? Download this example SDRF file to get an idea of the required output""") -with open(f'{local_dir}/example_SDRF.tsv', 'rb') as f: - st.download_button("Download example SDRF", f, file_name="example.sdrf.tsv") + st.session_state["template_df"] = template_df st.subheader("Start here with a completely new SDRF file") -species = ["","human", "cell-line", "default", "invertebrates", "plants", "vertebrates"] -selected_species = st.selectbox("""Select a species for the SDRF template which will contain the basic colummns to fill in for this specific species. -If your species is not in the drop down list, you can always use the default template.""", -species, help="This species selection will impact the default columns present in your SDRF template. You can always add more columns in step *Additional columns*.") -if selected_species != "": +species = ["", "human", "cell-line", "default", "invertebrates", "plants", "vertebrates"] +selected_species = st.selectbox( + "Select a species for the SDRF template:", + species, + help="This selection impacts the default columns in your SDRF template." +) + +if selected_species: folder_path = os.path.join(local_dir, "templates") - # Load the corresponding CSV file based on the selected species - template_df = pd.read_csv( - f"{folder_path}/sdrf-{selected_species}.sdrf.tsv", - sep="\t", + template_path = os.path.join(folder_path, f"sdrf-{selected_species}.sdrf.tsv") + template_df = pd.read_csv(template_path, sep="\t") + + # Add empty columns + for col in ["comment[modification parameters]", "comment[fragment mass tolerance]", "comment[precursor mass tolerance]"]: + template_df[col] = np.nan + + uploaded_names = st.text_input( + "Input raw file names (comma, tab, or space separated):", + help="Raw file names will populate comment[data file]. Max 2000 files." ) - template_df["comment[modification parameters]"] = np.nan - template_df["comment[fragment mass tolerance]"] = np.nan - template_df["comment[precursor mass tolerance]"] = np.nan - - # Ask user to upload filenames of their samples - filenames = [] - uploaded_names = st.text_input("Input raw file names as a comma or tab separated list", help="The raw file names will be input in the comment[data file] column and are the basis of your SDRF file. Input maximum 500 raw files") - if uploaded_names is not None: - #if comma separated, split on comma, if tab separated, split on tab - if "," in uploaded_names: - uploaded_names = uploaded_names.split(",") - elif "\t" in uploaded_names: - uploaded_names = uploaded_names.split("\t") - elif " " in uploaded_names: - uploaded_names = uploaded_names.split(" ") - #remove trailing and leading spaces - uploaded_names = [name.strip() for name in uploaded_names] - filenames.append(uploaded_names) - if len(filenames[0]) > 500: - st.error('Too many samples, please upload a maximum of 500 samples') - else: - st.write(f"Added filenames: {filenames[0]}") - ## Store filenames in the dataframe - template_df["comment[data file]"] = filenames[0] - st.session_state["template_df"] = template_df - ## Show the data in a table - st.write(template_df) - if "template_df" not in st.session_state: - st.session_state["template_df"] = template_df + if uploaded_names: + delimiters = [",", "\t", " "] + for delim in delimiters: + if delim in uploaded_names: + filenames = [name.strip() for name in uploaded_names.split(delim)] + break + else: + filenames = [uploaded_names.strip()] + + if len(filenames) > 2000: + st.error('Too many samples, please upload a maximum of 2000 samples') + else: + template_df["comment[data file]"] = filenames + st.session_state["template_df"] = template_df + builder = GridOptionsBuilder.from_dataframe(template_df) + builder.configure_pagination(paginationAutoPageSize=False, paginationPageSize=500) + builder.configure_default_column(filterable=True, sortable=True, resizable=True) + gridOptions = builder.build() + AgGrid(template_df, gridOptions=gridOptions, height=500, custom_css={"#gridToolBar": {"padding-bottom": "0px !important",}}) + with st.sidebar: - download = st.download_button("Press to download SDRF file",ParsingModule.convert_df(template_df), "intermediate_SDRF.sdrf.tsv", help="download your SDRF file") + if st.button("Validate SDRF file before download"): + # Perform validation or conversion + converted_data = ParsingModule.convert_df(template_df) + st.success("SDRF file validated! Ready to download.") + + st.download_button( + label="Download validated SDRF file", + data=converted_data, + file_name="intermediate_SDRF.sdrf.tsv", + mime="text/tab-separated-values" + ) + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: - *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") \ No newline at end of file + *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") \ No newline at end of file diff --git a/OBO_parser.ipynb b/OBO_parser.ipynb index e3c63e9..3adef02 100644 --- a/OBO_parser.ipynb +++ b/OBO_parser.ipynb @@ -2,81 +2,154 @@ "cells": [ { "cell_type": "code", - "execution_count": 12, + "execution_count": 4, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ - "Requirement already satisfied: pronto==2.5.3 in 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"execution_count": 4, + "execution_count": 22, "metadata": {}, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "\u001b[31mERROR: Could not find a version that satisfies the requirement st_aggrid (from versions: none)\u001b[0m\u001b[31m\n", + "\u001b[0m\u001b[31mERROR: No matching distribution found for st_aggrid\u001b[0m\u001b[31m\n", + "\u001b[0mNote: you may need to restart the kernel to use updated packages.\n" + ] + } + ], + "source": [ + "pip install st_aggrid" + ] + }, + { + "cell_type": "code", + "execution_count": 23, + "metadata": {}, + "outputs": [ + { + "ename": "ModuleNotFoundError", + "evalue": "No module named 'st_aggrid'", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[0;31mModuleNotFoundError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[23], line 6\u001b[0m\n\u001b[1;32m 4\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;21;01mjson\u001b[39;00m\n\u001b[1;32m 5\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;21;01mgzip\u001b[39;00m\n\u001b[0;32m----> 6\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;21;01mParsingModule\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;28;01mimport\u001b[39;00m transform_nested_dict_to_tree, flatten\n", + "File \u001b[0;32m~/git/Publication/lesSDRF/ParsingModule.py:11\u001b[0m\n\u001b[1;32m 9\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;21;01mpandas\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;28;01mas\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;21;01mpd\u001b[39;00m\n\u001b[1;32m 10\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[38;5;21;01mre\u001b[39;00m\n\u001b[0;32m---> 11\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m\u001b[38;5;250m 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"execution_count": 10, + "execution_count": 26, "metadata": {}, "outputs": [], "source": [ @@ -13143,12 +13216,11297 @@ "store_as_gzipped_json(cleavage_list, 'cleavage_list')" ] }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# MCO" + ] + }, + { + "cell_type": "code", + "execution_count": 12, + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/tmp/ipykernel_2976/840689916.py:1: UnicodeWarning: unsound encoding, assuming utf-8 (88% confidence)\n", + " mco = Ontology(\"/home/compomics/git/Publication/lesSDRF/ontology/mco.obo\")\n" + ] + } + ], + "source": [ + "mco = Ontology(\"/home/compomics/git/Publication/lesSDRF/ontology/mco.obo\")" + ] + }, + { + "cell_type": "code", + "execution_count": 27, + "metadata": {}, + "outputs": [ + { + "ename": "KeyError", + "evalue": "'medium'", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[0;31mKeyError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[27], line 2\u001b[0m\n\u001b[1;32m 1\u001b[0m medium_dict \u001b[38;5;241m=\u001b[39m get_obo_subclasses(mco, \u001b[38;5;124m'\u001b[39m\u001b[38;5;124mMCO:0000343\u001b[39m\u001b[38;5;124m'\u001b[39m, \u001b[38;5;124m'\u001b[39m\u001b[38;5;124mmedium\u001b[39m\u001b[38;5;124m'\u001b[39m, distance\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m1\u001b[39m)\n\u001b[0;32m----> 2\u001b[0m \u001b[43mmedium_dict\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mpop\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;124;43mmedium\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m)\u001b[49m\n\u001b[1;32m 3\u001b[0m medium_dict\n", + "\u001b[0;31mKeyError\u001b[0m: 'medium'" + ] + } + ], + "source": [ + "medium_dict = get_obo_subclasses(mco, 'MCO:0000343', 'medium', distance=1)\n", + "medium_dict.pop('medium')\n", + "medium_dict" + ] + }, + { + "cell_type": "code", + "execution_count": 14, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "3385" + ] + }, + "execution_count": 14, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "mco_terms = []\n", + "for i in list(mco.terms()): #list of all terms\n", + " #isolate the name\n", + " name = i.name\n", + " #add to cell list\n", + " mco_terms.append(name) \n", + "mco_terms.append('not available')\n", + "mco_terms.append('not applicable') \n", + "len(mco_terms)" + ] + }, + { + "cell_type": "code", + "execution_count": 15, + "metadata": {}, + "outputs": [], + "source": [ + "#given an pronto obo ontology term, find all subclasses and return them in a nested dictionary format\n", + "def get_subclasses(term):\n", + " subclasses = {}\n", + " for s in term.subclasses(distance=1):\n", + " #don't go over the first s\n", + " if s.name == term.name:\n", + " continue\n", + " subclasses[s.name] = get_subclasses(s)\n", + " return subclasses" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + " characteristics[medium]: Medium the culture was grown in/on\n", + " characteristics[medium supplements]: Additional substances added to the medium, most often antibiotics (might be merged into characteristics[treatment]?)\n", + " characteristics[temperature]: Temperature in which the culture was grown in\n", + " characteristics[optical density]: Optical density (OD600) of the culture\n", + " characteristics[growth phase]: In which growth phase the culture was in at time of harvest\n", + " characteristics[mutant]: describes if/how the sample was genetically altered (plasmids, CRISPr)\n", + "\n", + "Optional ones:\n", + "\n", + " characteristics[aeration]: Describes if the culture was grown under aerobic/anaerobic conditions\n", + " characteristics[pressure]: Pressure in which the culture was grown in\n", + " characteristics[pH]: pH in which the culture was grown in\n", + " characteristics[growth rate phenotype]\n" + ] + }, + { + "cell_type": "code", + "execution_count": 20, + "metadata": {}, + "outputs": [ + { + "ename": "TypeError", + "evalue": "list indices must be integers or slices, not str", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[0;31mTypeError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[20], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m \u001b[43mmco_terms\u001b[49m\u001b[43m[\u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;124;43mmedium\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m]\u001b[49m\n", + "\u001b[0;31mTypeError\u001b[0m: list indices must be integers or slices, not str" + ] + } + ], + "source": [ + "mco_terms['medium']" + ] + }, + { + "cell_type": "code", + "execution_count": 17, + "metadata": {}, + "outputs": [ + { + "ename": "TypeError", + "evalue": "list indices must be integers or slices, not str", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[0;31mTypeError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[17], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m medium \u001b[38;5;241m=\u001b[39m get_subclasses(\u001b[43mmco_terms\u001b[49m\u001b[43m[\u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;124;43mMCO:0000343\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m]\u001b[49m)\n\u001b[1;32m 2\u001b[0m medium\n", + "\u001b[0;31mTypeError\u001b[0m: list indices must be integers or slices, not str" + ] + } + ], + "source": [ + "medium = get_subclasses(mco_terms['MCO:0000343'])\n", + "medium" + ] + }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], - "source": [] + "source": [ + "cell_dict = get_subclasses(cl['CL:0000000'])" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "{'native cell': {'germ line cell': {'germ line stem cell': {'male germ line stem cell': {},\n", + " 'female germ line stem cell': {}},\n", + " 'germ cell': {'male germ cell': {'male germ line stem cell': {},\n", + " 'spermatocyte': {'primary spermatocyte': {},\n", + " 'secondary spermatocyte': {}},\n", + " 'spermatid': {'early spermatid': {}, 'late spermatid': {}},\n", + " 'spermatogonium': {},\n", + " 'male gamete': {'sperm': {'Y chromosome-bearing sperm cell': {},\n", + " 'X chromosome-bearing sperm cell': {},\n", + " 'motile sperm cell': {'amoeboid sperm cell': {},\n", + " 'flagellated sperm cell': {}},\n", + " 'non-motile sperm cell': {}}}},\n", + " 'female germ cell': {'female germ line stem cell': {},\n", + " 'oocyte': {'primary oocyte': {}, 'secondary oocyte': {}},\n", + " 'oogonial cell': {},\n", + " 'female gamete': {'egg cell': {}},\n", + " 'polar body': {'primary polar body': {}, 'secondary polar body': {}}},\n", + " 'gamete': {'male gamete': {'sperm': {'Y chromosome-bearing sperm cell': {},\n", + " 'X chromosome-bearing sperm cell': {},\n", + " 'motile sperm cell': {'amoeboid sperm cell': {},\n", + " 'flagellated sperm cell': {}},\n", + " 'non-motile sperm cell': {}}},\n", + " 'female gamete': {'egg cell': {}}},\n", + " 'cystoblast': {}},\n", + " 'primordial germ cell': {'pole cell': {},\n", + " 'male gonocyte': {},\n", + " 'ooblast': {}},\n", + " 'germline-derived nurse cell': {'invertebrate nurse cell': {}}},\n", + " 'ciliated cell': {'ciliated epithelial cell': {'ependymal cell': {'choroid plexus epithelial cell': {}},\n", + " 'brush border epithelial cell': {'enterocyte': {'enterocyte of epithelium of large intestine': {'enterocyte of epithelium proper of large intestine': {},\n", + " 'enterocyte of colon': {}},\n", + " 'enterocyte of appendix': {},\n", + " 'enterocyte of anorectum': {},\n", + " 'vacuolated fetal-type enterocyte': {},\n", + " 'lysosome-rich enterocyte': {},\n", + " 'enterocyte of epithelium of small intestine': {'enterocyte of epithelium of intestinal villus': {},\n", + " 'enterocyte of epithelium of crypt of Lieberkuhn of small intestine': {},\n", + " 'enterocyte of epithelium proper of small intestine': {'enterocyte of epithelium proper of duodenum': {},\n", + " 'enterocyte of epithelium proper of jejunum': {},\n", + " 'enterocyte of epithelium proper of ileum': {}}},\n", + " 'enterocyte of epithelium of duodenal gland': {}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}}},\n", + " 'multi-ciliated epithelial cell': {'ciliated columnar cell of tracheobronchial tree': {'ciliated cell of the bronchus': {}},\n", + " 'fallopian tube ciliated cell': {}},\n", + " 'single ciliated epithelial cell': {},\n", + " 'ciliated epithelial cell of esophagus': {},\n", + " 'endometrial ciliated epithelial cell': {'luminal endometrial ciliated epithelial cell': {},\n", + " 'glandular endometrial ciliated epithelial cell': {}}},\n", + " 'ciliated olfactory receptor neuron': {},\n", + " 'epidermal ciliary cell': {},\n", + " 'collar cell': {},\n", + " 'respiratory ciliated cell': {'ciliated columnar cell of tracheobronchial tree': {'ciliated cell of the bronchus': {}},\n", + " 'lung ciliated cell': {}}},\n", + " 'circulating cell': {'coelomocyte': {},\n", + " 'peripheral blood stem cell': {'cord blood hematopoietic stem cell': {}},\n", + " 'peripheral blood mononuclear cell': {'blood lymphocyte': {'peripheral blood lymphocyte': {}}}},\n", + " 'secretory cell': {'bone matrix secreting cell': {},\n", + " 'ameloblast': {},\n", + " 'cementoblast': {},\n", + " 'cholinergic neuron': {'somatomotor neuron': {'cranial somatomotor neuron': {},\n", + " 'lower motor neuron': {'spinal accessory motor neuron': {},\n", + " 'gamma motor neuron': {'dynamic gamma motor neuron': {},\n", + " 'static gamma motor neuron': {}},\n", + " 'alpha motor neuron': {},\n", + " 'anterior horn motor neuron': {},\n", + " 'beta motor neuron': {'static beta motor neuron': {},\n", + " 'dynamic beta motor neuron': {}}}},\n", + " 'sympathetic cholinergic neuron': {}},\n", + " 'glandular epithelial cell': {'goblet cell': {'respiratory goblet cell': {'nasal mucosa goblet cell': {},\n", + " 'tracheobronchial goblet cell': {'bronchial goblet cell': {'goblet cell of epithelium of lobar bronchus': {}},\n", + " 'tracheal goblet cell': {}},\n", + " 'lung goblet cell': {'goblet cell of epithelium of lobar bronchus': {}}},\n", + " 'intestine goblet cell': {'large intestine goblet cell': {'colon goblet cell': {},\n", + " 'anorectum goblet cell': {},\n", + " 'large intestine crypt goblet cell': {},\n", + " 'appendix goblet cell': {}},\n", + " 'small intestine goblet cell': {'intestinal villus goblet cell': {'duodenal goblet cell': {},\n", + " 'jejunal goblet cell': {},\n", + " 'ileal goblet cell': {}}}},\n", + " 'gastric goblet cell': {'gastric cardiac gland goblet cell': {},\n", + " 'principal gastric gland goblet cell': {},\n", + " 'pyloric gastric gland goblet cell': {}},\n", + " 'pancreatic goblet cell': {},\n", + " 'conjunctiva goblet cell': {}},\n", + " 'enteroendocrine cell': {'type D enteroendocrine cell': {'pancreatic D cell': {},\n", + " 'type D cell of colon': {},\n", + " 'type D cell of small intestine': {},\n", + " 'type D cell of stomach': {}},\n", + " 'enterochromaffin-like cell': {},\n", + " 'type G enteroendocrine cell': {},\n", + " 'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'PP cell': {'pancreatic PP cell': {}, 'PP cell of intestine': {}},\n", + " 'type A enteroendocrine cell': {'pancreatic A cell': {},\n", + " 'type A cell of stomach': {}},\n", + " 'P/D1 enteroendocrine cell': {'P enteroendocrine cell': {},\n", + " 'type D1 enteroendocrine cell': {}},\n", + " 'type I enteroendocrine cell': {},\n", + " 'type L enteroendocrine cell': {},\n", + " 'type N enteroendocrine cell': {},\n", + " 'type S enteroendocrine cell': {},\n", + " 'type TG enteroendocrine cell': {},\n", + " 'type X enteroendocrine cell': {},\n", + " 'pancreatic endocrine cell': {'type B pancreatic cell': {},\n", + " 'pancreatic A cell': {},\n", + " 'pancreatic D cell': {},\n", + " 'pancreatic PP cell': {},\n", + " 'pancreatic epsilon cell': {}},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'intestinal enteroendocrine cell': {'PP cell of intestine': {},\n", + " 'enteroendocrine cell of small intestine': {'type D cell of small intestine': {},\n", + " 'GIP cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}},\n", + " 'enteroendocrine cell of anorectum': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'stomach enteroendocrine cell': {}},\n", + " 'sweat secreting cell': {'dark cell of eccrine sweat gland': {},\n", + " 'clear cell of eccrine sweat gland': {}},\n", + " 'eccrine cell': {'dark cell of eccrine sweat gland': {},\n", + " 'clear cell of eccrine sweat gland': {}},\n", + " 'paneth cell': {'paneth cell of the appendix': {},\n", + " 'paneth cell of colon': {},\n", + " 'paneth cell of anorectum': {},\n", + " 'paneth cell of epithelium of small intestine': {'paneth cell of epithelium proper of small intestine': {},\n", + " 'paneth cell of epithelium of crypt of Lieberkuhn of small intestine': {}}},\n", + " 'acinar cell': {'pancreatic acinar cell': {},\n", + " 'acinar cell of sebaceous gland': {},\n", + " 'acinar cell of salivary gland': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'mucous neck cell': {'mucous neck cell of gastric gland': {}},\n", + " 'epithelial cell of thyroid gland': {'oxyphil cell of thyroid': {},\n", + " 'thyroid follicular cell': {}},\n", + " 'endocrine-paracrine cell of prostate gland': {},\n", + " 'glandular cell of esophagus': {'epithelial cell of esophageal gland proper': {},\n", + " 'epithelial cell of esophageal cardiac gland': {}},\n", + " 'glandular cell of the large intestine': {'paneth cell of anorectum': {},\n", + " 'enteroendocrine cell of anorectum': {},\n", + " 'large intestine goblet cell': {'colon goblet cell': {},\n", + " 'anorectum goblet cell': {},\n", + " 'large intestine crypt goblet cell': {},\n", + " 'appendix goblet cell': {}},\n", + " 'appendix glandular cell': {'paneth cell of the appendix': {},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'appendix goblet cell': {}},\n", + " 'colon glandular cell': {'paneth cell of colon': {},\n", + " 'colon goblet cell': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}}},\n", + " 'rectum glandular cell': {}},\n", + " 'glandular cell of stomach': {'peptic cell': {},\n", + " 'parietal cell': {},\n", + " 'mucous cell of stomach': {'type G enteroendocrine cell': {},\n", + " 'mucous neck cell of gastric gland': {},\n", + " 'surface mucosal cell of stomach': {},\n", + " 'stem cell of gastric gland': {},\n", + " 'gastric goblet cell': {'gastric cardiac gland goblet cell': {},\n", + " 'principal gastric gland goblet cell': {},\n", + " 'pyloric gastric gland goblet cell': {}}},\n", + " 'type A cell of stomach': {},\n", + " 'type D cell of stomach': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'stomach enteroendocrine cell': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'mammary gland glandular cell': {'mammary alveolar cell': {}},\n", + " 'epididymis glandular cell': {},\n", + " 'oviduct glandular cell': {'glandular cell of endometrium': {},\n", + " 'uterine cervix glandular cell': {},\n", + " 'fallopian tube secretory epithelial cell': {}},\n", + " 'gallbladder glandular cell': {},\n", + " 'parathyroid glandular cell': {'epithelial cell of parathyroid gland': {'chief cell of parathyroid gland': {'active chief cell of parathyroid gland': {},\n", + " 'dark chief cell of parathyroid gland': {},\n", + " 'clear chief cell of parathyroid gland': {},\n", + " 'inactive chief cell of parathyoid gland': {},\n", + " 'light chief cell of parathyroid gland': {}},\n", + " 'oxyphil cell of parathyroid gland': {},\n", + " 'transitional cell of parathyroid gland': {}}},\n", + " 'salivary gland glandular cell': {'acinar cell of salivary gland': {}},\n", + " 'seminal vesicle glandular cell': {},\n", + " 'small intestine glandular cell': {'enteroendocrine cell of small intestine': {'type D cell of small intestine': {},\n", + " 'GIP cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'paneth cell of epithelium of small intestine': {'paneth cell of epithelium proper of small intestine': {},\n", + " 'paneth cell of epithelium of crypt of Lieberkuhn of small intestine': {}},\n", + " 'small intestine goblet cell': {'intestinal villus goblet cell': {'duodenal goblet cell': {},\n", + " 'jejunal goblet cell': {},\n", + " 'ileal goblet cell': {}}},\n", + " 'duodenum glandular cell': {'duodenal goblet cell': {}}},\n", + " 'pancreas exocrine glandular cell': {'pancreatic acinar cell': {},\n", + " 'pancreatic goblet cell': {}},\n", + " 'adrenal gland glandular cell': {'cortical cell of adrenal gland': {'type I cell of adrenal cortex': {},\n", + " 'type II cell of adrenal cortex': {},\n", + " 'type III cell of adrenal cortex': {}},\n", + " 'adrenal cortex chromaffin cell': {}}},\n", + " 'exocrine cell': {'apocrine cell': {},\n", + " 'tear secreting cell': {},\n", + " 'sebum secreting cell': {'acinar cell of sebaceous gland': {}},\n", + " 'dark cell of eccrine sweat gland': {},\n", + " 'clear cell of eccrine sweat gland': {},\n", + " 'mucous neck cell of gastric gland': {},\n", + " 'stem cell of gastric gland': {},\n", + " 'gastric cardiac gland goblet cell': {},\n", + " 'principal gastric gland goblet cell': {},\n", + " 'pyloric gastric gland goblet cell': {},\n", + " 'mammary gland glandular cell': {'mammary alveolar cell': {}},\n", + " 'salivary gland glandular cell': {'acinar cell of salivary gland': {}},\n", + " 'pancreas exocrine glandular cell': {'pancreatic acinar cell': {},\n", + " 'pancreatic goblet cell': {}},\n", + " 'serous secreting cell of bronchus submucosal gland': {},\n", + " 'mucus secreting cell of tracheobronchial tree submucosal gland': {'mucus secreting cell of trachea gland': {},\n", + " 'mucus secreting cell of bronchus submucosal gland': {}}},\n", + " 'protein secreting cell': {'peptic cell': {},\n", + " 'insulin secreting cell': {'type B pancreatic cell': {}},\n", + " 'lysozyme secreting cell': {'paneth cell': {'paneth cell of the appendix': {},\n", + " 'paneth cell of colon': {},\n", + " 'paneth cell of anorectum': {},\n", + " 'paneth cell of epithelium of small intestine': {'paneth cell of epithelium proper of small intestine': {},\n", + " 'paneth cell of epithelium of crypt of Lieberkuhn of small intestine': {}}}},\n", + " 'prolactin secreting cell': {'mammosomatotroph': {}, 'mammotroph': {}},\n", + " 'digestive enzyme secreting cell': {},\n", + " 'androgen binding protein secreting cell': {'Sertoli cell': {}},\n", + " 'acinar cell': {'pancreatic acinar cell': {},\n", + " 'acinar cell of sebaceous gland': {},\n", + " 'acinar cell of salivary gland': {}},\n", + " 'kidney granular cell': {},\n", + " 'cumulus cell': {'corona radiata cell': {}}},\n", + " 'surfactant secreting cell': {'club cell': {}, 'type II pneumocyte': {}},\n", + " 'seromucus secreting cell': {'serous secreting cell': {'tracheobronchial serous cell': {'serous cell of epithelium of trachea': {},\n", + " 'serous cell of epithelium of bronchus': {},\n", + " 'serous cell of epithelium of terminal bronchiole': {},\n", + " 'serous cell of epithelium of lobular bronchiole': {},\n", + " 'serous secreting cell of bronchus submucosal gland': {}}},\n", + " 'mucus secreting cell': {'goblet cell': {'respiratory goblet cell': {'nasal mucosa goblet cell': {},\n", + " 'tracheobronchial goblet cell': {'bronchial goblet cell': {'goblet cell of epithelium of lobar bronchus': {}},\n", + " 'tracheal goblet cell': {}},\n", + " 'lung goblet cell': {'goblet cell of epithelium of lobar bronchus': {}}},\n", + " 'intestine goblet cell': {'large intestine goblet cell': {'colon goblet cell': {},\n", + " 'anorectum goblet cell': {},\n", + " 'large intestine crypt goblet cell': {},\n", + " 'appendix goblet cell': {}},\n", + " 'small intestine goblet cell': {'intestinal villus goblet cell': {'duodenal goblet cell': {},\n", + " 'jejunal goblet cell': {},\n", + " 'ileal goblet cell': {}}}},\n", + " 'gastric goblet cell': {'gastric cardiac gland goblet cell': {},\n", + " 'principal gastric gland goblet cell': {},\n", + " 'pyloric gastric gland goblet cell': {}},\n", + " 'pancreatic goblet cell': {},\n", + " 'conjunctiva goblet cell': {}},\n", + " 'mucous neck cell': {'mucous neck cell of gastric gland': {}},\n", + " 'surface mucosal cell of stomach': {},\n", + " 'epidermal mucus secreting cell': {},\n", + " 'mucus secreting cell of tracheobronchial tree submucosal gland': {'mucus secreting cell of trachea gland': {},\n", + " 'mucus secreting cell of bronchus submucosal gland': {}}}},\n", + " 'endocrine cell': {'enteroendocrine cell': {'type D enteroendocrine cell': {'pancreatic D cell': {},\n", + " 'type D cell of colon': {},\n", + " 'type D cell of small intestine': {},\n", + " 'type D cell of stomach': {}},\n", + " 'enterochromaffin-like cell': {},\n", + " 'type G enteroendocrine cell': {},\n", + " 'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'PP cell': {'pancreatic PP cell': {}, 'PP cell of intestine': {}},\n", + " 'type A enteroendocrine cell': {'pancreatic A cell': {},\n", + " 'type A cell of stomach': {}},\n", + " 'P/D1 enteroendocrine cell': {'P enteroendocrine cell': {},\n", + " 'type D1 enteroendocrine cell': {}},\n", + " 'type I enteroendocrine cell': {},\n", + " 'type L enteroendocrine cell': {},\n", + " 'type N enteroendocrine cell': {},\n", + " 'type S enteroendocrine cell': {},\n", + " 'type TG enteroendocrine cell': {},\n", + " 'type X enteroendocrine cell': {},\n", + " 'pancreatic endocrine cell': {'type B pancreatic cell': {},\n", + " 'pancreatic A cell': {},\n", + " 'pancreatic D cell': {},\n", + " 'pancreatic PP cell': {},\n", + " 'pancreatic epsilon cell': {}},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'intestinal enteroendocrine cell': {'PP cell of intestine': {},\n", + " 'enteroendocrine cell of small intestine': {'type D cell of small intestine': {},\n", + " 'GIP cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}},\n", + " 'enteroendocrine cell of anorectum': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'stomach enteroendocrine cell': {}},\n", + " 'neuroendocrine cell': {'amine precursor uptake and decarboxylation cell': {'chromaffin cell': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'interrenal chromaffin cell': {'interrenal norepinephrine type cell': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'chromaffin cell of paraganglion': {'chromaffin cell of paraaortic body': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}}},\n", + " 'paraganglial type 1 cell': {},\n", + " 'Feyrter cell': {'dense-core granulated cell of epithelium of trachea': {}},\n", + " 'magnocellular neurosecretory cell': {'oxytocin-secreting magnocellular cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'gonadotropin-releasing hormone neuron': {},\n", + " 'prostate neuroendocrine cell': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'parvocellular neurosecretory cell': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'thyroid hormone secreting cell': {},\n", + " 'chromophobe cell': {},\n", + " 'pinealocyte': {'type I pinealocyte': {}, 'type II pinealocyte': {}},\n", + " 'myoendocrine cell': {},\n", + " 'myocardial endocrine cell': {'myocardial endocrine cell of atrium': {},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'myocardial endocrine cell of interventricular septum': {}}},\n", + " 'peptide hormone secreting cell': {'insulin secreting cell': {'type B pancreatic cell': {}},\n", + " 'glucagon secreting cell': {'type A enteroendocrine cell': {'pancreatic A cell': {},\n", + " 'type A cell of stomach': {}}},\n", + " 'somatostatin secreting cell': {'type D enteroendocrine cell': {'pancreatic D cell': {},\n", + " 'type D cell of colon': {},\n", + " 'type D cell of small intestine': {},\n", + " 'type D cell of stomach': {}}},\n", + " 'somatotropin secreting cell': {'mammosomatotroph': {}, 'somatotroph': {}},\n", + " 'prolactin secreting cell': {'mammosomatotroph': {}, 'mammotroph': {}},\n", + " 'melanocyte stimulating hormone secreting cell': {},\n", + " 'calcitonin secreting cell': {'parafollicular cell': {}},\n", + " 'chief cell of parathyroid gland': {'active chief cell of parathyroid gland': {},\n", + " 'dark chief cell of parathyroid gland': {},\n", + " 'clear chief cell of parathyroid gland': {},\n", + " 'inactive chief cell of parathyoid gland': {},\n", + " 'light chief cell of parathyroid gland': {}},\n", + " 'adrenocorticotropic hormone secreting cell': {'corticotroph': {}},\n", + " 'oxytocin stimulating hormone secreting cell': {},\n", + " 'vasopressin stimulating hormone secreting cell': {},\n", + " 'secretin stimulating hormone secreting cell': {},\n", + " 'cholecystokin stimulating hormone secreting cell': {},\n", + " 'bombesin stimulating hormone secreting cell': {},\n", + " 'substance P secreting cell': {'type EC1 enteroendocrine cell': {}},\n", + " 'endorphin secreting cell': {'enkephalin secreting cell': {'type G enteroendocrine cell': {},\n", + " 'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}}}},\n", + " 'gastrin secreting cell': {'type G enteroendocrine cell': {},\n", + " 'type TG enteroendocrine cell': {}},\n", + " 'gastrin stimulating hormone secreting cell': {},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'PP cell': {'pancreatic PP cell': {}, 'PP cell of intestine': {}},\n", + " 'vasoactive intestinal peptide secreting cell': {'P/D1 enteroendocrine cell': {'P enteroendocrine cell': {},\n", + " 'type D1 enteroendocrine cell': {}}},\n", + " 'motilin secreting cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'type I enteroendocrine cell': {},\n", + " 'GIP cell': {},\n", + " 'type L enteroendocrine cell': {},\n", + " 'type N enteroendocrine cell': {},\n", + " 'type S enteroendocrine cell': {},\n", + " 'growth hormone releasing hormone secreting cell': {},\n", + " 'ghrelin secreting cell': {'type X enteroendocrine cell': {},\n", + " 'pancreatic epsilon cell': {}},\n", + " 'parvocellular neurosecretory cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'steroid hormone secreting cell': {'ecdysteroid secreting cell': {},\n", + " 'progesterone secreting cell': {'luteal cell': {'small luteal cell': {},\n", + " 'large luteal cell': {}}},\n", + " 'estradiol secreting cell': {},\n", + " 'mineralocorticoid secreting cell': {'type I cell of adrenal cortex': {}},\n", + " 'glucocorticoid secreting cell': {'type II cell of adrenal cortex': {}},\n", + " 'granulosa cell': {},\n", + " 'androgen secreting cell': {'theca cell': {},\n", + " 'hilus cell of ovary': {},\n", + " 'type III cell of adrenal cortex': {}},\n", + " 'cortical cell of adrenal gland': {'type I cell of adrenal cortex': {},\n", + " 'type II cell of adrenal cortex': {},\n", + " 'type III cell of adrenal cortex': {}}},\n", + " 'testosterone secreting cell': {'Leydig cell': {}, 'large luteal cell': {}},\n", + " 'hatching gland cell': {},\n", + " 'milk secreting cell': {'mammary alveolar cell': {}},\n", + " 'seminal fluid secreting cell': {},\n", + " 'excretory cell': {'renal filtration cell': {'podocyte': {'mesonephric podocyte': {},\n", + " 'metanephric podocyte': {},\n", + " 'pronephric podocyte': {}},\n", + " 'nephrocyte': {'pericardial nephrocyte': {},\n", + " 'garland cell': {},\n", + " 'disseminated nephrocyte': {}}}},\n", + " 'alkali secreting cell': {},\n", + " 'vaginal lubricant secreting cell': {},\n", + " 'luteinizing hormone secreting cell': {'gonadtroph': {}},\n", + " 'carbohydrate secreting cell': {'glycosaminoglycan secreting cell': {'chondrocyte': {'hypertrophic chondrocyte': {},\n", + " 'columnar chondrocyte': {},\n", + " 'tracheobronchial chondrocyte': {},\n", + " 'growth plate cartilage chondrocyte': {},\n", + " 'articular chondrocyte': {'periarticular chondrocyte': {},\n", + " 'articular chondrocyte of knee joint': {}}}}},\n", + " 'biogenic amine secreting cell': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'epinephrine secreting cell': {'type II cell of adrenal medulla': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'serotonin secreting cell': {'platelet': {},\n", + " 'parafollicular cell': {},\n", + " 'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'serotonergic neuron': {},\n", + " 'type S enteroendocrine cell': {},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}}},\n", + " 'noradrenergic cell': {'type I cell of adrenal medulla': {},\n", + " 'interrenal norepinephrine type cell': {},\n", + " 'noradrenergic neuron': {'sympathetic noradrenergic neuron': {}}},\n", + " 'histamine secreting cell': {'mature basophil': {},\n", + " 'mast cell': {'connective tissue type mast cell': {},\n", + " 'mucosal type mast cell': {}},\n", + " 'enterochromaffin-like cell': {},\n", + " 'type ECL enteroendocrine cell': {},\n", + " 'histaminergic neuron': {}}},\n", + " 'juvenile hormone secreting cell': {},\n", + " 'oenocyte': {},\n", + " 'paracrine cell': {'folliculostellate cell': {'folliculostellate cell of pars distalis of adenohypophysis': {}}},\n", + " 'GABAergic neuron': {'GABAergic interneuron': {'basket cell': {'cerebellum basket cell': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'Kolmer-Agduhr neuron': {},\n", + " 'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'GABAnergic interplexiform cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'Martinotti neuron': {'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'T Martinotti neuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'fan Martinotti neuron': {'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {}}},\n", + " 'GABAergic amacrine cell': {}},\n", + " 'medium spiny neuron': {'direct pathway medium spiny neuron': {'matrix D1 medium spiny neuron': {},\n", + " 'striosomal D1 medium spiny neuron': {}},\n", + " 'indirect pathway medium spiny neuron': {'matrix D2 medium spiny neuron': {},\n", + " 'striosomal D2 medium spiny neuron': {}},\n", + " 'D1/D2-hybrid medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D1 medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D2 medium spiny neuron': {},\n", + " 'RXFP1-positive interface island D1-medium spiny neuron': {},\n", + " 'eccentric medium spiny neuron': {}},\n", + " 'meis2 expressing cortical GABAergic cell': {},\n", + " 'cartwheel cell': {}},\n", + " 'glutamatergic neuron': {'retinal bipolar neuron': {'ON-bipolar cell': {'rod bipolar cell': {'rod bipolar cell (sensu Mus)': {}},\n", + " 'ON-blue cone bipolar cell': {},\n", + " 'diffuse bipolar 4 cell': {},\n", + " 'diffuse bipolar 6 cell': {},\n", + " 'invaginating midget bipolar cell': {},\n", + " 'giant bipolar cell': {}},\n", + " 'OFF-bipolar cell': {'diffuse bipolar 1 cell': {},\n", + " 'diffuse bipolar 2 cell': {},\n", + " 'diffuse bipolar 3a cell': {},\n", + " 'diffuse bipolar 3b cell': {},\n", + " 'flat midget bipolar cell': {},\n", + " 'OFFx cell': {}},\n", + " 'cone retinal bipolar cell': {'type 1 cone bipolar cell (sensu Mus)': {},\n", + " 'type 2 cone bipolar cell (sensu Mus)': {},\n", + " 'type 3 cone bipolar cell (sensu Mus)': {'type 3a cone bipolar cell': {},\n", + " 'type 3b cone bipolar cell': {}},\n", + " 'type 4 cone bipolar cell (sensu Mus)': {},\n", + " 'type 5 cone bipolar cell (sensu Mus)': {'type 5a cone bipolar cell': {},\n", + " 'type 5b cone bipolar cell': {}},\n", + " 'type 6 cone bipolar cell (sensu Mus)': {},\n", + " 'type 7 cone bipolar cell (sensu Mus)': {},\n", + " 'type 8 cone bipolar cell (sensu Mus)': {},\n", + " 'type 9 cone bipolar cell (sensu Mus)': {}}},\n", + " 'upper motor neuron': {},\n", + " 'cerebellum glutamatergic neuron': {'cerebellar granule cell': {}},\n", + " 'intratelencephalic-projecting glutamatergic cortical neuron': {'L2/3-6 intratelencephalic projecting glutamatergic cortical neuron': {'L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}}}},\n", + " 'extratelencephalic-projecting glutamatergic cortical neuron': {'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'von Economo neuron': {}},\n", + " 'near-projecting glutamatergic cortical neuron': {'L5/6 near-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'corticothalamic-projecting glutamatergic cortical neuron': {'L6 corticothalamic-projecting glutamatergic cortical neuron': {'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}}},\n", + " 'L6b glutamatergic cortical neuron': {'L6b subplate glutamatergic neuron of the primary motor cortex': {}},\n", + " 'amygdala excitatory neuron': {},\n", + " 'thalamic excitatory neuron': {},\n", + " 'unipolar brush cell': {}},\n", + " 'cerebrospinal fluid secreting cell': {},\n", + " 'neuromast mantle cell': {'anterior lateral line neuromast mantle cell': {},\n", + " 'posterior lateral line neuromast mantle cell': {}},\n", + " 'alarm substance cell': {},\n", + " 'cnidocyte': {},\n", + " 'hypocretin-secreting neuron': {},\n", + " 'Malpighian tubule stellate cell': {},\n", + " 'lung secretory cell': {'type II pneumocyte': {},\n", + " 'lung goblet cell': {'goblet cell of epithelium of lobar bronchus': {}},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'serous cell of epithelium of terminal bronchiole': {},\n", + " 'serous cell of epithelium of lobular bronchiole': {}},\n", + " 'glycinergic neuron': {'cartwheel cell': {},\n", + " 'glycinergic amacrine cell': {}},\n", + " 'valve interstitial cell': {},\n", + " 'catecholaminergic neuron': {'adrenergic neuron': {},\n", + " 'dopaminergic neuron': {'dopamanergic interplexiform cell': {},\n", + " 'midbrain dopaminergic neuron': {}},\n", + " 'noradrenergic neuron': {'sympathetic noradrenergic neuron': {}}}},\n", + " 'contractile cell': {'myoepithelial cell': {'myoepithelial cell of mammary gland': {'myoepithelial cell of lactiferous alveolus': {},\n", + " 'myoepithelial cell of lactiferous duct': {},\n", + " 'myoepithelial cell of acinus of lactiferous gland': {}},\n", + " 'peritubular myoid cell': {},\n", + " 'myoepithelial cell of intralobular lactiferous duct': {},\n", + " 'myoepithelial cell of sweat gland': {},\n", + " 'myoepithelial cell of terminal lactiferous duct': {},\n", + " 'myoepithelial cell of dilator pupillae': {},\n", + " 'myoepithelial cell of main lactiferous duct': {},\n", + " 'myoepithelial cell of primary lactiferous duct': {},\n", + " 'myoepithelial cell of secondary lactiferous duct': {},\n", + " 'myoepithelial cell of tertiary lactiferous duct': {},\n", + " 'myoepithelial cell of quarternary lactiferous duct': {},\n", + " 'myoepithelial cell of bronchus submucosal gland': {},\n", + " 'myoepithelial cell of trachea gland': {}},\n", + " 'myofibroblast cell': {'fibroblastic reticular cell': {'lymph node fibroblastic reticular cell': {'lymph node marginal reticular cell': {},\n", + " 'B cell zone reticular cell': {},\n", + " 'T cell zone reticular cell': {},\n", + " 'medullary reticular cell': {}}},\n", + " 'kidney interstitial myofibroblast': {},\n", + " 'secondary crest myofibroblast': {}},\n", + " 'muscle cell': {'striated muscle cell': {'obliquely striated muscle cell': {'obliquely striated somatic muscle cell': {}},\n", + " 'cardiac muscle cell': {'cardiac muscle cell (sensu Arthopoda)': {},\n", + " 'specialized cardiac myocyte': {'Purkinje myocyte': {'Purkinje myocyte of interventricular septum': {},\n", + " 'Purkinje myocyte of atrioventricular node': {},\n", + " 'Purkinje myocyte of internodal tract': {},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}},\n", + " 'nodal myocyte': {'myocyte of sinoatrial node': {'cardiac pacemaker cell of sinoatrial node': {},\n", + " 'transitional myocyte of sinoatrial node': {}},\n", + " 'myocyte of atrioventricular node': {'Purkinje myocyte of atrioventricular node': {}}},\n", + " 'transitional myocyte': {'transitional myocyte of interatrial septum': {},\n", + " 'transitional myocyte of interventricular septum': {},\n", + " 'transitional myocyte of sinoatrial node': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}}},\n", + " 'myocardial endocrine cell': {'myocardial endocrine cell of atrium': {},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'myocardial endocrine cell of interventricular septum': {}},\n", + " 'internodal tract myocyte': {'myocyte of anterior internodal tract': {},\n", + " 'myocyte of atrial branch of anterior internodal tract': {},\n", + " 'myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'myocyte of middle internodal tract': {},\n", + " 'myocyte of posterior internodal tract': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'Purkinje myocyte of internodal tract': {}}},\n", + " 'regular cardiac myocyte': {'regular interventricular cardiac myocyte': {},\n", + " 'regular atrial cardiac myocyte': {},\n", + " 'regular interatrial cardiac myocyte': {},\n", + " 'regular ventricular cardiac myocyte': {}},\n", + " 'fetal cardiomyocyte': {},\n", + " 'ventricular cardiac muscle cell': {'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}}},\n", + " 'myotube': {'skeletal muscle fiber': {'tongue muscle cell': {},\n", + " 'extrafusal muscle fiber': {'slow muscle cell': {'type I muscle cell': {}},\n", + " 'fast muscle cell': {'type II muscle cell': {'type IIa muscle cell': {},\n", + " 'type IIb muscle cell': {}},\n", + " 'white muscle cell': {'type IIb muscle cell': {}}},\n", + " 'red muscle cell': {'type I muscle cell': {},\n", + " 'type IIa muscle cell': {}},\n", + " 'intermediate muscle cell': {}},\n", + " 'intrafusal muscle fiber': {'nuclear chain fiber': {},\n", + " 'nuclear bag fiber': {'dynamic nuclear bag fiber': {},\n", + " 'static nuclear bag fiber': {}}},\n", + " 'embryonic skeletal muscle fiber': {},\n", + " 'fetal and neonatal skeletal muscle fiber': {}},\n", + " 'somatic muscle myotube': {'insect flight muscle cell': {}}},\n", + " 'striated visceral muscle cell': {'transversely striated visceral muscle cell': {'internodal tract myocyte': {'myocyte of anterior internodal tract': {},\n", + " 'myocyte of atrial branch of anterior internodal tract': {},\n", + " 'myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'myocyte of middle internodal tract': {},\n", + " 'myocyte of posterior internodal tract': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'Purkinje myocyte of internodal tract': {}},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'myocyte of sinoatrial node': {'cardiac pacemaker cell of sinoatrial node': {},\n", + " 'transitional myocyte of sinoatrial node': {}},\n", + " 'myocyte of atrioventricular node': {'Purkinje myocyte of atrioventricular node': {}},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}}},\n", + " 'skeletal muscle tissue of pectoralis major striated muscle cell': {}},\n", + " 'non-striated muscle cell': {'smooth muscle cell': {'smooth muscle cell neural crest derived': {},\n", + " 'sphincter associated smooth muscle cell': {'smooth muscle cell of sphincter of pupil': {}},\n", + " 'vascular associated smooth muscle cell': {'smooth muscle cell of the brain vasculature': {},\n", + " 'microcirculation associated smooth muscle cell': {'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'lymphatic vessel smooth muscle cell': {},\n", + " 'blood vessel smooth muscle cell': {'aortic smooth muscle cell': {},\n", + " 'smooth muscle cell of the umbilical vein': {},\n", + " 'smooth muscle cell of the brachiocephalic vasculature': {},\n", + " 'smooth muscle cell of the pulmonary artery': {},\n", + " 'smooth muscle cell of the coronary artery': {},\n", + " 'smooth muscle cell of the umbilical artery': {},\n", + " 'smooth muscle cell of the subclavian artery': {'smooth muscle cell of the internal thoracic artery': {}},\n", + " 'smooth muscle cell of the carotid artery': {},\n", + " 'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}}},\n", + " 'kidney granular cell': {},\n", + " 'enteric smooth muscle cell': {'smooth muscle cell of small intestine': {'smooth muscle fiber of duodenum': {},\n", + " 'smooth muscle fiber of jejunum': {},\n", + " 'smooth muscle fiber of ileum': {}},\n", + " 'smooth muscle cell of large intestine': {'smooth muscle cell of anorectum': {},\n", + " 'smooth muscle cell of colon': {'smooth muscle cell of cecum': {},\n", + " 'smooth muscle fiber of ascending colon': {},\n", + " 'smooth muscle fiber of transverse colon': {},\n", + " 'smooth muscle fiber of descending colon': {},\n", + " 'smooth muscle cell of sigmoid colon': {}},\n", + " 'smooth muscle cell of rectum': {},\n", + " 'smooth muscle cell of taenia coli': {},\n", + " 'smooth muscle cell of large intestine smooth muscle circular layer': {},\n", + " 'smooth muscle cell of large intestine smooth muscle longitudinal layer': {}}},\n", + " 'smooth muscle cell of bladder': {},\n", + " 'smooth muscle cell of the esophagus': {},\n", + " 'uterine smooth muscle cell': {'myometrial cell': {}},\n", + " 'smooth muscle cell of placenta': {},\n", + " 'tracheobronchial smooth muscle cell': {'bronchial smooth muscle cell': {},\n", + " 'smooth muscle cell of trachea': {},\n", + " 'bronchiolar smooth muscle cell': {}},\n", + " 'ciliary muscle cell': {},\n", + " 'smooth muscle cell of prostate': {},\n", + " 'kidney pelvis smooth muscle cell': {},\n", + " 'ureter smooth muscle cell': {}}},\n", + " 'somatic muscle cell': {'somatic muscle myotube': {'insect flight muscle cell': {}},\n", + " 'obliquely striated somatic muscle cell': {}},\n", + " 'visceral muscle cell': {'smooth muscle cell': {'smooth muscle cell neural crest derived': {},\n", + " 'sphincter associated smooth muscle cell': {'smooth muscle cell of sphincter of pupil': {}},\n", + " 'vascular associated smooth muscle cell': {'smooth muscle cell of the brain vasculature': {},\n", + " 'microcirculation associated smooth muscle cell': {'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'lymphatic vessel smooth muscle cell': {},\n", + " 'blood vessel smooth muscle cell': {'aortic smooth muscle cell': {},\n", + " 'smooth muscle cell of the umbilical vein': {},\n", + " 'smooth muscle cell of the brachiocephalic vasculature': {},\n", + " 'smooth muscle cell of the pulmonary artery': {},\n", + " 'smooth muscle cell of the coronary artery': {},\n", + " 'smooth muscle cell of the umbilical artery': {},\n", + " 'smooth muscle cell of the subclavian artery': {'smooth muscle cell of the internal thoracic artery': {}},\n", + " 'smooth muscle cell of the carotid artery': {},\n", + " 'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}}},\n", + " 'kidney granular cell': {},\n", + " 'enteric smooth muscle cell': {'smooth muscle cell of small intestine': {'smooth muscle fiber of duodenum': {},\n", + " 'smooth muscle fiber of jejunum': {},\n", + " 'smooth muscle fiber of ileum': {}},\n", + " 'smooth muscle cell of large intestine': {'smooth muscle cell of anorectum': {},\n", + " 'smooth muscle cell of colon': {'smooth muscle cell of cecum': {},\n", + " 'smooth muscle fiber of ascending colon': {},\n", + " 'smooth muscle fiber of transverse colon': {},\n", + " 'smooth muscle fiber of descending colon': {},\n", + " 'smooth muscle cell of sigmoid colon': {}},\n", + " 'smooth muscle cell of rectum': {},\n", + " 'smooth muscle cell of taenia coli': {},\n", + " 'smooth muscle cell of large intestine smooth muscle circular layer': {},\n", + " 'smooth muscle cell of large intestine smooth muscle longitudinal layer': {}}},\n", + " 'smooth muscle cell of bladder': {},\n", + " 'smooth muscle cell of the esophagus': {},\n", + " 'uterine smooth muscle cell': {'myometrial cell': {}},\n", + " 'smooth muscle cell of placenta': {},\n", + " 'tracheobronchial smooth muscle cell': {'bronchial smooth muscle cell': {},\n", + " 'smooth muscle cell of trachea': {},\n", + " 'bronchiolar smooth muscle cell': {}},\n", + " 'ciliary muscle cell': {},\n", + " 'smooth muscle cell of prostate': {},\n", + " 'kidney pelvis smooth muscle cell': {},\n", + " 'ureter smooth muscle cell': {}},\n", + " 'striated visceral muscle cell': {'transversely striated visceral muscle cell': {'internodal tract myocyte': {'myocyte of anterior internodal tract': {},\n", + " 'myocyte of atrial branch of anterior internodal tract': {},\n", + " 'myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'myocyte of middle internodal tract': {},\n", + " 'myocyte of posterior internodal tract': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'Purkinje myocyte of internodal tract': {}},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'myocyte of sinoatrial node': {'cardiac pacemaker cell of sinoatrial node': {},\n", + " 'transitional myocyte of sinoatrial node': {}},\n", + " 'myocyte of atrioventricular node': {'Purkinje myocyte of atrioventricular node': {}},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}}}}},\n", + " 'pericyte': {'mesangial cell': {'extraglomerular mesangial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'central nervous system pericyte': {'brain pericyte': {}},\n", + " 'lung pericyte': {},\n", + " 'renal interstitial pericyte': {'extraglomerular mesangial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'placental pericyte': {'decidual pericyte': {}}}},\n", + " 'sensory receptor cell': {'neuronal receptor cell': {'pain receptor cell': {'unimodal nocireceptor': {},\n", + " 'polymodal nocireceptor': {}},\n", + " 'touch receptor cell': {},\n", + " 'gravity sensitive cell': {},\n", + " 'acceleration receptive cell': {},\n", + " 'thermoreceptor cell': {'cold sensing thermoreceptor cell': {},\n", + " 'warmth sensing thermoreceptor cell': {}},\n", + " 'olfactory receptor cell': {'ciliated olfactory receptor neuron': {},\n", + " 'microvillous olfactory receptor neuron': {},\n", + " 'crypt olfactory receptor neuron': {}},\n", + " 'photoreceptor cell': {'eye photoreceptor cell': {'R7 photoreceptor cell': {},\n", + " 'camera-type eye photoreceptor cell': {'retinal cone cell': {'L cone cell': {},\n", + " 'M cone cell': {'510 nm-cone': {}},\n", + " 'S cone cell': {},\n", + " 'UV cone cell': {'360 nm-cone': {}}},\n", + " 'retinal rod cell': {}},\n", + " 'compound eye photoreceptor cell': {'R1 photoreceptor cell': {},\n", + " 'R2 photoreceptor cell': {},\n", + " 'R3 photoreceptor cell': {},\n", + " 'R4 photoreceptor cell': {},\n", + " 'R5 photoreceptor cell': {},\n", + " 'R6 photoreceptor cell': {},\n", + " 'R8 photoreceptor cell': {}}},\n", + " 'visible light photoreceptor cell': {'photopic photoreceptor cell': {'blue sensitive photoreceptor cell': {},\n", + " 'green sensitive photoreceptor cell': {},\n", + " 'red sensitive photoreceptor cell': {}},\n", + " 'R1 photoreceptor cell': {},\n", + " 'R2 photoreceptor cell': {},\n", + " 'R3 photoreceptor cell': {},\n", + " 'R4 photoreceptor cell': {},\n", + " 'R5 photoreceptor cell': {},\n", + " 'R6 photoreceptor cell': {},\n", + " 'R8 photoreceptor cell': {}},\n", + " 'scotopic photoreceptor cell': {},\n", + " 'UV sensitive photoreceptor cell': {'R7 photoreceptor cell': {}}},\n", + " 'Rohon-Beard neuron': {},\n", + " 'humidity receptor cell': {},\n", + " 'neuromast hair cell': {'anterior lateral line neuromast hair cell': {},\n", + " 'posterior lateral line neuromast hair cell': {}},\n", + " 'ear hair cell': {'vestibular hair cell': {'type II vestibular sensory cell': {'type 2 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}},\n", + " 'type I vestibular sensory cell': {'type 1 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}}},\n", + " 'tether cell': {},\n", + " 'macular hair cell': {},\n", + " 'cochlea auditory hair cell': {'cochlear inner hair cell': {},\n", + " 'cochlear outer hair cell': {}}},\n", + " 'stretch receptor cell': {'pressoreceptor cell': {}},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'sensory neuron of dorsal root ganglion': {},\n", + " 'trigeminal sensory neuron': {}},\n", + " 'sensory epithelial cell': {'taste receptor cell': {'type III taste bud cell': {},\n", + " 'type II taste cell': {},\n", + " 'type IV taste receptor cell': {},\n", + " 'type V taste receptor cell': {},\n", + " 'type I taste bud cell': {},\n", + " 'taste receptor cell of tongue': {}},\n", + " 'olfactory epithelial cell': {'basal cell of olfactory epithelium': {'olfactory epithelial supporting cell': {},\n", + " 'globose cell of olfactory epithelium': {},\n", + " 'basal proper cell of olfactory epithelium': {}}},\n", + " 'auditory epithelial cell': {'strial intermediate cell': {},\n", + " 'strial marginal cell': {},\n", + " 'strial basal cell': {},\n", + " 'auditory epithelial supporting cell': {'supporting cell of cochlea': {'Claudius cell': {},\n", + " 'Boettcher cell': {},\n", + " 'border cell of cochlea': {},\n", + " 'interdental cell of cochlea': {},\n", + " 'organ of Corti supporting cell': {'Hensen cell': {},\n", + " 'phalangeal cell': {\"Deiter's cell\": {}, 'inner phalangeal cell': {}},\n", + " 'pillar cell': {'internal pillar cell of cochlea': {},\n", + " 'external pillar cell of cochlea': {}}}},\n", + " 'supporting cell of vestibular epithelium': {'external supporting cell of vestibular epithelium': {},\n", + " 'external limiting cell of vestibular epithelium': {}}}},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}}},\n", + " 'chemoreceptor cell': {'olfactory receptor cell': {'ciliated olfactory receptor neuron': {},\n", + " 'microvillous olfactory receptor neuron': {},\n", + " 'crypt olfactory receptor neuron': {}},\n", + " 'pH receptor cell': {},\n", + " 'taste receptor cell': {'type III taste bud cell': {},\n", + " 'type II taste cell': {},\n", + " 'type IV taste receptor cell': {},\n", + " 'type V taste receptor cell': {},\n", + " 'type I taste bud cell': {},\n", + " 'taste receptor cell of tongue': {}},\n", + " 'olfactory epithelial cell': {'basal cell of olfactory epithelium': {'olfactory epithelial supporting cell': {},\n", + " 'globose cell of olfactory epithelium': {},\n", + " 'basal proper cell of olfactory epithelium': {}}},\n", + " 'Stiftchenzellen': {},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}}}},\n", + " 'electrically active cell': {'electrically responsive cell': {'muscle cell': {'striated muscle cell': {'obliquely striated muscle cell': {'obliquely striated somatic muscle cell': {}},\n", + " 'cardiac muscle cell': {'cardiac muscle cell (sensu Arthopoda)': {},\n", + " 'specialized cardiac myocyte': {'Purkinje myocyte': {'Purkinje myocyte of interventricular septum': {},\n", + " 'Purkinje myocyte of atrioventricular node': {},\n", + " 'Purkinje myocyte of internodal tract': {},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}},\n", + " 'nodal myocyte': {'myocyte of sinoatrial node': {'cardiac pacemaker cell of sinoatrial node': {},\n", + " 'transitional myocyte of sinoatrial node': {}},\n", + " 'myocyte of atrioventricular node': {'Purkinje myocyte of atrioventricular node': {}}},\n", + " 'transitional myocyte': {'transitional myocyte of interatrial septum': {},\n", + " 'transitional myocyte of interventricular septum': {},\n", + " 'transitional myocyte of sinoatrial node': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}}},\n", + " 'myocardial endocrine cell': {'myocardial endocrine cell of atrium': {},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'myocardial endocrine cell of interventricular septum': {}},\n", + " 'internodal tract myocyte': {'myocyte of anterior internodal tract': {},\n", + " 'myocyte of atrial branch of anterior internodal tract': {},\n", + " 'myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'myocyte of middle internodal tract': {},\n", + " 'myocyte of posterior internodal tract': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'Purkinje myocyte of internodal tract': {}}},\n", + " 'regular cardiac myocyte': {'regular interventricular cardiac myocyte': {},\n", + " 'regular atrial cardiac myocyte': {},\n", + " 'regular interatrial cardiac myocyte': {},\n", + " 'regular ventricular cardiac myocyte': {}},\n", + " 'fetal cardiomyocyte': {},\n", + " 'ventricular cardiac muscle cell': {'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}}},\n", + " 'myotube': {'skeletal muscle fiber': {'tongue muscle cell': {},\n", + " 'extrafusal muscle fiber': {'slow muscle cell': {'type I muscle cell': {}},\n", + " 'fast muscle cell': {'type II muscle cell': {'type IIa muscle cell': {},\n", + " 'type IIb muscle cell': {}},\n", + " 'white muscle cell': {'type IIb muscle cell': {}}},\n", + " 'red muscle cell': {'type I muscle cell': {},\n", + " 'type IIa muscle cell': {}},\n", + " 'intermediate muscle cell': {}},\n", + " 'intrafusal muscle fiber': {'nuclear chain fiber': {},\n", + " 'nuclear bag fiber': {'dynamic nuclear bag fiber': {},\n", + " 'static nuclear bag fiber': {}}},\n", + " 'embryonic skeletal muscle fiber': {},\n", + " 'fetal and neonatal skeletal muscle fiber': {}},\n", + " 'somatic muscle myotube': {'insect flight muscle cell': {}}},\n", + " 'striated visceral muscle cell': {'transversely striated visceral muscle cell': {'internodal tract myocyte': {'myocyte of anterior internodal tract': {},\n", + " 'myocyte of atrial branch of anterior internodal tract': {},\n", + " 'myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'myocyte of middle internodal tract': {},\n", + " 'myocyte of posterior internodal tract': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'Purkinje myocyte of internodal tract': {}},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'myocyte of sinoatrial node': {'cardiac pacemaker cell of sinoatrial node': {},\n", + " 'transitional myocyte of sinoatrial node': {}},\n", + " 'myocyte of atrioventricular node': {'Purkinje myocyte of atrioventricular node': {}},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}}},\n", + " 'skeletal muscle tissue of pectoralis major striated muscle cell': {}},\n", + " 'non-striated muscle cell': {'smooth muscle cell': {'smooth muscle cell neural crest derived': {},\n", + " 'sphincter associated smooth muscle cell': {'smooth muscle cell of sphincter of pupil': {}},\n", + " 'vascular associated smooth muscle cell': {'smooth muscle cell of the brain vasculature': {},\n", + " 'microcirculation associated smooth muscle cell': {'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'lymphatic vessel smooth muscle cell': {},\n", + " 'blood vessel smooth muscle cell': {'aortic smooth muscle cell': {},\n", + " 'smooth muscle cell of the umbilical vein': {},\n", + " 'smooth muscle cell of the brachiocephalic vasculature': {},\n", + " 'smooth muscle cell of the pulmonary artery': {},\n", + " 'smooth muscle cell of the coronary artery': {},\n", + " 'smooth muscle cell of the umbilical artery': {},\n", + " 'smooth muscle cell of the subclavian artery': {'smooth muscle cell of the internal thoracic artery': {}},\n", + " 'smooth muscle cell of the carotid artery': {},\n", + " 'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}}},\n", + " 'kidney granular cell': {},\n", + " 'enteric smooth muscle cell': {'smooth muscle cell of small intestine': {'smooth muscle fiber of duodenum': {},\n", + " 'smooth muscle fiber of jejunum': {},\n", + " 'smooth muscle fiber of ileum': {}},\n", + " 'smooth muscle cell of large intestine': {'smooth muscle cell of anorectum': {},\n", + " 'smooth muscle cell of colon': {'smooth muscle cell of cecum': {},\n", + " 'smooth muscle fiber of ascending colon': {},\n", + " 'smooth muscle fiber of transverse colon': {},\n", + " 'smooth muscle fiber of descending colon': {},\n", + " 'smooth muscle cell of sigmoid colon': {}},\n", + " 'smooth muscle cell of rectum': {},\n", + " 'smooth muscle cell of taenia coli': {},\n", + " 'smooth muscle cell of large intestine smooth muscle circular layer': {},\n", + " 'smooth muscle cell of large intestine smooth muscle longitudinal layer': {}}},\n", + " 'smooth muscle cell of bladder': {},\n", + " 'smooth muscle cell of the esophagus': {},\n", + " 'uterine smooth muscle cell': {'myometrial cell': {}},\n", + " 'smooth muscle cell of placenta': {},\n", + " 'tracheobronchial smooth muscle cell': {'bronchial smooth muscle cell': {},\n", + " 'smooth muscle cell of trachea': {},\n", + " 'bronchiolar smooth muscle cell': {}},\n", + " 'ciliary muscle cell': {},\n", + " 'smooth muscle cell of prostate': {},\n", + " 'kidney pelvis smooth muscle cell': {},\n", + " 'ureter smooth muscle cell': {}}},\n", + " 'somatic muscle cell': {'somatic muscle myotube': {'insect flight muscle cell': {}},\n", + " 'obliquely striated somatic muscle cell': {}},\n", + " 'visceral muscle cell': {'smooth muscle cell': {'smooth muscle cell neural crest derived': {},\n", + " 'sphincter associated smooth muscle cell': {'smooth muscle cell of sphincter of pupil': {}},\n", + " 'vascular associated smooth muscle cell': {'smooth muscle cell of the brain vasculature': {},\n", + " 'microcirculation associated smooth muscle cell': {'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'lymphatic vessel smooth muscle cell': {},\n", + " 'blood vessel smooth muscle cell': {'aortic smooth muscle cell': {},\n", + " 'smooth muscle cell of the umbilical vein': {},\n", + " 'smooth muscle cell of the brachiocephalic vasculature': {},\n", + " 'smooth muscle cell of the pulmonary artery': {},\n", + " 'smooth muscle cell of the coronary artery': {},\n", + " 'smooth muscle cell of the umbilical artery': {},\n", + " 'smooth muscle cell of the subclavian artery': {'smooth muscle cell of the internal thoracic artery': {}},\n", + " 'smooth muscle cell of the carotid artery': {},\n", + " 'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}}},\n", + " 'kidney granular cell': {},\n", + " 'enteric smooth muscle cell': {'smooth muscle cell of small intestine': {'smooth muscle fiber of duodenum': {},\n", + " 'smooth muscle fiber of jejunum': {},\n", + " 'smooth muscle fiber of ileum': {}},\n", + " 'smooth muscle cell of large intestine': {'smooth muscle cell of anorectum': {},\n", + " 'smooth muscle cell of colon': {'smooth muscle cell of cecum': {},\n", + " 'smooth muscle fiber of ascending colon': {},\n", + " 'smooth muscle fiber of transverse colon': {},\n", + " 'smooth muscle fiber of descending colon': {},\n", + " 'smooth muscle cell of sigmoid colon': {}},\n", + " 'smooth muscle cell of rectum': {},\n", + " 'smooth muscle cell of taenia coli': {},\n", + " 'smooth muscle cell of large intestine smooth muscle circular layer': {},\n", + " 'smooth muscle cell of large intestine smooth muscle longitudinal layer': {}}},\n", + " 'smooth muscle cell of bladder': {},\n", + " 'smooth muscle cell of the esophagus': {},\n", + " 'uterine smooth muscle cell': {'myometrial cell': {}},\n", + " 'smooth muscle cell of placenta': {},\n", + " 'tracheobronchial smooth muscle cell': {'bronchial smooth muscle cell': {},\n", + " 'smooth muscle cell of trachea': {},\n", + " 'bronchiolar smooth muscle cell': {}},\n", + " 'ciliary muscle cell': {},\n", + " 'smooth muscle cell of prostate': {},\n", + " 'kidney pelvis smooth muscle cell': {},\n", + " 'ureter smooth muscle cell': {}},\n", + " 'striated visceral muscle cell': {'transversely striated visceral muscle cell': {'internodal tract myocyte': {'myocyte of anterior internodal tract': {},\n", + " 'myocyte of atrial branch of anterior internodal tract': {},\n", + " 'myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'myocyte of middle internodal tract': {},\n", + " 'myocyte of posterior internodal tract': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'Purkinje myocyte of internodal tract': {}},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'myocyte of sinoatrial node': {'cardiac pacemaker cell of sinoatrial node': {},\n", + " 'transitional myocyte of sinoatrial node': {}},\n", + " 'myocyte of atrioventricular node': {'Purkinje myocyte of atrioventricular node': {}},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}}}}},\n", + " 'neuron': {'CNS neuron (sensu Nematoda and Protostomia)': {'Kenyon cell': {}},\n", + " 'neural crest derived neuron': {'chromaffin cell': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'interrenal chromaffin cell': {'interrenal norepinephrine type cell': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'chromaffin cell of paraganglion': {'chromaffin cell of paraaortic body': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}},\n", + " 'enteric neuron': {}},\n", + " 'interneuron': {'bipolar neuron': {'retinal bipolar neuron': {'ON-bipolar cell': {'rod bipolar cell': {'rod bipolar cell (sensu Mus)': {}},\n", + " 'ON-blue cone bipolar cell': {},\n", + " 'diffuse bipolar 4 cell': {},\n", + " 'diffuse bipolar 6 cell': {},\n", + " 'invaginating midget bipolar cell': {},\n", + " 'giant bipolar cell': {}},\n", + " 'OFF-bipolar cell': {'diffuse bipolar 1 cell': {},\n", + " 'diffuse bipolar 2 cell': {},\n", + " 'diffuse bipolar 3a cell': {},\n", + " 'diffuse bipolar 3b cell': {},\n", + " 'flat midget bipolar cell': {},\n", + " 'OFFx cell': {}},\n", + " 'cone retinal bipolar cell': {'type 1 cone bipolar cell (sensu Mus)': {},\n", + " 'type 2 cone bipolar cell (sensu Mus)': {},\n", + " 'type 3 cone bipolar cell (sensu Mus)': {'type 3a cone bipolar cell': {},\n", + " 'type 3b cone bipolar cell': {}},\n", + " 'type 4 cone bipolar cell (sensu Mus)': {},\n", + " 'type 5 cone bipolar cell (sensu Mus)': {'type 5a cone bipolar cell': {},\n", + " 'type 5b cone bipolar cell': {}},\n", + " 'type 6 cone bipolar cell (sensu Mus)': {},\n", + " 'type 7 cone bipolar cell (sensu Mus)': {},\n", + " 'type 8 cone bipolar cell (sensu Mus)': {},\n", + " 'type 9 cone bipolar cell (sensu Mus)': {}}},\n", + " 'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {}},\n", + " 'Mauthner neuron': {},\n", + " 'ganglion interneuron': {},\n", + " 'CNS interneuron': {'CNS short range interneuron': {},\n", + " 'CNS long range interneuron': {},\n", + " 'local interneuron': {},\n", + " 'spinal cord interneuron': {'Kolmer-Agduhr neuron': {},\n", + " 'dorsal horn interneuron': {},\n", + " 'spinal cord ventral column interneuron': {}},\n", + " 'cortical interneuron': {'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'hippocampal interneuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}}},\n", + " 'olfactory bulb interneuron': {'olfactory granule cell': {},\n", + " 'periglomerular cell': {},\n", + " 'mitral cell': {}},\n", + " 'cerebellum basket cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'unipolar brush cell': {}},\n", + " 'inhibitory interneuron': {'GABAergic interneuron': {'basket cell': {'cerebellum basket cell': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'Kolmer-Agduhr neuron': {},\n", + " 'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'GABAnergic interplexiform cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'Martinotti neuron': {'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'T Martinotti neuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'fan Martinotti neuron': {'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {}}},\n", + " 'GABAergic amacrine cell': {}}},\n", + " 'primary interneuron (sensu Teleostei)': {},\n", + " 'amacrine cell': {'flag amacrine cell': {'flag A amacrine cell': {},\n", + " 'flag B amacrine cell': {}},\n", + " 'AB diffuse-1 amacrine cell': {},\n", + " 'AB diffuse-2 amacrine cell': {},\n", + " 'spider amacrine cell': {},\n", + " 'monostratified amacrine cell': {},\n", + " 'broad diffuse amacrine cell': {},\n", + " 'recurving diffuse amacrine cell': {},\n", + " 'starburst amacrine cell': {},\n", + " 'diffuse multistratified amacrine cell': {},\n", + " 'AB broad diffuse-1 amacrine cell': {},\n", + " 'AB broad diffuse-2 amacrine cell': {},\n", + " 'fountain amacrine cell': {},\n", + " 'WF1 amacrine cell': {},\n", + " 'WF2 amacrine cell': {},\n", + " 'WF3-1 amacrine cell': {},\n", + " 'WF3-2 amacrine cell': {},\n", + " 'WF4 amacrine cell': {},\n", + " 'indoleamine-accumulating amacrine cell': {},\n", + " 'bistratified retinal amacrine cell': {'A2 amacrine cell': {},\n", + " 'flat bistratified amacrine cell': {},\n", + " 'A2-like amacrine cell': {},\n", + " 'diffuse bistratified amacrine cell': {},\n", + " 'DAPI-3 amacrine cell': {},\n", + " 'asymmetric bistratified amacrine cell': {},\n", + " 'wavy bistratified amacrine cell': {}},\n", + " 'narrow field retinal amacrine cell': {},\n", + " 'medium field retinal amacrine cell': {},\n", + " 'wide field retinal amacrine cell': {},\n", + " 'displaced amacrine cell': {},\n", + " 'GABAergic amacrine cell': {},\n", + " 'glycinergic amacrine cell': {}},\n", + " 'stellate interneuron': {},\n", + " 'neurogliaform cell': {'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'retina horizontal cell': {'H1 horizontal cell': {},\n", + " 'H2 horizontal cell': {}},\n", + " 'interplexiform cell': {'dopamanergic interplexiform cell': {},\n", + " 'GABAnergic interplexiform cell': {}},\n", + " 'medial ganglionic eminence derived interneuron': {'medial ganglionic eminence derived GABAergic cortical interneuron': {}},\n", + " 'caudal ganglionic eminence derived interneuron': {'caudal ganglionic eminence derived GABAergic cortical interneuron': {}},\n", + " 'bitufted neuron': {},\n", + " 'chandelier cell': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'double bouquet cell': {}},\n", + " 'polymodal neuron': {},\n", + " 'multipolar neuron': {'basket cell': {'cerebellum basket cell': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'stellate neuron': {'cerebellar stellate cell': {},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {}},\n", + " 'pyramidal neuron': {'horizontal pyramidal neuron': {},\n", + " 'inverted pyramidal neuron': {},\n", + " 'stellate pyramidal neuron': {},\n", + " 'tufted pyramidal neuron': {},\n", + " 'untufted pyramidal neuron': {},\n", + " 'amygdala pyramidal neuron': {},\n", + " 'cerebral cortex pyramidal neuron': {'hippocampal pyramidal neuron': {},\n", + " 'primary motor cortex pyramidal cell': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'Meynert cell': {},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}},\n", + " 'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}}}},\n", + " 'stellate interneuron': {},\n", + " 'neurogliaform cell': {'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'Martinotti neuron': {'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'T Martinotti neuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'fan Martinotti neuron': {'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {}}}},\n", + " 'pseudounipolar neuron': {},\n", + " 'unipolar neuron': {},\n", + " 'cholinergic neuron': {'somatomotor neuron': {'cranial somatomotor neuron': {},\n", + " 'lower motor neuron': {'spinal accessory motor neuron': {},\n", + " 'gamma motor neuron': {'dynamic gamma motor neuron': {},\n", + " 'static gamma motor neuron': {}},\n", + " 'alpha motor neuron': {},\n", + " 'anterior horn motor neuron': {},\n", + " 'beta motor neuron': {'static beta motor neuron': {},\n", + " 'dynamic beta motor neuron': {}}}},\n", + " 'sympathetic cholinergic neuron': {}},\n", + " 'peptidergic neuron': {},\n", + " 'columnar neuron': {},\n", + " 'pioneer neuron': {},\n", + " 'CNS neuron (sensu Vertebrata)': {'granule cell': {'olfactory granule cell': {},\n", + " 'cerebellar granule cell': {},\n", + " 'cortical granule cell': {'hippocampal granule cell': {'dentate gyrus granule cell': {}}},\n", + " 'Island of Calleja granule cell': {}},\n", + " 'Purkinje cell': {},\n", + " 'stellate neuron': {'cerebellar stellate cell': {},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {}},\n", + " 'neuronal brush cell': {},\n", + " 'Cajal-Retzius cell': {},\n", + " 'retinal ganglion cell': {'bistratified retinal ganglion cell': {'G3 retinal ganglion cell': {},\n", + " 'G7 retinal ganglion cell': {},\n", + " 'retinal ganglion cell D1': {},\n", + " 'retinal ganglion cell D2': {},\n", + " 'M11 retinal ganglion cell': {},\n", + " 'M12 retinal ganglion cell': {},\n", + " 'M13 retinal ganglion cell': {},\n", + " 'M14 retinal ganglion cell': {},\n", + " 'small bistratified retinal ganglion cell': {}},\n", + " 'G1 retinal ganglion cell': {},\n", + " 'G2 retinal ganglion cell': {},\n", + " 'G4 retinal ganglion cell': {'G4-ON retinal ganglion cell': {},\n", + " 'G4-OFF retinal ganglion cell': {}},\n", + " 'G5 retinal ganglion cell': {},\n", + " 'G6 retinal ganglion cell': {},\n", + " 'G8 retinal ganglion cell': {},\n", + " 'G9 retinal ganglion cell': {},\n", + " 'G10 retinal ganglion cell': {},\n", + " 'G11 retinal ganglion cell': {'G11-ON retinal ganglion cell': {},\n", + " 'G11-OFF retinal ganglion cell': {}},\n", + " 'M1 retinal ganglion cell': {},\n", + " 'M2 retinal ganglion cell': {},\n", + " 'M3 retinal ganglion cell': {'M3-ON retinal ganglion cell': {},\n", + " 'M3-OFF retinal ganglion cell': {}},\n", + " 'M4 retinal ganglion cell': {},\n", + " 'M5 retinal ganglion cell': {},\n", + " 'M6 retinal ganglion cell': {},\n", + " 'M7 retinal ganglion cell': {'M7-ON retinal ganglion cell': {},\n", + " 'M7-OFF retinal ganglion cell': {}},\n", + " 'M8 retinal ganglion cell': {},\n", + " 'M9 retinal ganglion cell': {'M9-ON retinal ganglion cell': {},\n", + " 'M9-OFF retinal ganglion cell': {}},\n", + " 'M10 retinal ganglion cell': {},\n", + " 'retinal ganglion cell B': {'retinal ganglion cell B1': {},\n", + " 'retinal ganglion cell B2': {},\n", + " 'retinal ganglion cell B3': {'retinal ganglion cell B3 outer': {},\n", + " 'retinal ganglion cell B3 inner': {}}},\n", + " 'retinal ganglion cell C': {'retinal ganglion cell C outer': {'retinal ganglion cell C4': {},\n", + " 'retinal ganglion cell C5': {},\n", + " 'retinal ganglion cell C6': {},\n", + " 'retinal ganglion cell C2 outer': {}},\n", + " 'retinal ganglion cell C inner': {'retinal ganglion cell C3': {},\n", + " 'retinal ganglion cell C1': {},\n", + " 'retinal ganglion cell C2 inner': {}}},\n", + " 'retinal ganglion cell A': {'retinal ganglion cell A1': {},\n", + " 'retinal ganglion cell A2': {'retinal ganglion cell A2 inner': {},\n", + " 'retinal ganglion cell A2 outer': {}}},\n", + " 'ON retinal ganglion cell': {'G4-ON retinal ganglion cell': {},\n", + " 'G11-ON retinal ganglion cell': {},\n", + " 'M3-ON retinal ganglion cell': {},\n", + " 'M7-ON retinal ganglion cell': {},\n", + " 'M9-ON retinal ganglion cell': {},\n", + " 'ON midget ganglion cell': {},\n", + " 'ON parasol ganglion cell': {}},\n", + " 'OFF retinal ganglion cell': {'G4-OFF retinal ganglion cell': {},\n", + " 'G11-OFF retinal ganglion cell': {},\n", + " 'M3-OFF retinal ganglion cell': {},\n", + " 'M7-OFF retinal ganglion cell': {},\n", + " 'M9-OFF retinal ganglion cell': {},\n", + " 'OFF midget ganglion cell': {},\n", + " 'OFF parasol ganglion cell': {}},\n", + " 'midget ganglion cell of retina': {'ON midget ganglion cell': {},\n", + " 'OFF midget ganglion cell': {}},\n", + " 'parasol ganglion cell of retina': {'OFF parasol ganglion cell': {},\n", + " 'ON parasol ganglion cell': {}}},\n", + " 'raphe nuclei neuron': {},\n", + " 'neuron of the dorsal spinal cord': {},\n", + " 'neuron of the ventral spinal cord': {},\n", + " 'neuron of the substantia nigra': {},\n", + " 'neuron of the forebrain': {'olfactory granule cell': {},\n", + " 'cortical granule cell': {'hippocampal granule cell': {'dentate gyrus granule cell': {}}},\n", + " 'striatum neuron': {'Island of Calleja granule cell': {}},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {}},\n", + " 'horizontal pyramidal neuron': {},\n", + " 'inverted pyramidal neuron': {},\n", + " 'stellate pyramidal neuron': {},\n", + " 'tufted pyramidal neuron': {},\n", + " 'untufted pyramidal neuron': {}},\n", + " 'sensory processing neuron': {},\n", + " 'afferent neuron': {'sensory neuron': {'neuronal receptor cell': {'pain receptor cell': {'unimodal nocireceptor': {},\n", + " 'polymodal nocireceptor': {}},\n", + " 'touch receptor cell': {},\n", + " 'gravity sensitive cell': {},\n", + " 'acceleration receptive cell': {},\n", + " 'thermoreceptor cell': {'cold sensing thermoreceptor cell': {},\n", + " 'warmth sensing thermoreceptor cell': {}},\n", + " 'olfactory receptor cell': {'ciliated olfactory receptor neuron': {},\n", + " 'microvillous olfactory receptor neuron': {},\n", + " 'crypt olfactory receptor neuron': {}},\n", + " 'photoreceptor cell': {'eye photoreceptor cell': {'R7 photoreceptor cell': {},\n", + " 'camera-type eye photoreceptor cell': {'retinal cone cell': {'L cone cell': {},\n", + " 'M cone cell': {'510 nm-cone': {}},\n", + " 'S cone cell': {},\n", + " 'UV cone cell': {'360 nm-cone': {}}},\n", + " 'retinal rod cell': {}},\n", + " 'compound eye photoreceptor cell': {'R1 photoreceptor cell': {},\n", + " 'R2 photoreceptor cell': {},\n", + " 'R3 photoreceptor cell': {},\n", + " 'R4 photoreceptor cell': {},\n", + " 'R5 photoreceptor cell': {},\n", + " 'R6 photoreceptor cell': {},\n", + " 'R8 photoreceptor cell': {}}},\n", + " 'visible light photoreceptor cell': {'photopic photoreceptor cell': {'blue sensitive photoreceptor cell': {},\n", + " 'green sensitive photoreceptor cell': {},\n", + " 'red sensitive photoreceptor cell': {}},\n", + " 'R1 photoreceptor cell': {},\n", + " 'R2 photoreceptor cell': {},\n", + " 'R3 photoreceptor cell': {},\n", + " 'R4 photoreceptor cell': {},\n", + " 'R5 photoreceptor cell': {},\n", + " 'R6 photoreceptor cell': {},\n", + " 'R8 photoreceptor cell': {}},\n", + " 'scotopic photoreceptor cell': {},\n", + " 'UV sensitive photoreceptor cell': {'R7 photoreceptor cell': {}}},\n", + " 'Rohon-Beard neuron': {},\n", + " 'humidity receptor cell': {},\n", + " 'neuromast hair cell': {'anterior lateral line neuromast hair cell': {},\n", + " 'posterior lateral line neuromast hair cell': {}},\n", + " 'ear hair cell': {'vestibular hair cell': {'type II vestibular sensory cell': {'type 2 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}},\n", + " 'type I vestibular sensory cell': {'type 1 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}}},\n", + " 'tether cell': {},\n", + " 'macular hair cell': {},\n", + " 'cochlea auditory hair cell': {'cochlear inner hair cell': {},\n", + " 'cochlear outer hair cell': {}}},\n", + " 'stretch receptor cell': {'pressoreceptor cell': {}},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'sensory neuron of dorsal root ganglion': {},\n", + " 'trigeminal sensory neuron': {}},\n", + " 'mechanoreceptor cell': {'touch receptor cell': {},\n", + " 'gravity sensitive cell': {},\n", + " 'slowly adapting mechanoreceptor cell': {},\n", + " 'sensory hair cell': {'auditory hair cell': {'macular hair cell': {},\n", + " 'cochlea auditory hair cell': {'cochlear inner hair cell': {},\n", + " 'cochlear outer hair cell': {}}},\n", + " 'neuromast hair cell': {'anterior lateral line neuromast hair cell': {},\n", + " 'posterior lateral line neuromast hair cell': {}},\n", + " 'ear hair cell': {'vestibular hair cell': {'type II vestibular sensory cell': {'type 2 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}},\n", + " 'type I vestibular sensory cell': {'type 1 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}}},\n", + " 'tether cell': {},\n", + " 'macular hair cell': {},\n", + " 'cochlea auditory hair cell': {'cochlear inner hair cell': {},\n", + " 'cochlear outer hair cell': {}}}},\n", + " 'cutaneous/subcutaneous mechanoreceptor cell': {'hair-tylotrich neuron': {},\n", + " 'hair-down neuron': {}}},\n", + " 'extramedullary cell': {},\n", + " 'primary sensory neuron (sensu Teleostei)': {'Rohon-Beard neuron': {}},\n", + " 'olfactory bulb interneuron': {'olfactory granule cell': {},\n", + " 'periglomerular cell': {},\n", + " 'mitral cell': {}},\n", + " 'vomeronasal sensory neuron': {},\n", + " 'peripheral sensory neuron': {'sensory neuron of spinal nerve': {}},\n", + " 'vestibular afferent neuron': {'bouton vestibular afferent neuron': {},\n", + " 'calyx vestibular afferent neuron': {}}}},\n", + " 'efferent neuron': {'motor neuron': {'primary motor neuron (sensu Teleostei)': {'CAP motoneuron': {}},\n", + " 'secondary motor neuron (sensu Teleostei)': {},\n", + " 'somatomotor neuron': {'cranial somatomotor neuron': {},\n", + " 'lower motor neuron': {'spinal accessory motor neuron': {},\n", + " 'gamma motor neuron': {'dynamic gamma motor neuron': {},\n", + " 'static gamma motor neuron': {}},\n", + " 'alpha motor neuron': {},\n", + " 'anterior horn motor neuron': {},\n", + " 'beta motor neuron': {'static beta motor neuron': {},\n", + " 'dynamic beta motor neuron': {}}}},\n", + " 'visceromotor neuron': {'cranial visceromotor neuron': {}},\n", + " 'inhibitory motor neuron': {},\n", + " 'upper motor neuron': {},\n", + " 'spinal cord motor neuron': {'lateral motor column neuron': {},\n", + " 'anterior horn motor neuron': {}},\n", + " 'cranial motor neuron': {'branchiomotor neuron': {},\n", + " 'cranial somatomotor neuron': {},\n", + " 'cranial visceromotor neuron': {}},\n", + " 'brainstem motor neuron': {},\n", + " 'trigeminal motor neuron': {}},\n", + " 'Purkinje cell': {},\n", + " 'neuroendocrine cell': {'amine precursor uptake and decarboxylation cell': {'chromaffin cell': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'interrenal chromaffin cell': {'interrenal norepinephrine type cell': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'chromaffin cell of paraganglion': {'chromaffin cell of paraaortic body': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}}},\n", + " 'paraganglial type 1 cell': {},\n", + " 'Feyrter cell': {'dense-core granulated cell of epithelium of trachea': {}},\n", + " 'magnocellular neurosecretory cell': {'oxytocin-secreting magnocellular cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'gonadotropin-releasing hormone neuron': {},\n", + " 'prostate neuroendocrine cell': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'parvocellular neurosecretory cell': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'eurydendroid cell': {}},\n", + " 'nitrergic neuron': {},\n", + " 'primary neuron (sensu Teleostei)': {'primary sensory neuron (sensu Teleostei)': {'Rohon-Beard neuron': {}},\n", + " 'primary motor neuron (sensu Teleostei)': {'CAP motoneuron': {}},\n", + " 'primary interneuron (sensu Teleostei)': {}},\n", + " 'secondary neuron (sensu Teleostei)': {'secondary motor neuron (sensu Teleostei)': {}},\n", + " 'GABAergic neuron': {'GABAergic interneuron': {'basket cell': {'cerebellum basket cell': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'Kolmer-Agduhr neuron': {},\n", + " 'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'GABAnergic interplexiform cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'Martinotti neuron': {'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'T Martinotti neuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'fan Martinotti neuron': {'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {}}},\n", + " 'GABAergic amacrine cell': {}},\n", + " 'medium spiny neuron': {'direct pathway medium spiny neuron': {'matrix D1 medium spiny neuron': {},\n", + " 'striosomal D1 medium spiny neuron': {}},\n", + " 'indirect pathway medium spiny neuron': {'matrix D2 medium spiny neuron': {},\n", + " 'striosomal D2 medium spiny neuron': {}},\n", + " 'D1/D2-hybrid medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D1 medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D2 medium spiny neuron': {},\n", + " 'RXFP1-positive interface island D1-medium spiny neuron': {},\n", + " 'eccentric medium spiny neuron': {}},\n", + " 'meis2 expressing cortical GABAergic cell': {},\n", + " 'cartwheel cell': {}},\n", + " 'commissural neuron': {},\n", + " 'glutamatergic neuron': {'retinal bipolar neuron': {'ON-bipolar cell': {'rod bipolar cell': {'rod bipolar cell (sensu Mus)': {}},\n", + " 'ON-blue cone bipolar cell': {},\n", + " 'diffuse bipolar 4 cell': {},\n", + " 'diffuse bipolar 6 cell': {},\n", + " 'invaginating midget bipolar cell': {},\n", + " 'giant bipolar cell': {}},\n", + " 'OFF-bipolar cell': {'diffuse bipolar 1 cell': {},\n", + " 'diffuse bipolar 2 cell': {},\n", + " 'diffuse bipolar 3a cell': {},\n", + " 'diffuse bipolar 3b cell': {},\n", + " 'flat midget bipolar cell': {},\n", + " 'OFFx cell': {}},\n", + " 'cone retinal bipolar cell': {'type 1 cone bipolar cell (sensu Mus)': {},\n", + " 'type 2 cone bipolar cell (sensu Mus)': {},\n", + " 'type 3 cone bipolar cell (sensu Mus)': {'type 3a cone bipolar cell': {},\n", + " 'type 3b cone bipolar cell': {}},\n", + " 'type 4 cone bipolar cell (sensu Mus)': {},\n", + " 'type 5 cone bipolar cell (sensu Mus)': {'type 5a cone bipolar cell': {},\n", + " 'type 5b cone bipolar cell': {}},\n", + " 'type 6 cone bipolar cell (sensu Mus)': {},\n", + " 'type 7 cone bipolar cell (sensu Mus)': {},\n", + " 'type 8 cone bipolar cell (sensu Mus)': {},\n", + " 'type 9 cone bipolar cell (sensu Mus)': {}}},\n", + " 'upper motor neuron': {},\n", + " 'cerebellum glutamatergic neuron': {'cerebellar granule cell': {}},\n", + " 'intratelencephalic-projecting glutamatergic cortical neuron': {'L2/3-6 intratelencephalic projecting glutamatergic cortical neuron': {'L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}}}},\n", + " 'extratelencephalic-projecting glutamatergic cortical neuron': {'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'von Economo neuron': {}},\n", + " 'near-projecting glutamatergic cortical neuron': {'L5/6 near-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'corticothalamic-projecting glutamatergic cortical neuron': {'L6 corticothalamic-projecting glutamatergic cortical neuron': {'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}}},\n", + " 'L6b glutamatergic cortical neuron': {'L6b subplate glutamatergic neuron of the primary motor cortex': {}},\n", + " 'amygdala excitatory neuron': {},\n", + " 'thalamic excitatory neuron': {},\n", + " 'unipolar brush cell': {}},\n", + " 'serotonergic neuron': {},\n", + " 'bistratified cell': {'bistratified retinal ganglion cell': {'G3 retinal ganglion cell': {},\n", + " 'G7 retinal ganglion cell': {},\n", + " 'retinal ganglion cell D1': {},\n", + " 'retinal ganglion cell D2': {},\n", + " 'M11 retinal ganglion cell': {},\n", + " 'M12 retinal ganglion cell': {},\n", + " 'M13 retinal ganglion cell': {},\n", + " 'M14 retinal ganglion cell': {},\n", + " 'small bistratified retinal ganglion cell': {}},\n", + " 'bistratified retinal amacrine cell': {'A2 amacrine cell': {},\n", + " 'flat bistratified amacrine cell': {},\n", + " 'A2-like amacrine cell': {},\n", + " 'diffuse bistratified amacrine cell': {},\n", + " 'DAPI-3 amacrine cell': {},\n", + " 'asymmetric bistratified amacrine cell': {},\n", + " 'wavy bistratified amacrine cell': {}}},\n", + " 'visual system neuron': {'retinal bipolar neuron': {'ON-bipolar cell': {'rod bipolar cell': {'rod bipolar cell (sensu Mus)': {}},\n", + " 'ON-blue cone bipolar cell': {},\n", + " 'diffuse bipolar 4 cell': {},\n", + " 'diffuse bipolar 6 cell': {},\n", + " 'invaginating midget bipolar cell': {},\n", + " 'giant bipolar cell': {}},\n", + " 'OFF-bipolar cell': {'diffuse bipolar 1 cell': {},\n", + " 'diffuse bipolar 2 cell': {},\n", + " 'diffuse bipolar 3a cell': {},\n", + " 'diffuse bipolar 3b cell': {},\n", + " 'flat midget bipolar cell': {},\n", + " 'OFFx cell': {}},\n", + " 'cone retinal bipolar cell': {'type 1 cone bipolar cell (sensu Mus)': {},\n", + " 'type 2 cone bipolar cell (sensu Mus)': {},\n", + " 'type 3 cone bipolar cell (sensu Mus)': {'type 3a cone bipolar cell': {},\n", + " 'type 3b cone bipolar cell': {}},\n", + " 'type 4 cone bipolar cell (sensu Mus)': {},\n", + " 'type 5 cone bipolar cell (sensu Mus)': {'type 5a cone bipolar cell': {},\n", + " 'type 5b cone bipolar cell': {}},\n", + " 'type 6 cone bipolar cell (sensu Mus)': {},\n", + " 'type 7 cone bipolar cell (sensu Mus)': {},\n", + " 'type 8 cone bipolar cell (sensu Mus)': {},\n", + " 'type 9 cone bipolar cell (sensu Mus)': {}}}},\n", + " 'cardiac neuron': {},\n", + " 'galanergic neuron': {},\n", + " 'hypocretin-secreting neuron': {},\n", + " 'histaminergic neuron': {},\n", + " 'spiral ganglion neuron': {'type 1 spiral ganglion neuron': {},\n", + " 'type 2 spiral ganglion neuron': {}},\n", + " 'olfactory bulb tufted cell': {},\n", + " 'glycinergic neuron': {'cartwheel cell': {},\n", + " 'glycinergic amacrine cell': {}},\n", + " 'central nervous system neuron': {'CNS interneuron': {'CNS short range interneuron': {},\n", + " 'CNS long range interneuron': {},\n", + " 'local interneuron': {},\n", + " 'spinal cord interneuron': {'Kolmer-Agduhr neuron': {},\n", + " 'dorsal horn interneuron': {},\n", + " 'spinal cord ventral column interneuron': {}},\n", + " 'cortical interneuron': {'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'hippocampal interneuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}}},\n", + " 'olfactory bulb interneuron': {'olfactory granule cell': {},\n", + " 'periglomerular cell': {},\n", + " 'mitral cell': {}},\n", + " 'cerebellum basket cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'unipolar brush cell': {}},\n", + " 'Cajal-Retzius cell': {},\n", + " 'raphe nuclei neuron': {},\n", + " 'neuron of the dorsal spinal cord': {},\n", + " 'neuron of the ventral spinal cord': {},\n", + " 'neuron of the substantia nigra': {},\n", + " 'monostratified cell': {},\n", + " 'cranial visceromotor neuron': {},\n", + " 'cerebral cortex neuron': {'cortical granule cell': {'hippocampal granule cell': {'dentate gyrus granule cell': {}}},\n", + " 'hippocampal neuron': {'hippocampal granule cell': {'dentate gyrus granule cell': {}},\n", + " 'hippocampal interneuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'hippocampal pyramidal neuron': {},\n", + " 'hippocampal CA1-3 neuron': {},\n", + " 'dentate gyrus neuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " 'dentate gyrus granule cell': {},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {},\n", + " 'dentate gyrus kisspeptin neuron': {}}},\n", + " 'cortical interneuron': {'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'hippocampal interneuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}}},\n", + " 'intratelencephalic-projecting glutamatergic cortical neuron': {'L2/3-6 intratelencephalic projecting glutamatergic cortical neuron': {'L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}}}},\n", + " 'extratelencephalic-projecting glutamatergic cortical neuron': {'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'von Economo neuron': {}},\n", + " 'near-projecting glutamatergic cortical neuron': {'L5/6 near-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'corticothalamic-projecting glutamatergic cortical neuron': {'L6 corticothalamic-projecting glutamatergic cortical neuron': {'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}}},\n", + " 'L6b glutamatergic cortical neuron': {'L6b subplate glutamatergic neuron of the primary motor cortex': {}},\n", + " 'meis2 expressing cortical GABAergic cell': {},\n", + " 'cerebral cortex pyramidal neuron': {'hippocampal pyramidal neuron': {},\n", + " 'primary motor cortex pyramidal cell': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'Meynert cell': {},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}},\n", + " 'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}}}},\n", + " 'spinal cord motor neuron': {'lateral motor column neuron': {},\n", + " 'anterior horn motor neuron': {}},\n", + " 'magnocellular neurosecretory cell': {'oxytocin-secreting magnocellular cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'neuron of the forebrain': {'olfactory granule cell': {},\n", + " 'cortical granule cell': {'hippocampal granule cell': {'dentate gyrus granule cell': {}}},\n", + " 'striatum neuron': {'Island of Calleja granule cell': {}},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {}},\n", + " 'retrotrapezoid nucleus neuron': {},\n", + " 'medium spiny neuron': {'direct pathway medium spiny neuron': {'matrix D1 medium spiny neuron': {},\n", + " 'striosomal D1 medium spiny neuron': {}},\n", + " 'indirect pathway medium spiny neuron': {'matrix D2 medium spiny neuron': {},\n", + " 'striosomal D2 medium spiny neuron': {}},\n", + " 'D1/D2-hybrid medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D1 medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D2 medium spiny neuron': {},\n", + " 'RXFP1-positive interface island D1-medium spiny neuron': {},\n", + " 'eccentric medium spiny neuron': {}},\n", + " 'lateral ventricle neuron': {},\n", + " 'cerebellar neuron': {'Purkinje cell': {},\n", + " 'cerebellar stellate cell': {},\n", + " 'cerebellum basket cell': {},\n", + " 'cerebellum glutamatergic neuron': {'cerebellar granule cell': {}},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}}},\n", + " 'spinal cord medial motor column neuron': {},\n", + " 'brainstem motor neuron': {},\n", + " 'midbrain dopaminergic neuron': {},\n", + " 'amygdala excitatory neuron': {},\n", + " 'thalamic excitatory neuron': {},\n", + " 'mammillary body neuron': {},\n", + " 'reticulospinal neuron': {},\n", + " 'amygdala pyramidal neuron': {},\n", + " 'hypothalamus kisspeptin neuron': {'KNDy neuron': {'arcuate nucleus of hypothalamus KNDy neuron': {},\n", + " 'rostral periventricular region of the third ventricle KNDy neuron': {}}},\n", + " 'octopus cell of the mammalian cochlear nucleus': {},\n", + " 'cartwheel cell': {},\n", + " 'bushy cell': {'spherical bushy cell': {}, 'globular bushy cell': {}},\n", + " 'koniocellular cell': {}},\n", + " 'lateral line ganglion neuron': {'anterior lateral line ganglion neuron': {},\n", + " 'posterior lateral line ganglion neuron': {}},\n", + " 'peripheral nervous system neuron': {'autonomic neuron': {'enteric neuron': {},\n", + " 'parasympathetic neuron': {},\n", + " 'sympathetic neuron': {'sympathetic noradrenergic neuron': {},\n", + " 'sympathetic cholinergic neuron': {}}},\n", + " 'kidney nerve cell': {},\n", + " 'peripheral sensory neuron': {'sensory neuron of spinal nerve': {}}},\n", + " 'hippocampal CA4 neuron': {},\n", + " 'midbrain-derived inhibitory neuron': {},\n", + " 'kisspeptin neuron': {'hypothalamus kisspeptin neuron': {'KNDy neuron': {'arcuate nucleus of hypothalamus KNDy neuron': {},\n", + " 'rostral periventricular region of the third ventricle KNDy neuron': {}}},\n", + " 'dentate gyrus kisspeptin neuron': {}},\n", + " 'somatosensory neuron': {'touch receptor cell': {},\n", + " 'Rohon-Beard neuron': {},\n", + " 'sensory neuron of dorsal root ganglion': {},\n", + " 'trigeminal sensory neuron': {}},\n", + " 'trigeminal neuron': {'trigeminal sensory neuron': {},\n", + " 'trigeminal motor neuron': {}},\n", + " 'catecholaminergic neuron': {'adrenergic neuron': {},\n", + " 'dopaminergic neuron': {'dopamanergic interplexiform cell': {},\n", + " 'midbrain dopaminergic neuron': {}},\n", + " 'noradrenergic neuron': {'sympathetic noradrenergic neuron': {}}}}},\n", + " 'electrically signaling cell': {'neuron': {'CNS neuron (sensu Nematoda and Protostomia)': {'Kenyon cell': {}},\n", + " 'neural crest derived neuron': {'chromaffin cell': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'interrenal chromaffin cell': {'interrenal norepinephrine type cell': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'chromaffin cell of paraganglion': {'chromaffin cell of paraaortic body': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}},\n", + " 'enteric neuron': {}},\n", + " 'interneuron': {'bipolar neuron': {'retinal bipolar neuron': {'ON-bipolar cell': {'rod bipolar cell': {'rod bipolar cell (sensu Mus)': {}},\n", + " 'ON-blue cone bipolar cell': {},\n", + " 'diffuse bipolar 4 cell': {},\n", + " 'diffuse bipolar 6 cell': {},\n", + " 'invaginating midget bipolar cell': {},\n", + " 'giant bipolar cell': {}},\n", + " 'OFF-bipolar cell': {'diffuse bipolar 1 cell': {},\n", + " 'diffuse bipolar 2 cell': {},\n", + " 'diffuse bipolar 3a cell': {},\n", + " 'diffuse bipolar 3b cell': {},\n", + " 'flat midget bipolar cell': {},\n", + " 'OFFx cell': {}},\n", + " 'cone retinal bipolar cell': {'type 1 cone bipolar cell (sensu Mus)': {},\n", + " 'type 2 cone bipolar cell (sensu Mus)': {},\n", + " 'type 3 cone bipolar cell (sensu Mus)': {'type 3a cone bipolar cell': {},\n", + " 'type 3b cone bipolar cell': {}},\n", + " 'type 4 cone bipolar cell (sensu Mus)': {},\n", + " 'type 5 cone bipolar cell (sensu Mus)': {'type 5a cone bipolar cell': {},\n", + " 'type 5b cone bipolar cell': {}},\n", + " 'type 6 cone bipolar cell (sensu Mus)': {},\n", + " 'type 7 cone bipolar cell (sensu Mus)': {},\n", + " 'type 8 cone bipolar cell (sensu Mus)': {},\n", + " 'type 9 cone bipolar cell (sensu Mus)': {}}},\n", + " 'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {}},\n", + " 'Mauthner neuron': {},\n", + " 'ganglion interneuron': {},\n", + " 'CNS interneuron': {'CNS short range interneuron': {},\n", + " 'CNS long range interneuron': {},\n", + " 'local interneuron': {},\n", + " 'spinal cord interneuron': {'Kolmer-Agduhr neuron': {},\n", + " 'dorsal horn interneuron': {},\n", + " 'spinal cord ventral column interneuron': {}},\n", + " 'cortical interneuron': {'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'hippocampal interneuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}}},\n", + " 'olfactory bulb interneuron': {'olfactory granule cell': {},\n", + " 'periglomerular cell': {},\n", + " 'mitral cell': {}},\n", + " 'cerebellum basket cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'unipolar brush cell': {}},\n", + " 'inhibitory interneuron': {'GABAergic interneuron': {'basket cell': {'cerebellum basket cell': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'Kolmer-Agduhr neuron': {},\n", + " 'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'GABAnergic interplexiform cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'Martinotti neuron': {'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'T Martinotti neuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'fan Martinotti neuron': {'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {}}},\n", + " 'GABAergic amacrine cell': {}}},\n", + " 'primary interneuron (sensu Teleostei)': {},\n", + " 'amacrine cell': {'flag amacrine cell': {'flag A amacrine cell': {},\n", + " 'flag B amacrine cell': {}},\n", + " 'AB diffuse-1 amacrine cell': {},\n", + " 'AB diffuse-2 amacrine cell': {},\n", + " 'spider amacrine cell': {},\n", + " 'monostratified amacrine cell': {},\n", + " 'broad diffuse amacrine cell': {},\n", + " 'recurving diffuse amacrine cell': {},\n", + " 'starburst amacrine cell': {},\n", + " 'diffuse multistratified amacrine cell': {},\n", + " 'AB broad diffuse-1 amacrine cell': {},\n", + " 'AB broad diffuse-2 amacrine cell': {},\n", + " 'fountain amacrine cell': {},\n", + " 'WF1 amacrine cell': {},\n", + " 'WF2 amacrine cell': {},\n", + " 'WF3-1 amacrine cell': {},\n", + " 'WF3-2 amacrine cell': {},\n", + " 'WF4 amacrine cell': {},\n", + " 'indoleamine-accumulating amacrine cell': {},\n", + " 'bistratified retinal amacrine cell': {'A2 amacrine cell': {},\n", + " 'flat bistratified amacrine cell': {},\n", + " 'A2-like amacrine cell': {},\n", + " 'diffuse bistratified amacrine cell': {},\n", + " 'DAPI-3 amacrine cell': {},\n", + " 'asymmetric bistratified amacrine cell': {},\n", + " 'wavy bistratified amacrine cell': {}},\n", + " 'narrow field retinal amacrine cell': {},\n", + " 'medium field retinal amacrine cell': {},\n", + " 'wide field retinal amacrine cell': {},\n", + " 'displaced amacrine cell': {},\n", + " 'GABAergic amacrine cell': {},\n", + " 'glycinergic amacrine cell': {}},\n", + " 'stellate interneuron': {},\n", + " 'neurogliaform cell': {'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'retina horizontal cell': {'H1 horizontal cell': {},\n", + " 'H2 horizontal cell': {}},\n", + " 'interplexiform cell': {'dopamanergic interplexiform cell': {},\n", + " 'GABAnergic interplexiform cell': {}},\n", + " 'medial ganglionic eminence derived interneuron': {'medial ganglionic eminence derived GABAergic cortical interneuron': {}},\n", + " 'caudal ganglionic eminence derived interneuron': {'caudal ganglionic eminence derived GABAergic cortical interneuron': {}},\n", + " 'bitufted neuron': {},\n", + " 'chandelier cell': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'double bouquet cell': {}},\n", + " 'polymodal neuron': {},\n", + " 'multipolar neuron': {'basket cell': {'cerebellum basket cell': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'stellate neuron': {'cerebellar stellate cell': {},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {}},\n", + " 'pyramidal neuron': {'horizontal pyramidal neuron': {},\n", + " 'inverted pyramidal neuron': {},\n", + " 'stellate pyramidal neuron': {},\n", + " 'tufted pyramidal neuron': {},\n", + " 'untufted pyramidal neuron': {},\n", + " 'amygdala pyramidal neuron': {},\n", + " 'cerebral cortex pyramidal neuron': {'hippocampal pyramidal neuron': {},\n", + " 'primary motor cortex pyramidal cell': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'Meynert cell': {},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}},\n", + " 'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}}}},\n", + " 'stellate interneuron': {},\n", + " 'neurogliaform cell': {'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'Martinotti neuron': {'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'T Martinotti neuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'fan Martinotti neuron': {'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {}}}},\n", + " 'pseudounipolar neuron': {},\n", + " 'unipolar neuron': {},\n", + " 'cholinergic neuron': {'somatomotor neuron': {'cranial somatomotor neuron': {},\n", + " 'lower motor neuron': {'spinal accessory motor neuron': {},\n", + " 'gamma motor neuron': {'dynamic gamma motor neuron': {},\n", + " 'static gamma motor neuron': {}},\n", + " 'alpha motor neuron': {},\n", + " 'anterior horn motor neuron': {},\n", + " 'beta motor neuron': {'static beta motor neuron': {},\n", + " 'dynamic beta motor neuron': {}}}},\n", + " 'sympathetic cholinergic neuron': {}},\n", + " 'peptidergic neuron': {},\n", + " 'columnar neuron': {},\n", + " 'pioneer neuron': {},\n", + " 'CNS neuron (sensu Vertebrata)': {'granule cell': {'olfactory granule cell': {},\n", + " 'cerebellar granule cell': {},\n", + " 'cortical granule cell': {'hippocampal granule cell': {'dentate gyrus granule cell': {}}},\n", + " 'Island of Calleja granule cell': {}},\n", + " 'Purkinje cell': {},\n", + " 'stellate neuron': {'cerebellar stellate cell': {},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {}},\n", + " 'neuronal brush cell': {},\n", + " 'Cajal-Retzius cell': {},\n", + " 'retinal ganglion cell': {'bistratified retinal ganglion cell': {'G3 retinal ganglion cell': {},\n", + " 'G7 retinal ganglion cell': {},\n", + " 'retinal ganglion cell D1': {},\n", + " 'retinal ganglion cell D2': {},\n", + " 'M11 retinal ganglion cell': {},\n", + " 'M12 retinal ganglion cell': {},\n", + " 'M13 retinal ganglion cell': {},\n", + " 'M14 retinal ganglion cell': {},\n", + " 'small bistratified retinal ganglion cell': {}},\n", + " 'G1 retinal ganglion cell': {},\n", + " 'G2 retinal ganglion cell': {},\n", + " 'G4 retinal ganglion cell': {'G4-ON retinal ganglion cell': {},\n", + " 'G4-OFF retinal ganglion cell': {}},\n", + " 'G5 retinal ganglion cell': {},\n", + " 'G6 retinal ganglion cell': {},\n", + " 'G8 retinal ganglion cell': {},\n", + " 'G9 retinal ganglion cell': {},\n", + " 'G10 retinal ganglion cell': {},\n", + " 'G11 retinal ganglion cell': {'G11-ON retinal ganglion cell': {},\n", + " 'G11-OFF retinal ganglion cell': {}},\n", + " 'M1 retinal ganglion cell': {},\n", + " 'M2 retinal ganglion cell': {},\n", + " 'M3 retinal ganglion cell': {'M3-ON retinal ganglion cell': {},\n", + " 'M3-OFF retinal ganglion cell': {}},\n", + " 'M4 retinal ganglion cell': {},\n", + " 'M5 retinal ganglion cell': {},\n", + " 'M6 retinal ganglion cell': {},\n", + " 'M7 retinal ganglion cell': {'M7-ON retinal ganglion cell': {},\n", + " 'M7-OFF retinal ganglion cell': {}},\n", + " 'M8 retinal ganglion cell': {},\n", + " 'M9 retinal ganglion cell': {'M9-ON retinal ganglion cell': {},\n", + " 'M9-OFF retinal ganglion cell': {}},\n", + " 'M10 retinal ganglion cell': {},\n", + " 'retinal ganglion cell B': {'retinal ganglion cell B1': {},\n", + " 'retinal ganglion cell B2': {},\n", + " 'retinal ganglion cell B3': {'retinal ganglion cell B3 outer': {},\n", + " 'retinal ganglion cell B3 inner': {}}},\n", + " 'retinal ganglion cell C': {'retinal ganglion cell C outer': {'retinal ganglion cell C4': {},\n", + " 'retinal ganglion cell C5': {},\n", + " 'retinal ganglion cell C6': {},\n", + " 'retinal ganglion cell C2 outer': {}},\n", + " 'retinal ganglion cell C inner': {'retinal ganglion cell C3': {},\n", + " 'retinal ganglion cell C1': {},\n", + " 'retinal ganglion cell C2 inner': {}}},\n", + " 'retinal ganglion cell A': {'retinal ganglion cell A1': {},\n", + " 'retinal ganglion cell A2': {'retinal ganglion cell A2 inner': {},\n", + " 'retinal ganglion cell A2 outer': {}}},\n", + " 'ON retinal ganglion cell': {'G4-ON retinal ganglion cell': {},\n", + " 'G11-ON retinal ganglion cell': {},\n", + " 'M3-ON retinal ganglion cell': {},\n", + " 'M7-ON retinal ganglion cell': {},\n", + " 'M9-ON retinal ganglion cell': {},\n", + " 'ON midget ganglion cell': {},\n", + " 'ON parasol ganglion cell': {}},\n", + " 'OFF retinal ganglion cell': {'G4-OFF retinal ganglion cell': {},\n", + " 'G11-OFF retinal ganglion cell': {},\n", + " 'M3-OFF retinal ganglion cell': {},\n", + " 'M7-OFF retinal ganglion cell': {},\n", + " 'M9-OFF retinal ganglion cell': {},\n", + " 'OFF midget ganglion cell': {},\n", + " 'OFF parasol ganglion cell': {}},\n", + " 'midget ganglion cell of retina': {'ON midget ganglion cell': {},\n", + " 'OFF midget ganglion cell': {}},\n", + " 'parasol ganglion cell of retina': {'OFF parasol ganglion cell': {},\n", + " 'ON parasol ganglion cell': {}}},\n", + " 'raphe nuclei neuron': {},\n", + " 'neuron of the dorsal spinal cord': {},\n", + " 'neuron of the ventral spinal cord': {},\n", + " 'neuron of the substantia nigra': {},\n", + " 'neuron of the forebrain': {'olfactory granule cell': {},\n", + " 'cortical granule cell': {'hippocampal granule cell': {'dentate gyrus granule cell': {}}},\n", + " 'striatum neuron': {'Island of Calleja granule cell': {}},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {}},\n", + " 'horizontal pyramidal neuron': {},\n", + " 'inverted pyramidal neuron': {},\n", + " 'stellate pyramidal neuron': {},\n", + " 'tufted pyramidal neuron': {},\n", + " 'untufted pyramidal neuron': {}},\n", + " 'sensory processing neuron': {},\n", + " 'afferent neuron': {'sensory neuron': {'neuronal receptor cell': {'pain receptor cell': {'unimodal nocireceptor': {},\n", + " 'polymodal nocireceptor': {}},\n", + " 'touch receptor cell': {},\n", + " 'gravity sensitive cell': {},\n", + " 'acceleration receptive cell': {},\n", + " 'thermoreceptor cell': {'cold sensing thermoreceptor cell': {},\n", + " 'warmth sensing thermoreceptor cell': {}},\n", + " 'olfactory receptor cell': {'ciliated olfactory receptor neuron': {},\n", + " 'microvillous olfactory receptor neuron': {},\n", + " 'crypt olfactory receptor neuron': {}},\n", + " 'photoreceptor cell': {'eye photoreceptor cell': {'R7 photoreceptor cell': {},\n", + " 'camera-type eye photoreceptor cell': {'retinal cone cell': {'L cone cell': {},\n", + " 'M cone cell': {'510 nm-cone': {}},\n", + " 'S cone cell': {},\n", + " 'UV cone cell': {'360 nm-cone': {}}},\n", + " 'retinal rod cell': {}},\n", + " 'compound eye photoreceptor cell': {'R1 photoreceptor cell': {},\n", + " 'R2 photoreceptor cell': {},\n", + " 'R3 photoreceptor cell': {},\n", + " 'R4 photoreceptor cell': {},\n", + " 'R5 photoreceptor cell': {},\n", + " 'R6 photoreceptor cell': {},\n", + " 'R8 photoreceptor cell': {}}},\n", + " 'visible light photoreceptor cell': {'photopic photoreceptor cell': {'blue sensitive photoreceptor cell': {},\n", + " 'green sensitive photoreceptor cell': {},\n", + " 'red sensitive photoreceptor cell': {}},\n", + " 'R1 photoreceptor cell': {},\n", + " 'R2 photoreceptor cell': {},\n", + " 'R3 photoreceptor cell': {},\n", + " 'R4 photoreceptor cell': {},\n", + " 'R5 photoreceptor cell': {},\n", + " 'R6 photoreceptor cell': {},\n", + " 'R8 photoreceptor cell': {}},\n", + " 'scotopic photoreceptor cell': {},\n", + " 'UV sensitive photoreceptor cell': {'R7 photoreceptor cell': {}}},\n", + " 'Rohon-Beard neuron': {},\n", + " 'humidity receptor cell': {},\n", + " 'neuromast hair cell': {'anterior lateral line neuromast hair cell': {},\n", + " 'posterior lateral line neuromast hair cell': {}},\n", + " 'ear hair cell': {'vestibular hair cell': {'type II vestibular sensory cell': {'type 2 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}},\n", + " 'type I vestibular sensory cell': {'type 1 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}}},\n", + " 'tether cell': {},\n", + " 'macular hair cell': {},\n", + " 'cochlea auditory hair cell': {'cochlear inner hair cell': {},\n", + " 'cochlear outer hair cell': {}}},\n", + " 'stretch receptor cell': {'pressoreceptor cell': {}},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'sensory neuron of dorsal root ganglion': {},\n", + " 'trigeminal sensory neuron': {}},\n", + " 'mechanoreceptor cell': {'touch receptor cell': {},\n", + " 'gravity sensitive cell': {},\n", + " 'slowly adapting mechanoreceptor cell': {},\n", + " 'sensory hair cell': {'auditory hair cell': {'macular hair cell': {},\n", + " 'cochlea auditory hair cell': {'cochlear inner hair cell': {},\n", + " 'cochlear outer hair cell': {}}},\n", + " 'neuromast hair cell': {'anterior lateral line neuromast hair cell': {},\n", + " 'posterior lateral line neuromast hair cell': {}},\n", + " 'ear hair cell': {'vestibular hair cell': {'type II vestibular sensory cell': {'type 2 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}},\n", + " 'type I vestibular sensory cell': {'type 1 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}}},\n", + " 'tether cell': {},\n", + " 'macular hair cell': {},\n", + " 'cochlea auditory hair cell': {'cochlear inner hair cell': {},\n", + " 'cochlear outer hair cell': {}}}},\n", + " 'cutaneous/subcutaneous mechanoreceptor cell': {'hair-tylotrich neuron': {},\n", + " 'hair-down neuron': {}}},\n", + " 'extramedullary cell': {},\n", + " 'primary sensory neuron (sensu Teleostei)': {'Rohon-Beard neuron': {}},\n", + " 'olfactory bulb interneuron': {'olfactory granule cell': {},\n", + " 'periglomerular cell': {},\n", + " 'mitral cell': {}},\n", + " 'vomeronasal sensory neuron': {},\n", + " 'peripheral sensory neuron': {'sensory neuron of spinal nerve': {}},\n", + " 'vestibular afferent neuron': {'bouton vestibular afferent neuron': {},\n", + " 'calyx vestibular afferent neuron': {}}}},\n", + " 'efferent neuron': {'motor neuron': {'primary motor neuron (sensu Teleostei)': {'CAP motoneuron': {}},\n", + " 'secondary motor neuron (sensu Teleostei)': {},\n", + " 'somatomotor neuron': {'cranial somatomotor neuron': {},\n", + " 'lower motor neuron': {'spinal accessory motor neuron': {},\n", + " 'gamma motor neuron': {'dynamic gamma motor neuron': {},\n", + " 'static gamma motor neuron': {}},\n", + " 'alpha motor neuron': {},\n", + " 'anterior horn motor neuron': {},\n", + " 'beta motor neuron': {'static beta motor neuron': {},\n", + " 'dynamic beta motor neuron': {}}}},\n", + " 'visceromotor neuron': {'cranial visceromotor neuron': {}},\n", + " 'inhibitory motor neuron': {},\n", + " 'upper motor neuron': {},\n", + " 'spinal cord motor neuron': {'lateral motor column neuron': {},\n", + " 'anterior horn motor neuron': {}},\n", + " 'cranial motor neuron': {'branchiomotor neuron': {},\n", + " 'cranial somatomotor neuron': {},\n", + " 'cranial visceromotor neuron': {}},\n", + " 'brainstem motor neuron': {},\n", + " 'trigeminal motor neuron': {}},\n", + " 'Purkinje cell': {},\n", + " 'neuroendocrine cell': {'amine precursor uptake and decarboxylation cell': {'chromaffin cell': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'interrenal chromaffin cell': {'interrenal norepinephrine type cell': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'chromaffin cell of paraganglion': {'chromaffin cell of paraaortic body': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}}},\n", + " 'paraganglial type 1 cell': {},\n", + " 'Feyrter cell': {'dense-core granulated cell of epithelium of trachea': {}},\n", + " 'magnocellular neurosecretory cell': {'oxytocin-secreting magnocellular cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'gonadotropin-releasing hormone neuron': {},\n", + " 'prostate neuroendocrine cell': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'parvocellular neurosecretory cell': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'eurydendroid cell': {}},\n", + " 'nitrergic neuron': {},\n", + " 'primary neuron (sensu Teleostei)': {'primary sensory neuron (sensu Teleostei)': {'Rohon-Beard neuron': {}},\n", + " 'primary motor neuron (sensu Teleostei)': {'CAP motoneuron': {}},\n", + " 'primary interneuron (sensu Teleostei)': {}},\n", + " 'secondary neuron (sensu Teleostei)': {'secondary motor neuron (sensu Teleostei)': {}},\n", + " 'GABAergic neuron': {'GABAergic interneuron': {'basket cell': {'cerebellum basket cell': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'Kolmer-Agduhr neuron': {},\n", + " 'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'GABAnergic interplexiform cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'Martinotti neuron': {'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'T Martinotti neuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'fan Martinotti neuron': {'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {}}},\n", + " 'GABAergic amacrine cell': {}},\n", + " 'medium spiny neuron': {'direct pathway medium spiny neuron': {'matrix D1 medium spiny neuron': {},\n", + " 'striosomal D1 medium spiny neuron': {}},\n", + " 'indirect pathway medium spiny neuron': {'matrix D2 medium spiny neuron': {},\n", + " 'striosomal D2 medium spiny neuron': {}},\n", + " 'D1/D2-hybrid medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D1 medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D2 medium spiny neuron': {},\n", + " 'RXFP1-positive interface island D1-medium spiny neuron': {},\n", + " 'eccentric medium spiny neuron': {}},\n", + " 'meis2 expressing cortical GABAergic cell': {},\n", + " 'cartwheel cell': {}},\n", + " 'commissural neuron': {},\n", + " 'glutamatergic neuron': {'retinal bipolar neuron': {'ON-bipolar cell': {'rod bipolar cell': {'rod bipolar cell (sensu Mus)': {}},\n", + " 'ON-blue cone bipolar cell': {},\n", + " 'diffuse bipolar 4 cell': {},\n", + " 'diffuse bipolar 6 cell': {},\n", + " 'invaginating midget bipolar cell': {},\n", + " 'giant bipolar cell': {}},\n", + " 'OFF-bipolar cell': {'diffuse bipolar 1 cell': {},\n", + " 'diffuse bipolar 2 cell': {},\n", + " 'diffuse bipolar 3a cell': {},\n", + " 'diffuse bipolar 3b cell': {},\n", + " 'flat midget bipolar cell': {},\n", + " 'OFFx cell': {}},\n", + " 'cone retinal bipolar cell': {'type 1 cone bipolar cell (sensu Mus)': {},\n", + " 'type 2 cone bipolar cell (sensu Mus)': {},\n", + " 'type 3 cone bipolar cell (sensu Mus)': {'type 3a cone bipolar cell': {},\n", + " 'type 3b cone bipolar cell': {}},\n", + " 'type 4 cone bipolar cell (sensu Mus)': {},\n", + " 'type 5 cone bipolar cell (sensu Mus)': {'type 5a cone bipolar cell': {},\n", + " 'type 5b cone bipolar cell': {}},\n", + " 'type 6 cone bipolar cell (sensu Mus)': {},\n", + " 'type 7 cone bipolar cell (sensu Mus)': {},\n", + " 'type 8 cone bipolar cell (sensu Mus)': {},\n", + " 'type 9 cone bipolar cell (sensu Mus)': {}}},\n", + " 'upper motor neuron': {},\n", + " 'cerebellum glutamatergic neuron': {'cerebellar granule cell': {}},\n", + " 'intratelencephalic-projecting glutamatergic cortical neuron': {'L2/3-6 intratelencephalic projecting glutamatergic cortical neuron': {'L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}}}},\n", + " 'extratelencephalic-projecting glutamatergic cortical neuron': {'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'von Economo neuron': {}},\n", + " 'near-projecting glutamatergic cortical neuron': {'L5/6 near-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'corticothalamic-projecting glutamatergic cortical neuron': {'L6 corticothalamic-projecting glutamatergic cortical neuron': {'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}}},\n", + " 'L6b glutamatergic cortical neuron': {'L6b subplate glutamatergic neuron of the primary motor cortex': {}},\n", + " 'amygdala excitatory neuron': {},\n", + " 'thalamic excitatory neuron': {},\n", + " 'unipolar brush cell': {}},\n", + " 'serotonergic neuron': {},\n", + " 'bistratified cell': {'bistratified retinal ganglion cell': {'G3 retinal ganglion cell': {},\n", + " 'G7 retinal ganglion cell': {},\n", + " 'retinal ganglion cell D1': {},\n", + " 'retinal ganglion cell D2': {},\n", + " 'M11 retinal ganglion cell': {},\n", + " 'M12 retinal ganglion cell': {},\n", + " 'M13 retinal ganglion cell': {},\n", + " 'M14 retinal ganglion cell': {},\n", + " 'small bistratified retinal ganglion cell': {}},\n", + " 'bistratified retinal amacrine cell': {'A2 amacrine cell': {},\n", + " 'flat bistratified amacrine cell': {},\n", + " 'A2-like amacrine cell': {},\n", + " 'diffuse bistratified amacrine cell': {},\n", + " 'DAPI-3 amacrine cell': {},\n", + " 'asymmetric bistratified amacrine cell': {},\n", + " 'wavy bistratified amacrine cell': {}}},\n", + " 'visual system neuron': {'retinal bipolar neuron': {'ON-bipolar cell': {'rod bipolar cell': {'rod bipolar cell (sensu Mus)': {}},\n", + " 'ON-blue cone bipolar cell': {},\n", + " 'diffuse bipolar 4 cell': {},\n", + " 'diffuse bipolar 6 cell': {},\n", + " 'invaginating midget bipolar cell': {},\n", + " 'giant bipolar cell': {}},\n", + " 'OFF-bipolar cell': {'diffuse bipolar 1 cell': {},\n", + " 'diffuse bipolar 2 cell': {},\n", + " 'diffuse bipolar 3a cell': {},\n", + " 'diffuse bipolar 3b cell': {},\n", + " 'flat midget bipolar cell': {},\n", + " 'OFFx cell': {}},\n", + " 'cone retinal bipolar cell': {'type 1 cone bipolar cell (sensu Mus)': {},\n", + " 'type 2 cone bipolar cell (sensu Mus)': {},\n", + " 'type 3 cone bipolar cell (sensu Mus)': {'type 3a cone bipolar cell': {},\n", + " 'type 3b cone bipolar cell': {}},\n", + " 'type 4 cone bipolar cell (sensu Mus)': {},\n", + " 'type 5 cone bipolar cell (sensu Mus)': {'type 5a cone bipolar cell': {},\n", + " 'type 5b cone bipolar cell': {}},\n", + " 'type 6 cone bipolar cell (sensu Mus)': {},\n", + " 'type 7 cone bipolar cell (sensu Mus)': {},\n", + " 'type 8 cone bipolar cell (sensu Mus)': {},\n", + " 'type 9 cone bipolar cell (sensu Mus)': {}}}},\n", + " 'cardiac neuron': {},\n", + " 'galanergic neuron': {},\n", + " 'hypocretin-secreting neuron': {},\n", + " 'histaminergic neuron': {},\n", + " 'spiral ganglion neuron': {'type 1 spiral ganglion neuron': {},\n", + " 'type 2 spiral ganglion neuron': {}},\n", + " 'olfactory bulb tufted cell': {},\n", + " 'glycinergic neuron': {'cartwheel cell': {},\n", + " 'glycinergic amacrine cell': {}},\n", + " 'central nervous system neuron': {'CNS interneuron': {'CNS short range interneuron': {},\n", + " 'CNS long range interneuron': {},\n", + " 'local interneuron': {},\n", + " 'spinal cord interneuron': {'Kolmer-Agduhr neuron': {},\n", + " 'dorsal horn interneuron': {},\n", + " 'spinal cord ventral column interneuron': {}},\n", + " 'cortical interneuron': {'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'hippocampal interneuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}}},\n", + " 'olfactory bulb interneuron': {'olfactory granule cell': {},\n", + " 'periglomerular cell': {},\n", + " 'mitral cell': {}},\n", + " 'cerebellum basket cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'unipolar brush cell': {}},\n", + " 'Cajal-Retzius cell': {},\n", + " 'raphe nuclei neuron': {},\n", + " 'neuron of the dorsal spinal cord': {},\n", + " 'neuron of the ventral spinal cord': {},\n", + " 'neuron of the substantia nigra': {},\n", + " 'monostratified cell': {},\n", + " 'cranial visceromotor neuron': {},\n", + " 'cerebral cortex neuron': {'cortical granule cell': {'hippocampal granule cell': {'dentate gyrus granule cell': {}}},\n", + " 'hippocampal neuron': {'hippocampal granule cell': {'dentate gyrus granule cell': {}},\n", + " 'hippocampal interneuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'hippocampal pyramidal neuron': {},\n", + " 'hippocampal CA1-3 neuron': {},\n", + " 'dentate gyrus neuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " 'dentate gyrus granule cell': {},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {},\n", + " 'dentate gyrus kisspeptin neuron': {}}},\n", + " 'cortical interneuron': {'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'hippocampal interneuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}}},\n", + " 'intratelencephalic-projecting glutamatergic cortical neuron': {'L2/3-6 intratelencephalic projecting glutamatergic cortical neuron': {'L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}}}},\n", + " 'extratelencephalic-projecting glutamatergic cortical neuron': {'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'von Economo neuron': {}},\n", + " 'near-projecting glutamatergic cortical neuron': {'L5/6 near-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'corticothalamic-projecting glutamatergic cortical neuron': {'L6 corticothalamic-projecting glutamatergic cortical neuron': {'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}}},\n", + " 'L6b glutamatergic cortical neuron': {'L6b subplate glutamatergic neuron of the primary motor cortex': {}},\n", + " 'meis2 expressing cortical GABAergic cell': {},\n", + " 'cerebral cortex pyramidal neuron': {'hippocampal pyramidal neuron': {},\n", + " 'primary motor cortex pyramidal cell': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'Meynert cell': {},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}},\n", + " 'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}}}},\n", + " 'spinal cord motor neuron': {'lateral motor column neuron': {},\n", + " 'anterior horn motor neuron': {}},\n", + " 'magnocellular neurosecretory cell': {'oxytocin-secreting magnocellular cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'neuron of the forebrain': {'olfactory granule cell': {},\n", + " 'cortical granule cell': {'hippocampal granule cell': {'dentate gyrus granule cell': {}}},\n", + " 'striatum neuron': {'Island of Calleja granule cell': {}},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {}},\n", + " 'retrotrapezoid nucleus neuron': {},\n", + " 'medium spiny neuron': {'direct pathway medium spiny neuron': {'matrix D1 medium spiny neuron': {},\n", + " 'striosomal D1 medium spiny neuron': {}},\n", + " 'indirect pathway medium spiny neuron': {'matrix D2 medium spiny neuron': {},\n", + " 'striosomal D2 medium spiny neuron': {}},\n", + " 'D1/D2-hybrid medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D1 medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D2 medium spiny neuron': {},\n", + " 'RXFP1-positive interface island D1-medium spiny neuron': {},\n", + " 'eccentric medium spiny neuron': {}},\n", + " 'lateral ventricle neuron': {},\n", + " 'cerebellar neuron': {'Purkinje cell': {},\n", + " 'cerebellar stellate cell': {},\n", + " 'cerebellum basket cell': {},\n", + " 'cerebellum glutamatergic neuron': {'cerebellar granule cell': {}},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}}},\n", + " 'spinal cord medial motor column neuron': {},\n", + " 'brainstem motor neuron': {},\n", + " 'midbrain dopaminergic neuron': {},\n", + " 'amygdala excitatory neuron': {},\n", + " 'thalamic excitatory neuron': {},\n", + " 'mammillary body neuron': {},\n", + " 'reticulospinal neuron': {},\n", + " 'amygdala pyramidal neuron': {},\n", + " 'hypothalamus kisspeptin neuron': {'KNDy neuron': {'arcuate nucleus of hypothalamus KNDy neuron': {},\n", + " 'rostral periventricular region of the third ventricle KNDy neuron': {}}},\n", + " 'octopus cell of the mammalian cochlear nucleus': {},\n", + " 'cartwheel cell': {},\n", + " 'bushy cell': {'spherical bushy cell': {}, 'globular bushy cell': {}},\n", + " 'koniocellular cell': {}},\n", + " 'lateral line ganglion neuron': {'anterior lateral line ganglion neuron': {},\n", + " 'posterior lateral line ganglion neuron': {}},\n", + " 'peripheral nervous system neuron': {'autonomic neuron': {'enteric neuron': {},\n", + " 'parasympathetic neuron': {},\n", + " 'sympathetic neuron': {'sympathetic noradrenergic neuron': {},\n", + " 'sympathetic cholinergic neuron': {}}},\n", + " 'kidney nerve cell': {},\n", + " 'peripheral sensory neuron': {'sensory neuron of spinal nerve': {}}},\n", + " 'hippocampal CA4 neuron': {},\n", + " 'midbrain-derived inhibitory neuron': {},\n", + " 'kisspeptin neuron': {'hypothalamus kisspeptin neuron': {'KNDy neuron': {'arcuate nucleus of hypothalamus KNDy neuron': {},\n", + " 'rostral periventricular region of the third ventricle KNDy neuron': {}}},\n", + " 'dentate gyrus kisspeptin neuron': {}},\n", + " 'somatosensory neuron': {'touch receptor cell': {},\n", + " 'Rohon-Beard neuron': {},\n", + " 'sensory neuron of dorsal root ganglion': {},\n", + " 'trigeminal sensory neuron': {}},\n", + " 'trigeminal neuron': {'trigeminal sensory neuron': {},\n", + " 'trigeminal motor neuron': {}},\n", + " 'catecholaminergic neuron': {'adrenergic neuron': {},\n", + " 'dopaminergic neuron': {'dopamanergic interplexiform cell': {},\n", + " 'midbrain dopaminergic neuron': {}},\n", + " 'noradrenergic neuron': {'sympathetic noradrenergic neuron': {}}}}}},\n", + " 'absorptive cell': {'gut absorptive cell': {'enterocyte': {'enterocyte of epithelium of large intestine': {'enterocyte of epithelium proper of large intestine': {},\n", + " 'enterocyte of colon': {}},\n", + " 'enterocyte of appendix': {},\n", + " 'enterocyte of anorectum': {},\n", + " 'vacuolated fetal-type enterocyte': {},\n", + " 'lysosome-rich enterocyte': {},\n", + " 'enterocyte of epithelium of small intestine': {'enterocyte of epithelium of intestinal villus': {},\n", + " 'enterocyte of epithelium of crypt of Lieberkuhn of small intestine': {},\n", + " 'enterocyte of epithelium proper of small intestine': {'enterocyte of epithelium proper of duodenum': {},\n", + " 'enterocyte of epithelium proper of jejunum': {},\n", + " 'enterocyte of epithelium proper of ileum': {}}},\n", + " 'enterocyte of epithelium of duodenal gland': {}},\n", + " 'BEST4+ intestinal epithelial cell, human': {}}},\n", + " 'barrier cell': {'lining cell': {'mesothelial cell': {'littoral cell of liver': {},\n", + " 'seminiferous tubule epithelial cell': {'Sertoli cell': {},\n", + " 'peritubular myoid cell': {}},\n", + " 'mesothelial cell of small intestine': {},\n", + " 'mesothelial cell of colon': {},\n", + " 'mesothelial cell of appendix': {},\n", + " 'mesothelial cell of epicardium': {},\n", + " 'mesothelial cell of dura mater': {},\n", + " 'mesothelial cell of anterior chamber of eye': {},\n", + " 'mesothelial cell of peritoneum': {'mesothelial cell of parietal peritoneum': {},\n", + " 'mesothelial cell of visceral peritoneum': {}},\n", + " 'mesothelial cell of pleura': {'mesothelial cell of parietal pleura': {},\n", + " 'mesothelial cell of visceral pleura': {}}},\n", + " 'endothelial cell': {'gut endothelial cell': {},\n", + " 'corneal endothelial cell': {},\n", + " 'endothelial cell of vascular tree': {'blood vessel endothelial cell': {'endothelial tip cell': {},\n", + " 'vein endothelial cell': {'endothelial cell of umbilical vein': {},\n", + " 'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}},\n", + " 'arcuate vein endothelial cell': {},\n", + " 'interlobulary vein endothelial cell': {},\n", + " 'hindlimb stylopod vein endothelial cell': {},\n", + " 'vein endothelial cell of respiratory system': {}},\n", + " 'retinal blood vessel endothelial cell': {},\n", + " 'endothelial stalk cell': {},\n", + " 'cardiac blood vessel endothelial cell': {'endothelial cell of coronary artery': {}},\n", + " 'endothelial cell of arteriole': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole endothelial cell': {},\n", + " 'endothelial cell of arteriole of lymph node': {}},\n", + " 'endothelial cell of artery': {'aortic endothelial cell': {'thoracic aorta endothelial cell': {}},\n", + " 'arcuate artery endothelial cell': {},\n", + " 'interlobulary artery endothelial cell': {'kidney afferent arteriole endothelial cell': {}},\n", + " 'pulmonary artery endothelial cell': {},\n", + " 'endothelial cell of coronary artery': {},\n", + " 'umbilical artery endothelial cell': {}},\n", + " 'kidney capillary endothelial cell': {'glomerular capillary endothelial cell': {},\n", + " 'peritubular capillary endothelial cell': {'kidney outer medulla peritubular capillary cell': {},\n", + " 'kidney cortex peritubular capillary cell': {}},\n", + " 'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}}},\n", + " 'microvascular endothelial cell': {'capillary endothelial cell': {'glomerular capillary endothelial cell': {},\n", + " 'placental villus capillary endothelial cell': {},\n", + " 'pulmonary capillary endothelial cell': {'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}}},\n", + " 'dermal microvascular endothelial cell': {},\n", + " 'lung microvascular endothelial cell': {'pulmonary capillary endothelial cell': {'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}}},\n", + " 'bladder microvascular endothelial cell': {},\n", + " 'brain microvascular endothelial cell': {},\n", + " 'prostate gland microvascular endothelial cell': {},\n", + " 'ovarian microvascular endothelial cell': {},\n", + " 'mammary microvascular endothelial cell': {},\n", + " 'adipose microvascular endothelial cell': {},\n", + " 'endometrial microvascular endothelial cell': {}},\n", + " 'dermis blood vessel endothelial cell': {'dermal microvascular endothelial cell': {}}},\n", + " 'endothelial cell of lymphatic vessel': {'lymphatic endothelial cell of subcapsular sinus ceiling': {},\n", + " 'lymphatic endothelial cell of subcapsular sinus floor': {},\n", + " 'lymphatic endothelial cell of trabecula': {},\n", + " 'lymphatic endothelial cell of medulla ceiling': {},\n", + " 'dermis lymphatic vessel endothelial cell': {'dermis microvascular lymphatic vessel endothelial cell': {}}},\n", + " 'endothelial cell of venule': {'endothelial cell of high endothelial venule': {},\n", + " 'squamous endothelial cell': {}},\n", + " 'lung endothelial cell': {'lung microvascular endothelial cell': {'pulmonary capillary endothelial cell': {'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}}}}},\n", + " 'glomerular endothelial cell': {'glomerular capillary endothelial cell': {}},\n", + " 'endothelial cell of sinusoid': {'endothelial cell of venous sinus of spleen': {'endothelial cell of venous sinus of red pulp of spleen': {}},\n", + " 'endothelial cell of hepatic sinusoid': {'endothelial cell of periportal hepatic sinusoid': {},\n", + " 'endothelial cell of pericentral hepatic sinusoid': {}}},\n", + " 'circulating endothelial cell': {},\n", + " 'trabecular meshwork cell': {},\n", + " 'endothelial cell of respiratory system lymphatic vessel': {},\n", + " 'endothelial cell of placenta': {'placental villus capillary endothelial cell': {}},\n", + " 'endothelial cell of hepatic portal vein': {},\n", + " 'endothelial cell of uterus': {'endometrial microvascular endothelial cell': {}},\n", + " 'lymph node lymphatic vessel endothelial cell': {'lymphatic endothelial cell of subcapsular sinus ceiling': {},\n", + " 'lymphatic endothelial cell of subcapsular sinus floor': {},\n", + " 'lymphatic endothelial cell of trabecula': {},\n", + " 'lymphatic endothelial cell of medulla ceiling': {}},\n", + " 'cardiac endothelial cell': {'endocardial cell': {},\n", + " 'cardiac blood vessel endothelial cell': {'endothelial cell of coronary artery': {}},\n", + " 'valve endothelial cell': {}},\n", + " \"endothelial cell of Peyer's patch\": {},\n", + " 'ureter adventitial cell': {'fibrocyte of adventitia of ureter': {}},\n", + " 'colon endothelial cell': {},\n", + " 'cerebral cortex endothelial cell': {},\n", + " 'splenic endothelial cell': {'endothelial cell of venous sinus of red pulp of spleen': {}},\n", + " 'endothelial cell of venule of lymph node': {},\n", + " 'endothelial cell of efferent lymphatic vessel': {}},\n", + " 'synovial cell': {'type B synovial cell': {}, 'type A synovial cell': {}}},\n", + " 'insulating cell': {'myelinating Schwann cell': {}}},\n", + " 'motile cell': {'phagocyte': {'mature neutrophil': {'band form neutrophil': {},\n", + " 'segmented neutrophil of bone marrow': {}},\n", + " 'macrophage': {'elicited macrophage': {'suppressor macrophage': {'kidney interstitial suppressor macrophage': {}},\n", + " 'inflammatory macrophage': {'kidney interstitial inflammatory macrophage': {}},\n", + " 'alternatively activated macrophage': {'kidney interstitial alternatively activated macrophage': {}}},\n", + " 'tissue-resident macrophage': {'Kupffer cell': {},\n", + " 'peritoneal macrophage': {},\n", + " 'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'mesangial phagocyte': {},\n", + " 'thymic macrophage': {'thymic medullary macrophage': {},\n", + " 'thymic cortical macrophage': {}},\n", + " 'secondary lymphoid organ macrophage': {'lymph node macrophage': {'lymph node subcapsular sinus macrophage': {},\n", + " 'lymph node tingible body macrophage': {}},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}},\n", + " 'mucosa-associated lymphoid tissue macrophage': {'gut-associated lymphoid tissue macrophage': {'gastrointestinal tract (lamina propria) macrophage': {'gastrointestinal tract (lamina propria) macrophage of small intestine': {},\n", + " 'gastrointestinal tract (lamina propria) macrophage of large intestine': {}},\n", + " 'tonsillar macrophage': {},\n", + " \"Peyer's patch macrophage\": {}},\n", + " 'nasal and broncial associated lymphoid tissue macrophage': {}}},\n", + " 'central nervous system macrophage': {'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'meningeal macrophage': {},\n", + " 'choroid-plexus macrophage': {},\n", + " 'perivascular macrophage': {}},\n", + " 'melanophage': {},\n", + " 'pleural macrophage': {},\n", + " 'bone marrow macrophage': {},\n", + " 'adipose macrophage': {'F4/80-negative adipose macrophage': {},\n", + " 'F4/80-positive adipose macrophage': {}},\n", + " 'kidney resident macrophage': {},\n", + " 'lung interstitial macrophage': {}},\n", + " 'epithelioid macrophage': {},\n", + " 'appendix macrophage': {},\n", + " 'colon macrophage': {},\n", + " 'macrophage of medullary sinus of lymph node': {},\n", + " 'anorectum macrophage': {},\n", + " 'lung macrophage': {'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'lung interstitial macrophage': {}},\n", + " 'Hofbauer cell': {}},\n", + " 'phagocyte (sensu Vertebrata)': {'mononuclear phagocyte': {},\n", + " 'multinucleated phagocyte': {}},\n", + " 'phagocyte (sensu Nematoda and Protostomia)': {'coelomocyte': {},\n", + " 'pericardial nephrocyte': {},\n", + " 'garland cell': {}},\n", + " 'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'type A synovial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'migratory neural crest cell': {'migratory cranial neural crest cell': {},\n", + " 'migratory trunk neural crest cell': {},\n", + " 'migratory enteric neural crest cell': {},\n", + " 'migratory cardiac neural crest cell': {'cardiac mesenchymal cell': {'endocardial cushion cell': {}}}},\n", + " 'primordial germ cell': {'pole cell': {},\n", + " 'male gonocyte': {},\n", + " 'ooblast': {}},\n", + " 'amoeboid cell': {},\n", + " 'leukocyte': {'professional antigen presenting cell': {'mature eosinophil': {},\n", + " 'macrophage': {'elicited macrophage': {'suppressor macrophage': {'kidney interstitial suppressor macrophage': {}},\n", + " 'inflammatory macrophage': {'kidney interstitial inflammatory macrophage': {}},\n", + " 'alternatively activated macrophage': {'kidney interstitial alternatively activated macrophage': {}}},\n", + " 'tissue-resident macrophage': {'Kupffer cell': {},\n", + " 'peritoneal macrophage': {},\n", + " 'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'mesangial phagocyte': {},\n", + " 'thymic macrophage': {'thymic medullary macrophage': {},\n", + " 'thymic cortical macrophage': {}},\n", + " 'secondary lymphoid organ macrophage': {'lymph node macrophage': {'lymph node subcapsular sinus macrophage': {},\n", + " 'lymph node tingible body macrophage': {}},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}},\n", + " 'mucosa-associated lymphoid tissue macrophage': {'gut-associated lymphoid tissue macrophage': {'gastrointestinal tract (lamina propria) macrophage': {'gastrointestinal tract (lamina propria) macrophage of small intestine': {},\n", + " 'gastrointestinal tract (lamina propria) macrophage of large intestine': {}},\n", + " 'tonsillar macrophage': {},\n", + " \"Peyer's patch macrophage\": {}},\n", + " 'nasal and broncial associated lymphoid tissue macrophage': {}}},\n", + " 'central nervous system macrophage': {'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'meningeal macrophage': {},\n", + " 'choroid-plexus macrophage': {},\n", + " 'perivascular macrophage': {}},\n", + " 'melanophage': {},\n", + " 'pleural macrophage': {},\n", + " 'bone marrow macrophage': {},\n", + " 'adipose macrophage': {'F4/80-negative adipose macrophage': {},\n", + " 'F4/80-positive adipose macrophage': {}},\n", + " 'kidney resident macrophage': {},\n", + " 'lung interstitial macrophage': {}},\n", + " 'epithelioid macrophage': {},\n", + " 'appendix macrophage': {},\n", + " 'colon macrophage': {},\n", + " 'macrophage of medullary sinus of lymph node': {},\n", + " 'anorectum macrophage': {},\n", + " 'lung macrophage': {'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'lung interstitial macrophage': {}},\n", + " 'Hofbauer cell': {}},\n", + " 'dendritic cell': {'plasmacytoid dendritic cell': {'thymic plasmacytoid dendritic cell': {},\n", + " 'CD11c-low plasmacytoid dendritic cell': {'immature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-negative plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-positive plasmacytoid dendritic cell': {}},\n", + " 'CD11c-negative plasmacytoid dendritic cell': {'immature CD11c-negative plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-negative plasmacytoid dendritic cell': {}},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {}},\n", + " 'conventional dendritic cell': {'Langerhans cell': {'CD1a-positive Langerhans cell': {'immature CD1a-positive Langerhans cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {}},\n", + " 'CD8_alpha-low Langerhans cell': {'immature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {}},\n", + " 'epidermal Langerhans cell': {}},\n", + " 'myeloid dendritic cell': {'myeloid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {},\n", + " 'CD1c-positive myeloid dendritic cell': {},\n", + " 'CD16-positive myeloid dendritic cell': {'immature CD16-positive myeloid dendritic cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'monocyte-derived dendritic cell': {}},\n", + " 'immature conventional dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'immature interstitial dendritic cell': {},\n", + " 'immature CD1a-positive Langerhans cell': {},\n", + " 'immature CD8_alpha-low Langerhans cell': {},\n", + " 'immature CD16-positive myeloid dendritic cell': {}},\n", + " 'mature conventional dendritic cell': {'mature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'thymic conventional dendritic cell': {'CD8alpha-positive thymic conventional dendritic cell': {},\n", + " 'CD8alpha-negative thymic conventional dendritic cell': {}},\n", + " 'CD8_alpha-negative CD11b-negative dendritic cell': {'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-negative dendritic cell': {}},\n", + " 'CD8_alpha-positive CD11b-negative dendritic cell': {'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {}},\n", + " 'CD103-positive dendritic cell': {'langerin-positive dermal dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {}},\n", + " 'adipose dendritic cell': {'SIRPa-positive adipose dendritic cell': {},\n", + " 'SIRPa-negative adipose dendritic cell': {}},\n", + " 'CD11b-positive dendritic cell': {'CD4-positive CD11b-positive dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {}},\n", + " 'dermal dendritic cell': {'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'langerin-positive dermal dendritic cell': {},\n", + " 'langerin-negative dermal dendritic cell': {},\n", + " 'CD14-positive dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD14-positive dermal dendritic cell': {}},\n", + " 'CD1a-positive dermal dendritic cell': {'immature CD1a-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}}},\n", + " 'interstitial dendritic cell': {'immature interstitial dendritic cell': {},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'kidney resident dendritic cell': {}},\n", + " 'Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell': {'liver CD103-negative dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {},\n", + " 'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}},\n", + " 'epidermal Langerhans cell': {},\n", + " 'small intestine serosal dendritic cell': {}},\n", + " 'langerin-positive lymph node dendritic cell': {'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {}},\n", + " 'langerin-negative, CD103-negative lymph node dendritic cell': {'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}}},\n", + " 'dendritic cell, human': {'myeloid dendritic cell, human': {},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'Axl+ dendritic cell, human': {}},\n", + " 'dendritic cell of appendix': {},\n", + " 'liver dendritic cell': {},\n", + " 'lung migratory dendritic cell': {}},\n", + " 'mature B cell': {'memory B cell': {'unswitched memory B cell': {'CD38-negative unswitched memory B cell': {'B220-positive CD38-negative unswitched memory B cell': {'B220-low CD38-negative unswitched memory B cell': {}}},\n", + " 'CD38-positive unswitched memory B cell': {'B220-positive CD38-positive unswitched memory B cell': {'B220-low CD38-positive unswitched memory B cell': {}}}},\n", + " 'class switched memory B cell': {'IgE memory B cell': {},\n", + " 'IgA memory B cell': {},\n", + " 'IgG memory B cell': {'CD38-positive IgG memory B cell': {'IgD-positive CD38-positive IgG memory B cell': {},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {}},\n", + " 'CD38-negative IgG memory B cell': {}},\n", + " 'IgG-negative class switched memory B cell': {'CD38-negative IgG-negative class switched memory B cell': {'CD24-positive CD38-negative IgG-negative class switched memory B cell': {},\n", + " 'CD24-negative CD38-negative IgG-negative class switched memory B cell': {}},\n", + " 'CD38-positive IgG-negative class switched memory B cell': {'B220-positive CD38-positive IgG-negative class switched memory B cell': {'B220-low CD38-positive IgG-negative class switched memory B cell': {}}}}},\n", + " 'IgD-negative memory B cell': {'Bm5 B cell': {},\n", + " 'IgM memory B cell': {},\n", + " 'double negative memory B cell': {'IgG-positive double negative memory B cell': {},\n", + " 'IgG-negative double negative memory B cell': {}},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {},\n", + " 'CD38-negative IgG memory B cell': {}}},\n", + " 'naive B cell': {'CD38-positive naive B cell': {'B220-positive CD38-positive naive B cell': {'B220-low CD38-positive naive B cell': {}}},\n", + " 'CD38-negative naive B cell': {}},\n", + " 'B-1 B cell': {'B-1a B cell': {}, 'B-1b B cell': {}},\n", + " 'B-2 B cell': {'follicular B cell': {'Bm1 B cell': {}, 'Bm2 B cell': {}},\n", + " 'fraction F mature B cell': {'Bm1 B cell': {}},\n", + " \"Peyer's patch B cell\": {}},\n", + " 'germinal center B cell': {'Bm3-delta B cell': {},\n", + " \"Bm2' B cell\": {},\n", + " 'Bm3 B cell': {},\n", + " 'Bm4 B cell': {},\n", + " 'centrocyte': {},\n", + " 'centroblast': {},\n", + " 'tonsil germinal center B cell': {}},\n", + " 'marginal zone B cell of spleen': {},\n", + " 'Be cell': {'Be1 Cell': {}, 'Be2 cell': {}},\n", + " 'regulatory B cell': {},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}},\n", + " 'marginal zone B cell of lymph node': {}}},\n", + " 'myeloid leukocyte': {'osteoclast': {'odontoclast': {'multinuclear odontoclast': {},\n", + " 'mononuclear odontoclast': {}},\n", + " 'mononuclear osteoclast': {'mononuclear odontoclast': {}},\n", + " 'multinuclear osteoclast': {'multinuclear odontoclast': {}}},\n", + " 'granulocyte': {'basophil': {'mature basophil': {},\n", + " 'immature basophil': {'basophilic myelocyte': {},\n", + " 'basophilic metamyelocyte': {},\n", + " 'band form basophil': {}}},\n", + " 'eosinophil': {'mature eosinophil': {},\n", + " 'immature eosinophil': {'eosinophilic myelocyte': {},\n", + " 'eosinophilic metamyelocyte': {},\n", + " 'band form eosinophil': {'lung parenchyma resident eosinophil': {}}}},\n", + " 'neutrophil': {'mature neutrophil': {'band form neutrophil': {},\n", + " 'segmented neutrophil of bone marrow': {}},\n", + " 'immature neutrophil': {'neutrophilic myelocyte': {},\n", + " 'neutrophilic metamyelocyte': {}}}},\n", + " 'mast cell': {'connective tissue type mast cell': {},\n", + " 'mucosal type mast cell': {}},\n", + " 'macrophage': {'elicited macrophage': {'suppressor macrophage': {'kidney interstitial suppressor macrophage': {}},\n", + " 'inflammatory macrophage': {'kidney interstitial inflammatory macrophage': {}},\n", + " 'alternatively activated macrophage': {'kidney interstitial alternatively activated macrophage': {}}},\n", + " 'tissue-resident macrophage': {'Kupffer cell': {},\n", + " 'peritoneal macrophage': {},\n", + " 'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'mesangial phagocyte': {},\n", + " 'thymic macrophage': {'thymic medullary macrophage': {},\n", + " 'thymic cortical macrophage': {}},\n", + " 'secondary lymphoid organ macrophage': {'lymph node macrophage': {'lymph node subcapsular sinus macrophage': {},\n", + " 'lymph node tingible body macrophage': {}},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}},\n", + " 'mucosa-associated lymphoid tissue macrophage': {'gut-associated lymphoid tissue macrophage': {'gastrointestinal tract (lamina propria) macrophage': {'gastrointestinal tract (lamina propria) macrophage of small intestine': {},\n", + " 'gastrointestinal tract (lamina propria) macrophage of large intestine': {}},\n", + " 'tonsillar macrophage': {},\n", + " \"Peyer's patch macrophage\": {}},\n", + " 'nasal and broncial associated lymphoid tissue macrophage': {}}},\n", + " 'central nervous system macrophage': {'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'meningeal macrophage': {},\n", + " 'choroid-plexus macrophage': {},\n", + " 'perivascular macrophage': {}},\n", + " 'melanophage': {},\n", + " 'pleural macrophage': {},\n", + " 'bone marrow macrophage': {},\n", + " 'adipose macrophage': {'F4/80-negative adipose macrophage': {},\n", + " 'F4/80-positive adipose macrophage': {}},\n", + " 'kidney resident macrophage': {},\n", + " 'lung interstitial macrophage': {}},\n", + " 'epithelioid macrophage': {},\n", + " 'appendix macrophage': {},\n", + " 'colon macrophage': {},\n", + " 'macrophage of medullary sinus of lymph node': {},\n", + " 'anorectum macrophage': {},\n", + " 'lung macrophage': {'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'lung interstitial macrophage': {}},\n", + " 'Hofbauer cell': {}},\n", + " 'Langerhans cell': {'CD1a-positive Langerhans cell': {'immature CD1a-positive Langerhans cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {}},\n", + " 'CD8_alpha-low Langerhans cell': {'immature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {}},\n", + " 'epidermal Langerhans cell': {}},\n", + " 'monocyte': {'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'non-classical monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}},\n", + " 'CD14-low, CD16-positive monocyte': {}},\n", + " 'CD115-positive monocyte': {'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}},\n", + " 'CD14-positive monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'CD14-low, CD16-positive monocyte': {},\n", + " 'CD14-positive, CD16-positive monocyte': {'CD14-positive, CD16-low monocyte': {}}},\n", + " 'intermediate monocyte': {'CD14-positive, CD16-low monocyte': {},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}}},\n", + " 'multinucleated giant cell': {},\n", + " 'myeloid dendritic cell': {'myeloid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {},\n", + " 'CD1c-positive myeloid dendritic cell': {},\n", + " 'CD16-positive myeloid dendritic cell': {'immature CD16-positive myeloid dendritic cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'monocyte-derived dendritic cell': {}},\n", + " 'immature conventional dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'immature interstitial dendritic cell': {},\n", + " 'immature CD1a-positive Langerhans cell': {},\n", + " 'immature CD8_alpha-low Langerhans cell': {},\n", + " 'immature CD16-positive myeloid dendritic cell': {}},\n", + " 'mature conventional dendritic cell': {'mature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'myeloid suppressor cell': {'Gr1-high myeloid suppressor cell': {},\n", + " 'Gr1-low myeloid suppressor cell': {}},\n", + " 'immature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-negative CD11b-negative dendritic cell': {'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-negative dendritic cell': {}},\n", + " 'CD4-positive CD11b-positive dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {}},\n", + " 'CD8_alpha-positive CD11b-negative dendritic cell': {'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {}},\n", + " 'CD103-positive dendritic cell': {'langerin-positive dermal dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {}},\n", + " 'adipose dendritic cell': {'SIRPa-positive adipose dendritic cell': {},\n", + " 'SIRPa-negative adipose dendritic cell': {}}},\n", + " 'mononuclear cell': {'dendritic cell': {'plasmacytoid dendritic cell': {'thymic plasmacytoid dendritic cell': {},\n", + " 'CD11c-low plasmacytoid dendritic cell': {'immature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-negative plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-positive plasmacytoid dendritic cell': {}},\n", + " 'CD11c-negative plasmacytoid dendritic cell': {'immature CD11c-negative plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-negative plasmacytoid dendritic cell': {}},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {}},\n", + " 'conventional dendritic cell': {'Langerhans cell': {'CD1a-positive Langerhans cell': {'immature CD1a-positive Langerhans cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {}},\n", + " 'CD8_alpha-low Langerhans cell': {'immature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {}},\n", + " 'epidermal Langerhans cell': {}},\n", + " 'myeloid dendritic cell': {'myeloid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {},\n", + " 'CD1c-positive myeloid dendritic cell': {},\n", + " 'CD16-positive myeloid dendritic cell': {'immature CD16-positive myeloid dendritic cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'monocyte-derived dendritic cell': {}},\n", + " 'immature conventional dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'immature interstitial dendritic cell': {},\n", + " 'immature CD1a-positive Langerhans cell': {},\n", + " 'immature CD8_alpha-low Langerhans cell': {},\n", + " 'immature CD16-positive myeloid dendritic cell': {}},\n", + " 'mature conventional dendritic cell': {'mature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'thymic conventional dendritic cell': {'CD8alpha-positive thymic conventional dendritic cell': {},\n", + " 'CD8alpha-negative thymic conventional dendritic cell': {}},\n", + " 'CD8_alpha-negative CD11b-negative dendritic cell': {'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-negative dendritic cell': {}},\n", + " 'CD8_alpha-positive CD11b-negative dendritic cell': {'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {}},\n", + " 'CD103-positive dendritic cell': {'langerin-positive dermal dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {}},\n", + " 'adipose dendritic cell': {'SIRPa-positive adipose dendritic cell': {},\n", + " 'SIRPa-negative adipose dendritic cell': {}},\n", + " 'CD11b-positive dendritic cell': {'CD4-positive CD11b-positive dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {}},\n", + " 'dermal dendritic cell': {'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'langerin-positive dermal dendritic cell': {},\n", + " 'langerin-negative dermal dendritic cell': {},\n", + " 'CD14-positive dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD14-positive dermal dendritic cell': {}},\n", + " 'CD1a-positive dermal dendritic cell': {'immature CD1a-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}}},\n", + " 'interstitial dendritic cell': {'immature interstitial dendritic cell': {},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'kidney resident dendritic cell': {}},\n", + " 'Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell': {'liver CD103-negative dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {},\n", + " 'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}},\n", + " 'epidermal Langerhans cell': {},\n", + " 'small intestine serosal dendritic cell': {}},\n", + " 'langerin-positive lymph node dendritic cell': {'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {}},\n", + " 'langerin-negative, CD103-negative lymph node dendritic cell': {'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}}},\n", + " 'dendritic cell, human': {'myeloid dendritic cell, human': {},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'Axl+ dendritic cell, human': {}},\n", + " 'dendritic cell of appendix': {},\n", + " 'liver dendritic cell': {},\n", + " 'lung migratory dendritic cell': {}},\n", + " 'lymphocyte': {'T cell': {'alpha-beta T cell': {'immature alpha-beta T cell': {'double-positive, alpha-beta thymocyte': {'resting double-positive thymocyte': {},\n", + " 'double-positive blast': {},\n", + " 'CD69-positive double-positive thymocyte': {},\n", + " 'CD4-intermediate, CD8-positive double-positive thymocyte': {},\n", + " 'CD4-positive, CD8-intermediate double-positive thymocyte': {}},\n", + " 'CD4-positive, alpha-beta thymocyte': {'CD24-positive, CD4 single-positive thymocyte': {},\n", + " 'CD69-positive, CD4-positive single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta thymocyte': {'CD24-positive, CD8 single-positive thymocyte': {},\n", + " 'CD69-positive, CD8-positive single-positive thymocyte': {}},\n", + " 'immature NK T cell': {'immature NK T cell stage I': {},\n", + " 'immature NK T cell stage II': {},\n", + " 'immature NK T cell stage III': {},\n", + " 'immature NK T cell stage IV': {}}},\n", + " 'mature alpha-beta T cell': {'CD4-positive, alpha-beta T cell': {'CD4-positive helper T cell': {'T-helper 1 cell': {},\n", + " 'T-helper 2 cell': {},\n", + " 'T-helper 17 cell': {},\n", + " 'Tr1 cell': {},\n", + " 'T-helper 22 cell': {},\n", + " 'T follicular helper cell': {'germinal center T cell': {}},\n", + " 'T-helper 9 cell': {}},\n", + " 'CD4-positive, CD25-positive, alpha-beta regulatory T cell': {'induced T-regulatory cell': {},\n", + " 'natural T-regulatory cell': {},\n", + " 'CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell': {'naive CCR4-positive regulatory T cell': {},\n", + " 'memory CCR4-positive regulatory T cell': {},\n", + " 'activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human': {}},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}}},\n", + " 'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'naive thymus-derived CD4-positive, alpha-beta T cell': {},\n", + " 'activated CD4-positive, alpha-beta T cell': {'activated CD4-positive, alpha-beta T cell, human': {}},\n", + " 'CD4-positive, alpha-beta memory T cell': {'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD4-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD4-positive, alpha-beta T cell': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}},\n", + " 'lung resident memory CD4-positive, alpha-beta T cell': {}},\n", + " 'CD4-positive, alpha-beta cytotoxic T cell': {},\n", + " 'effector CD4-positive, alpha-beta T cell': {},\n", + " 'CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'T-helper 2 cell': {}},\n", + " 'mature CD4 single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta T cell': {'CD8-positive, alpha-beta cytotoxic T cell': {},\n", + " 'CD8-positive, alpha-beta regulatory T cell': {'CD8-positive, CD25-positive, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CD28-negative, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CXCR3-positive, alpha-beta regulatory T cell': {}},\n", + " 'naive thymus-derived CD8-positive, alpha-beta T cell': {},\n", + " 'activated CD8-positive, alpha-beta T cell': {'activated CD8-positive, alpha-beta T cell, human': {}},\n", + " 'CD8-positive, alpha-beta cytokine secreting effector T cell': {'Tc1 cell': {},\n", + " 'Tc2 cell': {},\n", + " 'Tc17 cell': {}},\n", + " 'CD8-positive, alpha-beta memory T cell': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD8-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD8-positive, alpha-beta T cell': {},\n", + " 'effector memory CD8-positive, alpha-beta T cell': {}},\n", + " 'lung resident memory CD8-positive, alpha-beta T cell': {'lung resident memory CD8-positive, CD103-positive, alpha-beta T cell': {}}},\n", + " 'effector CD8-positive, alpha-beta T cell': {},\n", + " 'CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'Tc2 cell': {}},\n", + " 'mature CD8 single-positive thymocyte': {}},\n", + " 'alpha-beta intraepithelial T cell': {'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'CD8-alpha-beta-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD4-negative, CD8-negative, alpha-beta intraepithelial T cell': {}},\n", + " 'mature NK T cell': {'type I NK T cell': {'CD4-positive type I NK T cell': {'activated CD4-positive type I NK T cell': {},\n", + " 'CD4-positive type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-positive type I NK T cell secreting interleukin-4': {}},\n", + " 'CD4-negative, CD8-negative type I NK T cell': {'activated CD4-negative, CD8-negative type I NK T cell': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interleukin-4': {}}},\n", + " 'type II NK T cell': {'activated type II NK T cell': {},\n", + " 'type II NK T cell secreting interferon-gamma': {},\n", + " 'type II NK T cell secreting interleukin-4': {}}},\n", + " 'mucosal invariant T cell': {},\n", + " 'effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {}}}},\n", + " 'gamma-delta T cell': {'immature gamma-delta T cell': {'CD25-positive, CD27-positive immature gamma-delta T cell': {}},\n", + " 'mature gamma-delta T cell': {'gamma-delta intraepithelial T cell': {'CD8-alpha alpha positive, gamma-delta intraepithelial T cell': {'Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell': {},\n", + " 'Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell': {}},\n", + " 'CD4-negative CD8-negative gamma-delta intraepithelial T cell': {}},\n", + " 'dendritic epidermal T cell': {},\n", + " 'CD27-positive gamma-delta T cell': {},\n", + " 'CD27-negative gamma-delta T cell': {}},\n", + " 'gamma-delta thymocyte': {'immature Vgamma2-positive thymocyte': {},\n", + " 'mature Vgamma2-positive thymocyte': {},\n", + " 'immature Vgamma2-negative thymocyte': {},\n", + " 'mature Vgamma2-negative thymocyte': {},\n", + " 'Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {'mature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {},\n", + " 'immature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {}},\n", + " 'Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {'immature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {},\n", + " 'mature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {}}}},\n", + " 'mature T cell': {'mature alpha-beta T cell': {'CD4-positive, alpha-beta T cell': {'CD4-positive helper T cell': {'T-helper 1 cell': {},\n", + " 'T-helper 2 cell': {},\n", + " 'T-helper 17 cell': {},\n", + " 'Tr1 cell': {},\n", + " 'T-helper 22 cell': {},\n", + " 'T follicular helper cell': {'germinal center T cell': {}},\n", + " 'T-helper 9 cell': {}},\n", + " 'CD4-positive, CD25-positive, alpha-beta regulatory T cell': {'induced T-regulatory cell': {},\n", + " 'natural T-regulatory cell': {},\n", + " 'CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell': {'naive CCR4-positive regulatory T cell': {},\n", + " 'memory CCR4-positive regulatory T cell': {},\n", + " 'activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human': {}},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}}},\n", + " 'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'naive thymus-derived CD4-positive, alpha-beta T cell': {},\n", + " 'activated CD4-positive, alpha-beta T cell': {'activated CD4-positive, alpha-beta T cell, human': {}},\n", + " 'CD4-positive, alpha-beta memory T cell': {'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD4-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD4-positive, alpha-beta T cell': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}},\n", + " 'lung resident memory CD4-positive, alpha-beta T cell': {}},\n", + " 'CD4-positive, alpha-beta cytotoxic T cell': {},\n", + " 'effector CD4-positive, alpha-beta T cell': {},\n", + " 'CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'T-helper 2 cell': {}},\n", + " 'mature CD4 single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta T cell': {'CD8-positive, alpha-beta cytotoxic T cell': {},\n", + " 'CD8-positive, alpha-beta regulatory T cell': {'CD8-positive, CD25-positive, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CD28-negative, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CXCR3-positive, alpha-beta regulatory T cell': {}},\n", + " 'naive thymus-derived CD8-positive, alpha-beta T cell': {},\n", + " 'activated CD8-positive, alpha-beta T cell': {'activated CD8-positive, alpha-beta T cell, human': {}},\n", + " 'CD8-positive, alpha-beta cytokine secreting effector T cell': {'Tc1 cell': {},\n", + " 'Tc2 cell': {},\n", + " 'Tc17 cell': {}},\n", + " 'CD8-positive, alpha-beta memory T cell': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD8-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD8-positive, alpha-beta T cell': {},\n", + " 'effector memory CD8-positive, alpha-beta T cell': {}},\n", + " 'lung resident memory CD8-positive, alpha-beta T cell': {'lung resident memory CD8-positive, CD103-positive, alpha-beta T cell': {}}},\n", + " 'effector CD8-positive, alpha-beta T cell': {},\n", + " 'CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'Tc2 cell': {}},\n", + " 'mature CD8 single-positive thymocyte': {}},\n", + " 'alpha-beta intraepithelial T cell': {'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'CD8-alpha-beta-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD4-negative, CD8-negative, alpha-beta intraepithelial T cell': {}},\n", + " 'mature NK T cell': {'type I NK T cell': {'CD4-positive type I NK T cell': {'activated CD4-positive type I NK T cell': {},\n", + " 'CD4-positive type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-positive type I NK T cell secreting interleukin-4': {}},\n", + " 'CD4-negative, CD8-negative type I NK T cell': {'activated CD4-negative, CD8-negative type I NK T cell': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interleukin-4': {}}},\n", + " 'type II NK T cell': {'activated type II NK T cell': {},\n", + " 'type II NK T cell secreting interferon-gamma': {},\n", + " 'type II NK T cell secreting interleukin-4': {}}},\n", + " 'mucosal invariant T cell': {},\n", + " 'effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {}}},\n", + " 'mature gamma-delta T cell': {'gamma-delta intraepithelial T cell': {'CD8-alpha alpha positive, gamma-delta intraepithelial T cell': {'Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell': {},\n", + " 'Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell': {}},\n", + " 'CD4-negative CD8-negative gamma-delta intraepithelial T cell': {}},\n", + " 'dendritic epidermal T cell': {},\n", + " 'CD27-positive gamma-delta T cell': {},\n", + " 'CD27-negative gamma-delta T cell': {}},\n", + " 'memory T cell': {'CD4-positive, alpha-beta memory T cell': {'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD4-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD4-positive, alpha-beta T cell': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}},\n", + " 'lung resident memory CD4-positive, alpha-beta T cell': {}},\n", + " 'CD8-positive, alpha-beta memory T cell': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD8-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD8-positive, alpha-beta T cell': {},\n", + " 'effector memory CD8-positive, alpha-beta T cell': {}},\n", + " 'lung resident memory CD8-positive, alpha-beta T cell': {'lung resident memory CD8-positive, CD103-positive, alpha-beta T cell': {}}}},\n", + " 'regulatory T cell': {'CD4-positive, CD25-positive, alpha-beta regulatory T cell': {'induced T-regulatory cell': {},\n", + " 'natural T-regulatory cell': {},\n", + " 'CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell': {'naive CCR4-positive regulatory T cell': {},\n", + " 'memory CCR4-positive regulatory T cell': {},\n", + " 'activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human': {}},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}}},\n", + " 'CD8-positive, alpha-beta regulatory T cell': {'CD8-positive, CD25-positive, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CD28-negative, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CXCR3-positive, alpha-beta regulatory T cell': {}},\n", + " 'Tr1 cell': {},\n", + " 'T follicular regulatory cell': {}},\n", + " 'naive T cell': {'naive thymus-derived CD4-positive, alpha-beta T cell': {},\n", + " 'naive thymus-derived CD8-positive, alpha-beta T cell': {},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}}},\n", + " 'effector T cell': {'cytotoxic T cell': {},\n", + " 'helper T cell': {},\n", + " 'effector CD4-positive, alpha-beta T cell': {},\n", + " 'effector CD8-positive, alpha-beta T cell': {},\n", + " 'innate effector T cell': {},\n", + " 'exhausted T cell': {}},\n", + " 'intraepithelial lymphocyte': {'alpha-beta intraepithelial T cell': {'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'CD8-alpha-beta-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD4-negative, CD8-negative, alpha-beta intraepithelial T cell': {}},\n", + " 'gamma-delta intraepithelial T cell': {'CD8-alpha alpha positive, gamma-delta intraepithelial T cell': {'Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell': {},\n", + " 'Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell': {}},\n", + " 'CD4-negative CD8-negative gamma-delta intraepithelial T cell': {}}},\n", + " \"small intestine Peyer's patch T cell\": {}},\n", + " 'immature T cell': {'immature alpha-beta T cell': {'double-positive, alpha-beta thymocyte': {'resting double-positive thymocyte': {},\n", + " 'double-positive blast': {},\n", + " 'CD69-positive double-positive thymocyte': {},\n", + " 'CD4-intermediate, CD8-positive double-positive thymocyte': {},\n", + " 'CD4-positive, CD8-intermediate double-positive thymocyte': {}},\n", + " 'CD4-positive, alpha-beta thymocyte': {'CD24-positive, CD4 single-positive thymocyte': {},\n", + " 'CD69-positive, CD4-positive single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta thymocyte': {'CD24-positive, CD8 single-positive thymocyte': {},\n", + " 'CD69-positive, CD8-positive single-positive thymocyte': {}},\n", + " 'immature NK T cell': {'immature NK T cell stage I': {},\n", + " 'immature NK T cell stage II': {},\n", + " 'immature NK T cell stage III': {},\n", + " 'immature NK T cell stage IV': {}}},\n", + " 'immature gamma-delta T cell': {'CD25-positive, CD27-positive immature gamma-delta T cell': {}},\n", + " 'thymocyte': {'immature single positive thymocyte': {},\n", + " 'double-positive, alpha-beta thymocyte': {'resting double-positive thymocyte': {},\n", + " 'double-positive blast': {},\n", + " 'CD69-positive double-positive thymocyte': {},\n", + " 'CD4-intermediate, CD8-positive double-positive thymocyte': {},\n", + " 'CD4-positive, CD8-intermediate double-positive thymocyte': {}},\n", + " 'CD4-positive, alpha-beta thymocyte': {'CD24-positive, CD4 single-positive thymocyte': {},\n", + " 'CD69-positive, CD4-positive single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta thymocyte': {'CD24-positive, CD8 single-positive thymocyte': {},\n", + " 'CD69-positive, CD8-positive single-positive thymocyte': {}},\n", + " 'CD25-positive, CD27-positive immature gamma-delta T cell': {},\n", + " 'fetal thymocyte': {'immature dendritic epithelial T cell precursor': {},\n", + " 'immature Vgamma2-positive fetal thymocyte': {},\n", + " 'mature dendritic epithelial T cell precursor': {},\n", + " 'mature Vgamma2-positive fetal thymocyte': {}},\n", + " 'double negative thymocyte': {'DN2 thymocyte': {'DN2a thymocyte': {},\n", + " 'DN2b thymocyte': {}},\n", + " 'DN3 thymocyte': {},\n", + " 'DN4 thymocyte': {},\n", + " 'gamma-delta thymocyte': {'immature Vgamma2-positive thymocyte': {},\n", + " 'mature Vgamma2-positive thymocyte': {},\n", + " 'immature Vgamma2-negative thymocyte': {},\n", + " 'mature Vgamma2-negative thymocyte': {},\n", + " 'Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {'mature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {},\n", + " 'immature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {}},\n", + " 'Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {'immature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {},\n", + " 'mature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {}}},\n", + " 'specified double negative thymocyte (Homo sapiens)': {},\n", + " 'committed double negative thymocyte (Homo sapiens)': {},\n", + " 'rearranging double negative thymocyte (Homo sapiens)': {},\n", + " 'double negative T regulatory cell': {}},\n", + " 'CD8aa(I) thymocyte': {},\n", + " 'CD8aa(II) thymocyte': {}}},\n", + " 'T cell of appendix': {},\n", + " 'T cell of medullary sinus of lymph node': {},\n", + " 'T cell of anorectum': {},\n", + " 'lymph node paracortex T cell': {}},\n", + " 'lymphocyte of B lineage': {'B cell': {'B cell, CD19-positive': {'mature B cell': {'memory B cell': {'unswitched memory B cell': {'CD38-negative unswitched memory B cell': {'B220-positive CD38-negative unswitched memory B cell': {'B220-low CD38-negative unswitched memory B cell': {}}},\n", + " 'CD38-positive unswitched memory B cell': {'B220-positive CD38-positive unswitched memory B cell': {'B220-low CD38-positive unswitched memory B cell': {}}}},\n", + " 'class switched memory B cell': {'IgE memory B cell': {},\n", + " 'IgA memory B cell': {},\n", + " 'IgG memory B cell': {'CD38-positive IgG memory B cell': {'IgD-positive CD38-positive IgG memory B cell': {},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {}},\n", + " 'CD38-negative IgG memory B cell': {}},\n", + " 'IgG-negative class switched memory B cell': {'CD38-negative IgG-negative class switched memory B cell': {'CD24-positive CD38-negative IgG-negative class switched memory B cell': {},\n", + " 'CD24-negative CD38-negative IgG-negative class switched memory B cell': {}},\n", + " 'CD38-positive IgG-negative class switched memory B cell': {'B220-positive CD38-positive IgG-negative class switched memory B cell': {'B220-low CD38-positive IgG-negative class switched memory B cell': {}}}}},\n", + " 'IgD-negative memory B cell': {'Bm5 B cell': {},\n", + " 'IgM memory B cell': {},\n", + " 'double negative memory B cell': {'IgG-positive double negative memory B cell': {},\n", + " 'IgG-negative double negative memory B cell': {}},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {},\n", + " 'CD38-negative IgG memory B cell': {}}},\n", + " 'naive B cell': {'CD38-positive naive B cell': {'B220-positive CD38-positive naive B cell': {'B220-low CD38-positive naive B cell': {}}},\n", + " 'CD38-negative naive B cell': {}},\n", + " 'B-1 B cell': {'B-1a B cell': {}, 'B-1b B cell': {}},\n", + " 'B-2 B cell': {'follicular B cell': {'Bm1 B cell': {},\n", + " 'Bm2 B cell': {}},\n", + " 'fraction F mature B cell': {'Bm1 B cell': {}},\n", + " \"Peyer's patch B cell\": {}},\n", + " 'germinal center B cell': {'Bm3-delta B cell': {},\n", + " \"Bm2' B cell\": {},\n", + " 'Bm3 B cell': {},\n", + " 'Bm4 B cell': {},\n", + " 'centrocyte': {},\n", + " 'centroblast': {},\n", + " 'tonsil germinal center B cell': {}},\n", + " 'marginal zone B cell of spleen': {},\n", + " 'Be cell': {'Be1 Cell': {}, 'Be2 cell': {}},\n", + " 'regulatory B cell': {},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}},\n", + " 'marginal zone B cell of lymph node': {}},\n", + " 'immature B cell': {'fraction E immature B cell': {},\n", + " 'CD38-negative immature B cell': {}},\n", + " 'precursor B cell': {'pre-B-II cell': {'small pre-B-II cell': {'CD22-positive, CD38-low small pre-B cell': {}},\n", + " 'large pre-B-II cell': {'preBCR-positive large pre-B-II cell': {'CD38-high pre-BCR positive cell': {}},\n", + " 'preBCR-negative large pre-B-II cell': {}}},\n", + " 'pre-B-I cell': {},\n", + " 'late pro-B cell': {},\n", + " \"fraction C' precursor B cell\": {},\n", + " 'fraction B/C precursor B cell': {'fraction B precursor B cell': {},\n", + " 'fraction C precursor B cell': {},\n", + " 'fraction D precursor B cell': {}}},\n", + " 'transitional stage B cell': {'T1 B cell': {},\n", + " 'T2 B cell': {},\n", + " 'T3 B cell': {}}},\n", + " 'B cell of appendix': {},\n", + " 'lymph node mantle zone B cell': {},\n", + " 'B cell of medullary sinus of lymph node': {},\n", + " 'B cell of anorectum': {},\n", + " 'monocytoid B cell': {}},\n", + " 'antibody secreting cell': {'plasma cell': {'long lived plasma cell': {'IgE plasma cell': {},\n", + " 'IgG plasma cell': {},\n", + " 'IgM plasma cell': {},\n", + " 'IgA plasma cell': {}},\n", + " 'short lived plasma cell': {'IgE short lived plasma cell': {},\n", + " 'IgA short lived plasma cell': {},\n", + " 'IgG short lived plasma cell': {},\n", + " 'IgM short lived plasma cell': {}},\n", + " 'plasma cell of appendix': {},\n", + " 'plasma cell of medullary sinus of lymph node': {}},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}}},\n", + " 'lymphocyte of B lineage, CD19-positive': {'B cell, CD19-positive': {'mature B cell': {'memory B cell': {'unswitched memory B cell': {'CD38-negative unswitched memory B cell': {'B220-positive CD38-negative unswitched memory B cell': {'B220-low CD38-negative unswitched memory B cell': {}}},\n", + " 'CD38-positive unswitched memory B cell': {'B220-positive CD38-positive unswitched memory B cell': {'B220-low CD38-positive unswitched memory B cell': {}}}},\n", + " 'class switched memory B cell': {'IgE memory B cell': {},\n", + " 'IgA memory B cell': {},\n", + " 'IgG memory B cell': {'CD38-positive IgG memory B cell': {'IgD-positive CD38-positive IgG memory B cell': {},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {}},\n", + " 'CD38-negative IgG memory B cell': {}},\n", + " 'IgG-negative class switched memory B cell': {'CD38-negative IgG-negative class switched memory B cell': {'CD24-positive CD38-negative IgG-negative class switched memory B cell': {},\n", + " 'CD24-negative CD38-negative IgG-negative class switched memory B cell': {}},\n", + " 'CD38-positive IgG-negative class switched memory B cell': {'B220-positive CD38-positive IgG-negative class switched memory B cell': {'B220-low CD38-positive IgG-negative class switched memory B cell': {}}}}},\n", + " 'IgD-negative memory B cell': {'Bm5 B cell': {},\n", + " 'IgM memory B cell': {},\n", + " 'double negative memory B cell': {'IgG-positive double negative memory B cell': {},\n", + " 'IgG-negative double negative memory B cell': {}},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {},\n", + " 'CD38-negative IgG memory B cell': {}}},\n", + " 'naive B cell': {'CD38-positive naive B cell': {'B220-positive CD38-positive naive B cell': {'B220-low CD38-positive naive B cell': {}}},\n", + " 'CD38-negative naive B cell': {}},\n", + " 'B-1 B cell': {'B-1a B cell': {}, 'B-1b B cell': {}},\n", + " 'B-2 B cell': {'follicular B cell': {'Bm1 B cell': {},\n", + " 'Bm2 B cell': {}},\n", + " 'fraction F mature B cell': {'Bm1 B cell': {}},\n", + " \"Peyer's patch B cell\": {}},\n", + " 'germinal center B cell': {'Bm3-delta B cell': {},\n", + " \"Bm2' B cell\": {},\n", + " 'Bm3 B cell': {},\n", + " 'Bm4 B cell': {},\n", + " 'centrocyte': {},\n", + " 'centroblast': {},\n", + " 'tonsil germinal center B cell': {}},\n", + " 'marginal zone B cell of spleen': {},\n", + " 'Be cell': {'Be1 Cell': {}, 'Be2 cell': {}},\n", + " 'regulatory B cell': {},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}},\n", + " 'marginal zone B cell of lymph node': {}},\n", + " 'immature B cell': {'fraction E immature B cell': {},\n", + " 'CD38-negative immature B cell': {}},\n", + " 'precursor B cell': {'pre-B-II cell': {'small pre-B-II cell': {'CD22-positive, CD38-low small pre-B cell': {}},\n", + " 'large pre-B-II cell': {'preBCR-positive large pre-B-II cell': {'CD38-high pre-BCR positive cell': {}},\n", + " 'preBCR-negative large pre-B-II cell': {}}},\n", + " 'pre-B-I cell': {},\n", + " 'late pro-B cell': {},\n", + " \"fraction C' precursor B cell\": {},\n", + " 'fraction B/C precursor B cell': {'fraction B precursor B cell': {},\n", + " 'fraction C precursor B cell': {},\n", + " 'fraction D precursor B cell': {}}},\n", + " 'transitional stage B cell': {'T1 B cell': {},\n", + " 'T2 B cell': {},\n", + " 'T3 B cell': {}}}},\n", + " 'B-lymphoblast': {}},\n", + " 'innate lymphoid cell': {'group 1 innate lymphoid cell': {'natural killer cell': {'immature natural killer cell': {'CD56-positive, CD161-positive immature natural killer cell, human': {},\n", + " 'CD56-negative, CD161-positive immature natural killer cell, human': {},\n", + " 'CD27-low, CD11b-low immature natural killer cell, mouse': {},\n", + " 'Dx5-negative, NK1.1-positive immature natural killer cell, mouse': {}},\n", + " 'mature natural killer cell': {'CD16-negative, CD56-bright natural killer cell, human': {},\n", + " 'CD16-positive, CD56-dim natural killer cell, human': {},\n", + " 'decidual natural killer cell, human': {},\n", + " 'CD27-high, CD11b-high natural killer cell, mouse': {},\n", + " 'CD27-low, CD11b-high natural killer cell, mouse': {},\n", + " 'CD27-high, CD11b-low natural killer cell, mouse': {},\n", + " 'NK1.1-positive natural killer cell, mouse': {'CD11b-positive, CD27-positive natural killer cell, mouse': {},\n", + " 'NKGA2-positive natural killer cell, mouse': {},\n", + " 'Ly49D-positive natural killer cell, mouse': {},\n", + " 'CD94-positive natural killer cell, mouse': {'CD94-positive Ly49CI-positive natural killer cell, mouse': {}},\n", + " 'Ly49CI-positive natural killer cell, mouse': {'CD94-positive Ly49CI-positive natural killer cell, mouse': {}},\n", + " 'Ly49H-positive natural killer cell, mouse': {},\n", + " 'Ly49D-negative natural killer cell, mouse': {},\n", + " 'Ly49CI-negative natural killer cell, mouse': {},\n", + " 'CD94-negative natural killer cell, mouse': {},\n", + " 'Ly49H-negative natural killer cell, mouse': {}}},\n", + " 'pre-natural killer cell': {},\n", + " 'CD94-negative, Ly49CI-negative natural killer cell, mouse': {},\n", + " 'hepatic pit cell': {}},\n", + " 'ILC1': {'ILC1, human': {}}},\n", + " 'group 2 innate lymphoid cell': {'group 2 innate lymphoid cell, human': {},\n", + " 'group 2 innate lymphoid cell, mouse': {}},\n", + " 'group 3 innate lymphoid cell': {'group 3 innate lymphoid cell, human': {'NKp44-positive group 3 innate lymphoid cell, human': {},\n", + " 'NKp44-negative group 3 innate lymphoid cell, human': {}},\n", + " 'lymphoid tissue–inducer cell': {}},\n", + " 'immature innate lymphoid cell': {'immature natural killer cell': {'CD56-positive, CD161-positive immature natural killer cell, human': {},\n", + " 'CD56-negative, CD161-positive immature natural killer cell, human': {},\n", + " 'CD27-low, CD11b-low immature natural killer cell, mouse': {},\n", + " 'Dx5-negative, NK1.1-positive immature natural killer cell, mouse': {}},\n", + " 'CD34-negative, CD117-positive innate lymphoid cell, human': {'CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human': {},\n", + " 'KLRG1-positive innate lymphoid cell, human': {}},\n", + " 'CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human': {'NKp46-positive innate lymphoid cell, human': {}}}},\n", + " 'natural helper lymphocyte': {},\n", + " \"Peyer's patch lymphocyte\": {\"Peyer's patch B cell\": {},\n", + " \"small intestine Peyer's patch T cell\": {}},\n", + " 'lymphocyte of large intestine lamina propria': {},\n", + " 'lymphocyte of small intestine lamina propria': {},\n", + " 'lymphoblast': {'B-lymphoblast': {}},\n", + " 'blood lymphocyte': {'peripheral blood lymphocyte': {}}},\n", + " 'monocyte': {'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'non-classical monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}},\n", + " 'CD14-low, CD16-positive monocyte': {}},\n", + " 'CD115-positive monocyte': {'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}},\n", + " 'CD14-positive monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'CD14-low, CD16-positive monocyte': {},\n", + " 'CD14-positive, CD16-positive monocyte': {'CD14-positive, CD16-low monocyte': {}}},\n", + " 'intermediate monocyte': {'CD14-positive, CD16-low monocyte': {},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}}},\n", + " 'mononuclear osteoclast': {'mononuclear odontoclast': {}},\n", + " 'mononuclear cell of bone marrow': {},\n", + " 'peripheral blood mononuclear cell': {'blood lymphocyte': {'peripheral blood lymphocyte': {}}},\n", + " 'mononuclear cell of umbilical cord': {}},\n", + " 'nongranular leukocyte': {'neutrophilic myelocyte': {},\n", + " 'eosinophilic myelocyte': {},\n", + " 'basophilic myelocyte': {}},\n", + " 'splenocyte': {'marginal zone B cell of spleen': {},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}}}},\n", + " 'mesenchymal cell': {'mesenchyme condensation cell': {},\n", + " 'dental papilla cell': {},\n", + " 'cardiac mesenchymal cell': {'endocardial cushion cell': {}},\n", + " 'fibro/adipogenic progenitor cell': {}},\n", + " 'motile sperm cell': {'amoeboid sperm cell': {},\n", + " 'flagellated sperm cell': {}}},\n", + " 'anucleate cell': {'platelet': {},\n", + " 'enucleate erythrocyte': {'GlyA-positive erythrocyte': {},\n", + " 'Ly-76 high positive erythrocyte': {},\n", + " 'echinocyte': {},\n", + " 'fetal derived definitive erythrocyte': {}},\n", + " 'corneocyte': {},\n", + " 'enucleated reticulocyte': {'Ly-76 high reticulocyte': {},\n", + " 'GlyA-positive reticulocytes': {}}},\n", + " 'eukaryotic cell': {'Eumycetozoan cell': {},\n", + " 'fungal cell': {'hyphal cell': {},\n", + " 'vegetative cell (sensu Fungi)': {},\n", + " 'heterokaryon': {'dikaryon': {}},\n", + " 'fungal spore': {'sexual spore': {'ascospore': {},\n", + " 'zygospore': {},\n", + " 'basidiospore': {}},\n", + " 'fungal asexual spore': {'conidium': {'macroconidium': {'uninucleate macroconidium': {'uninucleate arthroconidium': {},\n", + " 'uninucleate blastconidium': {}},\n", + " 'blastoconidium': {'uninucleate blastconidium': {},\n", + " 'multinucleate blastoconidium': {}},\n", + " 'multinucleate macroconidium': {'multinucleate arthroconidium': {},\n", + " 'multinucleate blastoconidium': {}},\n", + " 'arthroconidium': {'multinucleate arthroconidium': {},\n", + " 'uninucleate arthroconidium': {}}},\n", + " 'uninucleate conidium': {'microconidium': {},\n", + " 'conidium of conidiophore head': {},\n", + " 'uninucleate macroconidium': {'uninucleate arthroconidium': {},\n", + " 'uninucleate blastconidium': {}}},\n", + " 'multinucleate conidium': {'multinucleate macroconidium': {'multinucleate arthroconidium': {},\n", + " 'multinucleate blastoconidium': {}}}},\n", + " 'chlamydospore': {},\n", + " 'oospore': {}}},\n", + " 'H minus': {},\n", + " 'H plus': {}},\n", + " 'animal cell': {'spermatocyte': {'primary spermatocyte': {},\n", + " 'secondary spermatocyte': {}},\n", + " 'spermatid': {'early spermatid': {}, 'late spermatid': {}},\n", + " 'spermatogonium': {},\n", + " 'oocyte': {'primary oocyte': {}, 'secondary oocyte': {}},\n", + " 'oogonial cell': {},\n", + " 'egg cell': {},\n", + " 'glioblast': {'glioblast (sensu Vertebrata)': {},\n", + " 'glioblast (sensu Nematoda and Protostomia)': {},\n", + " 'Schwann cell precursor': {}},\n", + " 'neuroblast (sensu Vertebrata)': {'cerebellar granule cell precursor': {},\n", + " 'neural crest derived neuroblast': {},\n", + " 'forebrain neuroblast': {}},\n", + " 'stem cell': {'germ line stem cell': {'male germ line stem cell': {},\n", + " 'female germ line stem cell': {}},\n", + " 'multi fate stem cell': {'mesenchymal stem cell': {'metanephric mesenchyme stem cell': {},\n", + " 'hair follicle dermal papilla cell': {'hair follicle dermal papilla cell of scalp': {}},\n", + " 'nephrogenic mesenchyme stem cell': {},\n", + " 'angioblastic mesenchymal cell': {'adult endothelial progenitor cell': {'colony forming unit – Hill cell': {},\n", + " 'circulating angiogenic cell': {},\n", + " 'endothelial colony forming cell': {}}},\n", + " 'amnion mesenchymal stem cell': {},\n", + " 'mesenchymal stem cell of the bone marrow': {'mesenchymal stem cell of femoral bone marrow': {}},\n", + " 'chorionic membrane mesenchymal stem cell': {},\n", + " 'mesenchymal stem cell of umbilical cord': {\"mesenchymal stem cell of Wharton's jelly\": {}},\n", + " 'mesenchymal stem cell of adipose tissue': {'mesenchymal stem cell of abdominal adipose tissue': {}},\n", + " 'hepatic mesenchymal stem cell': {},\n", + " 'vertebral mesenchymal stem cell': {},\n", + " 'amniotic stem cell': {},\n", + " 'mesenchymal lymphangioblast': {},\n", + " 'placental amniotic mesenchymal stromal cell': {}},\n", + " 'blastemal cell': {},\n", + " 'multi-potent skeletal muscle stem cell': {},\n", + " 'stem cell of gastric gland': {},\n", + " 'hepatic stem cell': {'hepatic mesenchymal stem cell': {}},\n", + " 'intestinal crypt stem cell': {'intestinal crypt stem cell of large intestine': {'intestinal crypt stem cell of appendix': {}},\n", + " 'intestinal crypt stem cell of small intestine': {},\n", + " 'intestinal crypt stem cell of colon': {},\n", + " 'intestinal crypt stem cell of anorectum': {}},\n", + " 'type III taste bud cell': {},\n", + " 'keratinocyte stem cell': {},\n", + " 'prostate stem cell': {},\n", + " 'mammary stem cell': {},\n", + " 'cardioblast': {},\n", + " 'retinal progenitor cell': {},\n", + " 'lymphangioblast': {'mesenchymal lymphangioblast': {},\n", + " 'vascular lymphangioblast': {}},\n", + " 'hepatoblast': {},\n", + " 'neural crest cell': {'migratory neural crest cell': {'migratory cranial neural crest cell': {},\n", + " 'migratory trunk neural crest cell': {},\n", + " 'migratory enteric neural crest cell': {},\n", + " 'migratory cardiac neural crest cell': {'cardiac mesenchymal cell': {'endocardial cushion cell': {}}}},\n", + " 'premigratory neural crest cell': {},\n", + " 'vagal neural crest cell': {}}},\n", + " 'somatic stem cell': {'single fate stem cell': {'epithelial fate stem cell': {'stratified epithelial stem cell': {'stratified keratinized epithelial stem cell': {},\n", + " 'stratified non keratinized epithelial stem cell': {}},\n", + " 'seam cell': {},\n", + " 'follicle stem cell (sensu Arthropoda)': {},\n", + " 'basal cell': {'basal cell of epidermis': {'limb basal cell of epidermis': {}},\n", + " 'respiratory basal cell': {'basal cell of epithelium of trachea': {},\n", + " 'basal cell of epithelium of bronchus': {},\n", + " 'basal cell of epithelium of terminal bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of respiratory bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of lobular bronchiole': {}},\n", + " 'epithelial cell of stratum germinativum of esophagus': {},\n", + " 'basal cell of urothelium': {},\n", + " 'airway submucosal gland duct basal cell': {}},\n", + " 'amniotic epithelial stem cell': {}},\n", + " 'hair matrix stem cell': {},\n", + " 'primitive cardiac myocyte': {},\n", + " 'skeletal muscle satellite stem cell': {}},\n", + " 'hematopoietic stem cell': {'Kit and Sca1-positive hematopoietic stem cell': {'short term hematopoietic stem cell': {},\n", + " 'long term hematopoietic stem cell': {}},\n", + " 'CD34-positive, CD38-negative hematopoietic stem cell': {},\n", + " 'peripheral blood stem cell': {'cord blood hematopoietic stem cell': {}},\n", + " 'gestational hematopoietic stem cell': {'fetal liver hematopoietic progenitor cell': {},\n", + " 'yolk sac hematopoietic stem cell': {},\n", + " 'placental hematopoietic stem cell': {},\n", + " 'AGM hematopoietic stem cell': {},\n", + " 'cord blood hematopoietic stem cell': {}}},\n", + " 'totipotent stem cell': {'epiblast cell': {}},\n", + " 'pluripotent stem cell': {},\n", + " 'neuroepithelial stem cell': {},\n", + " 'stem cell of epidermis': {'basal cell of epidermis': {'limb basal cell of epidermis': {}}}},\n", + " 'type IV taste receptor cell': {},\n", + " 'embryonic stem cell': {},\n", + " 'Leydig stem cell': {},\n", + " 'dental pulp stem cell': {}},\n", + " 'epithelial cell': {'ciliated epithelial cell': {'ependymal cell': {'choroid plexus epithelial cell': {}},\n", + " 'brush border epithelial cell': {'enterocyte': {'enterocyte of epithelium of large intestine': {'enterocyte of epithelium proper of large intestine': {},\n", + " 'enterocyte of colon': {}},\n", + " 'enterocyte of appendix': {},\n", + " 'enterocyte of anorectum': {},\n", + " 'vacuolated fetal-type enterocyte': {},\n", + " 'lysosome-rich enterocyte': {},\n", + " 'enterocyte of epithelium of small intestine': {'enterocyte of epithelium of intestinal villus': {},\n", + " 'enterocyte of epithelium of crypt of Lieberkuhn of small intestine': {},\n", + " 'enterocyte of epithelium proper of small intestine': {'enterocyte of epithelium proper of duodenum': {},\n", + " 'enterocyte of epithelium proper of jejunum': {},\n", + " 'enterocyte of epithelium proper of ileum': {}}},\n", + " 'enterocyte of epithelium of duodenal gland': {}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}}},\n", + " 'multi-ciliated epithelial cell': {'ciliated columnar cell of tracheobronchial tree': {'ciliated cell of the bronchus': {}},\n", + " 'fallopian tube ciliated cell': {}},\n", + " 'single ciliated epithelial cell': {},\n", + " 'ciliated epithelial cell of esophagus': {},\n", + " 'endometrial ciliated epithelial cell': {'luminal endometrial ciliated epithelial cell': {},\n", + " 'glandular endometrial ciliated epithelial cell': {}}},\n", + " 'duct epithelial cell': {'branched duct epithelial cell': {'tracheoblast': {},\n", + " 'pancreatic ductal cell': {},\n", + " 'luminal epithelial cell of mammary gland': {'luminal cell of acinus of lactiferous gland': {},\n", + " 'luminal cell of lactiferous duct': {'luminal cell of lactiferous terminal ductal lobular unit': {}}},\n", + " 'pancreatic goblet cell': {},\n", + " 'cholangiocyte': {'intrahepatic cholangiocyte': {},\n", + " 'extrahepatic cholangiocyte': {}}},\n", + " 'non-branched duct epithelial cell': {'epithelial cell of prostatic duct': {},\n", + " 'epithelial cell of lacrimal duct': {'epithelial cell of nasolacrimal duct': {}},\n", + " 'kidney collecting duct epithelial cell': {'kidney collecting duct principal cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney papillary duct principal cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}}}},\n", + " 'basal epithelial cell of prostatic duct': {},\n", + " 'luminal epithelial cell of prostatic duct': {},\n", + " 'seminiferous tubule epithelial cell': {'Sertoli cell': {},\n", + " 'peritubular myoid cell': {}},\n", + " 'myoepithelial cell of lactiferous duct': {},\n", + " 'epithelial cell of lacrimal sac': {},\n", + " 'epididymis glandular cell': {},\n", + " 'seminal vesicle glandular cell': {}},\n", + " 'barrier epithelial cell': {},\n", + " 'columnar/cuboidal epithelial cell': {'simple columnar epithelial cell': {'ameloblast': {},\n", + " 'imaginal disc cell': {}},\n", + " 'myoepithelial cell': {'myoepithelial cell of mammary gland': {'myoepithelial cell of lactiferous alveolus': {},\n", + " 'myoepithelial cell of lactiferous duct': {},\n", + " 'myoepithelial cell of acinus of lactiferous gland': {}},\n", + " 'peritubular myoid cell': {},\n", + " 'myoepithelial cell of intralobular lactiferous duct': {},\n", + " 'myoepithelial cell of sweat gland': {},\n", + " 'myoepithelial cell of terminal lactiferous duct': {},\n", + " 'myoepithelial cell of dilator pupillae': {},\n", + " 'myoepithelial cell of main lactiferous duct': {},\n", + " 'myoepithelial cell of primary lactiferous duct': {},\n", + " 'myoepithelial cell of secondary lactiferous duct': {},\n", + " 'myoepithelial cell of tertiary lactiferous duct': {},\n", + " 'myoepithelial cell of quarternary lactiferous duct': {},\n", + " 'myoepithelial cell of bronchus submucosal gland': {},\n", + " 'myoepithelial cell of trachea gland': {}},\n", + " 'brush border epithelial cell': {'enterocyte': {'enterocyte of epithelium of large intestine': {'enterocyte of epithelium proper of large intestine': {},\n", + " 'enterocyte of colon': {}},\n", + " 'enterocyte of appendix': {},\n", + " 'enterocyte of anorectum': {},\n", + " 'vacuolated fetal-type enterocyte': {},\n", + " 'lysosome-rich enterocyte': {},\n", + " 'enterocyte of epithelium of small intestine': {'enterocyte of epithelium of intestinal villus': {},\n", + " 'enterocyte of epithelium of crypt of Lieberkuhn of small intestine': {},\n", + " 'enterocyte of epithelium proper of small intestine': {'enterocyte of epithelium proper of duodenum': {},\n", + " 'enterocyte of epithelium proper of jejunum': {},\n", + " 'enterocyte of epithelium proper of ileum': {}}},\n", + " 'enterocyte of epithelium of duodenal gland': {}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}}},\n", + " 'stratified cuboidal epithelial cell': {},\n", + " 'sheath cell': {},\n", + " 'neurecto-epithelial cell': {'odontoblast': {'non-terminally differentiated odontoblast': {},\n", + " 'terminally differentiated odontoblast': {}},\n", + " 'ependymal cell': {'choroid plexus epithelial cell': {}},\n", + " 'corneal endothelial cell': {},\n", + " 'neuroendocrine cell': {'amine precursor uptake and decarboxylation cell': {'chromaffin cell': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'interrenal chromaffin cell': {'interrenal norepinephrine type cell': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'chromaffin cell of paraganglion': {'chromaffin cell of paraaortic body': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}}},\n", + " 'paraganglial type 1 cell': {},\n", + " 'Feyrter cell': {'dense-core granulated cell of epithelium of trachea': {}},\n", + " 'magnocellular neurosecretory cell': {'oxytocin-secreting magnocellular cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'gonadotropin-releasing hormone neuron': {},\n", + " 'prostate neuroendocrine cell': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'parvocellular neurosecretory cell': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'Merkel cell': {},\n", + " 'epidermal cell (sensu Arthropoda)': {'tormogen cell': {},\n", + " 'trichogen cell': {}},\n", + " 'epidermoblast': {},\n", + " 'pigmented epithelial cell': {'pigmented ciliary epithelial cell': {}},\n", + " 'parafollicular cell': {},\n", + " 'pinealocyte': {'type I pinealocyte': {}, 'type II pinealocyte': {}},\n", + " 'cerebrospinal fluid secreting cell': {},\n", + " 'interstitial cell of Cajal': {},\n", + " 'olfactory epithelial cell': {'basal cell of olfactory epithelium': {'olfactory epithelial supporting cell': {},\n", + " 'globose cell of olfactory epithelium': {},\n", + " 'basal proper cell of olfactory epithelium': {}}},\n", + " 'folliculostellate cell of pars distalis of adenohypophysis': {},\n", + " 'interstitial cell of pineal gland': {},\n", + " 'supporting cell of carotid body': {'type II cell of carotid body': {}},\n", + " 'type I cell of carotid body': {},\n", + " 'non-pigmented ciliary epithelial cell': {},\n", + " 'meningothelial cell': {},\n", + " 'strial intermediate cell': {},\n", + " 'auditory epithelial supporting cell': {'supporting cell of cochlea': {'Claudius cell': {},\n", + " 'Boettcher cell': {},\n", + " 'border cell of cochlea': {},\n", + " 'interdental cell of cochlea': {},\n", + " 'organ of Corti supporting cell': {'Hensen cell': {},\n", + " 'phalangeal cell': {\"Deiter's cell\": {},\n", + " 'inner phalangeal cell': {}},\n", + " 'pillar cell': {'internal pillar cell of cochlea': {},\n", + " 'external pillar cell of cochlea': {}}}},\n", + " 'supporting cell of vestibular epithelium': {'external supporting cell of vestibular epithelium': {},\n", + " 'external limiting cell of vestibular epithelium': {}}},\n", + " 'hypendymal cell': {}},\n", + " 'lens epithelial cell': {'anterior lens cell': {}},\n", + " 'endothelial cell of high endothelial venule': {},\n", + " 'renal principal cell': {'kidney collecting duct principal cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney papillary duct principal cell': {}},\n", + " 'kidney connecting tubule principal cell': {}},\n", + " 'renal intercalated cell': {'renal beta-intercalated cell': {'kidney collecting duct beta-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}},\n", + " 'renal alpha-intercalated cell': {'kidney collecting duct alpha-intercalated cell': {},\n", + " 'kidney connecting tubule alpha-intercalated cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}},\n", + " 'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}}},\n", + " 'squamous epithelial cell': {'blood vessel endothelial cell': {'endothelial tip cell': {},\n", + " 'vein endothelial cell': {'endothelial cell of umbilical vein': {},\n", + " 'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}},\n", + " 'arcuate vein endothelial cell': {},\n", + " 'interlobulary vein endothelial cell': {},\n", + " 'hindlimb stylopod vein endothelial cell': {},\n", + " 'vein endothelial cell of respiratory system': {}},\n", + " 'retinal blood vessel endothelial cell': {},\n", + " 'endothelial stalk cell': {},\n", + " 'cardiac blood vessel endothelial cell': {'endothelial cell of coronary artery': {}},\n", + " 'endothelial cell of arteriole': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole endothelial cell': {},\n", + " 'endothelial cell of arteriole of lymph node': {}},\n", + " 'endothelial cell of artery': {'aortic endothelial cell': {'thoracic aorta endothelial cell': {}},\n", + " 'arcuate artery endothelial cell': {},\n", + " 'interlobulary artery endothelial cell': {'kidney afferent arteriole endothelial cell': {}},\n", + " 'pulmonary artery endothelial cell': {},\n", + " 'endothelial cell of coronary artery': {},\n", + " 'umbilical artery endothelial cell': {}},\n", + " 'kidney capillary endothelial cell': {'glomerular capillary endothelial cell': {},\n", + " 'peritubular capillary endothelial cell': {'kidney outer medulla peritubular capillary cell': {},\n", + " 'kidney cortex peritubular capillary cell': {}},\n", + " 'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}}},\n", + " 'microvascular endothelial cell': {'capillary endothelial cell': {'glomerular capillary endothelial cell': {},\n", + " 'placental villus capillary endothelial cell': {},\n", + " 'pulmonary capillary endothelial cell': {'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}}},\n", + " 'dermal microvascular endothelial cell': {},\n", + " 'lung microvascular endothelial cell': {'pulmonary capillary endothelial cell': {'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}}},\n", + " 'bladder microvascular endothelial cell': {},\n", + " 'brain microvascular endothelial cell': {},\n", + " 'prostate gland microvascular endothelial cell': {},\n", + " 'ovarian microvascular endothelial cell': {},\n", + " 'mammary microvascular endothelial cell': {},\n", + " 'adipose microvascular endothelial cell': {},\n", + " 'endometrial microvascular endothelial cell': {}},\n", + " 'dermis blood vessel endothelial cell': {'dermal microvascular endothelial cell': {}}},\n", + " 'mesothelial cell': {'littoral cell of liver': {},\n", + " 'seminiferous tubule epithelial cell': {'Sertoli cell': {},\n", + " 'peritubular myoid cell': {}},\n", + " 'mesothelial cell of small intestine': {},\n", + " 'mesothelial cell of colon': {},\n", + " 'mesothelial cell of appendix': {},\n", + " 'mesothelial cell of epicardium': {},\n", + " 'mesothelial cell of dura mater': {},\n", + " 'mesothelial cell of anterior chamber of eye': {},\n", + " 'mesothelial cell of peritoneum': {'mesothelial cell of parietal peritoneum': {},\n", + " 'mesothelial cell of visceral peritoneum': {}},\n", + " 'mesothelial cell of pleura': {'mesothelial cell of parietal pleura': {},\n", + " 'mesothelial cell of visceral pleura': {}}},\n", + " 'peridermal cell': {},\n", + " 'stratified squamous epithelial cell': {'keratinizing barrier epithelial cell': {'keratinocyte': {'Merkel cell': {},\n", + " 'prickle cell': {},\n", + " 'basal cell of epidermis': {'limb basal cell of epidermis': {}},\n", + " 'granular cell of epidermis': {},\n", + " 'squamous cell of epidermis': {},\n", + " 'keratinocyte stem cell': {},\n", + " 'foreskin keratinocyte': {},\n", + " 'hair follicular keratinocyte': {'keratinized cell of hair follicle': {}},\n", + " 'suprabasal keratinocyte': {}},\n", + " 'keratinized cell of the oral mucosa': {},\n", + " 'keratinized squamous cell of esophagus': {},\n", + " 'keratinized epithelial cell of the anal canal': {}},\n", + " 'non keratinizing barrier epithelial cell': {'esophagus non-keratinized squamous epithelial cell': {}},\n", + " 'stratified squamous epithelial cell of anal canal': {'keratinized epithelial cell of the anal canal': {}}},\n", + " 'Caenorhabditis hypodermal cell': {},\n", + " 'corneal epithelial cell': {},\n", + " 'squamous cell of ectocervix': {},\n", + " 'squamous endothelial cell': {},\n", + " 'uterine cervix squamous cell': {},\n", + " 'oral mucosa squamous cell': {},\n", + " 'tonsil squamous cell': {},\n", + " 'vagina squamous cell': {}},\n", + " 'stratified epithelial cell': {'stratified squamous epithelial cell': {'keratinizing barrier epithelial cell': {'keratinocyte': {'Merkel cell': {},\n", + " 'prickle cell': {},\n", + " 'basal cell of epidermis': {'limb basal cell of epidermis': {}},\n", + " 'granular cell of epidermis': {},\n", + " 'squamous cell of epidermis': {},\n", + " 'keratinocyte stem cell': {},\n", + " 'foreskin keratinocyte': {},\n", + " 'hair follicular keratinocyte': {'keratinized cell of hair follicle': {}},\n", + " 'suprabasal keratinocyte': {}},\n", + " 'keratinized cell of the oral mucosa': {},\n", + " 'keratinized squamous cell of esophagus': {},\n", + " 'keratinized epithelial cell of the anal canal': {}},\n", + " 'non keratinizing barrier epithelial cell': {'esophagus non-keratinized squamous epithelial cell': {}},\n", + " 'stratified squamous epithelial cell of anal canal': {'keratinized epithelial cell of the anal canal': {}}},\n", + " 'stratified cuboidal epithelial cell': {}},\n", + " 'epithelial cell of lung': {'brush cell of lobular bronchiole': {},\n", + " 'brush cell of terminal bronchiole': {},\n", + " 'epithelial cell of alveolus of lung': {'pneumocyte': {'type I pneumocyte': {},\n", + " 'type II pneumocyte': {},\n", + " 'fetal pre-type II pneumocyte': {}},\n", + " 'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}},\n", + " 'pulmonary ionocyte': {},\n", + " 'lung goblet cell': {'goblet cell of epithelium of lobar bronchus': {}},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'basal cell of epithelium of terminal bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of respiratory bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of lobular bronchiole': {},\n", + " 'mesothelial cell of visceral pleura': {},\n", + " 'lung endothelial cell': {'lung microvascular endothelial cell': {'pulmonary capillary endothelial cell': {'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}}}},\n", + " 'brush cell of epithelium of lobar bronchus': {}},\n", + " 'epithelial cell of pancreas': {'pancreatic endocrine cell': {'type B pancreatic cell': {},\n", + " 'pancreatic A cell': {},\n", + " 'pancreatic D cell': {},\n", + " 'pancreatic PP cell': {},\n", + " 'pancreatic epsilon cell': {}},\n", + " 'epithelial cell of exocrine pancreas': {'pancreatic ductal cell': {},\n", + " 'pancreatic centro-acinar cell': {},\n", + " 'pancreas exocrine glandular cell': {'pancreatic acinar cell': {},\n", + " 'pancreatic goblet cell': {}}}},\n", + " 'sensory epithelial cell': {'taste receptor cell': {'type III taste bud cell': {},\n", + " 'type II taste cell': {},\n", + " 'type IV taste receptor cell': {},\n", + " 'type V taste receptor cell': {},\n", + " 'type I taste bud cell': {},\n", + " 'taste receptor cell of tongue': {}},\n", + " 'olfactory epithelial cell': {'basal cell of olfactory epithelium': {'olfactory epithelial supporting cell': {},\n", + " 'globose cell of olfactory epithelium': {},\n", + " 'basal proper cell of olfactory epithelium': {}}},\n", + " 'auditory epithelial cell': {'strial intermediate cell': {},\n", + " 'strial marginal cell': {},\n", + " 'strial basal cell': {},\n", + " 'auditory epithelial supporting cell': {'supporting cell of cochlea': {'Claudius cell': {},\n", + " 'Boettcher cell': {},\n", + " 'border cell of cochlea': {},\n", + " 'interdental cell of cochlea': {},\n", + " 'organ of Corti supporting cell': {'Hensen cell': {},\n", + " 'phalangeal cell': {\"Deiter's cell\": {},\n", + " 'inner phalangeal cell': {}},\n", + " 'pillar cell': {'internal pillar cell of cochlea': {},\n", + " 'external pillar cell of cochlea': {}}}},\n", + " 'supporting cell of vestibular epithelium': {'external supporting cell of vestibular epithelium': {},\n", + " 'external limiting cell of vestibular epithelium': {}}}},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}}},\n", + " 'glandular epithelial cell': {'goblet cell': {'respiratory goblet cell': {'nasal mucosa goblet cell': {},\n", + " 'tracheobronchial goblet cell': {'bronchial goblet cell': {'goblet cell of epithelium of lobar bronchus': {}},\n", + " 'tracheal goblet cell': {}},\n", + " 'lung goblet cell': {'goblet cell of epithelium of lobar bronchus': {}}},\n", + " 'intestine goblet cell': {'large intestine goblet cell': {'colon goblet cell': {},\n", + " 'anorectum goblet cell': {},\n", + " 'large intestine crypt goblet cell': {},\n", + " 'appendix goblet cell': {}},\n", + " 'small intestine goblet cell': {'intestinal villus goblet cell': {'duodenal goblet cell': {},\n", + " 'jejunal goblet cell': {},\n", + " 'ileal goblet cell': {}}}},\n", + " 'gastric goblet cell': {'gastric cardiac gland goblet cell': {},\n", + " 'principal gastric gland goblet cell': {},\n", + " 'pyloric gastric gland goblet cell': {}},\n", + " 'pancreatic goblet cell': {},\n", + " 'conjunctiva goblet cell': {}},\n", + " 'enteroendocrine cell': {'type D enteroendocrine cell': {'pancreatic D cell': {},\n", + " 'type D cell of colon': {},\n", + " 'type D cell of small intestine': {},\n", + " 'type D cell of stomach': {}},\n", + " 'enterochromaffin-like cell': {},\n", + " 'type G enteroendocrine cell': {},\n", + " 'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'PP cell': {'pancreatic PP cell': {}, 'PP cell of intestine': {}},\n", + " 'type A enteroendocrine cell': {'pancreatic A cell': {},\n", + " 'type A cell of stomach': {}},\n", + " 'P/D1 enteroendocrine cell': {'P enteroendocrine cell': {},\n", + " 'type D1 enteroendocrine cell': {}},\n", + " 'type I enteroendocrine cell': {},\n", + " 'type L enteroendocrine cell': {},\n", + " 'type N enteroendocrine cell': {},\n", + " 'type S enteroendocrine cell': {},\n", + " 'type TG enteroendocrine cell': {},\n", + " 'type X enteroendocrine cell': {},\n", + " 'pancreatic endocrine cell': {'type B pancreatic cell': {},\n", + " 'pancreatic A cell': {},\n", + " 'pancreatic D cell': {},\n", + " 'pancreatic PP cell': {},\n", + " 'pancreatic epsilon cell': {}},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'intestinal enteroendocrine cell': {'PP cell of intestine': {},\n", + " 'enteroendocrine cell of small intestine': {'type D cell of small intestine': {},\n", + " 'GIP cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}},\n", + " 'enteroendocrine cell of anorectum': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'stomach enteroendocrine cell': {}},\n", + " 'sweat secreting cell': {'dark cell of eccrine sweat gland': {},\n", + " 'clear cell of eccrine sweat gland': {}},\n", + " 'eccrine cell': {'dark cell of eccrine sweat gland': {},\n", + " 'clear cell of eccrine sweat gland': {}},\n", + " 'paneth cell': {'paneth cell of the appendix': {},\n", + " 'paneth cell of colon': {},\n", + " 'paneth cell of anorectum': {},\n", + " 'paneth cell of epithelium of small intestine': {'paneth cell of epithelium proper of small intestine': {},\n", + " 'paneth cell of epithelium of crypt of Lieberkuhn of small intestine': {}}},\n", + " 'acinar cell': {'pancreatic acinar cell': {},\n", + " 'acinar cell of sebaceous gland': {},\n", + " 'acinar cell of salivary gland': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'mucous neck cell': {'mucous neck cell of gastric gland': {}},\n", + " 'epithelial cell of thyroid gland': {'oxyphil cell of thyroid': {},\n", + " 'thyroid follicular cell': {}},\n", + " 'endocrine-paracrine cell of prostate gland': {},\n", + " 'glandular cell of esophagus': {'epithelial cell of esophageal gland proper': {},\n", + " 'epithelial cell of esophageal cardiac gland': {}},\n", + " 'glandular cell of the large intestine': {'paneth cell of anorectum': {},\n", + " 'enteroendocrine cell of anorectum': {},\n", + " 'large intestine goblet cell': {'colon goblet cell': {},\n", + " 'anorectum goblet cell': {},\n", + " 'large intestine crypt goblet cell': {},\n", + " 'appendix goblet cell': {}},\n", + " 'appendix glandular cell': {'paneth cell of the appendix': {},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'appendix goblet cell': {}},\n", + " 'colon glandular cell': {'paneth cell of colon': {},\n", + " 'colon goblet cell': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}}},\n", + " 'rectum glandular cell': {}},\n", + " 'glandular cell of stomach': {'peptic cell': {},\n", + " 'parietal cell': {},\n", + " 'mucous cell of stomach': {'type G enteroendocrine cell': {},\n", + " 'mucous neck cell of gastric gland': {},\n", + " 'surface mucosal cell of stomach': {},\n", + " 'stem cell of gastric gland': {},\n", + " 'gastric goblet cell': {'gastric cardiac gland goblet cell': {},\n", + " 'principal gastric gland goblet cell': {},\n", + " 'pyloric gastric gland goblet cell': {}}},\n", + " 'type A cell of stomach': {},\n", + " 'type D cell of stomach': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'stomach enteroendocrine cell': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'mammary gland glandular cell': {'mammary alveolar cell': {}},\n", + " 'epididymis glandular cell': {},\n", + " 'oviduct glandular cell': {'glandular cell of endometrium': {},\n", + " 'uterine cervix glandular cell': {},\n", + " 'fallopian tube secretory epithelial cell': {}},\n", + " 'gallbladder glandular cell': {},\n", + " 'parathyroid glandular cell': {'epithelial cell of parathyroid gland': {'chief cell of parathyroid gland': {'active chief cell of parathyroid gland': {},\n", + " 'dark chief cell of parathyroid gland': {},\n", + " 'clear chief cell of parathyroid gland': {},\n", + " 'inactive chief cell of parathyoid gland': {},\n", + " 'light chief cell of parathyroid gland': {}},\n", + " 'oxyphil cell of parathyroid gland': {},\n", + " 'transitional cell of parathyroid gland': {}}},\n", + " 'salivary gland glandular cell': {'acinar cell of salivary gland': {}},\n", + " 'seminal vesicle glandular cell': {},\n", + " 'small intestine glandular cell': {'enteroendocrine cell of small intestine': {'type D cell of small intestine': {},\n", + " 'GIP cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'paneth cell of epithelium of small intestine': {'paneth cell of epithelium proper of small intestine': {},\n", + " 'paneth cell of epithelium of crypt of Lieberkuhn of small intestine': {}},\n", + " 'small intestine goblet cell': {'intestinal villus goblet cell': {'duodenal goblet cell': {},\n", + " 'jejunal goblet cell': {},\n", + " 'ileal goblet cell': {}}},\n", + " 'duodenum glandular cell': {'duodenal goblet cell': {}}},\n", + " 'pancreas exocrine glandular cell': {'pancreatic acinar cell': {},\n", + " 'pancreatic goblet cell': {}},\n", + " 'adrenal gland glandular cell': {'cortical cell of adrenal gland': {'type I cell of adrenal cortex': {},\n", + " 'type II cell of adrenal cortex': {},\n", + " 'type III cell of adrenal cortex': {}},\n", + " 'adrenal cortex chromaffin cell': {}}},\n", + " 'hepatocyte': {'periportal region hepatocyte': {},\n", + " 'midzonal region hepatocyte': {},\n", + " 'centrilobular region hepatocyte': {}},\n", + " 'transitional epithelial cell': {'urothelial cell': {'basal cell of urothelium': {},\n", + " 'kidney pelvis urothelial cell': {},\n", + " 'ureter urothelial cell': {},\n", + " 'bladder urothelial cell': {'urothelial cell of trigone of urinary bladder': {}},\n", + " 'urethra urothelial cell': {},\n", + " 'intermediate cell of urothelium': {},\n", + " 'umbrella cell of urothelium': {}}},\n", + " 'arcade cell': {},\n", + " 'syncytial epithelial cell': {},\n", + " 'follicular epithelial cell': {'follicle cell of egg chamber': {'border follicle cell': {},\n", + " 'centripetally migrating follicle cell': {},\n", + " 'interfollicle cell': {}},\n", + " 'eggshell secreting cell': {},\n", + " 'follicular cell of ovary': {'granulosa cell': {},\n", + " 'cumulus cell': {'corona radiata cell': {}},\n", + " 'primary follicular cell of ovary': {},\n", + " 'secondary follicular cell of ovary': {}}},\n", + " 'cuticle secreting cell': {'socket cell (sensu Nematoda)': {},\n", + " 'pore cell': {}},\n", + " 'fenestrated cell': {'glomerular endothelial cell': {'glomerular capillary endothelial cell': {}}},\n", + " 'leading edge cell': {},\n", + " 'vestibular dark cell': {},\n", + " 'endo-epithelial cell': {'taste receptor cell': {'type III taste bud cell': {},\n", + " 'type II taste cell': {},\n", + " 'type IV taste receptor cell': {},\n", + " 'type V taste receptor cell': {},\n", + " 'type I taste bud cell': {},\n", + " 'taste receptor cell of tongue': {}},\n", + " 'epithelial cell of uterus': {'columnar cell of endocervix': {},\n", + " 'squamous cell of ectocervix': {}},\n", + " 'internal epithelial cell of tympanic membrane': {},\n", + " 'oncocyte': {'oxyphil cell of parathyroid gland': {},\n", + " 'oxyphil cell of thyroid': {}},\n", + " 'brush cell': {'brush cell of trachebronchial tree': {'brush cell of lobular bronchiole': {},\n", + " 'brush cell of terminal bronchiole': {},\n", + " 'brush cell of trachea': {},\n", + " 'brush cell of bronchus': {'brush cell of epithelium of lobar bronchus': {}}},\n", + " 'intestinal tuft cell': {'brush cell of epithelium proper of large intestine': {'tuft cell of appendix': {},\n", + " 'tuft cell of colon': {},\n", + " 'tuft cell of anorectum': {}},\n", + " 'tuft cell of small intestine': {}}},\n", + " 'epithelial cell of prostate': {'epithelial cell of prostatic duct': {},\n", + " 'epithelial cell of prostatic acinus': {'basal cell of prostatic acinus': {},\n", + " 'luminal cell of prostatic acinus': {}},\n", + " 'luminal cell of prostate epithelium': {'luminal cell of prostatic acinus': {},\n", + " 'luminal epithelial cell of prostatic duct': {}},\n", + " 'basal cell of prostate epithelium': {'basal cell of prostatic acinus': {},\n", + " 'basal epithelial cell of prostatic duct': {},\n", + " 'prostate stem cell': {}}},\n", + " 'epithelial cell of alimentary canal': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'M cell of gut': {'microfold cell of epithelium of small intestine': {'microfold cell of epithelium of intestinal villus': {'microfold cell of epithelium proper of duodenum': {}},\n", + " 'microfold cell of epithelium proper of small intestine': {},\n", + " 'microfold cell of epithelium proper of jejunum': {},\n", + " 'microfold cell of epithelium proper of ileum': {}},\n", + " 'microfold cell of epithelium proper of large intestine': {'microfold cell of epithelium proper of anorectum': {},\n", + " 'microfold cell of epithelium proper of appendix': {}}},\n", + " 'epithelial cell of Malassez': {},\n", + " 'keratinized cell of the oral mucosa': {},\n", + " 'epithelial cell of stomach': {'foveolar cell of stomach': {},\n", + " 'glandular cell of stomach': {'peptic cell': {},\n", + " 'parietal cell': {},\n", + " 'mucous cell of stomach': {'type G enteroendocrine cell': {},\n", + " 'mucous neck cell of gastric gland': {},\n", + " 'surface mucosal cell of stomach': {},\n", + " 'stem cell of gastric gland': {},\n", + " 'gastric goblet cell': {'gastric cardiac gland goblet cell': {},\n", + " 'principal gastric gland goblet cell': {},\n", + " 'pyloric gastric gland goblet cell': {}}},\n", + " 'type A cell of stomach': {},\n", + " 'type D cell of stomach': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'stomach enteroendocrine cell': {}}},\n", + " 'epithelial cell of esophagus': {'keratinized squamous cell of esophagus': {},\n", + " 'epithelial cell of stratum corneum of esophageal epithelium': {'nonkeratinized cell of stratum corneum of esophageal epithelium': {}},\n", + " 'epithelial cell of stratum spinosum of esophageal epithelium': {},\n", + " 'glandular cell of esophagus': {'epithelial cell of esophageal gland proper': {},\n", + " 'epithelial cell of esophageal cardiac gland': {}},\n", + " 'esophagus non-keratinized squamous epithelial cell': {},\n", + " 'ciliated epithelial cell of esophagus': {}},\n", + " 'intestinal epithelial cell': {'paneth cell': {'paneth cell of the appendix': {},\n", + " 'paneth cell of colon': {},\n", + " 'paneth cell of anorectum': {},\n", + " 'paneth cell of epithelium of small intestine': {'paneth cell of epithelium proper of small intestine': {},\n", + " 'paneth cell of epithelium of crypt of Lieberkuhn of small intestine': {}}},\n", + " 'enterocyte': {'enterocyte of epithelium of large intestine': {'enterocyte of epithelium proper of large intestine': {},\n", + " 'enterocyte of colon': {}},\n", + " 'enterocyte of appendix': {},\n", + " 'enterocyte of anorectum': {},\n", + " 'vacuolated fetal-type enterocyte': {},\n", + " 'lysosome-rich enterocyte': {},\n", + " 'enterocyte of epithelium of small intestine': {'enterocyte of epithelium of intestinal villus': {},\n", + " 'enterocyte of epithelium of crypt of Lieberkuhn of small intestine': {},\n", + " 'enterocyte of epithelium proper of small intestine': {'enterocyte of epithelium proper of duodenum': {},\n", + " 'enterocyte of epithelium proper of jejunum': {},\n", + " 'enterocyte of epithelium proper of ileum': {}}},\n", + " 'enterocyte of epithelium of duodenal gland': {}},\n", + " 'intestinal crypt stem cell': {'intestinal crypt stem cell of large intestine': {'intestinal crypt stem cell of appendix': {}},\n", + " 'intestinal crypt stem cell of small intestine': {},\n", + " 'intestinal crypt stem cell of colon': {},\n", + " 'intestinal crypt stem cell of anorectum': {}},\n", + " 'epithelial cell of large intestine': {'enterocyte of epithelium of large intestine': {'enterocyte of epithelium proper of large intestine': {},\n", + " 'enterocyte of colon': {}},\n", + " 'brush cell of epithelium proper of large intestine': {'tuft cell of appendix': {},\n", + " 'tuft cell of colon': {},\n", + " 'tuft cell of anorectum': {}},\n", + " 'epithelial cell of anal column': {'nonkeratinized epithelial cell of anal column': {'nonkeratinized epithelial cell of inferior part of anal canal': {}},\n", + " 'keratinized epithelial cell of the anal canal': {},\n", + " 'epithelial cell of wall of inferior part of anal canal': {'nonkeratinized epithelial cell of inferior part of anal canal': {}}},\n", + " 'glandular cell of the large intestine': {'paneth cell of anorectum': {},\n", + " 'enteroendocrine cell of anorectum': {},\n", + " 'large intestine goblet cell': {'colon goblet cell': {},\n", + " 'anorectum goblet cell': {},\n", + " 'large intestine crypt goblet cell': {},\n", + " 'appendix goblet cell': {}},\n", + " 'appendix glandular cell': {'paneth cell of the appendix': {},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'appendix goblet cell': {}},\n", + " 'colon glandular cell': {'paneth cell of colon': {},\n", + " 'colon goblet cell': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}}},\n", + " 'rectum glandular cell': {}},\n", + " 'intestinal crypt stem cell of large intestine': {'intestinal crypt stem cell of appendix': {}},\n", + " 'enterocyte of anorectum': {},\n", + " 'intestinal crypt stem cell of anorectum': {},\n", + " 'stratified squamous epithelial cell of anal canal': {'keratinized epithelial cell of the anal canal': {}},\n", + " 'colon epithelial cell': {'mesothelial cell of colon': {},\n", + " 'tuft cell of colon': {},\n", + " 'intestinal crypt stem cell of colon': {},\n", + " 'enterocyte of colon': {},\n", + " 'colon endothelial cell': {},\n", + " 'colon glandular cell': {'paneth cell of colon': {},\n", + " 'colon goblet cell': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}}}},\n", + " 'microfold cell of epithelium proper of large intestine': {'microfold cell of epithelium proper of anorectum': {},\n", + " 'microfold cell of epithelium proper of appendix': {}},\n", + " 'epithelial cell of appendix': {'tuft cell of appendix': {},\n", + " 'enterocyte of appendix': {},\n", + " 'intestinal crypt stem cell of appendix': {},\n", + " 'mesothelial cell of appendix': {},\n", + " 'microfold cell of epithelium proper of appendix': {},\n", + " 'appendix glandular cell': {'paneth cell of the appendix': {},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'appendix goblet cell': {}}}},\n", + " 'epithelial cell of small intestine': {'intestinal crypt stem cell of small intestine': {},\n", + " 'mesothelial cell of small intestine': {},\n", + " 'vacuolated fetal-type enterocyte': {},\n", + " 'tuft cell of small intestine': {},\n", + " 'enterocyte of epithelium of small intestine': {'enterocyte of epithelium of intestinal villus': {},\n", + " 'enterocyte of epithelium of crypt of Lieberkuhn of small intestine': {},\n", + " 'enterocyte of epithelium proper of small intestine': {'enterocyte of epithelium proper of duodenum': {},\n", + " 'enterocyte of epithelium proper of jejunum': {},\n", + " 'enterocyte of epithelium proper of ileum': {}}},\n", + " 'enterocyte of epithelium of duodenal gland': {},\n", + " 'microfold cell of epithelium of small intestine': {'microfold cell of epithelium of intestinal villus': {'microfold cell of epithelium proper of duodenum': {}},\n", + " 'microfold cell of epithelium proper of small intestine': {},\n", + " 'microfold cell of epithelium proper of jejunum': {},\n", + " 'microfold cell of epithelium proper of ileum': {}},\n", + " \"endothelial cell of Peyer's patch\": {},\n", + " 'small intestine glandular cell': {'enteroendocrine cell of small intestine': {'type D cell of small intestine': {},\n", + " 'GIP cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'paneth cell of epithelium of small intestine': {'paneth cell of epithelium proper of small intestine': {},\n", + " 'paneth cell of epithelium of crypt of Lieberkuhn of small intestine': {}},\n", + " 'small intestine goblet cell': {'intestinal villus goblet cell': {'duodenal goblet cell': {},\n", + " 'jejunal goblet cell': {},\n", + " 'ileal goblet cell': {}}},\n", + " 'duodenum glandular cell': {'duodenal goblet cell': {}}}},\n", + " 'intestine goblet cell': {'large intestine goblet cell': {'colon goblet cell': {},\n", + " 'anorectum goblet cell': {},\n", + " 'large intestine crypt goblet cell': {},\n", + " 'appendix goblet cell': {}},\n", + " 'small intestine goblet cell': {'intestinal villus goblet cell': {'duodenal goblet cell': {},\n", + " 'jejunal goblet cell': {},\n", + " 'ileal goblet cell': {}}}},\n", + " 'intestinal tuft cell': {'brush cell of epithelium proper of large intestine': {'tuft cell of appendix': {},\n", + " 'tuft cell of colon': {},\n", + " 'tuft cell of anorectum': {}},\n", + " 'tuft cell of small intestine': {}},\n", + " 'intestinal enteroendocrine cell': {'PP cell of intestine': {},\n", + " 'enteroendocrine cell of small intestine': {'type D cell of small intestine': {},\n", + " 'GIP cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}},\n", + " 'enteroendocrine cell of anorectum': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}}},\n", + " 'gingival epithelial cell': {},\n", + " 'nasopharyngeal epithelial cell': {},\n", + " 'oral mucosa squamous cell': {},\n", + " 'tonsil squamous cell': {},\n", + " 'salivary gland glandular cell': {'acinar cell of salivary gland': {}},\n", + " 'taste receptor cell of tongue': {}},\n", + " 'epithelial cell of thyroid gland': {'oxyphil cell of thyroid': {},\n", + " 'thyroid follicular cell': {}},\n", + " 'epithelial cell of parathyroid gland': {'chief cell of parathyroid gland': {'active chief cell of parathyroid gland': {},\n", + " 'dark chief cell of parathyroid gland': {},\n", + " 'clear chief cell of parathyroid gland': {},\n", + " 'inactive chief cell of parathyoid gland': {},\n", + " 'light chief cell of parathyroid gland': {}},\n", + " 'oxyphil cell of parathyroid gland': {},\n", + " 'transitional cell of parathyroid gland': {}},\n", + " 'endothelial cell of viscerocranial mucosa': {'buccal mucosa cell': {'keratinized cell of the oral mucosa': {}},\n", + " 'endo-epithelial cell of tympanic part of viscerocranial mucosa': {},\n", + " 'endo-epithelial cell of pharyngotympanic part of viscerocranial mucosa': {}},\n", + " 'epithelial cell of thymus': {'cortical thymic epithelial cell': {'type-1 epithelial cell of thymus': {},\n", + " 'type-4 epithelial cell of thymus': {},\n", + " 'type-3 epithelial cell of thymus': {},\n", + " 'type-2 epithelial cell of thymus': {},\n", + " 'subcapsular thymic epithelial cell': {}},\n", + " 'medullary thymic epithelial cell': {'type-6 epithelial cell of thymus': {},\n", + " 'type-4 epithelial cell of thymus': {},\n", + " 'type-5 epithelial cell of thymus': {},\n", + " 'type-7 epithelial cell of thymus': {},\n", + " 'medullary thymic epithelial cell type 1': {},\n", + " 'medullary thymic epithelial cell type 2': {},\n", + " 'medullary thymic epithelial cell type 3': {},\n", + " 'medullary thymic epithelial cell type 4': {},\n", + " 'myo-medullary thymic epithelial cell': {},\n", + " 'neuro-medullary thymic epithelial cell': {}},\n", + " 'corticomedullary thymic epithelial cell': {},\n", + " 'thymic nurse cell': {}},\n", + " 'respiratory epithelial cell': {'epithelial cell of upper respiratory tract': {'nasopharyngeal epithelial cell': {}},\n", + " 'epithelial cell of lower respiratory tract': {'epithelial cell of tracheobronchial tree': {'club cell': {},\n", + " 'tracheal epithelial cell': {'brush cell of trachea': {},\n", + " 'tracheal goblet cell': {},\n", + " 'basal cell of epithelium of trachea': {},\n", + " 'dense-core granulated cell of epithelium of trachea': {},\n", + " 'mucus secreting cell of trachea gland': {},\n", + " 'myoepithelial cell of trachea gland': {}},\n", + " 'brush cell of trachebronchial tree': {'brush cell of lobular bronchiole': {},\n", + " 'brush cell of terminal bronchiole': {},\n", + " 'brush cell of trachea': {},\n", + " 'brush cell of bronchus': {'brush cell of epithelium of lobar bronchus': {}}},\n", + " 'ciliated columnar cell of tracheobronchial tree': {'ciliated cell of the bronchus': {}},\n", + " 'intermediate epitheliocyte': {},\n", + " 'bronchial epithelial cell': {'brush cell of bronchus': {'brush cell of epithelium of lobar bronchus': {}},\n", + " 'undifferentiated cell of bronchus epithelium': {},\n", + " 'ciliated cell of the bronchus': {},\n", + " 'bronchial goblet cell': {'goblet cell of epithelium of lobar bronchus': {}},\n", + " 'basal cell of epithelium of bronchus': {},\n", + " 'myoepithelial cell of bronchus submucosal gland': {},\n", + " 'neuroendocrine cell of epithelium of lobar bronchus': {},\n", + " 'mucus secreting cell of bronchus submucosal gland': {}},\n", + " 'basal epithelial cell of tracheobronchial tree': {'basal cell of epithelium of bronchus': {}},\n", + " 'tracheobronchial goblet cell': {'bronchial goblet cell': {'goblet cell of epithelium of lobar bronchus': {}},\n", + " 'tracheal goblet cell': {}},\n", + " 'basal cell of epithelium of terminal bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of respiratory bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of lobular bronchiole': {},\n", + " 'mucus secreting cell of tracheobronchial tree submucosal gland': {'mucus secreting cell of trachea gland': {},\n", + " 'mucus secreting cell of bronchus submucosal gland': {}}}},\n", + " 'respiratory basal cell': {'basal cell of epithelium of trachea': {},\n", + " 'basal cell of epithelium of bronchus': {},\n", + " 'basal cell of epithelium of terminal bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of respiratory bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of lobular bronchiole': {}},\n", + " 'respiratory hillock cell': {},\n", + " 'deuterosomal cell': {},\n", + " 'respiratory suprabasal cell': {}}},\n", + " 'ecto-epithelial cell': {'ameloblast': {},\n", + " 'keratinizing barrier epithelial cell': {'keratinocyte': {'Merkel cell': {},\n", + " 'prickle cell': {},\n", + " 'basal cell of epidermis': {'limb basal cell of epidermis': {}},\n", + " 'granular cell of epidermis': {},\n", + " 'squamous cell of epidermis': {},\n", + " 'keratinocyte stem cell': {},\n", + " 'foreskin keratinocyte': {},\n", + " 'hair follicular keratinocyte': {'keratinized cell of hair follicle': {}},\n", + " 'suprabasal keratinocyte': {}},\n", + " 'keratinized cell of the oral mucosa': {},\n", + " 'keratinized squamous cell of esophagus': {},\n", + " 'keratinized epithelial cell of the anal canal': {}},\n", + " 'neurecto-epithelial cell': {'odontoblast': {'non-terminally differentiated odontoblast': {},\n", + " 'terminally differentiated odontoblast': {}},\n", + " 'ependymal cell': {'choroid plexus epithelial cell': {}},\n", + " 'corneal endothelial cell': {},\n", + " 'neuroendocrine cell': {'amine precursor uptake and decarboxylation cell': {'chromaffin cell': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'interrenal chromaffin cell': {'interrenal norepinephrine type cell': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'chromaffin cell of paraganglion': {'chromaffin cell of paraaortic body': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}}},\n", + " 'paraganglial type 1 cell': {},\n", + " 'Feyrter cell': {'dense-core granulated cell of epithelium of trachea': {}},\n", + " 'magnocellular neurosecretory cell': {'oxytocin-secreting magnocellular cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'gonadotropin-releasing hormone neuron': {},\n", + " 'prostate neuroendocrine cell': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'parvocellular neurosecretory cell': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'Merkel cell': {},\n", + " 'epidermal cell (sensu Arthropoda)': {'tormogen cell': {},\n", + " 'trichogen cell': {}},\n", + " 'epidermoblast': {},\n", + " 'pigmented epithelial cell': {'pigmented ciliary epithelial cell': {}},\n", + " 'parafollicular cell': {},\n", + " 'pinealocyte': {'type I pinealocyte': {}, 'type II pinealocyte': {}},\n", + " 'cerebrospinal fluid secreting cell': {},\n", + " 'interstitial cell of Cajal': {},\n", + " 'olfactory epithelial cell': {'basal cell of olfactory epithelium': {'olfactory epithelial supporting cell': {},\n", + " 'globose cell of olfactory epithelium': {},\n", + " 'basal proper cell of olfactory epithelium': {}}},\n", + " 'folliculostellate cell of pars distalis of adenohypophysis': {},\n", + " 'interstitial cell of pineal gland': {},\n", + " 'supporting cell of carotid body': {'type II cell of carotid body': {}},\n", + " 'type I cell of carotid body': {},\n", + " 'non-pigmented ciliary epithelial cell': {},\n", + " 'meningothelial cell': {},\n", + " 'strial intermediate cell': {},\n", + " 'auditory epithelial supporting cell': {'supporting cell of cochlea': {'Claudius cell': {},\n", + " 'Boettcher cell': {},\n", + " 'border cell of cochlea': {},\n", + " 'interdental cell of cochlea': {},\n", + " 'organ of Corti supporting cell': {'Hensen cell': {},\n", + " 'phalangeal cell': {\"Deiter's cell\": {},\n", + " 'inner phalangeal cell': {}},\n", + " 'pillar cell': {'internal pillar cell of cochlea': {},\n", + " 'external pillar cell of cochlea': {}}}},\n", + " 'supporting cell of vestibular epithelium': {'external supporting cell of vestibular epithelium': {},\n", + " 'external limiting cell of vestibular epithelium': {}}},\n", + " 'hypendymal cell': {}},\n", + " 'general ecto-epithelial cell': {'epidermal cell': {'keratinocyte': {'Merkel cell': {},\n", + " 'prickle cell': {},\n", + " 'basal cell of epidermis': {'limb basal cell of epidermis': {}},\n", + " 'granular cell of epidermis': {},\n", + " 'squamous cell of epidermis': {},\n", + " 'keratinocyte stem cell': {},\n", + " 'foreskin keratinocyte': {},\n", + " 'hair follicular keratinocyte': {'keratinized cell of hair follicle': {}},\n", + " 'suprabasal keratinocyte': {}},\n", + " 'epidermal cell (sensu Arthropoda)': {'tormogen cell': {},\n", + " 'trichogen cell': {}},\n", + " 'stratum granulosum cell': {},\n", + " 'nonkeratinized cell of epidermis': {},\n", + " 'inner root sheath cell': {},\n", + " 'outer root sheath cell': {},\n", + " 'hair germinal matrix cell': {},\n", + " 'epithelial cell of sweat gland': {'acinar cell of sebaceous gland': {},\n", + " 'dark cell of eccrine sweat gland': {},\n", + " 'clear cell of eccrine sweat gland': {},\n", + " 'myoepithelial cell of sweat gland': {}}},\n", + " 'corneal epithelial cell': {},\n", + " 'dental pulp cell': {'odontoblast': {'non-terminally differentiated odontoblast': {},\n", + " 'terminally differentiated odontoblast': {}},\n", + " 'dental pulp stem cell': {}},\n", + " 'external epithelial cell of tympanic membrane': {'basal external epithelial cell of tympanic membrane': {},\n", + " 'superficial external epithelial cell of tympanic membrane': {}},\n", + " 'epithelial cell of Malassez': {},\n", + " 'ecto-epithelial cell of viscerocranial mucosa': {},\n", + " 'epithelial cell of skin gland': {'epithelial cell of sweat gland': {'acinar cell of sebaceous gland': {},\n", + " 'dark cell of eccrine sweat gland': {},\n", + " 'clear cell of eccrine sweat gland': {},\n", + " 'myoepithelial cell of sweat gland': {}}},\n", + " 'endocrine-paracrine cell of prostate gland': {},\n", + " 'mammary alveolar cell': {}}},\n", + " 'meso-epithelial cell': {'non-branched duct epithelial cell': {'epithelial cell of prostatic duct': {},\n", + " 'epithelial cell of lacrimal duct': {'epithelial cell of nasolacrimal duct': {}},\n", + " 'kidney collecting duct epithelial cell': {'kidney collecting duct principal cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney papillary duct principal cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}}}},\n", + " 'mesothelial cell': {'littoral cell of liver': {},\n", + " 'seminiferous tubule epithelial cell': {'Sertoli cell': {},\n", + " 'peritubular myoid cell': {}},\n", + " 'mesothelial cell of small intestine': {},\n", + " 'mesothelial cell of colon': {},\n", + " 'mesothelial cell of appendix': {},\n", + " 'mesothelial cell of epicardium': {},\n", + " 'mesothelial cell of dura mater': {},\n", + " 'mesothelial cell of anterior chamber of eye': {},\n", + " 'mesothelial cell of peritoneum': {'mesothelial cell of parietal peritoneum': {},\n", + " 'mesothelial cell of visceral peritoneum': {}},\n", + " 'mesothelial cell of pleura': {'mesothelial cell of parietal pleura': {},\n", + " 'mesothelial cell of visceral pleura': {}}},\n", + " 'endothelial cell': {'gut endothelial cell': {},\n", + " 'corneal endothelial cell': {},\n", + " 'endothelial cell of vascular tree': {'blood vessel endothelial cell': {'endothelial tip cell': {},\n", + " 'vein endothelial cell': {'endothelial cell of umbilical vein': {},\n", + " 'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}},\n", + " 'arcuate vein endothelial cell': {},\n", + " 'interlobulary vein endothelial cell': {},\n", + " 'hindlimb stylopod vein endothelial cell': {},\n", + " 'vein endothelial cell of respiratory system': {}},\n", + " 'retinal blood vessel endothelial cell': {},\n", + " 'endothelial stalk cell': {},\n", + " 'cardiac blood vessel endothelial cell': {'endothelial cell of coronary artery': {}},\n", + " 'endothelial cell of arteriole': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole endothelial cell': {},\n", + " 'endothelial cell of arteriole of lymph node': {}},\n", + " 'endothelial cell of artery': {'aortic endothelial cell': {'thoracic aorta endothelial cell': {}},\n", + " 'arcuate artery endothelial cell': {},\n", + " 'interlobulary artery endothelial cell': {'kidney afferent arteriole endothelial cell': {}},\n", + " 'pulmonary artery endothelial cell': {},\n", + " 'endothelial cell of coronary artery': {},\n", + " 'umbilical artery endothelial cell': {}},\n", + " 'kidney capillary endothelial cell': {'glomerular capillary endothelial cell': {},\n", + " 'peritubular capillary endothelial cell': {'kidney outer medulla peritubular capillary cell': {},\n", + " 'kidney cortex peritubular capillary cell': {}},\n", + " 'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}}},\n", + " 'microvascular endothelial cell': {'capillary endothelial cell': {'glomerular capillary endothelial cell': {},\n", + " 'placental villus capillary endothelial cell': {},\n", + " 'pulmonary capillary endothelial cell': {'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}}},\n", + " 'dermal microvascular endothelial cell': {},\n", + " 'lung microvascular endothelial cell': {'pulmonary capillary endothelial cell': {'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}}},\n", + " 'bladder microvascular endothelial cell': {},\n", + " 'brain microvascular endothelial cell': {},\n", + " 'prostate gland microvascular endothelial cell': {},\n", + " 'ovarian microvascular endothelial cell': {},\n", + " 'mammary microvascular endothelial cell': {},\n", + " 'adipose microvascular endothelial cell': {},\n", + " 'endometrial microvascular endothelial cell': {}},\n", + " 'dermis blood vessel endothelial cell': {'dermal microvascular endothelial cell': {}}},\n", + " 'endothelial cell of lymphatic vessel': {'lymphatic endothelial cell of subcapsular sinus ceiling': {},\n", + " 'lymphatic endothelial cell of subcapsular sinus floor': {},\n", + " 'lymphatic endothelial cell of trabecula': {},\n", + " 'lymphatic endothelial cell of medulla ceiling': {},\n", + " 'dermis lymphatic vessel endothelial cell': {'dermis microvascular lymphatic vessel endothelial cell': {}}},\n", + " 'endothelial cell of venule': {'endothelial cell of high endothelial venule': {},\n", + " 'squamous endothelial cell': {}},\n", + " 'lung endothelial cell': {'lung microvascular endothelial cell': {'pulmonary capillary endothelial cell': {'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}}}}},\n", + " 'glomerular endothelial cell': {'glomerular capillary endothelial cell': {}},\n", + " 'endothelial cell of sinusoid': {'endothelial cell of venous sinus of spleen': {'endothelial cell of venous sinus of red pulp of spleen': {}},\n", + " 'endothelial cell of hepatic sinusoid': {'endothelial cell of periportal hepatic sinusoid': {},\n", + " 'endothelial cell of pericentral hepatic sinusoid': {}}},\n", + " 'circulating endothelial cell': {},\n", + " 'trabecular meshwork cell': {},\n", + " 'endothelial cell of respiratory system lymphatic vessel': {},\n", + " 'endothelial cell of placenta': {'placental villus capillary endothelial cell': {}},\n", + " 'endothelial cell of hepatic portal vein': {},\n", + " 'endothelial cell of uterus': {'endometrial microvascular endothelial cell': {}},\n", + " 'lymph node lymphatic vessel endothelial cell': {'lymphatic endothelial cell of subcapsular sinus ceiling': {},\n", + " 'lymphatic endothelial cell of subcapsular sinus floor': {},\n", + " 'lymphatic endothelial cell of trabecula': {},\n", + " 'lymphatic endothelial cell of medulla ceiling': {}},\n", + " 'cardiac endothelial cell': {'endocardial cell': {},\n", + " 'cardiac blood vessel endothelial cell': {'endothelial cell of coronary artery': {}},\n", + " 'valve endothelial cell': {}},\n", + " \"endothelial cell of Peyer's patch\": {},\n", + " 'ureter adventitial cell': {'fibrocyte of adventitia of ureter': {}},\n", + " 'colon endothelial cell': {},\n", + " 'cerebral cortex endothelial cell': {},\n", + " 'splenic endothelial cell': {'endothelial cell of venous sinus of red pulp of spleen': {}},\n", + " 'endothelial cell of venule of lymph node': {},\n", + " 'endothelial cell of efferent lymphatic vessel': {}},\n", + " 'myoepithelial cell': {'myoepithelial cell of mammary gland': {'myoepithelial cell of lactiferous alveolus': {},\n", + " 'myoepithelial cell of lactiferous duct': {},\n", + " 'myoepithelial cell of acinus of lactiferous gland': {}},\n", + " 'peritubular myoid cell': {},\n", + " 'myoepithelial cell of intralobular lactiferous duct': {},\n", + " 'myoepithelial cell of sweat gland': {},\n", + " 'myoepithelial cell of terminal lactiferous duct': {},\n", + " 'myoepithelial cell of dilator pupillae': {},\n", + " 'myoepithelial cell of main lactiferous duct': {},\n", + " 'myoepithelial cell of primary lactiferous duct': {},\n", + " 'myoepithelial cell of secondary lactiferous duct': {},\n", + " 'myoepithelial cell of tertiary lactiferous duct': {},\n", + " 'myoepithelial cell of quarternary lactiferous duct': {},\n", + " 'myoepithelial cell of bronchus submucosal gland': {},\n", + " 'myoepithelial cell of trachea gland': {}},\n", + " 'synovial cell': {'type B synovial cell': {},\n", + " 'type A synovial cell': {}},\n", + " 'cortical cell of adrenal gland': {'type I cell of adrenal cortex': {},\n", + " 'type II cell of adrenal cortex': {},\n", + " 'type III cell of adrenal cortex': {}},\n", + " 'endosteal cell': {},\n", + " 'follicular cell of ovary': {'granulosa cell': {},\n", + " 'cumulus cell': {'corona radiata cell': {}},\n", + " 'primary follicular cell of ovary': {},\n", + " 'secondary follicular cell of ovary': {}},\n", + " 'primitive cardiac myocyte': {},\n", + " 'epithelial cell of distal tubule': {'kidney distal convoluted tubule epithelial cell': {'epithelial cell of early distal convoluted tubule': {},\n", + " 'epithelial cell of late distal convoluted tubule': {}},\n", + " 'macula densa epithelial cell': {},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}},\n", + " 'renal intercalated cell': {'renal beta-intercalated cell': {'kidney collecting duct beta-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}},\n", + " 'renal alpha-intercalated cell': {'kidney collecting duct alpha-intercalated cell': {},\n", + " 'kidney connecting tubule alpha-intercalated cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}},\n", + " 'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}},\n", + " 'vertebrate lens cell': {'lens epithelial cell': {'anterior lens cell': {}},\n", + " 'lens fiber cell': {'secondary lens fiber': {'non-nucleated secondary lens fiber': {},\n", + " 'nucleated secondary lens fiber': {}},\n", + " 'primary lens fiber': {}}},\n", + " 'mammary gland epithelial cell': {'myoepithelial cell of mammary gland': {'myoepithelial cell of lactiferous alveolus': {},\n", + " 'myoepithelial cell of lactiferous duct': {},\n", + " 'myoepithelial cell of acinus of lactiferous gland': {}},\n", + " 'luminal epithelial cell of mammary gland': {'luminal cell of acinus of lactiferous gland': {},\n", + " 'luminal cell of lactiferous duct': {'luminal cell of lactiferous terminal ductal lobular unit': {}}},\n", + " 'mammary gland glandular cell': {'mammary alveolar cell': {}}},\n", + " 'kidney epithelial cell': {'interrenal epithelial cell': {},\n", + " 'renal cortical epithelial cell': {'kidney corpuscule cell': {'glomerular cell': {'glomerular endothelial cell': {'glomerular capillary endothelial cell': {}},\n", + " 'kidney glomerular epithelial cell': {'epithelial cell of glomerular capsule': {'podocyte': {'mesonephric podocyte': {},\n", + " 'metanephric podocyte': {},\n", + " 'pronephric podocyte': {}},\n", + " 'parietal epithelial cell': {}},\n", + " 'glomerular capillary endothelial cell': {}},\n", + " 'glomerular mesangial cell': {}},\n", + " 'kidney afferent arteriole cell': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {}},\n", + " 'kidney efferent arteriole cell': {'kidney efferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}}},\n", + " 'kidney cortex tubule cell': {'epithelial cell of distal tubule': {'kidney distal convoluted tubule epithelial cell': {'epithelial cell of early distal convoluted tubule': {},\n", + " 'epithelial cell of late distal convoluted tubule': {}},\n", + " 'macula densa epithelial cell': {},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}},\n", + " 'kidney connecting tubule epithelial cell': {'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}}},\n", + " 'kidney cortex interstitial cell': {'renal cortical fibroblast': {}},\n", + " 'kidney cortex collecting duct principal cell': {},\n", + " 'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney blood vessel cell': {'kidney arterial blood vessel cell': {'kidney afferent arteriole cell': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {}},\n", + " 'kidney efferent arteriole cell': {'kidney efferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney cortex artery cell': {'arcuate artery cell': {'arcuate artery endothelial cell': {},\n", + " 'arcuate artery smooth muscle cell': {}},\n", + " 'interlobular artery cell': {'interlobulary artery endothelial cell': {'kidney afferent arteriole endothelial cell': {}},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}}},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}}},\n", + " 'kidney capillary endothelial cell': {'glomerular capillary endothelial cell': {},\n", + " 'peritubular capillary endothelial cell': {'kidney outer medulla peritubular capillary cell': {},\n", + " 'kidney cortex peritubular capillary cell': {}},\n", + " 'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}}},\n", + " 'kidney venous blood vessel cell': {'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}},\n", + " 'kidney cortex vein cell': {'arcuate vein cell': {'arcuate vein endothelial cell': {},\n", + " 'arcuate vein smooth muscle cell': {}},\n", + " 'interlobular vein cell': {'interlobulary vein endothelial cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}}}},\n", + " 'renal principal cell': {'kidney collecting duct principal cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney papillary duct principal cell': {}},\n", + " 'kidney connecting tubule principal cell': {}},\n", + " 'epithelial cell of nephron': {'renal intercalated cell': {'renal beta-intercalated cell': {'kidney collecting duct beta-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}},\n", + " 'renal alpha-intercalated cell': {'kidney collecting duct alpha-intercalated cell': {},\n", + " 'kidney connecting tubule alpha-intercalated cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}},\n", + " 'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}},\n", + " 'mesonephric nephron tubule epithelial cell': {},\n", + " 'pronephric nephron tubule epithelial cell': {},\n", + " 'metanephric nephron tubule epithelial cell': {},\n", + " 'kidney collecting duct epithelial cell': {'kidney collecting duct principal cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney papillary duct principal cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}}},\n", + " 'nephron tubule epithelial cell': {'epithelial cell of distal tubule': {'kidney distal convoluted tubule epithelial cell': {'epithelial cell of early distal convoluted tubule': {},\n", + " 'epithelial cell of late distal convoluted tubule': {}},\n", + " 'macula densa epithelial cell': {},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}},\n", + " 'kidney connecting tubule epithelial cell': {'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}},\n", + " 'kidney loop of Henle epithelial cell': {'epithelial cell of intermediate tubule': {'kidney loop of Henle thin descending limb epithelial cell': {'kidney loop of Henle short descending thin limb epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb outer medulla epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb inner medulla epithelial cell': {}}},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle descending limb epithelial cell': {'kidney proximal straight tubule epithelial cell': {},\n", + " 'kidney loop of Henle thin descending limb epithelial cell': {'kidney loop of Henle short descending thin limb epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb outer medulla epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb inner medulla epithelial cell': {}}}}},\n", + " 'kidney corpuscule cell': {'glomerular cell': {'glomerular endothelial cell': {'glomerular capillary endothelial cell': {}},\n", + " 'kidney glomerular epithelial cell': {'epithelial cell of glomerular capsule': {'podocyte': {'mesonephric podocyte': {},\n", + " 'metanephric podocyte': {},\n", + " 'pronephric podocyte': {}},\n", + " 'parietal epithelial cell': {}},\n", + " 'glomerular capillary endothelial cell': {}},\n", + " 'glomerular mesangial cell': {}},\n", + " 'kidney afferent arteriole cell': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {}},\n", + " 'kidney efferent arteriole cell': {'kidney efferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}}},\n", + " 'kidney cortex tubule cell': {'epithelial cell of distal tubule': {'kidney distal convoluted tubule epithelial cell': {'epithelial cell of early distal convoluted tubule': {},\n", + " 'epithelial cell of late distal convoluted tubule': {}},\n", + " 'macula densa epithelial cell': {},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}},\n", + " 'kidney connecting tubule epithelial cell': {'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}}},\n", + " 'kidney connecting tubule principal cell': {}},\n", + " 'kidney pelvis urothelial cell': {}},\n", + " 'epithelial cell of cervix': {'uterine cervix squamous cell': {},\n", + " 'uterine cervix glandular cell': {}},\n", + " 'epithelial cell of amnion': {},\n", + " 'iris pigment epithelial cell': {},\n", + " 'placental epithelial cell': {'endothelial cell of placenta': {'placental villus capillary endothelial cell': {}}},\n", + " 'retinal pigment epithelial cell': {},\n", + " 'ionocyte': {'pulmonary ionocyte': {}},\n", + " 'open tracheal system tracheocyte': {},\n", + " 'epithelial cell of endometrial gland': {},\n", + " 'epithelial cell of umbilical artery': {},\n", + " 'coronet cell': {},\n", + " 'epithelial cell of urethra': {'epithelial cell of prostatic urethra': {'hillock cell of prostatic urethral epithelium': {}},\n", + " 'hillock cell of urethral epithelium': {'hillock cell of prostatic urethral epithelium': {}},\n", + " 'urethra urothelial cell': {},\n", + " 'ovarian microvascular endothelial cell': {},\n", + " 'club-like cell of the urethral epithelium': {}},\n", + " 'epithelial cell of gallbladder': {'gallbladder glandular cell': {}},\n", + " 'conjunctival epithelial cell': {'conjunctiva goblet cell': {}},\n", + " 'epithelial cell of lacrimal canaliculus': {},\n", + " 'epithelial cell of external acoustic meatus': {},\n", + " 'epithelial cell of viscerocranial mucosa': {'nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa': {}},\n", + " 'ovarian surface epithelial cell': {'follicle cell of egg chamber': {'border follicle cell': {},\n", + " 'centripetally migrating follicle cell': {},\n", + " 'interfollicle cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}},\n", + " 'hillock cell': {'hillock cell of urethral epithelium': {'hillock cell of prostatic urethral epithelium': {}},\n", + " 'respiratory hillock cell': {}},\n", + " 'peg cell': {},\n", + " 'airway submucosal gland collecting duct epithelial cell': {}},\n", + " 'visual pigment cell': {'visual pigment cell (sensu Vertebrata)': {},\n", + " 'visual pigment cell (sensu Nematoda and Protostomia)': {},\n", + " 'retinal pigment epithelial cell': {}},\n", + " 'exocrine cell': {'apocrine cell': {},\n", + " 'tear secreting cell': {},\n", + " 'sebum secreting cell': {'acinar cell of sebaceous gland': {}},\n", + " 'dark cell of eccrine sweat gland': {},\n", + " 'clear cell of eccrine sweat gland': {},\n", + " 'mucous neck cell of gastric gland': {},\n", + " 'stem cell of gastric gland': {},\n", + " 'gastric cardiac gland goblet cell': {},\n", + " 'principal gastric gland goblet cell': {},\n", + " 'pyloric gastric gland goblet cell': {},\n", + " 'mammary gland glandular cell': {'mammary alveolar cell': {}},\n", + " 'salivary gland glandular cell': {'acinar cell of salivary gland': {}},\n", + " 'pancreas exocrine glandular cell': {'pancreatic acinar cell': {},\n", + " 'pancreatic goblet cell': {}},\n", + " 'serous secreting cell of bronchus submucosal gland': {},\n", + " 'mucus secreting cell of tracheobronchial tree submucosal gland': {'mucus secreting cell of trachea gland': {},\n", + " 'mucus secreting cell of bronchus submucosal gland': {}}},\n", + " 'endocrine cell': {'enteroendocrine cell': {'type D enteroendocrine cell': {'pancreatic D cell': {},\n", + " 'type D cell of colon': {},\n", + " 'type D cell of small intestine': {},\n", + " 'type D cell of stomach': {}},\n", + " 'enterochromaffin-like cell': {},\n", + " 'type G enteroendocrine cell': {},\n", + " 'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'PP cell': {'pancreatic PP cell': {}, 'PP cell of intestine': {}},\n", + " 'type A enteroendocrine cell': {'pancreatic A cell': {},\n", + " 'type A cell of stomach': {}},\n", + " 'P/D1 enteroendocrine cell': {'P enteroendocrine cell': {},\n", + " 'type D1 enteroendocrine cell': {}},\n", + " 'type I enteroendocrine cell': {},\n", + " 'type L enteroendocrine cell': {},\n", + " 'type N enteroendocrine cell': {},\n", + " 'type S enteroendocrine cell': {},\n", + " 'type TG enteroendocrine cell': {},\n", + " 'type X enteroendocrine cell': {},\n", + " 'pancreatic endocrine cell': {'type B pancreatic cell': {},\n", + " 'pancreatic A cell': {},\n", + " 'pancreatic D cell': {},\n", + " 'pancreatic PP cell': {},\n", + " 'pancreatic epsilon cell': {}},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'intestinal enteroendocrine cell': {'PP cell of intestine': {},\n", + " 'enteroendocrine cell of small intestine': {'type D cell of small intestine': {},\n", + " 'GIP cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}},\n", + " 'enteroendocrine cell of anorectum': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'stomach enteroendocrine cell': {}},\n", + " 'neuroendocrine cell': {'amine precursor uptake and decarboxylation cell': {'chromaffin cell': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'interrenal chromaffin cell': {'interrenal norepinephrine type cell': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'chromaffin cell of paraganglion': {'chromaffin cell of paraaortic body': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}}},\n", + " 'paraganglial type 1 cell': {},\n", + " 'Feyrter cell': {'dense-core granulated cell of epithelium of trachea': {}},\n", + " 'magnocellular neurosecretory cell': {'oxytocin-secreting magnocellular cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'gonadotropin-releasing hormone neuron': {},\n", + " 'prostate neuroendocrine cell': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'parvocellular neurosecretory cell': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'thyroid hormone secreting cell': {},\n", + " 'chromophobe cell': {},\n", + " 'pinealocyte': {'type I pinealocyte': {}, 'type II pinealocyte': {}},\n", + " 'myoendocrine cell': {},\n", + " 'myocardial endocrine cell': {'myocardial endocrine cell of atrium': {},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'myocardial endocrine cell of interventricular septum': {}}},\n", + " 'Leydig cell': {},\n", + " 'phagocyte': {'mature neutrophil': {'band form neutrophil': {},\n", + " 'segmented neutrophil of bone marrow': {}},\n", + " 'macrophage': {'elicited macrophage': {'suppressor macrophage': {'kidney interstitial suppressor macrophage': {}},\n", + " 'inflammatory macrophage': {'kidney interstitial inflammatory macrophage': {}},\n", + " 'alternatively activated macrophage': {'kidney interstitial alternatively activated macrophage': {}}},\n", + " 'tissue-resident macrophage': {'Kupffer cell': {},\n", + " 'peritoneal macrophage': {},\n", + " 'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'mesangial phagocyte': {},\n", + " 'thymic macrophage': {'thymic medullary macrophage': {},\n", + " 'thymic cortical macrophage': {}},\n", + " 'secondary lymphoid organ macrophage': {'lymph node macrophage': {'lymph node subcapsular sinus macrophage': {},\n", + " 'lymph node tingible body macrophage': {}},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}},\n", + " 'mucosa-associated lymphoid tissue macrophage': {'gut-associated lymphoid tissue macrophage': {'gastrointestinal tract (lamina propria) macrophage': {'gastrointestinal tract (lamina propria) macrophage of small intestine': {},\n", + " 'gastrointestinal tract (lamina propria) macrophage of large intestine': {}},\n", + " 'tonsillar macrophage': {},\n", + " \"Peyer's patch macrophage\": {}},\n", + " 'nasal and broncial associated lymphoid tissue macrophage': {}}},\n", + " 'central nervous system macrophage': {'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'meningeal macrophage': {},\n", + " 'choroid-plexus macrophage': {},\n", + " 'perivascular macrophage': {}},\n", + " 'melanophage': {},\n", + " 'pleural macrophage': {},\n", + " 'bone marrow macrophage': {},\n", + " 'adipose macrophage': {'F4/80-negative adipose macrophage': {},\n", + " 'F4/80-positive adipose macrophage': {}},\n", + " 'kidney resident macrophage': {},\n", + " 'lung interstitial macrophage': {}},\n", + " 'epithelioid macrophage': {},\n", + " 'appendix macrophage': {},\n", + " 'colon macrophage': {},\n", + " 'macrophage of medullary sinus of lymph node': {},\n", + " 'anorectum macrophage': {},\n", + " 'lung macrophage': {'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'lung interstitial macrophage': {}},\n", + " 'Hofbauer cell': {}},\n", + " 'phagocyte (sensu Vertebrata)': {'mononuclear phagocyte': {},\n", + " 'multinucleated phagocyte': {}},\n", + " 'phagocyte (sensu Nematoda and Protostomia)': {'coelomocyte': {},\n", + " 'pericardial nephrocyte': {},\n", + " 'garland cell': {}},\n", + " 'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'type A synovial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'hatching gland cell': {},\n", + " 'pigment cell (sensu Nematoda and Protostomia)': {'visual pigment cell (sensu Nematoda and Protostomia)': {}},\n", + " 'pigment cell (sensu Vertebrata)': {'visual pigment cell (sensu Vertebrata)': {},\n", + " 'iris pigment epithelial cell': {}},\n", + " 'scleral cell': {},\n", + " 'choroidal cell of the eye': {},\n", + " 'sheath cell (sensu Nematoda)': {},\n", + " 'histoblast': {},\n", + " 'thecogen cell': {},\n", + " 'scolopale cell': {},\n", + " 'ligament cell': {},\n", + " 'scolopidial ligament cell': {},\n", + " 'male gamete': {'sperm': {'Y chromosome-bearing sperm cell': {},\n", + " 'X chromosome-bearing sperm cell': {},\n", + " 'motile sperm cell': {'amoeboid sperm cell': {},\n", + " 'flagellated sperm cell': {}},\n", + " 'non-motile sperm cell': {}}},\n", + " 'tip cell': {'malpighian tubule tip cell': {}},\n", + " 'iridophore': {},\n", + " 'follicular dendritic cell': {\"Peyer's patch follicular dendritic cell\": {}},\n", + " 'oenocyte': {},\n", + " 'paracrine cell': {'folliculostellate cell': {'folliculostellate cell of pars distalis of adenohypophysis': {}}},\n", + " 'fat body cell': {},\n", + " 'leucophore': {},\n", + " 'erythrophore': {},\n", + " 'labyrinth supporting cell': {},\n", + " 'distal tip cell (sensu Nematoda)': {},\n", + " 'primordial germ cell': {'pole cell': {},\n", + " 'male gonocyte': {},\n", + " 'ooblast': {}},\n", + " 'cap cell': {},\n", + " 'paraganglia type 2 cell': {},\n", + " 'cystoblast': {},\n", + " 'amoeboid cell': {},\n", + " 'cyanophore': {},\n", + " 'neuromast mantle cell': {'anterior lateral line neuromast mantle cell': {},\n", + " 'posterior lateral line neuromast mantle cell': {}},\n", + " 'bone cell': {'osteoclast': {'odontoclast': {'multinuclear odontoclast': {},\n", + " 'mononuclear odontoclast': {}},\n", + " 'mononuclear osteoclast': {'mononuclear odontoclast': {}},\n", + " 'multinuclear osteoclast': {'multinuclear odontoclast': {}}},\n", + " 'osteocyte': {'cementocyte': {}},\n", + " 'non-terminally differentiated osteoblast': {},\n", + " 'bone marrow cell': {'marrow fibroblast': {},\n", + " 'mesenchymal stem cell of the bone marrow': {'mesenchymal stem cell of femoral bone marrow': {}},\n", + " 'stromal cell of bone marrow': {},\n", + " 'bone marrow hematopoietic cell': {'granulocyte monocyte progenitor cell': {'CD34-positive, CD38-positive granulocyte monocyte progenitor': {},\n", + " 'Kit-positive granulocyte monocyte progenitor': {}},\n", + " 'bone marrow macrophage': {},\n", + " 'mononuclear cell of bone marrow': {},\n", + " 'segmented neutrophil of bone marrow': {}}},\n", + " 'endosteal cell': {},\n", + " 'supporting cell of cochlea': {'Claudius cell': {},\n", + " 'Boettcher cell': {},\n", + " 'border cell of cochlea': {},\n", + " 'interdental cell of cochlea': {},\n", + " 'organ of Corti supporting cell': {'Hensen cell': {},\n", + " 'phalangeal cell': {\"Deiter's cell\": {}, 'inner phalangeal cell': {}},\n", + " 'pillar cell': {'internal pillar cell of cochlea': {},\n", + " 'external pillar cell of cochlea': {}}}},\n", + " 'vertebral mesenchymal stem cell': {},\n", + " 'preosteoblast': {},\n", + " 'femural osteoblast': {}},\n", + " 'polar body': {'primary polar body': {}, 'secondary polar body': {}},\n", + " 'corneocyte': {},\n", + " 'hepatic oval stem cell': {},\n", + " 'embryonic cell (metazoa)': {'early embryonic cell (metazoa)': {'blastoderm cell': {},\n", + " 'morula cell': {},\n", + " 'gastrula cell': {},\n", + " 'animal zygote': {},\n", + " 'bottle cell': {}},\n", + " 'neuroplacodal cell': {},\n", + " 'ectodermal cell': {'surface ectodermal cell': {},\n", + " 'neurectodermal cell': {'interneuromast cell': {}}},\n", + " 'mesodermal cell': {'hemangioblast': {},\n", + " 'embryonic blood vessel endothelial progenitor cell': {},\n", + " 'chordamesodermal cell': {},\n", + " 'paraxial cell': {},\n", + " 'lateral mesodermal cell': {'splanchnic mesodermal cell': {}},\n", + " 'intermediate mesodermal cell': {}},\n", + " 'endodermal cell': {'anterior visceral endoderm cell': {}},\n", + " 'embryonic stem cell': {},\n", + " 'epidermal ciliary cell': {},\n", + " 'neural crest cell': {'migratory neural crest cell': {'migratory cranial neural crest cell': {},\n", + " 'migratory trunk neural crest cell': {},\n", + " 'migratory enteric neural crest cell': {},\n", + " 'migratory cardiac neural crest cell': {'cardiac mesenchymal cell': {'endocardial cushion cell': {}}}},\n", + " 'premigratory neural crest cell': {},\n", + " 'vagal neural crest cell': {}}},\n", + " 'progenitor cell of endocrine pancreas': {},\n", + " 'somatic cell': {'multi fate stem cell': {'mesenchymal stem cell': {'metanephric mesenchyme stem cell': {},\n", + " 'hair follicle dermal papilla cell': {'hair follicle dermal papilla cell of scalp': {}},\n", + " 'nephrogenic mesenchyme stem cell': {},\n", + " 'angioblastic mesenchymal cell': {'adult endothelial progenitor cell': {'colony forming unit – Hill cell': {},\n", + " 'circulating angiogenic cell': {},\n", + " 'endothelial colony forming cell': {}}},\n", + " 'amnion mesenchymal stem cell': {},\n", + " 'mesenchymal stem cell of the bone marrow': {'mesenchymal stem cell of femoral bone marrow': {}},\n", + " 'chorionic membrane mesenchymal stem cell': {},\n", + " 'mesenchymal stem cell of umbilical cord': {\"mesenchymal stem cell of Wharton's jelly\": {}},\n", + " 'mesenchymal stem cell of adipose tissue': {'mesenchymal stem cell of abdominal adipose tissue': {}},\n", + " 'hepatic mesenchymal stem cell': {},\n", + " 'vertebral mesenchymal stem cell': {},\n", + " 'amniotic stem cell': {},\n", + " 'mesenchymal lymphangioblast': {},\n", + " 'placental amniotic mesenchymal stromal cell': {}},\n", + " 'blastemal cell': {},\n", + " 'multi-potent skeletal muscle stem cell': {},\n", + " 'stem cell of gastric gland': {},\n", + " 'hepatic stem cell': {'hepatic mesenchymal stem cell': {}},\n", + " 'intestinal crypt stem cell': {'intestinal crypt stem cell of large intestine': {'intestinal crypt stem cell of appendix': {}},\n", + " 'intestinal crypt stem cell of small intestine': {},\n", + " 'intestinal crypt stem cell of colon': {},\n", + " 'intestinal crypt stem cell of anorectum': {}},\n", + " 'type III taste bud cell': {},\n", + " 'keratinocyte stem cell': {},\n", + " 'prostate stem cell': {},\n", + " 'mammary stem cell': {},\n", + " 'cardioblast': {},\n", + " 'retinal progenitor cell': {},\n", + " 'lymphangioblast': {'mesenchymal lymphangioblast': {},\n", + " 'vascular lymphangioblast': {}},\n", + " 'hepatoblast': {},\n", + " 'neural crest cell': {'migratory neural crest cell': {'migratory cranial neural crest cell': {},\n", + " 'migratory trunk neural crest cell': {},\n", + " 'migratory enteric neural crest cell': {},\n", + " 'migratory cardiac neural crest cell': {'cardiac mesenchymal cell': {'endocardial cushion cell': {}}}},\n", + " 'premigratory neural crest cell': {},\n", + " 'vagal neural crest cell': {}}},\n", + " 'duct epithelial cell': {'branched duct epithelial cell': {'tracheoblast': {},\n", + " 'pancreatic ductal cell': {},\n", + " 'luminal epithelial cell of mammary gland': {'luminal cell of acinus of lactiferous gland': {},\n", + " 'luminal cell of lactiferous duct': {'luminal cell of lactiferous terminal ductal lobular unit': {}}},\n", + " 'pancreatic goblet cell': {},\n", + " 'cholangiocyte': {'intrahepatic cholangiocyte': {},\n", + " 'extrahepatic cholangiocyte': {}}},\n", + " 'non-branched duct epithelial cell': {'epithelial cell of prostatic duct': {},\n", + " 'epithelial cell of lacrimal duct': {'epithelial cell of nasolacrimal duct': {}},\n", + " 'kidney collecting duct epithelial cell': {'kidney collecting duct principal cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney papillary duct principal cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}}}},\n", + " 'basal epithelial cell of prostatic duct': {},\n", + " 'luminal epithelial cell of prostatic duct': {},\n", + " 'seminiferous tubule epithelial cell': {'Sertoli cell': {},\n", + " 'peritubular myoid cell': {}},\n", + " 'myoepithelial cell of lactiferous duct': {},\n", + " 'epithelial cell of lacrimal sac': {},\n", + " 'epididymis glandular cell': {},\n", + " 'seminal vesicle glandular cell': {}},\n", + " 'barrier epithelial cell': {},\n", + " 'columnar/cuboidal epithelial cell': {'simple columnar epithelial cell': {'ameloblast': {},\n", + " 'imaginal disc cell': {}},\n", + " 'myoepithelial cell': {'myoepithelial cell of mammary gland': {'myoepithelial cell of lactiferous alveolus': {},\n", + " 'myoepithelial cell of lactiferous duct': {},\n", + " 'myoepithelial cell of acinus of lactiferous gland': {}},\n", + " 'peritubular myoid cell': {},\n", + " 'myoepithelial cell of intralobular lactiferous duct': {},\n", + " 'myoepithelial cell of sweat gland': {},\n", + " 'myoepithelial cell of terminal lactiferous duct': {},\n", + " 'myoepithelial cell of dilator pupillae': {},\n", + " 'myoepithelial cell of main lactiferous duct': {},\n", + " 'myoepithelial cell of primary lactiferous duct': {},\n", + " 'myoepithelial cell of secondary lactiferous duct': {},\n", + " 'myoepithelial cell of tertiary lactiferous duct': {},\n", + " 'myoepithelial cell of quarternary lactiferous duct': {},\n", + " 'myoepithelial cell of bronchus submucosal gland': {},\n", + " 'myoepithelial cell of trachea gland': {}},\n", + " 'brush border epithelial cell': {'enterocyte': {'enterocyte of epithelium of large intestine': {'enterocyte of epithelium proper of large intestine': {},\n", + " 'enterocyte of colon': {}},\n", + " 'enterocyte of appendix': {},\n", + " 'enterocyte of anorectum': {},\n", + " 'vacuolated fetal-type enterocyte': {},\n", + " 'lysosome-rich enterocyte': {},\n", + " 'enterocyte of epithelium of small intestine': {'enterocyte of epithelium of intestinal villus': {},\n", + " 'enterocyte of epithelium of crypt of Lieberkuhn of small intestine': {},\n", + " 'enterocyte of epithelium proper of small intestine': {'enterocyte of epithelium proper of duodenum': {},\n", + " 'enterocyte of epithelium proper of jejunum': {},\n", + " 'enterocyte of epithelium proper of ileum': {}}},\n", + " 'enterocyte of epithelium of duodenal gland': {}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}}},\n", + " 'stratified cuboidal epithelial cell': {},\n", + " 'sheath cell': {},\n", + " 'neurecto-epithelial cell': {'odontoblast': {'non-terminally differentiated odontoblast': {},\n", + " 'terminally differentiated odontoblast': {}},\n", + " 'ependymal cell': {'choroid plexus epithelial cell': {}},\n", + " 'corneal endothelial cell': {},\n", + " 'neuroendocrine cell': {'amine precursor uptake and decarboxylation cell': {'chromaffin cell': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'interrenal chromaffin cell': {'interrenal norepinephrine type cell': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'chromaffin cell of paraganglion': {'chromaffin cell of paraaortic body': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}}},\n", + " 'paraganglial type 1 cell': {},\n", + " 'Feyrter cell': {'dense-core granulated cell of epithelium of trachea': {}},\n", + " 'magnocellular neurosecretory cell': {'oxytocin-secreting magnocellular cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'gonadotropin-releasing hormone neuron': {},\n", + " 'prostate neuroendocrine cell': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'parvocellular neurosecretory cell': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'Merkel cell': {},\n", + " 'epidermal cell (sensu Arthropoda)': {'tormogen cell': {},\n", + " 'trichogen cell': {}},\n", + " 'epidermoblast': {},\n", + " 'pigmented epithelial cell': {'pigmented ciliary epithelial cell': {}},\n", + " 'parafollicular cell': {},\n", + " 'pinealocyte': {'type I pinealocyte': {}, 'type II pinealocyte': {}},\n", + " 'cerebrospinal fluid secreting cell': {},\n", + " 'interstitial cell of Cajal': {},\n", + " 'olfactory epithelial cell': {'basal cell of olfactory epithelium': {'olfactory epithelial supporting cell': {},\n", + " 'globose cell of olfactory epithelium': {},\n", + " 'basal proper cell of olfactory epithelium': {}}},\n", + " 'folliculostellate cell of pars distalis of adenohypophysis': {},\n", + " 'interstitial cell of pineal gland': {},\n", + " 'supporting cell of carotid body': {'type II cell of carotid body': {}},\n", + " 'type I cell of carotid body': {},\n", + " 'non-pigmented ciliary epithelial cell': {},\n", + " 'meningothelial cell': {},\n", + " 'strial intermediate cell': {},\n", + " 'auditory epithelial supporting cell': {'supporting cell of cochlea': {'Claudius cell': {},\n", + " 'Boettcher cell': {},\n", + " 'border cell of cochlea': {},\n", + " 'interdental cell of cochlea': {},\n", + " 'organ of Corti supporting cell': {'Hensen cell': {},\n", + " 'phalangeal cell': {\"Deiter's cell\": {},\n", + " 'inner phalangeal cell': {}},\n", + " 'pillar cell': {'internal pillar cell of cochlea': {},\n", + " 'external pillar cell of cochlea': {}}}},\n", + " 'supporting cell of vestibular epithelium': {'external supporting cell of vestibular epithelium': {},\n", + " 'external limiting cell of vestibular epithelium': {}}},\n", + " 'hypendymal cell': {}},\n", + " 'lens epithelial cell': {'anterior lens cell': {}},\n", + " 'endothelial cell of high endothelial venule': {},\n", + " 'renal principal cell': {'kidney collecting duct principal cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney papillary duct principal cell': {}},\n", + " 'kidney connecting tubule principal cell': {}},\n", + " 'renal intercalated cell': {'renal beta-intercalated cell': {'kidney collecting duct beta-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}},\n", + " 'renal alpha-intercalated cell': {'kidney collecting duct alpha-intercalated cell': {},\n", + " 'kidney connecting tubule alpha-intercalated cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}},\n", + " 'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}}},\n", + " 'peridermal cell': {},\n", + " 'stratified epithelial cell': {'stratified squamous epithelial cell': {'keratinizing barrier epithelial cell': {'keratinocyte': {'Merkel cell': {},\n", + " 'prickle cell': {},\n", + " 'basal cell of epidermis': {'limb basal cell of epidermis': {}},\n", + " 'granular cell of epidermis': {},\n", + " 'squamous cell of epidermis': {},\n", + " 'keratinocyte stem cell': {},\n", + " 'foreskin keratinocyte': {},\n", + " 'hair follicular keratinocyte': {'keratinized cell of hair follicle': {}},\n", + " 'suprabasal keratinocyte': {}},\n", + " 'keratinized cell of the oral mucosa': {},\n", + " 'keratinized squamous cell of esophagus': {},\n", + " 'keratinized epithelial cell of the anal canal': {}},\n", + " 'non keratinizing barrier epithelial cell': {'esophagus non-keratinized squamous epithelial cell': {}},\n", + " 'stratified squamous epithelial cell of anal canal': {'keratinized epithelial cell of the anal canal': {}}},\n", + " 'stratified cuboidal epithelial cell': {}},\n", + " 'epithelial cell of pancreas': {'pancreatic endocrine cell': {'type B pancreatic cell': {},\n", + " 'pancreatic A cell': {},\n", + " 'pancreatic D cell': {},\n", + " 'pancreatic PP cell': {},\n", + " 'pancreatic epsilon cell': {}},\n", + " 'epithelial cell of exocrine pancreas': {'pancreatic ductal cell': {},\n", + " 'pancreatic centro-acinar cell': {},\n", + " 'pancreas exocrine glandular cell': {'pancreatic acinar cell': {},\n", + " 'pancreatic goblet cell': {}}}},\n", + " 'sensory epithelial cell': {'taste receptor cell': {'type III taste bud cell': {},\n", + " 'type II taste cell': {},\n", + " 'type IV taste receptor cell': {},\n", + " 'type V taste receptor cell': {},\n", + " 'type I taste bud cell': {},\n", + " 'taste receptor cell of tongue': {}},\n", + " 'olfactory epithelial cell': {'basal cell of olfactory epithelium': {'olfactory epithelial supporting cell': {},\n", + " 'globose cell of olfactory epithelium': {},\n", + " 'basal proper cell of olfactory epithelium': {}}},\n", + " 'auditory epithelial cell': {'strial intermediate cell': {},\n", + " 'strial marginal cell': {},\n", + " 'strial basal cell': {},\n", + " 'auditory epithelial supporting cell': {'supporting cell of cochlea': {'Claudius cell': {},\n", + " 'Boettcher cell': {},\n", + " 'border cell of cochlea': {},\n", + " 'interdental cell of cochlea': {},\n", + " 'organ of Corti supporting cell': {'Hensen cell': {},\n", + " 'phalangeal cell': {\"Deiter's cell\": {},\n", + " 'inner phalangeal cell': {}},\n", + " 'pillar cell': {'internal pillar cell of cochlea': {},\n", + " 'external pillar cell of cochlea': {}}}},\n", + " 'supporting cell of vestibular epithelium': {'external supporting cell of vestibular epithelium': {},\n", + " 'external limiting cell of vestibular epithelium': {}}}},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}}},\n", + " 'melanocyte': {'epithelial melanocyte': {'strial intermediate cell': {},\n", + " 'epidermal melanocyte': {'hair follicle melanocyte': {}}},\n", + " 'retinal melanocyte': {},\n", + " 'dark melanocyte': {},\n", + " 'light melanocyte': {},\n", + " 'melanocyte of eyelid': {},\n", + " 'melanocyte of skin': {'dermal melanocyte': {},\n", + " 'epidermal melanocyte': {'hair follicle melanocyte': {}},\n", + " 'melanocyte of skin of face': {},\n", + " 'melanocyte of foreskin': {}},\n", + " 'foreskin melanocyte': {'melanocyte of foreskin': {}},\n", + " 'choroidal melanocyte': {}},\n", + " 'glandular epithelial cell': {'goblet cell': {'respiratory goblet cell': {'nasal mucosa goblet cell': {},\n", + " 'tracheobronchial goblet cell': {'bronchial goblet cell': {'goblet cell of epithelium of lobar bronchus': {}},\n", + " 'tracheal goblet cell': {}},\n", + " 'lung goblet cell': {'goblet cell of epithelium of lobar bronchus': {}}},\n", + " 'intestine goblet cell': {'large intestine goblet cell': {'colon goblet cell': {},\n", + " 'anorectum goblet cell': {},\n", + " 'large intestine crypt goblet cell': {},\n", + " 'appendix goblet cell': {}},\n", + " 'small intestine goblet cell': {'intestinal villus goblet cell': {'duodenal goblet cell': {},\n", + " 'jejunal goblet cell': {},\n", + " 'ileal goblet cell': {}}}},\n", + " 'gastric goblet cell': {'gastric cardiac gland goblet cell': {},\n", + " 'principal gastric gland goblet cell': {},\n", + " 'pyloric gastric gland goblet cell': {}},\n", + " 'pancreatic goblet cell': {},\n", + " 'conjunctiva goblet cell': {}},\n", + " 'enteroendocrine cell': {'type D enteroendocrine cell': {'pancreatic D cell': {},\n", + " 'type D cell of colon': {},\n", + " 'type D cell of small intestine': {},\n", + " 'type D cell of stomach': {}},\n", + " 'enterochromaffin-like cell': {},\n", + " 'type G enteroendocrine cell': {},\n", + " 'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'PP cell': {'pancreatic PP cell': {}, 'PP cell of intestine': {}},\n", + " 'type A enteroendocrine cell': {'pancreatic A cell': {},\n", + " 'type A cell of stomach': {}},\n", + " 'P/D1 enteroendocrine cell': {'P enteroendocrine cell': {},\n", + " 'type D1 enteroendocrine cell': {}},\n", + " 'type I enteroendocrine cell': {},\n", + " 'type L enteroendocrine cell': {},\n", + " 'type N enteroendocrine cell': {},\n", + " 'type S enteroendocrine cell': {},\n", + " 'type TG enteroendocrine cell': {},\n", + " 'type X enteroendocrine cell': {},\n", + " 'pancreatic endocrine cell': {'type B pancreatic cell': {},\n", + " 'pancreatic A cell': {},\n", + " 'pancreatic D cell': {},\n", + " 'pancreatic PP cell': {},\n", + " 'pancreatic epsilon cell': {}},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'intestinal enteroendocrine cell': {'PP cell of intestine': {},\n", + " 'enteroendocrine cell of small intestine': {'type D cell of small intestine': {},\n", + " 'GIP cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}},\n", + " 'enteroendocrine cell of anorectum': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'stomach enteroendocrine cell': {}},\n", + " 'sweat secreting cell': {'dark cell of eccrine sweat gland': {},\n", + " 'clear cell of eccrine sweat gland': {}},\n", + " 'eccrine cell': {'dark cell of eccrine sweat gland': {},\n", + " 'clear cell of eccrine sweat gland': {}},\n", + " 'paneth cell': {'paneth cell of the appendix': {},\n", + " 'paneth cell of colon': {},\n", + " 'paneth cell of anorectum': {},\n", + " 'paneth cell of epithelium of small intestine': {'paneth cell of epithelium proper of small intestine': {},\n", + " 'paneth cell of epithelium of crypt of Lieberkuhn of small intestine': {}}},\n", + " 'acinar cell': {'pancreatic acinar cell': {},\n", + " 'acinar cell of sebaceous gland': {},\n", + " 'acinar cell of salivary gland': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'mucous neck cell': {'mucous neck cell of gastric gland': {}},\n", + " 'epithelial cell of thyroid gland': {'oxyphil cell of thyroid': {},\n", + " 'thyroid follicular cell': {}},\n", + " 'endocrine-paracrine cell of prostate gland': {},\n", + " 'glandular cell of esophagus': {'epithelial cell of esophageal gland proper': {},\n", + " 'epithelial cell of esophageal cardiac gland': {}},\n", + " 'glandular cell of the large intestine': {'paneth cell of anorectum': {},\n", + " 'enteroendocrine cell of anorectum': {},\n", + " 'large intestine goblet cell': {'colon goblet cell': {},\n", + " 'anorectum goblet cell': {},\n", + " 'large intestine crypt goblet cell': {},\n", + " 'appendix goblet cell': {}},\n", + " 'appendix glandular cell': {'paneth cell of the appendix': {},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'appendix goblet cell': {}},\n", + " 'colon glandular cell': {'paneth cell of colon': {},\n", + " 'colon goblet cell': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}}},\n", + " 'rectum glandular cell': {}},\n", + " 'glandular cell of stomach': {'peptic cell': {},\n", + " 'parietal cell': {},\n", + " 'mucous cell of stomach': {'type G enteroendocrine cell': {},\n", + " 'mucous neck cell of gastric gland': {},\n", + " 'surface mucosal cell of stomach': {},\n", + " 'stem cell of gastric gland': {},\n", + " 'gastric goblet cell': {'gastric cardiac gland goblet cell': {},\n", + " 'principal gastric gland goblet cell': {},\n", + " 'pyloric gastric gland goblet cell': {}}},\n", + " 'type A cell of stomach': {},\n", + " 'type D cell of stomach': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'stomach enteroendocrine cell': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'mammary gland glandular cell': {'mammary alveolar cell': {}},\n", + " 'epididymis glandular cell': {},\n", + " 'oviduct glandular cell': {'glandular cell of endometrium': {},\n", + " 'uterine cervix glandular cell': {},\n", + " 'fallopian tube secretory epithelial cell': {}},\n", + " 'gallbladder glandular cell': {},\n", + " 'parathyroid glandular cell': {'epithelial cell of parathyroid gland': {'chief cell of parathyroid gland': {'active chief cell of parathyroid gland': {},\n", + " 'dark chief cell of parathyroid gland': {},\n", + " 'clear chief cell of parathyroid gland': {},\n", + " 'inactive chief cell of parathyoid gland': {},\n", + " 'light chief cell of parathyroid gland': {}},\n", + " 'oxyphil cell of parathyroid gland': {},\n", + " 'transitional cell of parathyroid gland': {}}},\n", + " 'salivary gland glandular cell': {'acinar cell of salivary gland': {}},\n", + " 'seminal vesicle glandular cell': {},\n", + " 'small intestine glandular cell': {'enteroendocrine cell of small intestine': {'type D cell of small intestine': {},\n", + " 'GIP cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'paneth cell of epithelium of small intestine': {'paneth cell of epithelium proper of small intestine': {},\n", + " 'paneth cell of epithelium of crypt of Lieberkuhn of small intestine': {}},\n", + " 'small intestine goblet cell': {'intestinal villus goblet cell': {'duodenal goblet cell': {},\n", + " 'jejunal goblet cell': {},\n", + " 'ileal goblet cell': {}}},\n", + " 'duodenum glandular cell': {'duodenal goblet cell': {}}},\n", + " 'pancreas exocrine glandular cell': {'pancreatic acinar cell': {},\n", + " 'pancreatic goblet cell': {}},\n", + " 'adrenal gland glandular cell': {'cortical cell of adrenal gland': {'type I cell of adrenal cortex': {},\n", + " 'type II cell of adrenal cortex': {},\n", + " 'type III cell of adrenal cortex': {}},\n", + " 'adrenal cortex chromaffin cell': {}}},\n", + " 'hepatocyte': {'periportal region hepatocyte': {},\n", + " 'midzonal region hepatocyte': {},\n", + " 'centrilobular region hepatocyte': {}},\n", + " 'muscle cell': {'striated muscle cell': {'obliquely striated muscle cell': {'obliquely striated somatic muscle cell': {}},\n", + " 'cardiac muscle cell': {'cardiac muscle cell (sensu Arthopoda)': {},\n", + " 'specialized cardiac myocyte': {'Purkinje myocyte': {'Purkinje myocyte of interventricular septum': {},\n", + " 'Purkinje myocyte of atrioventricular node': {},\n", + " 'Purkinje myocyte of internodal tract': {},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}},\n", + " 'nodal myocyte': {'myocyte of sinoatrial node': {'cardiac pacemaker cell of sinoatrial node': {},\n", + " 'transitional myocyte of sinoatrial node': {}},\n", + " 'myocyte of atrioventricular node': {'Purkinje myocyte of atrioventricular node': {}}},\n", + " 'transitional myocyte': {'transitional myocyte of interatrial septum': {},\n", + " 'transitional myocyte of interventricular septum': {},\n", + " 'transitional myocyte of sinoatrial node': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}}},\n", + " 'myocardial endocrine cell': {'myocardial endocrine cell of atrium': {},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'myocardial endocrine cell of interventricular septum': {}},\n", + " 'internodal tract myocyte': {'myocyte of anterior internodal tract': {},\n", + " 'myocyte of atrial branch of anterior internodal tract': {},\n", + " 'myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'myocyte of middle internodal tract': {},\n", + " 'myocyte of posterior internodal tract': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'Purkinje myocyte of internodal tract': {}}},\n", + " 'regular cardiac myocyte': {'regular interventricular cardiac myocyte': {},\n", + " 'regular atrial cardiac myocyte': {},\n", + " 'regular interatrial cardiac myocyte': {},\n", + " 'regular ventricular cardiac myocyte': {}},\n", + " 'fetal cardiomyocyte': {},\n", + " 'ventricular cardiac muscle cell': {'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}}},\n", + " 'myotube': {'skeletal muscle fiber': {'tongue muscle cell': {},\n", + " 'extrafusal muscle fiber': {'slow muscle cell': {'type I muscle cell': {}},\n", + " 'fast muscle cell': {'type II muscle cell': {'type IIa muscle cell': {},\n", + " 'type IIb muscle cell': {}},\n", + " 'white muscle cell': {'type IIb muscle cell': {}}},\n", + " 'red muscle cell': {'type I muscle cell': {},\n", + " 'type IIa muscle cell': {}},\n", + " 'intermediate muscle cell': {}},\n", + " 'intrafusal muscle fiber': {'nuclear chain fiber': {},\n", + " 'nuclear bag fiber': {'dynamic nuclear bag fiber': {},\n", + " 'static nuclear bag fiber': {}}},\n", + " 'embryonic skeletal muscle fiber': {},\n", + " 'fetal and neonatal skeletal muscle fiber': {}},\n", + " 'somatic muscle myotube': {'insect flight muscle cell': {}}},\n", + " 'striated visceral muscle cell': {'transversely striated visceral muscle cell': {'internodal tract myocyte': {'myocyte of anterior internodal tract': {},\n", + " 'myocyte of atrial branch of anterior internodal tract': {},\n", + " 'myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'myocyte of middle internodal tract': {},\n", + " 'myocyte of posterior internodal tract': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'Purkinje myocyte of internodal tract': {}},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'myocyte of sinoatrial node': {'cardiac pacemaker cell of sinoatrial node': {},\n", + " 'transitional myocyte of sinoatrial node': {}},\n", + " 'myocyte of atrioventricular node': {'Purkinje myocyte of atrioventricular node': {}},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}}},\n", + " 'skeletal muscle tissue of pectoralis major striated muscle cell': {}},\n", + " 'non-striated muscle cell': {'smooth muscle cell': {'smooth muscle cell neural crest derived': {},\n", + " 'sphincter associated smooth muscle cell': {'smooth muscle cell of sphincter of pupil': {}},\n", + " 'vascular associated smooth muscle cell': {'smooth muscle cell of the brain vasculature': {},\n", + " 'microcirculation associated smooth muscle cell': {'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'lymphatic vessel smooth muscle cell': {},\n", + " 'blood vessel smooth muscle cell': {'aortic smooth muscle cell': {},\n", + " 'smooth muscle cell of the umbilical vein': {},\n", + " 'smooth muscle cell of the brachiocephalic vasculature': {},\n", + " 'smooth muscle cell of the pulmonary artery': {},\n", + " 'smooth muscle cell of the coronary artery': {},\n", + " 'smooth muscle cell of the umbilical artery': {},\n", + " 'smooth muscle cell of the subclavian artery': {'smooth muscle cell of the internal thoracic artery': {}},\n", + " 'smooth muscle cell of the carotid artery': {},\n", + " 'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}}},\n", + " 'kidney granular cell': {},\n", + " 'enteric smooth muscle cell': {'smooth muscle cell of small intestine': {'smooth muscle fiber of duodenum': {},\n", + " 'smooth muscle fiber of jejunum': {},\n", + " 'smooth muscle fiber of ileum': {}},\n", + " 'smooth muscle cell of large intestine': {'smooth muscle cell of anorectum': {},\n", + " 'smooth muscle cell of colon': {'smooth muscle cell of cecum': {},\n", + " 'smooth muscle fiber of ascending colon': {},\n", + " 'smooth muscle fiber of transverse colon': {},\n", + " 'smooth muscle fiber of descending colon': {},\n", + " 'smooth muscle cell of sigmoid colon': {}},\n", + " 'smooth muscle cell of rectum': {},\n", + " 'smooth muscle cell of taenia coli': {},\n", + " 'smooth muscle cell of large intestine smooth muscle circular layer': {},\n", + " 'smooth muscle cell of large intestine smooth muscle longitudinal layer': {}}},\n", + " 'smooth muscle cell of bladder': {},\n", + " 'smooth muscle cell of the esophagus': {},\n", + " 'uterine smooth muscle cell': {'myometrial cell': {}},\n", + " 'smooth muscle cell of placenta': {},\n", + " 'tracheobronchial smooth muscle cell': {'bronchial smooth muscle cell': {},\n", + " 'smooth muscle cell of trachea': {},\n", + " 'bronchiolar smooth muscle cell': {}},\n", + " 'ciliary muscle cell': {},\n", + " 'smooth muscle cell of prostate': {},\n", + " 'kidney pelvis smooth muscle cell': {},\n", + " 'ureter smooth muscle cell': {}}},\n", + " 'somatic muscle cell': {'somatic muscle myotube': {'insect flight muscle cell': {}},\n", + " 'obliquely striated somatic muscle cell': {}},\n", + " 'visceral muscle cell': {'smooth muscle cell': {'smooth muscle cell neural crest derived': {},\n", + " 'sphincter associated smooth muscle cell': {'smooth muscle cell of sphincter of pupil': {}},\n", + " 'vascular associated smooth muscle cell': {'smooth muscle cell of the brain vasculature': {},\n", + " 'microcirculation associated smooth muscle cell': {'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'lymphatic vessel smooth muscle cell': {},\n", + " 'blood vessel smooth muscle cell': {'aortic smooth muscle cell': {},\n", + " 'smooth muscle cell of the umbilical vein': {},\n", + " 'smooth muscle cell of the brachiocephalic vasculature': {},\n", + " 'smooth muscle cell of the pulmonary artery': {},\n", + " 'smooth muscle cell of the coronary artery': {},\n", + " 'smooth muscle cell of the umbilical artery': {},\n", + " 'smooth muscle cell of the subclavian artery': {'smooth muscle cell of the internal thoracic artery': {}},\n", + " 'smooth muscle cell of the carotid artery': {},\n", + " 'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}}},\n", + " 'kidney granular cell': {},\n", + " 'enteric smooth muscle cell': {'smooth muscle cell of small intestine': {'smooth muscle fiber of duodenum': {},\n", + " 'smooth muscle fiber of jejunum': {},\n", + " 'smooth muscle fiber of ileum': {}},\n", + " 'smooth muscle cell of large intestine': {'smooth muscle cell of anorectum': {},\n", + " 'smooth muscle cell of colon': {'smooth muscle cell of cecum': {},\n", + " 'smooth muscle fiber of ascending colon': {},\n", + " 'smooth muscle fiber of transverse colon': {},\n", + " 'smooth muscle fiber of descending colon': {},\n", + " 'smooth muscle cell of sigmoid colon': {}},\n", + " 'smooth muscle cell of rectum': {},\n", + " 'smooth muscle cell of taenia coli': {},\n", + " 'smooth muscle cell of large intestine smooth muscle circular layer': {},\n", + " 'smooth muscle cell of large intestine smooth muscle longitudinal layer': {}}},\n", + " 'smooth muscle cell of bladder': {},\n", + " 'smooth muscle cell of the esophagus': {},\n", + " 'uterine smooth muscle cell': {'myometrial cell': {}},\n", + " 'smooth muscle cell of placenta': {},\n", + " 'tracheobronchial smooth muscle cell': {'bronchial smooth muscle cell': {},\n", + " 'smooth muscle cell of trachea': {},\n", + " 'bronchiolar smooth muscle cell': {}},\n", + " 'ciliary muscle cell': {},\n", + " 'smooth muscle cell of prostate': {},\n", + " 'kidney pelvis smooth muscle cell': {},\n", + " 'ureter smooth muscle cell': {}},\n", + " 'striated visceral muscle cell': {'transversely striated visceral muscle cell': {'internodal tract myocyte': {'myocyte of anterior internodal tract': {},\n", + " 'myocyte of atrial branch of anterior internodal tract': {},\n", + " 'myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'myocyte of middle internodal tract': {},\n", + " 'myocyte of posterior internodal tract': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'Purkinje myocyte of internodal tract': {}},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'myocyte of sinoatrial node': {'cardiac pacemaker cell of sinoatrial node': {},\n", + " 'transitional myocyte of sinoatrial node': {}},\n", + " 'myocyte of atrioventricular node': {'Purkinje myocyte of atrioventricular node': {}},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}}}}},\n", + " 'cell of skeletal muscle': {'multi-potent skeletal muscle stem cell': {},\n", + " 'skeletal muscle satellite cell': {'skeletal muscle satellite stem cell': {},\n", + " 'quiescent skeletal muscle satellite cell': {},\n", + " 'activated skeletal muscle satellite cell': {},\n", + " 'skeletal muscle satellite myogenic cell': {}},\n", + " 'skeletal muscle fiber': {'tongue muscle cell': {},\n", + " 'extrafusal muscle fiber': {'slow muscle cell': {'type I muscle cell': {}},\n", + " 'fast muscle cell': {'type II muscle cell': {'type IIa muscle cell': {},\n", + " 'type IIb muscle cell': {}},\n", + " 'white muscle cell': {'type IIb muscle cell': {}}},\n", + " 'red muscle cell': {'type I muscle cell': {},\n", + " 'type IIa muscle cell': {}},\n", + " 'intermediate muscle cell': {}},\n", + " 'intrafusal muscle fiber': {'nuclear chain fiber': {},\n", + " 'nuclear bag fiber': {'dynamic nuclear bag fiber': {},\n", + " 'static nuclear bag fiber': {}}},\n", + " 'embryonic skeletal muscle fiber': {},\n", + " 'fetal and neonatal skeletal muscle fiber': {}},\n", + " 'adult skeletal muscle myoblast': {},\n", + " 'skeletal muscle fibroblast': {},\n", + " 'skeletal muscle tissue of pectoralis major striated muscle cell': {}},\n", + " 'transitional epithelial cell': {'urothelial cell': {'basal cell of urothelium': {},\n", + " 'kidney pelvis urothelial cell': {},\n", + " 'ureter urothelial cell': {},\n", + " 'bladder urothelial cell': {'urothelial cell of trigone of urinary bladder': {}},\n", + " 'urethra urothelial cell': {},\n", + " 'intermediate cell of urothelium': {},\n", + " 'umbrella cell of urothelium': {}}},\n", + " 'extraembryonic cell': {'amnioserosal cell': {},\n", + " 'trophoblast cell': {'mononuclear cytotrophoblast cell': {},\n", + " 'intermediate trophoblast cell': {},\n", + " 'anchoring trophoblast': {},\n", + " 'trophoblast giant cell': {'primary trophoblast giant cell': {},\n", + " 'secondary trophoblast giant cell': {}},\n", + " 'spongiotrophoblast cell': {},\n", + " 'extravillous trophoblast': {'fused extravillous trophoblast': {}},\n", + " 'chorionic trophoblast cell': {'chorionic girdle cell': {}},\n", + " 'placental villous trophoblast': {'syncytiotrophoblast cell': {}}},\n", + " 'yolk cell': {},\n", + " 'amniocyte': {'amniotic stem cell': {}},\n", + " 'mesenchymal stem cell of umbilical cord': {\"mesenchymal stem cell of Wharton's jelly\": {}},\n", + " 'placental epithelial cell': {'endothelial cell of placenta': {'placental villus capillary endothelial cell': {}}},\n", + " 'decidual pericyte': {},\n", + " 'trophectodermal cell': {},\n", + " 'decidual cell': {},\n", + " 'umbilical artery endothelial cell': {},\n", + " 'mononuclear cell of umbilical cord': {}},\n", + " 'Caenorhabditis hypodermal cell': {},\n", + " 'arcade cell': {},\n", + " 'syncytial epithelial cell': {},\n", + " 'follicular epithelial cell': {'follicle cell of egg chamber': {'border follicle cell': {},\n", + " 'centripetally migrating follicle cell': {},\n", + " 'interfollicle cell': {}},\n", + " 'eggshell secreting cell': {},\n", + " 'follicular cell of ovary': {'granulosa cell': {},\n", + " 'cumulus cell': {'corona radiata cell': {}},\n", + " 'primary follicular cell of ovary': {},\n", + " 'secondary follicular cell of ovary': {}}},\n", + " 'melanoblast': {},\n", + " 'fenestrated cell': {'glomerular endothelial cell': {'glomerular capillary endothelial cell': {}}},\n", + " 'muscle precursor cell': {'myoblast': {'smooth muscle myoblast': {},\n", + " 'skeletal muscle myoblast': {'slow muscle myoblast': {},\n", + " 'fast muscle myoblast': {},\n", + " 'adult skeletal muscle myoblast': {}},\n", + " 'somatic muscle myoblast': {'fusion competent myoblast': {},\n", + " 'muscle founder cell': {}},\n", + " 'cardiac myoblast': {'cardioblast (sensu Arthropoda)': {},\n", + " 'cardiac muscle myoblast': {}}},\n", + " 'adepithelial cell': {},\n", + " 'skeletal muscle satellite cell': {'skeletal muscle satellite stem cell': {},\n", + " 'quiescent skeletal muscle satellite cell': {},\n", + " 'activated skeletal muscle satellite cell': {},\n", + " 'skeletal muscle satellite myogenic cell': {}},\n", + " 'adaxial cell': {}},\n", + " 'somatic stem cell': {'single fate stem cell': {'epithelial fate stem cell': {'stratified epithelial stem cell': {'stratified keratinized epithelial stem cell': {},\n", + " 'stratified non keratinized epithelial stem cell': {}},\n", + " 'seam cell': {},\n", + " 'follicle stem cell (sensu Arthropoda)': {},\n", + " 'basal cell': {'basal cell of epidermis': {'limb basal cell of epidermis': {}},\n", + " 'respiratory basal cell': {'basal cell of epithelium of trachea': {},\n", + " 'basal cell of epithelium of bronchus': {},\n", + " 'basal cell of epithelium of terminal bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of respiratory bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of lobular bronchiole': {}},\n", + " 'epithelial cell of stratum germinativum of esophagus': {},\n", + " 'basal cell of urothelium': {},\n", + " 'airway submucosal gland duct basal cell': {}},\n", + " 'amniotic epithelial stem cell': {}},\n", + " 'hair matrix stem cell': {},\n", + " 'primitive cardiac myocyte': {},\n", + " 'skeletal muscle satellite stem cell': {}},\n", + " 'hematopoietic stem cell': {'Kit and Sca1-positive hematopoietic stem cell': {'short term hematopoietic stem cell': {},\n", + " 'long term hematopoietic stem cell': {}},\n", + " 'CD34-positive, CD38-negative hematopoietic stem cell': {},\n", + " 'peripheral blood stem cell': {'cord blood hematopoietic stem cell': {}},\n", + " 'gestational hematopoietic stem cell': {'fetal liver hematopoietic progenitor cell': {},\n", + " 'yolk sac hematopoietic stem cell': {},\n", + " 'placental hematopoietic stem cell': {},\n", + " 'AGM hematopoietic stem cell': {},\n", + " 'cord blood hematopoietic stem cell': {}}},\n", + " 'totipotent stem cell': {'epiblast cell': {}},\n", + " 'pluripotent stem cell': {},\n", + " 'neuroepithelial stem cell': {},\n", + " 'stem cell of epidermis': {'basal cell of epidermis': {'limb basal cell of epidermis': {}}}},\n", + " 'leading edge cell': {},\n", + " 'vestibular dark cell': {},\n", + " 'hematopoietic cell': {'blood cell': {'granulocyte': {'basophil': {'mature basophil': {},\n", + " 'immature basophil': {'basophilic myelocyte': {},\n", + " 'basophilic metamyelocyte': {},\n", + " 'band form basophil': {}}},\n", + " 'eosinophil': {'mature eosinophil': {},\n", + " 'immature eosinophil': {'eosinophilic myelocyte': {},\n", + " 'eosinophilic metamyelocyte': {},\n", + " 'band form eosinophil': {'lung parenchyma resident eosinophil': {}}}},\n", + " 'neutrophil': {'mature neutrophil': {'band form neutrophil': {},\n", + " 'segmented neutrophil of bone marrow': {}},\n", + " 'immature neutrophil': {'neutrophilic myelocyte': {},\n", + " 'neutrophilic metamyelocyte': {}}}},\n", + " 'erythrocyte': {'nucleate erythrocyte': {},\n", + " 'enucleate erythrocyte': {'GlyA-positive erythrocyte': {},\n", + " 'Ly-76 high positive erythrocyte': {},\n", + " 'echinocyte': {},\n", + " 'fetal derived definitive erythrocyte': {}}},\n", + " 'platelet': {},\n", + " 'blood cell (sensu Nematoda and Protostomia)': {'hemocyte (sensu Arthropoda)': {'crystal cell': {'embryonic crystal cell': {},\n", + " 'lymph gland crystal cell': {}},\n", + " 'plasmatocyte': {'lymph gland plasmatocyte': {},\n", + " 'embryonic plasmatocyte': {}},\n", + " 'lamellocyte': {},\n", + " 'lymph gland hemocyte': {'lymph gland crystal cell': {},\n", + " 'lymph gland plasmatocyte': {}},\n", + " 'embryonic hemocyte': {'embryonic crystal cell': {},\n", + " 'embryonic plasmatocyte': {}}}},\n", + " 'peripheral blood mesothelial cell': {}},\n", + " 'leukocyte': {'professional antigen presenting cell': {'mature eosinophil': {},\n", + " 'macrophage': {'elicited macrophage': {'suppressor macrophage': {'kidney interstitial suppressor macrophage': {}},\n", + " 'inflammatory macrophage': {'kidney interstitial inflammatory macrophage': {}},\n", + " 'alternatively activated macrophage': {'kidney interstitial alternatively activated macrophage': {}}},\n", + " 'tissue-resident macrophage': {'Kupffer cell': {},\n", + " 'peritoneal macrophage': {},\n", + " 'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'mesangial phagocyte': {},\n", + " 'thymic macrophage': {'thymic medullary macrophage': {},\n", + " 'thymic cortical macrophage': {}},\n", + " 'secondary lymphoid organ macrophage': {'lymph node macrophage': {'lymph node subcapsular sinus macrophage': {},\n", + " 'lymph node tingible body macrophage': {}},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}},\n", + " 'mucosa-associated lymphoid tissue macrophage': {'gut-associated lymphoid tissue macrophage': {'gastrointestinal tract (lamina propria) macrophage': {'gastrointestinal tract (lamina propria) macrophage of small intestine': {},\n", + " 'gastrointestinal tract (lamina propria) macrophage of large intestine': {}},\n", + " 'tonsillar macrophage': {},\n", + " \"Peyer's patch macrophage\": {}},\n", + " 'nasal and broncial associated lymphoid tissue macrophage': {}}},\n", + " 'central nervous system macrophage': {'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'meningeal macrophage': {},\n", + " 'choroid-plexus macrophage': {},\n", + " 'perivascular macrophage': {}},\n", + " 'melanophage': {},\n", + " 'pleural macrophage': {},\n", + " 'bone marrow macrophage': {},\n", + " 'adipose macrophage': {'F4/80-negative adipose macrophage': {},\n", + " 'F4/80-positive adipose macrophage': {}},\n", + " 'kidney resident macrophage': {},\n", + " 'lung interstitial macrophage': {}},\n", + " 'epithelioid macrophage': {},\n", + " 'appendix macrophage': {},\n", + " 'colon macrophage': {},\n", + " 'macrophage of medullary sinus of lymph node': {},\n", + " 'anorectum macrophage': {},\n", + " 'lung macrophage': {'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'lung interstitial macrophage': {}},\n", + " 'Hofbauer cell': {}},\n", + " 'dendritic cell': {'plasmacytoid dendritic cell': {'thymic plasmacytoid dendritic cell': {},\n", + " 'CD11c-low plasmacytoid dendritic cell': {'immature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-negative plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-positive plasmacytoid dendritic cell': {}},\n", + " 'CD11c-negative plasmacytoid dendritic cell': {'immature CD11c-negative plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-negative plasmacytoid dendritic cell': {}},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {}},\n", + " 'conventional dendritic cell': {'Langerhans cell': {'CD1a-positive Langerhans cell': {'immature CD1a-positive Langerhans cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {}},\n", + " 'CD8_alpha-low Langerhans cell': {'immature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {}},\n", + " 'epidermal Langerhans cell': {}},\n", + " 'myeloid dendritic cell': {'myeloid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {},\n", + " 'CD1c-positive myeloid dendritic cell': {},\n", + " 'CD16-positive myeloid dendritic cell': {'immature CD16-positive myeloid dendritic cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'monocyte-derived dendritic cell': {}},\n", + " 'immature conventional dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'immature interstitial dendritic cell': {},\n", + " 'immature CD1a-positive Langerhans cell': {},\n", + " 'immature CD8_alpha-low Langerhans cell': {},\n", + " 'immature CD16-positive myeloid dendritic cell': {}},\n", + " 'mature conventional dendritic cell': {'mature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'thymic conventional dendritic cell': {'CD8alpha-positive thymic conventional dendritic cell': {},\n", + " 'CD8alpha-negative thymic conventional dendritic cell': {}},\n", + " 'CD8_alpha-negative CD11b-negative dendritic cell': {'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-negative dendritic cell': {}},\n", + " 'CD8_alpha-positive CD11b-negative dendritic cell': {'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {}},\n", + " 'CD103-positive dendritic cell': {'langerin-positive dermal dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {}},\n", + " 'adipose dendritic cell': {'SIRPa-positive adipose dendritic cell': {},\n", + " 'SIRPa-negative adipose dendritic cell': {}},\n", + " 'CD11b-positive dendritic cell': {'CD4-positive CD11b-positive dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {}},\n", + " 'dermal dendritic cell': {'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'langerin-positive dermal dendritic cell': {},\n", + " 'langerin-negative dermal dendritic cell': {},\n", + " 'CD14-positive dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD14-positive dermal dendritic cell': {}},\n", + " 'CD1a-positive dermal dendritic cell': {'immature CD1a-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}}},\n", + " 'interstitial dendritic cell': {'immature interstitial dendritic cell': {},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'kidney resident dendritic cell': {}},\n", + " 'Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell': {'liver CD103-negative dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {},\n", + " 'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}},\n", + " 'epidermal Langerhans cell': {},\n", + " 'small intestine serosal dendritic cell': {}},\n", + " 'langerin-positive lymph node dendritic cell': {'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {}},\n", + " 'langerin-negative, CD103-negative lymph node dendritic cell': {'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}}},\n", + " 'dendritic cell, human': {'myeloid dendritic cell, human': {},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'Axl+ dendritic cell, human': {}},\n", + " 'dendritic cell of appendix': {},\n", + " 'liver dendritic cell': {},\n", + " 'lung migratory dendritic cell': {}},\n", + " 'mature B cell': {'memory B cell': {'unswitched memory B cell': {'CD38-negative unswitched memory B cell': {'B220-positive CD38-negative unswitched memory B cell': {'B220-low CD38-negative unswitched memory B cell': {}}},\n", + " 'CD38-positive unswitched memory B cell': {'B220-positive CD38-positive unswitched memory B cell': {'B220-low CD38-positive unswitched memory B cell': {}}}},\n", + " 'class switched memory B cell': {'IgE memory B cell': {},\n", + " 'IgA memory B cell': {},\n", + " 'IgG memory B cell': {'CD38-positive IgG memory B cell': {'IgD-positive CD38-positive IgG memory B cell': {},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {}},\n", + " 'CD38-negative IgG memory B cell': {}},\n", + " 'IgG-negative class switched memory B cell': {'CD38-negative IgG-negative class switched memory B cell': {'CD24-positive CD38-negative IgG-negative class switched memory B cell': {},\n", + " 'CD24-negative CD38-negative IgG-negative class switched memory B cell': {}},\n", + " 'CD38-positive IgG-negative class switched memory B cell': {'B220-positive CD38-positive IgG-negative class switched memory B cell': {'B220-low CD38-positive IgG-negative class switched memory B cell': {}}}}},\n", + " 'IgD-negative memory B cell': {'Bm5 B cell': {},\n", + " 'IgM memory B cell': {},\n", + " 'double negative memory B cell': {'IgG-positive double negative memory B cell': {},\n", + " 'IgG-negative double negative memory B cell': {}},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {},\n", + " 'CD38-negative IgG memory B cell': {}}},\n", + " 'naive B cell': {'CD38-positive naive B cell': {'B220-positive CD38-positive naive B cell': {'B220-low CD38-positive naive B cell': {}}},\n", + " 'CD38-negative naive B cell': {}},\n", + " 'B-1 B cell': {'B-1a B cell': {}, 'B-1b B cell': {}},\n", + " 'B-2 B cell': {'follicular B cell': {'Bm1 B cell': {},\n", + " 'Bm2 B cell': {}},\n", + " 'fraction F mature B cell': {'Bm1 B cell': {}},\n", + " \"Peyer's patch B cell\": {}},\n", + " 'germinal center B cell': {'Bm3-delta B cell': {},\n", + " \"Bm2' B cell\": {},\n", + " 'Bm3 B cell': {},\n", + " 'Bm4 B cell': {},\n", + " 'centrocyte': {},\n", + " 'centroblast': {},\n", + " 'tonsil germinal center B cell': {}},\n", + " 'marginal zone B cell of spleen': {},\n", + " 'Be cell': {'Be1 Cell': {}, 'Be2 cell': {}},\n", + " 'regulatory B cell': {},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}},\n", + " 'marginal zone B cell of lymph node': {}}},\n", + " 'myeloid leukocyte': {'osteoclast': {'odontoclast': {'multinuclear odontoclast': {},\n", + " 'mononuclear odontoclast': {}},\n", + " 'mononuclear osteoclast': {'mononuclear odontoclast': {}},\n", + " 'multinuclear osteoclast': {'multinuclear odontoclast': {}}},\n", + " 'granulocyte': {'basophil': {'mature basophil': {},\n", + " 'immature basophil': {'basophilic myelocyte': {},\n", + " 'basophilic metamyelocyte': {},\n", + " 'band form basophil': {}}},\n", + " 'eosinophil': {'mature eosinophil': {},\n", + " 'immature eosinophil': {'eosinophilic myelocyte': {},\n", + " 'eosinophilic metamyelocyte': {},\n", + " 'band form eosinophil': {'lung parenchyma resident eosinophil': {}}}},\n", + " 'neutrophil': {'mature neutrophil': {'band form neutrophil': {},\n", + " 'segmented neutrophil of bone marrow': {}},\n", + " 'immature neutrophil': {'neutrophilic myelocyte': {},\n", + " 'neutrophilic metamyelocyte': {}}}},\n", + " 'mast cell': {'connective tissue type mast cell': {},\n", + " 'mucosal type mast cell': {}},\n", + " 'macrophage': {'elicited macrophage': {'suppressor macrophage': {'kidney interstitial suppressor macrophage': {}},\n", + " 'inflammatory macrophage': {'kidney interstitial inflammatory macrophage': {}},\n", + " 'alternatively activated macrophage': {'kidney interstitial alternatively activated macrophage': {}}},\n", + " 'tissue-resident macrophage': {'Kupffer cell': {},\n", + " 'peritoneal macrophage': {},\n", + " 'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'mesangial phagocyte': {},\n", + " 'thymic macrophage': {'thymic medullary macrophage': {},\n", + " 'thymic cortical macrophage': {}},\n", + " 'secondary lymphoid organ macrophage': {'lymph node macrophage': {'lymph node subcapsular sinus macrophage': {},\n", + " 'lymph node tingible body macrophage': {}},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}},\n", + " 'mucosa-associated lymphoid tissue macrophage': {'gut-associated lymphoid tissue macrophage': {'gastrointestinal tract (lamina propria) macrophage': {'gastrointestinal tract (lamina propria) macrophage of small intestine': {},\n", + " 'gastrointestinal tract (lamina propria) macrophage of large intestine': {}},\n", + " 'tonsillar macrophage': {},\n", + " \"Peyer's patch macrophage\": {}},\n", + " 'nasal and broncial associated lymphoid tissue macrophage': {}}},\n", + " 'central nervous system macrophage': {'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'meningeal macrophage': {},\n", + " 'choroid-plexus macrophage': {},\n", + " 'perivascular macrophage': {}},\n", + " 'melanophage': {},\n", + " 'pleural macrophage': {},\n", + " 'bone marrow macrophage': {},\n", + " 'adipose macrophage': {'F4/80-negative adipose macrophage': {},\n", + " 'F4/80-positive adipose macrophage': {}},\n", + " 'kidney resident macrophage': {},\n", + " 'lung interstitial macrophage': {}},\n", + " 'epithelioid macrophage': {},\n", + " 'appendix macrophage': {},\n", + " 'colon macrophage': {},\n", + " 'macrophage of medullary sinus of lymph node': {},\n", + " 'anorectum macrophage': {},\n", + " 'lung macrophage': {'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'lung interstitial macrophage': {}},\n", + " 'Hofbauer cell': {}},\n", + " 'Langerhans cell': {'CD1a-positive Langerhans cell': {'immature CD1a-positive Langerhans cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {}},\n", + " 'CD8_alpha-low Langerhans cell': {'immature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {}},\n", + " 'epidermal Langerhans cell': {}},\n", + " 'monocyte': {'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'non-classical monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}},\n", + " 'CD14-low, CD16-positive monocyte': {}},\n", + " 'CD115-positive monocyte': {'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}},\n", + " 'CD14-positive monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'CD14-low, CD16-positive monocyte': {},\n", + " 'CD14-positive, CD16-positive monocyte': {'CD14-positive, CD16-low monocyte': {}}},\n", + " 'intermediate monocyte': {'CD14-positive, CD16-low monocyte': {},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}}},\n", + " 'multinucleated giant cell': {},\n", + " 'myeloid dendritic cell': {'myeloid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {},\n", + " 'CD1c-positive myeloid dendritic cell': {},\n", + " 'CD16-positive myeloid dendritic cell': {'immature CD16-positive myeloid dendritic cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'monocyte-derived dendritic cell': {}},\n", + " 'immature conventional dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'immature interstitial dendritic cell': {},\n", + " 'immature CD1a-positive Langerhans cell': {},\n", + " 'immature CD8_alpha-low Langerhans cell': {},\n", + " 'immature CD16-positive myeloid dendritic cell': {}},\n", + " 'mature conventional dendritic cell': {'mature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'myeloid suppressor cell': {'Gr1-high myeloid suppressor cell': {},\n", + " 'Gr1-low myeloid suppressor cell': {}},\n", + " 'immature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-negative CD11b-negative dendritic cell': {'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-negative dendritic cell': {}},\n", + " 'CD4-positive CD11b-positive dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {}},\n", + " 'CD8_alpha-positive CD11b-negative dendritic cell': {'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {}},\n", + " 'CD103-positive dendritic cell': {'langerin-positive dermal dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {}},\n", + " 'adipose dendritic cell': {'SIRPa-positive adipose dendritic cell': {},\n", + " 'SIRPa-negative adipose dendritic cell': {}}},\n", + " 'mononuclear cell': {'dendritic cell': {'plasmacytoid dendritic cell': {'thymic plasmacytoid dendritic cell': {},\n", + " 'CD11c-low plasmacytoid dendritic cell': {'immature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-negative plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-positive plasmacytoid dendritic cell': {}},\n", + " 'CD11c-negative plasmacytoid dendritic cell': {'immature CD11c-negative plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-negative plasmacytoid dendritic cell': {}},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {}},\n", + " 'conventional dendritic cell': {'Langerhans cell': {'CD1a-positive Langerhans cell': {'immature CD1a-positive Langerhans cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {}},\n", + " 'CD8_alpha-low Langerhans cell': {'immature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {}},\n", + " 'epidermal Langerhans cell': {}},\n", + " 'myeloid dendritic cell': {'myeloid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {},\n", + " 'CD1c-positive myeloid dendritic cell': {},\n", + " 'CD16-positive myeloid dendritic cell': {'immature CD16-positive myeloid dendritic cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'monocyte-derived dendritic cell': {}},\n", + " 'immature conventional dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'immature interstitial dendritic cell': {},\n", + " 'immature CD1a-positive Langerhans cell': {},\n", + " 'immature CD8_alpha-low Langerhans cell': {},\n", + " 'immature CD16-positive myeloid dendritic cell': {}},\n", + " 'mature conventional dendritic cell': {'mature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'thymic conventional dendritic cell': {'CD8alpha-positive thymic conventional dendritic cell': {},\n", + " 'CD8alpha-negative thymic conventional dendritic cell': {}},\n", + " 'CD8_alpha-negative CD11b-negative dendritic cell': {'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-negative dendritic cell': {}},\n", + " 'CD8_alpha-positive CD11b-negative dendritic cell': {'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {}},\n", + " 'CD103-positive dendritic cell': {'langerin-positive dermal dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {}},\n", + " 'adipose dendritic cell': {'SIRPa-positive adipose dendritic cell': {},\n", + " 'SIRPa-negative adipose dendritic cell': {}},\n", + " 'CD11b-positive dendritic cell': {'CD4-positive CD11b-positive dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {}},\n", + " 'dermal dendritic cell': {'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'langerin-positive dermal dendritic cell': {},\n", + " 'langerin-negative dermal dendritic cell': {},\n", + " 'CD14-positive dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD14-positive dermal dendritic cell': {}},\n", + " 'CD1a-positive dermal dendritic cell': {'immature CD1a-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}}},\n", + " 'interstitial dendritic cell': {'immature interstitial dendritic cell': {},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'kidney resident dendritic cell': {}},\n", + " 'Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell': {'liver CD103-negative dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {},\n", + " 'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}},\n", + " 'epidermal Langerhans cell': {},\n", + " 'small intestine serosal dendritic cell': {}},\n", + " 'langerin-positive lymph node dendritic cell': {'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {}},\n", + " 'langerin-negative, CD103-negative lymph node dendritic cell': {'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}}},\n", + " 'dendritic cell, human': {'myeloid dendritic cell, human': {},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'Axl+ dendritic cell, human': {}},\n", + " 'dendritic cell of appendix': {},\n", + " 'liver dendritic cell': {},\n", + " 'lung migratory dendritic cell': {}},\n", + " 'lymphocyte': {'T cell': {'alpha-beta T cell': {'immature alpha-beta T cell': {'double-positive, alpha-beta thymocyte': {'resting double-positive thymocyte': {},\n", + " 'double-positive blast': {},\n", + " 'CD69-positive double-positive thymocyte': {},\n", + " 'CD4-intermediate, CD8-positive double-positive thymocyte': {},\n", + " 'CD4-positive, CD8-intermediate double-positive thymocyte': {}},\n", + " 'CD4-positive, alpha-beta thymocyte': {'CD24-positive, CD4 single-positive thymocyte': {},\n", + " 'CD69-positive, CD4-positive single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta thymocyte': {'CD24-positive, CD8 single-positive thymocyte': {},\n", + " 'CD69-positive, CD8-positive single-positive thymocyte': {}},\n", + " 'immature NK T cell': {'immature NK T cell stage I': {},\n", + " 'immature NK T cell stage II': {},\n", + " 'immature NK T cell stage III': {},\n", + " 'immature NK T cell stage IV': {}}},\n", + " 'mature alpha-beta T cell': {'CD4-positive, alpha-beta T cell': {'CD4-positive helper T cell': {'T-helper 1 cell': {},\n", + " 'T-helper 2 cell': {},\n", + " 'T-helper 17 cell': {},\n", + " 'Tr1 cell': {},\n", + " 'T-helper 22 cell': {},\n", + " 'T follicular helper cell': {'germinal center T cell': {}},\n", + " 'T-helper 9 cell': {}},\n", + " 'CD4-positive, CD25-positive, alpha-beta regulatory T cell': {'induced T-regulatory cell': {},\n", + " 'natural T-regulatory cell': {},\n", + " 'CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell': {'naive CCR4-positive regulatory T cell': {},\n", + " 'memory CCR4-positive regulatory T cell': {},\n", + " 'activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human': {}},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}}},\n", + " 'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'naive thymus-derived CD4-positive, alpha-beta T cell': {},\n", + " 'activated CD4-positive, alpha-beta T cell': {'activated CD4-positive, alpha-beta T cell, human': {}},\n", + " 'CD4-positive, alpha-beta memory T cell': {'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD4-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD4-positive, alpha-beta T cell': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}},\n", + " 'lung resident memory CD4-positive, alpha-beta T cell': {}},\n", + " 'CD4-positive, alpha-beta cytotoxic T cell': {},\n", + " 'effector CD4-positive, alpha-beta T cell': {},\n", + " 'CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'T-helper 2 cell': {}},\n", + " 'mature CD4 single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta T cell': {'CD8-positive, alpha-beta cytotoxic T cell': {},\n", + " 'CD8-positive, alpha-beta regulatory T cell': {'CD8-positive, CD25-positive, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CD28-negative, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CXCR3-positive, alpha-beta regulatory T cell': {}},\n", + " 'naive thymus-derived CD8-positive, alpha-beta T cell': {},\n", + " 'activated CD8-positive, alpha-beta T cell': {'activated CD8-positive, alpha-beta T cell, human': {}},\n", + " 'CD8-positive, alpha-beta cytokine secreting effector T cell': {'Tc1 cell': {},\n", + " 'Tc2 cell': {},\n", + " 'Tc17 cell': {}},\n", + " 'CD8-positive, alpha-beta memory T cell': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD8-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD8-positive, alpha-beta T cell': {},\n", + " 'effector memory CD8-positive, alpha-beta T cell': {}},\n", + " 'lung resident memory CD8-positive, alpha-beta T cell': {'lung resident memory CD8-positive, CD103-positive, alpha-beta T cell': {}}},\n", + " 'effector CD8-positive, alpha-beta T cell': {},\n", + " 'CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'Tc2 cell': {}},\n", + " 'mature CD8 single-positive thymocyte': {}},\n", + " 'alpha-beta intraepithelial T cell': {'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'CD8-alpha-beta-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD4-negative, CD8-negative, alpha-beta intraepithelial T cell': {}},\n", + " 'mature NK T cell': {'type I NK T cell': {'CD4-positive type I NK T cell': {'activated CD4-positive type I NK T cell': {},\n", + " 'CD4-positive type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-positive type I NK T cell secreting interleukin-4': {}},\n", + " 'CD4-negative, CD8-negative type I NK T cell': {'activated CD4-negative, CD8-negative type I NK T cell': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interleukin-4': {}}},\n", + " 'type II NK T cell': {'activated type II NK T cell': {},\n", + " 'type II NK T cell secreting interferon-gamma': {},\n", + " 'type II NK T cell secreting interleukin-4': {}}},\n", + " 'mucosal invariant T cell': {},\n", + " 'effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {}}}},\n", + " 'gamma-delta T cell': {'immature gamma-delta T cell': {'CD25-positive, CD27-positive immature gamma-delta T cell': {}},\n", + " 'mature gamma-delta T cell': {'gamma-delta intraepithelial T cell': {'CD8-alpha alpha positive, gamma-delta intraepithelial T cell': {'Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell': {},\n", + " 'Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell': {}},\n", + " 'CD4-negative CD8-negative gamma-delta intraepithelial T cell': {}},\n", + " 'dendritic epidermal T cell': {},\n", + " 'CD27-positive gamma-delta T cell': {},\n", + " 'CD27-negative gamma-delta T cell': {}},\n", + " 'gamma-delta thymocyte': {'immature Vgamma2-positive thymocyte': {},\n", + " 'mature Vgamma2-positive thymocyte': {},\n", + " 'immature Vgamma2-negative thymocyte': {},\n", + " 'mature Vgamma2-negative thymocyte': {},\n", + " 'Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {'mature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {},\n", + " 'immature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {}},\n", + " 'Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {'immature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {},\n", + " 'mature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {}}}},\n", + " 'mature T cell': {'mature alpha-beta T cell': {'CD4-positive, alpha-beta T cell': {'CD4-positive helper T cell': {'T-helper 1 cell': {},\n", + " 'T-helper 2 cell': {},\n", + " 'T-helper 17 cell': {},\n", + " 'Tr1 cell': {},\n", + " 'T-helper 22 cell': {},\n", + " 'T follicular helper cell': {'germinal center T cell': {}},\n", + " 'T-helper 9 cell': {}},\n", + " 'CD4-positive, CD25-positive, alpha-beta regulatory T cell': {'induced T-regulatory cell': {},\n", + " 'natural T-regulatory cell': {},\n", + " 'CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell': {'naive CCR4-positive regulatory T cell': {},\n", + " 'memory CCR4-positive regulatory T cell': {},\n", + " 'activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human': {}},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}}},\n", + " 'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'naive thymus-derived CD4-positive, alpha-beta T cell': {},\n", + " 'activated CD4-positive, alpha-beta T cell': {'activated CD4-positive, alpha-beta T cell, human': {}},\n", + " 'CD4-positive, alpha-beta memory T cell': {'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD4-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD4-positive, alpha-beta T cell': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}},\n", + " 'lung resident memory CD4-positive, alpha-beta T cell': {}},\n", + " 'CD4-positive, alpha-beta cytotoxic T cell': {},\n", + " 'effector CD4-positive, alpha-beta T cell': {},\n", + " 'CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'T-helper 2 cell': {}},\n", + " 'mature CD4 single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta T cell': {'CD8-positive, alpha-beta cytotoxic T cell': {},\n", + " 'CD8-positive, alpha-beta regulatory T cell': {'CD8-positive, CD25-positive, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CD28-negative, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CXCR3-positive, alpha-beta regulatory T cell': {}},\n", + " 'naive thymus-derived CD8-positive, alpha-beta T cell': {},\n", + " 'activated CD8-positive, alpha-beta T cell': {'activated CD8-positive, alpha-beta T cell, human': {}},\n", + " 'CD8-positive, alpha-beta cytokine secreting effector T cell': {'Tc1 cell': {},\n", + " 'Tc2 cell': {},\n", + " 'Tc17 cell': {}},\n", + " 'CD8-positive, alpha-beta memory T cell': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD8-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD8-positive, alpha-beta T cell': {},\n", + " 'effector memory CD8-positive, alpha-beta T cell': {}},\n", + " 'lung resident memory CD8-positive, alpha-beta T cell': {'lung resident memory CD8-positive, CD103-positive, alpha-beta T cell': {}}},\n", + " 'effector CD8-positive, alpha-beta T cell': {},\n", + " 'CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'Tc2 cell': {}},\n", + " 'mature CD8 single-positive thymocyte': {}},\n", + " 'alpha-beta intraepithelial T cell': {'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'CD8-alpha-beta-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD4-negative, CD8-negative, alpha-beta intraepithelial T cell': {}},\n", + " 'mature NK T cell': {'type I NK T cell': {'CD4-positive type I NK T cell': {'activated CD4-positive type I NK T cell': {},\n", + " 'CD4-positive type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-positive type I NK T cell secreting interleukin-4': {}},\n", + " 'CD4-negative, CD8-negative type I NK T cell': {'activated CD4-negative, CD8-negative type I NK T cell': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interleukin-4': {}}},\n", + " 'type II NK T cell': {'activated type II NK T cell': {},\n", + " 'type II NK T cell secreting interferon-gamma': {},\n", + " 'type II NK T cell secreting interleukin-4': {}}},\n", + " 'mucosal invariant T cell': {},\n", + " 'effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {}}},\n", + " 'mature gamma-delta T cell': {'gamma-delta intraepithelial T cell': {'CD8-alpha alpha positive, gamma-delta intraepithelial T cell': {'Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell': {},\n", + " 'Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell': {}},\n", + " 'CD4-negative CD8-negative gamma-delta intraepithelial T cell': {}},\n", + " 'dendritic epidermal T cell': {},\n", + " 'CD27-positive gamma-delta T cell': {},\n", + " 'CD27-negative gamma-delta T cell': {}},\n", + " 'memory T cell': {'CD4-positive, alpha-beta memory T cell': {'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD4-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD4-positive, alpha-beta T cell': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}},\n", + " 'lung resident memory CD4-positive, alpha-beta T cell': {}},\n", + " 'CD8-positive, alpha-beta memory T cell': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD8-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD8-positive, alpha-beta T cell': {},\n", + " 'effector memory CD8-positive, alpha-beta T cell': {}},\n", + " 'lung resident memory CD8-positive, alpha-beta T cell': {'lung resident memory CD8-positive, CD103-positive, alpha-beta T cell': {}}}},\n", + " 'regulatory T cell': {'CD4-positive, CD25-positive, alpha-beta regulatory T cell': {'induced T-regulatory cell': {},\n", + " 'natural T-regulatory cell': {},\n", + " 'CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell': {'naive CCR4-positive regulatory T cell': {},\n", + " 'memory CCR4-positive regulatory T cell': {},\n", + " 'activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human': {}},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}}},\n", + " 'CD8-positive, alpha-beta regulatory T cell': {'CD8-positive, CD25-positive, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CD28-negative, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CXCR3-positive, alpha-beta regulatory T cell': {}},\n", + " 'Tr1 cell': {},\n", + " 'T follicular regulatory cell': {}},\n", + " 'naive T cell': {'naive thymus-derived CD4-positive, alpha-beta T cell': {},\n", + " 'naive thymus-derived CD8-positive, alpha-beta T cell': {},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}}},\n", + " 'effector T cell': {'cytotoxic T cell': {},\n", + " 'helper T cell': {},\n", + " 'effector CD4-positive, alpha-beta T cell': {},\n", + " 'effector CD8-positive, alpha-beta T cell': {},\n", + " 'innate effector T cell': {},\n", + " 'exhausted T cell': {}},\n", + " 'intraepithelial lymphocyte': {'alpha-beta intraepithelial T cell': {'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'CD8-alpha-beta-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD4-negative, CD8-negative, alpha-beta intraepithelial T cell': {}},\n", + " 'gamma-delta intraepithelial T cell': {'CD8-alpha alpha positive, gamma-delta intraepithelial T cell': {'Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell': {},\n", + " 'Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell': {}},\n", + " 'CD4-negative CD8-negative gamma-delta intraepithelial T cell': {}}},\n", + " \"small intestine Peyer's patch T cell\": {}},\n", + " 'immature T cell': {'immature alpha-beta T cell': {'double-positive, alpha-beta thymocyte': {'resting double-positive thymocyte': {},\n", + " 'double-positive blast': {},\n", + " 'CD69-positive double-positive thymocyte': {},\n", + " 'CD4-intermediate, CD8-positive double-positive thymocyte': {},\n", + " 'CD4-positive, CD8-intermediate double-positive thymocyte': {}},\n", + " 'CD4-positive, alpha-beta thymocyte': {'CD24-positive, CD4 single-positive thymocyte': {},\n", + " 'CD69-positive, CD4-positive single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta thymocyte': {'CD24-positive, CD8 single-positive thymocyte': {},\n", + " 'CD69-positive, CD8-positive single-positive thymocyte': {}},\n", + " 'immature NK T cell': {'immature NK T cell stage I': {},\n", + " 'immature NK T cell stage II': {},\n", + " 'immature NK T cell stage III': {},\n", + " 'immature NK T cell stage IV': {}}},\n", + " 'immature gamma-delta T cell': {'CD25-positive, CD27-positive immature gamma-delta T cell': {}},\n", + " 'thymocyte': {'immature single positive thymocyte': {},\n", + " 'double-positive, alpha-beta thymocyte': {'resting double-positive thymocyte': {},\n", + " 'double-positive blast': {},\n", + " 'CD69-positive double-positive thymocyte': {},\n", + " 'CD4-intermediate, CD8-positive double-positive thymocyte': {},\n", + " 'CD4-positive, CD8-intermediate double-positive thymocyte': {}},\n", + " 'CD4-positive, alpha-beta thymocyte': {'CD24-positive, CD4 single-positive thymocyte': {},\n", + " 'CD69-positive, CD4-positive single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta thymocyte': {'CD24-positive, CD8 single-positive thymocyte': {},\n", + " 'CD69-positive, CD8-positive single-positive thymocyte': {}},\n", + " 'CD25-positive, CD27-positive immature gamma-delta T cell': {},\n", + " 'fetal thymocyte': {'immature dendritic epithelial T cell precursor': {},\n", + " 'immature Vgamma2-positive fetal thymocyte': {},\n", + " 'mature dendritic epithelial T cell precursor': {},\n", + " 'mature Vgamma2-positive fetal thymocyte': {}},\n", + " 'double negative thymocyte': {'DN2 thymocyte': {'DN2a thymocyte': {},\n", + " 'DN2b thymocyte': {}},\n", + " 'DN3 thymocyte': {},\n", + " 'DN4 thymocyte': {},\n", + " 'gamma-delta thymocyte': {'immature Vgamma2-positive thymocyte': {},\n", + " 'mature Vgamma2-positive thymocyte': {},\n", + " 'immature Vgamma2-negative thymocyte': {},\n", + " 'mature Vgamma2-negative thymocyte': {},\n", + " 'Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {'mature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {},\n", + " 'immature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {}},\n", + " 'Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {'immature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {},\n", + " 'mature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {}}},\n", + " 'specified double negative thymocyte (Homo sapiens)': {},\n", + " 'committed double negative thymocyte (Homo sapiens)': {},\n", + " 'rearranging double negative thymocyte (Homo sapiens)': {},\n", + " 'double negative T regulatory cell': {}},\n", + " 'CD8aa(I) thymocyte': {},\n", + " 'CD8aa(II) thymocyte': {}}},\n", + " 'T cell of appendix': {},\n", + " 'T cell of medullary sinus of lymph node': {},\n", + " 'T cell of anorectum': {},\n", + " 'lymph node paracortex T cell': {}},\n", + " 'lymphocyte of B lineage': {'B cell': {'B cell, CD19-positive': {'mature B cell': {'memory B cell': {'unswitched memory B cell': {'CD38-negative unswitched memory B cell': {'B220-positive CD38-negative unswitched memory B cell': {'B220-low CD38-negative unswitched memory B cell': {}}},\n", + " 'CD38-positive unswitched memory B cell': {'B220-positive CD38-positive unswitched memory B cell': {'B220-low CD38-positive unswitched memory B cell': {}}}},\n", + " 'class switched memory B cell': {'IgE memory B cell': {},\n", + " 'IgA memory B cell': {},\n", + " 'IgG memory B cell': {'CD38-positive IgG memory B cell': {'IgD-positive CD38-positive IgG memory B cell': {},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {}},\n", + " 'CD38-negative IgG memory B cell': {}},\n", + " 'IgG-negative class switched memory B cell': {'CD38-negative IgG-negative class switched memory B cell': {'CD24-positive CD38-negative IgG-negative class switched memory B cell': {},\n", + " 'CD24-negative CD38-negative IgG-negative class switched memory B cell': {}},\n", + " 'CD38-positive IgG-negative class switched memory B cell': {'B220-positive CD38-positive IgG-negative class switched memory B cell': {'B220-low CD38-positive IgG-negative class switched memory B cell': {}}}}},\n", + " 'IgD-negative memory B cell': {'Bm5 B cell': {},\n", + " 'IgM memory B cell': {},\n", + " 'double negative memory B cell': {'IgG-positive double negative memory B cell': {},\n", + " 'IgG-negative double negative memory B cell': {}},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {},\n", + " 'CD38-negative IgG memory B cell': {}}},\n", + " 'naive B cell': {'CD38-positive naive B cell': {'B220-positive CD38-positive naive B cell': {'B220-low CD38-positive naive B cell': {}}},\n", + " 'CD38-negative naive B cell': {}},\n", + " 'B-1 B cell': {'B-1a B cell': {}, 'B-1b B cell': {}},\n", + " 'B-2 B cell': {'follicular B cell': {'Bm1 B cell': {},\n", + " 'Bm2 B cell': {}},\n", + " 'fraction F mature B cell': {'Bm1 B cell': {}},\n", + " \"Peyer's patch B cell\": {}},\n", + " 'germinal center B cell': {'Bm3-delta B cell': {},\n", + " \"Bm2' B cell\": {},\n", + " 'Bm3 B cell': {},\n", + " 'Bm4 B cell': {},\n", + " 'centrocyte': {},\n", + " 'centroblast': {},\n", + " 'tonsil germinal center B cell': {}},\n", + " 'marginal zone B cell of spleen': {},\n", + " 'Be cell': {'Be1 Cell': {}, 'Be2 cell': {}},\n", + " 'regulatory B cell': {},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}},\n", + " 'marginal zone B cell of lymph node': {}},\n", + " 'immature B cell': {'fraction E immature B cell': {},\n", + " 'CD38-negative immature B cell': {}},\n", + " 'precursor B cell': {'pre-B-II cell': {'small pre-B-II cell': {'CD22-positive, CD38-low small pre-B cell': {}},\n", + " 'large pre-B-II cell': {'preBCR-positive large pre-B-II cell': {'CD38-high pre-BCR positive cell': {}},\n", + " 'preBCR-negative large pre-B-II cell': {}}},\n", + " 'pre-B-I cell': {},\n", + " 'late pro-B cell': {},\n", + " \"fraction C' precursor B cell\": {},\n", + " 'fraction B/C precursor B cell': {'fraction B precursor B cell': {},\n", + " 'fraction C precursor B cell': {},\n", + " 'fraction D precursor B cell': {}}},\n", + " 'transitional stage B cell': {'T1 B cell': {},\n", + " 'T2 B cell': {},\n", + " 'T3 B cell': {}}},\n", + " 'B cell of appendix': {},\n", + " 'lymph node mantle zone B cell': {},\n", + " 'B cell of medullary sinus of lymph node': {},\n", + " 'B cell of anorectum': {},\n", + " 'monocytoid B cell': {}},\n", + " 'antibody secreting cell': {'plasma cell': {'long lived plasma cell': {'IgE plasma cell': {},\n", + " 'IgG plasma cell': {},\n", + " 'IgM plasma cell': {},\n", + " 'IgA plasma cell': {}},\n", + " 'short lived plasma cell': {'IgE short lived plasma cell': {},\n", + " 'IgA short lived plasma cell': {},\n", + " 'IgG short lived plasma cell': {},\n", + " 'IgM short lived plasma cell': {}},\n", + " 'plasma cell of appendix': {},\n", + " 'plasma cell of medullary sinus of lymph node': {}},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}}},\n", + " 'lymphocyte of B lineage, CD19-positive': {'B cell, CD19-positive': {'mature B cell': {'memory B cell': {'unswitched memory B cell': {'CD38-negative unswitched memory B cell': {'B220-positive CD38-negative unswitched memory B cell': {'B220-low CD38-negative unswitched memory B cell': {}}},\n", + " 'CD38-positive unswitched memory B cell': {'B220-positive CD38-positive unswitched memory B cell': {'B220-low CD38-positive unswitched memory B cell': {}}}},\n", + " 'class switched memory B cell': {'IgE memory B cell': {},\n", + " 'IgA memory B cell': {},\n", + " 'IgG memory B cell': {'CD38-positive IgG memory B cell': {'IgD-positive CD38-positive IgG memory B cell': {},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {}},\n", + " 'CD38-negative IgG memory B cell': {}},\n", + " 'IgG-negative class switched memory B cell': {'CD38-negative IgG-negative class switched memory B cell': {'CD24-positive CD38-negative IgG-negative class switched memory B cell': {},\n", + " 'CD24-negative CD38-negative IgG-negative class switched memory B cell': {}},\n", + " 'CD38-positive IgG-negative class switched memory B cell': {'B220-positive CD38-positive IgG-negative class switched memory B cell': {'B220-low CD38-positive IgG-negative class switched memory B cell': {}}}}},\n", + " 'IgD-negative memory B cell': {'Bm5 B cell': {},\n", + " 'IgM memory B cell': {},\n", + " 'double negative memory B cell': {'IgG-positive double negative memory B cell': {},\n", + " 'IgG-negative double negative memory B cell': {}},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {},\n", + " 'CD38-negative IgG memory B cell': {}}},\n", + " 'naive B cell': {'CD38-positive naive B cell': {'B220-positive CD38-positive naive B cell': {'B220-low CD38-positive naive B cell': {}}},\n", + " 'CD38-negative naive B cell': {}},\n", + " 'B-1 B cell': {'B-1a B cell': {}, 'B-1b B cell': {}},\n", + " 'B-2 B cell': {'follicular B cell': {'Bm1 B cell': {},\n", + " 'Bm2 B cell': {}},\n", + " 'fraction F mature B cell': {'Bm1 B cell': {}},\n", + " \"Peyer's patch B cell\": {}},\n", + " 'germinal center B cell': {'Bm3-delta B cell': {},\n", + " \"Bm2' B cell\": {},\n", + " 'Bm3 B cell': {},\n", + " 'Bm4 B cell': {},\n", + " 'centrocyte': {},\n", + " 'centroblast': {},\n", + " 'tonsil germinal center B cell': {}},\n", + " 'marginal zone B cell of spleen': {},\n", + " 'Be cell': {'Be1 Cell': {}, 'Be2 cell': {}},\n", + " 'regulatory B cell': {},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}},\n", + " 'marginal zone B cell of lymph node': {}},\n", + " 'immature B cell': {'fraction E immature B cell': {},\n", + " 'CD38-negative immature B cell': {}},\n", + " 'precursor B cell': {'pre-B-II cell': {'small pre-B-II cell': {'CD22-positive, CD38-low small pre-B cell': {}},\n", + " 'large pre-B-II cell': {'preBCR-positive large pre-B-II cell': {'CD38-high pre-BCR positive cell': {}},\n", + " 'preBCR-negative large pre-B-II cell': {}}},\n", + " 'pre-B-I cell': {},\n", + " 'late pro-B cell': {},\n", + " \"fraction C' precursor B cell\": {},\n", + " 'fraction B/C precursor B cell': {'fraction B precursor B cell': {},\n", + " 'fraction C precursor B cell': {},\n", + " 'fraction D precursor B cell': {}}},\n", + " 'transitional stage B cell': {'T1 B cell': {},\n", + " 'T2 B cell': {},\n", + " 'T3 B cell': {}}}},\n", + " 'B-lymphoblast': {}},\n", + " 'innate lymphoid cell': {'group 1 innate lymphoid cell': {'natural killer cell': {'immature natural killer cell': {'CD56-positive, CD161-positive immature natural killer cell, human': {},\n", + " 'CD56-negative, CD161-positive immature natural killer cell, human': {},\n", + " 'CD27-low, CD11b-low immature natural killer cell, mouse': {},\n", + " 'Dx5-negative, NK1.1-positive immature natural killer cell, mouse': {}},\n", + " 'mature natural killer cell': {'CD16-negative, CD56-bright natural killer cell, human': {},\n", + " 'CD16-positive, CD56-dim natural killer cell, human': {},\n", + " 'decidual natural killer cell, human': {},\n", + " 'CD27-high, CD11b-high natural killer cell, mouse': {},\n", + " 'CD27-low, CD11b-high natural killer cell, mouse': {},\n", + " 'CD27-high, CD11b-low natural killer cell, mouse': {},\n", + " 'NK1.1-positive natural killer cell, mouse': {'CD11b-positive, CD27-positive natural killer cell, mouse': {},\n", + " 'NKGA2-positive natural killer cell, mouse': {},\n", + " 'Ly49D-positive natural killer cell, mouse': {},\n", + " 'CD94-positive natural killer cell, mouse': {'CD94-positive Ly49CI-positive natural killer cell, mouse': {}},\n", + " 'Ly49CI-positive natural killer cell, mouse': {'CD94-positive Ly49CI-positive natural killer cell, mouse': {}},\n", + " 'Ly49H-positive natural killer cell, mouse': {},\n", + " 'Ly49D-negative natural killer cell, mouse': {},\n", + " 'Ly49CI-negative natural killer cell, mouse': {},\n", + " 'CD94-negative natural killer cell, mouse': {},\n", + " 'Ly49H-negative natural killer cell, mouse': {}}},\n", + " 'pre-natural killer cell': {},\n", + " 'CD94-negative, Ly49CI-negative natural killer cell, mouse': {},\n", + " 'hepatic pit cell': {}},\n", + " 'ILC1': {'ILC1, human': {}}},\n", + " 'group 2 innate lymphoid cell': {'group 2 innate lymphoid cell, human': {},\n", + " 'group 2 innate lymphoid cell, mouse': {}},\n", + " 'group 3 innate lymphoid cell': {'group 3 innate lymphoid cell, human': {'NKp44-positive group 3 innate lymphoid cell, human': {},\n", + " 'NKp44-negative group 3 innate lymphoid cell, human': {}},\n", + " 'lymphoid tissue–inducer cell': {}},\n", + " 'immature innate lymphoid cell': {'immature natural killer cell': {'CD56-positive, CD161-positive immature natural killer cell, human': {},\n", + " 'CD56-negative, CD161-positive immature natural killer cell, human': {},\n", + " 'CD27-low, CD11b-low immature natural killer cell, mouse': {},\n", + " 'Dx5-negative, NK1.1-positive immature natural killer cell, mouse': {}},\n", + " 'CD34-negative, CD117-positive innate lymphoid cell, human': {'CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human': {},\n", + " 'KLRG1-positive innate lymphoid cell, human': {}},\n", + " 'CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human': {'NKp46-positive innate lymphoid cell, human': {}}}},\n", + " 'natural helper lymphocyte': {},\n", + " \"Peyer's patch lymphocyte\": {\"Peyer's patch B cell\": {},\n", + " \"small intestine Peyer's patch T cell\": {}},\n", + " 'lymphocyte of large intestine lamina propria': {},\n", + " 'lymphocyte of small intestine lamina propria': {},\n", + " 'lymphoblast': {'B-lymphoblast': {}},\n", + " 'blood lymphocyte': {'peripheral blood lymphocyte': {}}},\n", + " 'monocyte': {'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'non-classical monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}},\n", + " 'CD14-low, CD16-positive monocyte': {}},\n", + " 'CD115-positive monocyte': {'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}},\n", + " 'CD14-positive monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'CD14-low, CD16-positive monocyte': {},\n", + " 'CD14-positive, CD16-positive monocyte': {'CD14-positive, CD16-low monocyte': {}}},\n", + " 'intermediate monocyte': {'CD14-positive, CD16-low monocyte': {},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}}},\n", + " 'mononuclear osteoclast': {'mononuclear odontoclast': {}},\n", + " 'mononuclear cell of bone marrow': {},\n", + " 'peripheral blood mononuclear cell': {'blood lymphocyte': {'peripheral blood lymphocyte': {}}},\n", + " 'mononuclear cell of umbilical cord': {}},\n", + " 'nongranular leukocyte': {'neutrophilic myelocyte': {},\n", + " 'eosinophilic myelocyte': {},\n", + " 'basophilic myelocyte': {}},\n", + " 'splenocyte': {'marginal zone B cell of spleen': {},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}}}},\n", + " 'myeloid cell': {'monoblast': {},\n", + " 'megakaryocyte-erythroid progenitor cell': {'CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell': {},\n", + " 'Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell': {}},\n", + " 'platelet': {},\n", + " 'megakaryocyte progenitor cell': {'CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell': {},\n", + " 'Kit-positive megakaryocyte progenitor cell': {},\n", + " 'CD34-positive, CD41-positive, CD42-negative megakaryocyte progenitor cell': {}},\n", + " 'megakaryocyte': {'CD34-negative, CD41-positive, CD42-positive megakaryocyte cell': {},\n", + " 'CD9-positive, CD41-positive megakaryocyte cell': {},\n", + " 'lung megakaryocyte': {}},\n", + " 'granulocyte monocyte progenitor cell': {'CD34-positive, CD38-positive granulocyte monocyte progenitor': {},\n", + " 'Kit-positive granulocyte monocyte progenitor': {}},\n", + " 'promonocyte': {},\n", + " 'eosinophil progenitor cell': {'Kit-low, CD34-positive eosinophil progenitor cell': {},\n", + " 'CD34-positive, CD38-positive eosinophil progenitor cell': {}},\n", + " 'basophil progenitor cell': {'Fc-epsilon RIalpha-high basophil progenitor cell': {}},\n", + " 'nucleated thrombocyte': {},\n", + " 'erythroid lineage cell': {'erythroid progenitor cell': {'erythroid progenitor cell, mammalian': {'Kit-positive erythroid progenitor cell': {},\n", + " 'CD34-positive, GlyA-negative erythroid progenitor cell': {}}},\n", + " 'erythrocyte': {'nucleate erythrocyte': {},\n", + " 'enucleate erythrocyte': {'GlyA-positive erythrocyte': {},\n", + " 'Ly-76 high positive erythrocyte': {},\n", + " 'echinocyte': {},\n", + " 'fetal derived definitive erythrocyte': {}}},\n", + " 'proerythroblast': {'CD34-negative, GlyA-negative proerythroblast': {},\n", + " 'Kit-low proerythroblast': {}},\n", + " 'reticulocyte': {'nucleated reticulocyte': {},\n", + " 'enucleated reticulocyte': {'Ly-76 high reticulocyte': {},\n", + " 'GlyA-positive reticulocytes': {}}},\n", + " 'erythroblast': {'basophilic erythroblast': {'GlyA-positive basophilic erythroblast': {},\n", + " 'Kit-negative, Ly-76 high basophilic erythroblast': {}},\n", + " 'polychromatophilic erythroblast': {'Kit-negative, Ly-76 high polychromatophilic erythroblast': {},\n", + " 'CD71-low, GlyA-positive polychromatic erythroblast': {}},\n", + " 'orthochromatic erythroblast': {'Kit-negative, Ly-76 high orthochromatophilic erythroblasts': {},\n", + " 'CD71-negative, GlyA-positive orthochromatic erythroblast': {}}},\n", + " 'primitive erythroid lineage cell': {'primitive red blood cell': {},\n", + " 'primitive reticulocyte': {},\n", + " 'pyrenocyte': {},\n", + " 'primitive erythroid progenitor': {}}},\n", + " 'myeloid leukocyte': {'osteoclast': {'odontoclast': {'multinuclear odontoclast': {},\n", + " 'mononuclear odontoclast': {}},\n", + " 'mononuclear osteoclast': {'mononuclear odontoclast': {}},\n", + " 'multinuclear osteoclast': {'multinuclear odontoclast': {}}},\n", + " 'granulocyte': {'basophil': {'mature basophil': {},\n", + " 'immature basophil': {'basophilic myelocyte': {},\n", + " 'basophilic metamyelocyte': {},\n", + " 'band form basophil': {}}},\n", + " 'eosinophil': {'mature eosinophil': {},\n", + " 'immature eosinophil': {'eosinophilic myelocyte': {},\n", + " 'eosinophilic metamyelocyte': {},\n", + " 'band form eosinophil': {'lung parenchyma resident eosinophil': {}}}},\n", + " 'neutrophil': {'mature neutrophil': {'band form neutrophil': {},\n", + " 'segmented neutrophil of bone marrow': {}},\n", + " 'immature neutrophil': {'neutrophilic myelocyte': {},\n", + " 'neutrophilic metamyelocyte': {}}}},\n", + " 'mast cell': {'connective tissue type mast cell': {},\n", + " 'mucosal type mast cell': {}},\n", + " 'macrophage': {'elicited macrophage': {'suppressor macrophage': {'kidney interstitial suppressor macrophage': {}},\n", + " 'inflammatory macrophage': {'kidney interstitial inflammatory macrophage': {}},\n", + " 'alternatively activated macrophage': {'kidney interstitial alternatively activated macrophage': {}}},\n", + " 'tissue-resident macrophage': {'Kupffer cell': {},\n", + " 'peritoneal macrophage': {},\n", + " 'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'mesangial phagocyte': {},\n", + " 'thymic macrophage': {'thymic medullary macrophage': {},\n", + " 'thymic cortical macrophage': {}},\n", + " 'secondary lymphoid organ macrophage': {'lymph node macrophage': {'lymph node subcapsular sinus macrophage': {},\n", + " 'lymph node tingible body macrophage': {}},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}},\n", + " 'mucosa-associated lymphoid tissue macrophage': {'gut-associated lymphoid tissue macrophage': {'gastrointestinal tract (lamina propria) macrophage': {'gastrointestinal tract (lamina propria) macrophage of small intestine': {},\n", + " 'gastrointestinal tract (lamina propria) macrophage of large intestine': {}},\n", + " 'tonsillar macrophage': {},\n", + " \"Peyer's patch macrophage\": {}},\n", + " 'nasal and broncial associated lymphoid tissue macrophage': {}}},\n", + " 'central nervous system macrophage': {'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'meningeal macrophage': {},\n", + " 'choroid-plexus macrophage': {},\n", + " 'perivascular macrophage': {}},\n", + " 'melanophage': {},\n", + " 'pleural macrophage': {},\n", + " 'bone marrow macrophage': {},\n", + " 'adipose macrophage': {'F4/80-negative adipose macrophage': {},\n", + " 'F4/80-positive adipose macrophage': {}},\n", + " 'kidney resident macrophage': {},\n", + " 'lung interstitial macrophage': {}},\n", + " 'epithelioid macrophage': {},\n", + " 'appendix macrophage': {},\n", + " 'colon macrophage': {},\n", + " 'macrophage of medullary sinus of lymph node': {},\n", + " 'anorectum macrophage': {},\n", + " 'lung macrophage': {'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'lung interstitial macrophage': {}},\n", + " 'Hofbauer cell': {}},\n", + " 'Langerhans cell': {'CD1a-positive Langerhans cell': {'immature CD1a-positive Langerhans cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {}},\n", + " 'CD8_alpha-low Langerhans cell': {'immature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {}},\n", + " 'epidermal Langerhans cell': {}},\n", + " 'monocyte': {'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'non-classical monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}},\n", + " 'CD14-low, CD16-positive monocyte': {}},\n", + " 'CD115-positive monocyte': {'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}},\n", + " 'CD14-positive monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'CD14-low, CD16-positive monocyte': {},\n", + " 'CD14-positive, CD16-positive monocyte': {'CD14-positive, CD16-low monocyte': {}}},\n", + " 'intermediate monocyte': {'CD14-positive, CD16-low monocyte': {},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}}},\n", + " 'multinucleated giant cell': {},\n", + " 'myeloid dendritic cell': {'myeloid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {},\n", + " 'CD1c-positive myeloid dendritic cell': {},\n", + " 'CD16-positive myeloid dendritic cell': {'immature CD16-positive myeloid dendritic cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'monocyte-derived dendritic cell': {}},\n", + " 'immature conventional dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'immature interstitial dendritic cell': {},\n", + " 'immature CD1a-positive Langerhans cell': {},\n", + " 'immature CD8_alpha-low Langerhans cell': {},\n", + " 'immature CD16-positive myeloid dendritic cell': {}},\n", + " 'mature conventional dendritic cell': {'mature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'myeloid suppressor cell': {'Gr1-high myeloid suppressor cell': {},\n", + " 'Gr1-low myeloid suppressor cell': {}},\n", + " 'immature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-negative CD11b-negative dendritic cell': {'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-negative dendritic cell': {}},\n", + " 'CD4-positive CD11b-positive dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {}},\n", + " 'CD8_alpha-positive CD11b-negative dendritic cell': {'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {}},\n", + " 'CD103-positive dendritic cell': {'langerin-positive dermal dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {}},\n", + " 'adipose dendritic cell': {'SIRPa-positive adipose dendritic cell': {},\n", + " 'SIRPa-negative adipose dendritic cell': {}}},\n", + " 'thromboblast': {},\n", + " 'mast cell progenitor': {'Fc-epsilon RIalpha-low mast cell progenitor': {}},\n", + " 'neutrophil progenitor cell': {'neutrophilic myeloblast': {},\n", + " 'neutrophilic promyelocyte': {}},\n", + " 'myeloblast': {'neutrophilic myeloblast': {},\n", + " 'basophilic myeloblast': {},\n", + " 'eosinophilic myeloblast': {}},\n", + " 'promyelocyte': {'neutrophilic promyelocyte': {},\n", + " 'basophilic promyelocyte': {},\n", + " 'eosinophilic promyelocyte': {},\n", + " 'late promyelocyte': {},\n", + " 'early promyelocyte': {}},\n", + " 'common dendritic progenitor': {},\n", + " 'macrophage dendritic cell progenitor': {'Kit-positive macrophage dendritic cell progenitor': {}},\n", + " 'pre-conventional dendritic cell': {},\n", + " 'basophil mast progenitor cell': {'Kit-positive, integrin beta7-high basophil mast progenitor cell': {}},\n", + " 'metamyelocyte': {'neutrophilic metamyelocyte': {},\n", + " 'basophilic metamyelocyte': {},\n", + " 'eosinophilic metamyelocyte': {}},\n", + " 'myelocyte': {'neutrophilic myelocyte': {},\n", + " 'eosinophilic myelocyte': {}}},\n", + " 'hematopoietic precursor cell': {'hematopoietic stem cell': {'Kit and Sca1-positive hematopoietic stem cell': {'short term hematopoietic stem cell': {},\n", + " 'long term hematopoietic stem cell': {}},\n", + " 'CD34-positive, CD38-negative hematopoietic stem cell': {},\n", + " 'peripheral blood stem cell': {'cord blood hematopoietic stem cell': {}},\n", + " 'gestational hematopoietic stem cell': {'fetal liver hematopoietic progenitor cell': {},\n", + " 'yolk sac hematopoietic stem cell': {},\n", + " 'placental hematopoietic stem cell': {},\n", + " 'AGM hematopoietic stem cell': {},\n", + " 'cord blood hematopoietic stem cell': {}}},\n", + " 'prohemocyte (sensu Nematoda and Protostomia)': {'procrystal cell': {}},\n", + " 'hematopoietic multipotent progenitor cell': {'early lymphoid progenitor': {},\n", + " 'Slamf1-negative multipotent progenitor cell': {},\n", + " 'Slamf1-positive multipotent progenitor cell': {},\n", + " 'CD34-positive, CD38-negative multipotent progenitor cell': {}},\n", + " 'hematopoietic lineage restricted progenitor cell': {'lymphoid lineage restricted progenitor cell': {'pro-NK cell': {},\n", + " 'pro-B cell': {'fraction A pre-pro B cell': {},\n", + " 'early pro-B cell': {}},\n", + " 'pro-T cell': {'DN1 thymic pro-T cell': {},\n", + " 'early T lineage precursor': {}}},\n", + " 'myeloid lineage restricted progenitor cell': {'erythroid progenitor cell': {'erythroid progenitor cell, mammalian': {'Kit-positive erythroid progenitor cell': {},\n", + " 'CD34-positive, GlyA-negative erythroid progenitor cell': {}}},\n", + " 'megakaryocyte progenitor cell': {'CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell': {},\n", + " 'Kit-positive megakaryocyte progenitor cell': {},\n", + " 'CD34-positive, CD41-positive, CD42-negative megakaryocyte progenitor cell': {}},\n", + " 'thromboblast': {},\n", + " 'mast cell progenitor': {'Fc-epsilon RIalpha-low mast cell progenitor': {}},\n", + " 'CD115-positive monocyte': {'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}},\n", + " 'granulocytopoietic cell': {'eosinophil progenitor cell': {'Kit-low, CD34-positive eosinophil progenitor cell': {},\n", + " 'CD34-positive, CD38-positive eosinophil progenitor cell': {}},\n", + " 'basophil progenitor cell': {'Fc-epsilon RIalpha-high basophil progenitor cell': {}},\n", + " 'neutrophil progenitor cell': {'neutrophilic myeloblast': {},\n", + " 'neutrophilic promyelocyte': {}},\n", + " 'myeloblast': {'neutrophilic myeloblast': {},\n", + " 'basophilic myeloblast': {},\n", + " 'eosinophilic myeloblast': {}},\n", + " 'promyelocyte': {'neutrophilic promyelocyte': {},\n", + " 'basophilic promyelocyte': {},\n", + " 'eosinophilic promyelocyte': {},\n", + " 'late promyelocyte': {},\n", + " 'early promyelocyte': {}},\n", + " 'basophil mast progenitor cell': {'Kit-positive, integrin beta7-high basophil mast progenitor cell': {}},\n", + " 'metamyelocyte': {'neutrophilic metamyelocyte': {},\n", + " 'basophilic metamyelocyte': {},\n", + " 'eosinophilic metamyelocyte': {}},\n", + " 'myelocyte': {'neutrophilic myelocyte': {},\n", + " 'eosinophilic myelocyte': {}}},\n", + " 'monopoietic cell': {'monoblast': {}, 'promonocyte': {}}},\n", + " 'CD115-positive monocyte OR common dendritic progenitor': {'CD115-positive monocyte': {'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}},\n", + " 'common dendritic progenitor': {}},\n", + " 'pre-conventional dendritic cell': {}},\n", + " 'hematopoietic oligopotent progenitor cell': {'common myeloid progenitor': {'common myeloid progenitor, CD34-positive': {'Kit-positive, CD34-positive common myeloid progenitor': {},\n", + " 'CD34-positive, CD38-positive common myeloid progenitor': {}}},\n", + " 'megakaryocyte-erythroid progenitor cell': {'CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell': {},\n", + " 'Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell': {}},\n", + " 'common lymphoid progenitor': {'CD34-positive, CD38-positive common lymphoid progenitor': {},\n", + " 'Kit-positive, Sca1-positive common lymphoid progenitor': {},\n", + " 'CD7-negative lymphoid progenitor cell': {},\n", + " 'CD7-positive lymphoid progenitor cell': {}},\n", + " 'hematopoietic oligopotent progenitor cell, lineage-negative': {'CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor': {'CD34-positive, CD38-positive common lymphoid progenitor': {},\n", + " 'CD34-positive, CD38-positive common myeloid progenitor': {}},\n", + " 'CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor': {'granulocyte monocyte progenitor cell': {'CD34-positive, CD38-positive granulocyte monocyte progenitor': {},\n", + " 'Kit-positive granulocyte monocyte progenitor': {}},\n", + " 'CD7-negative lymphoid progenitor cell': {}},\n", + " 'CD117-positive common myeloid progenitor OR CD217-positive common lymphoid progenitor': {'Kit-positive, CD34-positive common myeloid progenitor': {},\n", + " 'Kit-positive, Sca1-positive common lymphoid progenitor': {}}},\n", + " 'macrophage dendritic cell progenitor': {'Kit-positive macrophage dendritic cell progenitor': {}}}},\n", + " 'bone marrow hematopoietic cell': {'granulocyte monocyte progenitor cell': {'CD34-positive, CD38-positive granulocyte monocyte progenitor': {},\n", + " 'Kit-positive granulocyte monocyte progenitor': {}},\n", + " 'bone marrow macrophage': {},\n", + " 'mononuclear cell of bone marrow': {},\n", + " 'segmented neutrophil of bone marrow': {}}},\n", + " 'endo-epithelial cell': {'taste receptor cell': {'type III taste bud cell': {},\n", + " 'type II taste cell': {},\n", + " 'type IV taste receptor cell': {},\n", + " 'type V taste receptor cell': {},\n", + " 'type I taste bud cell': {},\n", + " 'taste receptor cell of tongue': {}},\n", + " 'epithelial cell of uterus': {'columnar cell of endocervix': {},\n", + " 'squamous cell of ectocervix': {}},\n", + " 'internal epithelial cell of tympanic membrane': {},\n", + " 'oncocyte': {'oxyphil cell of parathyroid gland': {},\n", + " 'oxyphil cell of thyroid': {}},\n", + " 'brush cell': {'brush cell of trachebronchial tree': {'brush cell of lobular bronchiole': {},\n", + " 'brush cell of terminal bronchiole': {},\n", + " 'brush cell of trachea': {},\n", + " 'brush cell of bronchus': {'brush cell of epithelium of lobar bronchus': {}}},\n", + " 'intestinal tuft cell': {'brush cell of epithelium proper of large intestine': {'tuft cell of appendix': {},\n", + " 'tuft cell of colon': {},\n", + " 'tuft cell of anorectum': {}},\n", + " 'tuft cell of small intestine': {}}},\n", + " 'epithelial cell of prostate': {'epithelial cell of prostatic duct': {},\n", + " 'epithelial cell of prostatic acinus': {'basal cell of prostatic acinus': {},\n", + " 'luminal cell of prostatic acinus': {}},\n", + " 'luminal cell of prostate epithelium': {'luminal cell of prostatic acinus': {},\n", + " 'luminal epithelial cell of prostatic duct': {}},\n", + " 'basal cell of prostate epithelium': {'basal cell of prostatic acinus': {},\n", + " 'basal epithelial cell of prostatic duct': {},\n", + " 'prostate stem cell': {}}},\n", + " 'epithelial cell of alimentary canal': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'M cell of gut': {'microfold cell of epithelium of small intestine': {'microfold cell of epithelium of intestinal villus': {'microfold cell of epithelium proper of duodenum': {}},\n", + " 'microfold cell of epithelium proper of small intestine': {},\n", + " 'microfold cell of epithelium proper of jejunum': {},\n", + " 'microfold cell of epithelium proper of ileum': {}},\n", + " 'microfold cell of epithelium proper of large intestine': {'microfold cell of epithelium proper of anorectum': {},\n", + " 'microfold cell of epithelium proper of appendix': {}}},\n", + " 'epithelial cell of Malassez': {},\n", + " 'keratinized cell of the oral mucosa': {},\n", + " 'epithelial cell of stomach': {'foveolar cell of stomach': {},\n", + " 'glandular cell of stomach': {'peptic cell': {},\n", + " 'parietal cell': {},\n", + " 'mucous cell of stomach': {'type G enteroendocrine cell': {},\n", + " 'mucous neck cell of gastric gland': {},\n", + " 'surface mucosal cell of stomach': {},\n", + " 'stem cell of gastric gland': {},\n", + " 'gastric goblet cell': {'gastric cardiac gland goblet cell': {},\n", + " 'principal gastric gland goblet cell': {},\n", + " 'pyloric gastric gland goblet cell': {}}},\n", + " 'type A cell of stomach': {},\n", + " 'type D cell of stomach': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'stomach enteroendocrine cell': {}}},\n", + " 'epithelial cell of esophagus': {'keratinized squamous cell of esophagus': {},\n", + " 'epithelial cell of stratum corneum of esophageal epithelium': {'nonkeratinized cell of stratum corneum of esophageal epithelium': {}},\n", + " 'epithelial cell of stratum spinosum of esophageal epithelium': {},\n", + " 'glandular cell of esophagus': {'epithelial cell of esophageal gland proper': {},\n", + " 'epithelial cell of esophageal cardiac gland': {}},\n", + " 'esophagus non-keratinized squamous epithelial cell': {},\n", + " 'ciliated epithelial cell of esophagus': {}},\n", + " 'intestinal epithelial cell': {'paneth cell': {'paneth cell of the appendix': {},\n", + " 'paneth cell of colon': {},\n", + " 'paneth cell of anorectum': {},\n", + " 'paneth cell of epithelium of small intestine': {'paneth cell of epithelium proper of small intestine': {},\n", + " 'paneth cell of epithelium of crypt of Lieberkuhn of small intestine': {}}},\n", + " 'enterocyte': {'enterocyte of epithelium of large intestine': {'enterocyte of epithelium proper of large intestine': {},\n", + " 'enterocyte of colon': {}},\n", + " 'enterocyte of appendix': {},\n", + " 'enterocyte of anorectum': {},\n", + " 'vacuolated fetal-type enterocyte': {},\n", + " 'lysosome-rich enterocyte': {},\n", + " 'enterocyte of epithelium of small intestine': {'enterocyte of epithelium of intestinal villus': {},\n", + " 'enterocyte of epithelium of crypt of Lieberkuhn of small intestine': {},\n", + " 'enterocyte of epithelium proper of small intestine': {'enterocyte of epithelium proper of duodenum': {},\n", + " 'enterocyte of epithelium proper of jejunum': {},\n", + " 'enterocyte of epithelium proper of ileum': {}}},\n", + " 'enterocyte of epithelium of duodenal gland': {}},\n", + " 'intestinal crypt stem cell': {'intestinal crypt stem cell of large intestine': {'intestinal crypt stem cell of appendix': {}},\n", + " 'intestinal crypt stem cell of small intestine': {},\n", + " 'intestinal crypt stem cell of colon': {},\n", + " 'intestinal crypt stem cell of anorectum': {}},\n", + " 'epithelial cell of large intestine': {'enterocyte of epithelium of large intestine': {'enterocyte of epithelium proper of large intestine': {},\n", + " 'enterocyte of colon': {}},\n", + " 'brush cell of epithelium proper of large intestine': {'tuft cell of appendix': {},\n", + " 'tuft cell of colon': {},\n", + " 'tuft cell of anorectum': {}},\n", + " 'epithelial cell of anal column': {'nonkeratinized epithelial cell of anal column': {'nonkeratinized epithelial cell of inferior part of anal canal': {}},\n", + " 'keratinized epithelial cell of the anal canal': {},\n", + " 'epithelial cell of wall of inferior part of anal canal': {'nonkeratinized epithelial cell of inferior part of anal canal': {}}},\n", + " 'glandular cell of the large intestine': {'paneth cell of anorectum': {},\n", + " 'enteroendocrine cell of anorectum': {},\n", + " 'large intestine goblet cell': {'colon goblet cell': {},\n", + " 'anorectum goblet cell': {},\n", + " 'large intestine crypt goblet cell': {},\n", + " 'appendix goblet cell': {}},\n", + " 'appendix glandular cell': {'paneth cell of the appendix': {},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'appendix goblet cell': {}},\n", + " 'colon glandular cell': {'paneth cell of colon': {},\n", + " 'colon goblet cell': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}}},\n", + " 'rectum glandular cell': {}},\n", + " 'intestinal crypt stem cell of large intestine': {'intestinal crypt stem cell of appendix': {}},\n", + " 'enterocyte of anorectum': {},\n", + " 'intestinal crypt stem cell of anorectum': {},\n", + " 'stratified squamous epithelial cell of anal canal': {'keratinized epithelial cell of the anal canal': {}},\n", + " 'colon epithelial cell': {'mesothelial cell of colon': {},\n", + " 'tuft cell of colon': {},\n", + " 'intestinal crypt stem cell of colon': {},\n", + " 'enterocyte of colon': {},\n", + " 'colon endothelial cell': {},\n", + " 'colon glandular cell': {'paneth cell of colon': {},\n", + " 'colon goblet cell': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}}}},\n", + " 'microfold cell of epithelium proper of large intestine': {'microfold cell of epithelium proper of anorectum': {},\n", + " 'microfold cell of epithelium proper of appendix': {}},\n", + " 'epithelial cell of appendix': {'tuft cell of appendix': {},\n", + " 'enterocyte of appendix': {},\n", + " 'intestinal crypt stem cell of appendix': {},\n", + " 'mesothelial cell of appendix': {},\n", + " 'microfold cell of epithelium proper of appendix': {},\n", + " 'appendix glandular cell': {'paneth cell of the appendix': {},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'appendix goblet cell': {}}}},\n", + " 'epithelial cell of small intestine': {'intestinal crypt stem cell of small intestine': {},\n", + " 'mesothelial cell of small intestine': {},\n", + " 'vacuolated fetal-type enterocyte': {},\n", + " 'tuft cell of small intestine': {},\n", + " 'enterocyte of epithelium of small intestine': {'enterocyte of epithelium of intestinal villus': {},\n", + " 'enterocyte of epithelium of crypt of Lieberkuhn of small intestine': {},\n", + " 'enterocyte of epithelium proper of small intestine': {'enterocyte of epithelium proper of duodenum': {},\n", + " 'enterocyte of epithelium proper of jejunum': {},\n", + " 'enterocyte of epithelium proper of ileum': {}}},\n", + " 'enterocyte of epithelium of duodenal gland': {},\n", + " 'microfold cell of epithelium of small intestine': {'microfold cell of epithelium of intestinal villus': {'microfold cell of epithelium proper of duodenum': {}},\n", + " 'microfold cell of epithelium proper of small intestine': {},\n", + " 'microfold cell of epithelium proper of jejunum': {},\n", + " 'microfold cell of epithelium proper of ileum': {}},\n", + " \"endothelial cell of Peyer's patch\": {},\n", + " 'small intestine glandular cell': {'enteroendocrine cell of small intestine': {'type D cell of small intestine': {},\n", + " 'GIP cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'paneth cell of epithelium of small intestine': {'paneth cell of epithelium proper of small intestine': {},\n", + " 'paneth cell of epithelium of crypt of Lieberkuhn of small intestine': {}},\n", + " 'small intestine goblet cell': {'intestinal villus goblet cell': {'duodenal goblet cell': {},\n", + " 'jejunal goblet cell': {},\n", + " 'ileal goblet cell': {}}},\n", + " 'duodenum glandular cell': {'duodenal goblet cell': {}}}},\n", + " 'intestine goblet cell': {'large intestine goblet cell': {'colon goblet cell': {},\n", + " 'anorectum goblet cell': {},\n", + " 'large intestine crypt goblet cell': {},\n", + " 'appendix goblet cell': {}},\n", + " 'small intestine goblet cell': {'intestinal villus goblet cell': {'duodenal goblet cell': {},\n", + " 'jejunal goblet cell': {},\n", + " 'ileal goblet cell': {}}}},\n", + " 'intestinal tuft cell': {'brush cell of epithelium proper of large intestine': {'tuft cell of appendix': {},\n", + " 'tuft cell of colon': {},\n", + " 'tuft cell of anorectum': {}},\n", + " 'tuft cell of small intestine': {}},\n", + " 'intestinal enteroendocrine cell': {'PP cell of intestine': {},\n", + " 'enteroendocrine cell of small intestine': {'type D cell of small intestine': {},\n", + " 'GIP cell': {},\n", + " 'type M enteroendocrine cell': {}},\n", + " 'enteroendocrine cell of appendix': {},\n", + " 'enteroendocrine cell of colon': {'type D cell of colon': {}},\n", + " 'enteroendocrine cell of anorectum': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}}},\n", + " 'gingival epithelial cell': {},\n", + " 'nasopharyngeal epithelial cell': {},\n", + " 'oral mucosa squamous cell': {},\n", + " 'tonsil squamous cell': {},\n", + " 'salivary gland glandular cell': {'acinar cell of salivary gland': {}},\n", + " 'taste receptor cell of tongue': {}},\n", + " 'epithelial cell of thyroid gland': {'oxyphil cell of thyroid': {},\n", + " 'thyroid follicular cell': {}},\n", + " 'epithelial cell of parathyroid gland': {'chief cell of parathyroid gland': {'active chief cell of parathyroid gland': {},\n", + " 'dark chief cell of parathyroid gland': {},\n", + " 'clear chief cell of parathyroid gland': {},\n", + " 'inactive chief cell of parathyoid gland': {},\n", + " 'light chief cell of parathyroid gland': {}},\n", + " 'oxyphil cell of parathyroid gland': {},\n", + " 'transitional cell of parathyroid gland': {}},\n", + " 'endothelial cell of viscerocranial mucosa': {'buccal mucosa cell': {'keratinized cell of the oral mucosa': {}},\n", + " 'endo-epithelial cell of tympanic part of viscerocranial mucosa': {},\n", + " 'endo-epithelial cell of pharyngotympanic part of viscerocranial mucosa': {}},\n", + " 'epithelial cell of thymus': {'cortical thymic epithelial cell': {'type-1 epithelial cell of thymus': {},\n", + " 'type-4 epithelial cell of thymus': {},\n", + " 'type-3 epithelial cell of thymus': {},\n", + " 'type-2 epithelial cell of thymus': {},\n", + " 'subcapsular thymic epithelial cell': {}},\n", + " 'medullary thymic epithelial cell': {'type-6 epithelial cell of thymus': {},\n", + " 'type-4 epithelial cell of thymus': {},\n", + " 'type-5 epithelial cell of thymus': {},\n", + " 'type-7 epithelial cell of thymus': {},\n", + " 'medullary thymic epithelial cell type 1': {},\n", + " 'medullary thymic epithelial cell type 2': {},\n", + " 'medullary thymic epithelial cell type 3': {},\n", + " 'medullary thymic epithelial cell type 4': {},\n", + " 'myo-medullary thymic epithelial cell': {},\n", + " 'neuro-medullary thymic epithelial cell': {}},\n", + " 'corticomedullary thymic epithelial cell': {},\n", + " 'thymic nurse cell': {}},\n", + " 'respiratory epithelial cell': {'epithelial cell of upper respiratory tract': {'nasopharyngeal epithelial cell': {}},\n", + " 'epithelial cell of lower respiratory tract': {'epithelial cell of tracheobronchial tree': {'club cell': {},\n", + " 'tracheal epithelial cell': {'brush cell of trachea': {},\n", + " 'tracheal goblet cell': {},\n", + " 'basal cell of epithelium of trachea': {},\n", + " 'dense-core granulated cell of epithelium of trachea': {},\n", + " 'mucus secreting cell of trachea gland': {},\n", + " 'myoepithelial cell of trachea gland': {}},\n", + " 'brush cell of trachebronchial tree': {'brush cell of lobular bronchiole': {},\n", + " 'brush cell of terminal bronchiole': {},\n", + " 'brush cell of trachea': {},\n", + " 'brush cell of bronchus': {'brush cell of epithelium of lobar bronchus': {}}},\n", + " 'ciliated columnar cell of tracheobronchial tree': {'ciliated cell of the bronchus': {}},\n", + " 'intermediate epitheliocyte': {},\n", + " 'bronchial epithelial cell': {'brush cell of bronchus': {'brush cell of epithelium of lobar bronchus': {}},\n", + " 'undifferentiated cell of bronchus epithelium': {},\n", + " 'ciliated cell of the bronchus': {},\n", + " 'bronchial goblet cell': {'goblet cell of epithelium of lobar bronchus': {}},\n", + " 'basal cell of epithelium of bronchus': {},\n", + " 'myoepithelial cell of bronchus submucosal gland': {},\n", + " 'neuroendocrine cell of epithelium of lobar bronchus': {},\n", + " 'mucus secreting cell of bronchus submucosal gland': {}},\n", + " 'basal epithelial cell of tracheobronchial tree': {'basal cell of epithelium of bronchus': {}},\n", + " 'tracheobronchial goblet cell': {'bronchial goblet cell': {'goblet cell of epithelium of lobar bronchus': {}},\n", + " 'tracheal goblet cell': {}},\n", + " 'basal cell of epithelium of terminal bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of respiratory bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of lobular bronchiole': {},\n", + " 'mucus secreting cell of tracheobronchial tree submucosal gland': {'mucus secreting cell of trachea gland': {},\n", + " 'mucus secreting cell of bronchus submucosal gland': {}}}},\n", + " 'respiratory basal cell': {'basal cell of epithelium of trachea': {},\n", + " 'basal cell of epithelium of bronchus': {},\n", + " 'basal cell of epithelium of terminal bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of respiratory bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of lobular bronchiole': {}},\n", + " 'respiratory hillock cell': {},\n", + " 'deuterosomal cell': {},\n", + " 'respiratory suprabasal cell': {}}},\n", + " 'ecto-epithelial cell': {'ameloblast': {},\n", + " 'keratinizing barrier epithelial cell': {'keratinocyte': {'Merkel cell': {},\n", + " 'prickle cell': {},\n", + " 'basal cell of epidermis': {'limb basal cell of epidermis': {}},\n", + " 'granular cell of epidermis': {},\n", + " 'squamous cell of epidermis': {},\n", + " 'keratinocyte stem cell': {},\n", + " 'foreskin keratinocyte': {},\n", + " 'hair follicular keratinocyte': {'keratinized cell of hair follicle': {}},\n", + " 'suprabasal keratinocyte': {}},\n", + " 'keratinized cell of the oral mucosa': {},\n", + " 'keratinized squamous cell of esophagus': {},\n", + " 'keratinized epithelial cell of the anal canal': {}},\n", + " 'neurecto-epithelial cell': {'odontoblast': {'non-terminally differentiated odontoblast': {},\n", + " 'terminally differentiated odontoblast': {}},\n", + " 'ependymal cell': {'choroid plexus epithelial cell': {}},\n", + " 'corneal endothelial cell': {},\n", + " 'neuroendocrine cell': {'amine precursor uptake and decarboxylation cell': {'chromaffin cell': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'interrenal chromaffin cell': {'interrenal norepinephrine type cell': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'chromaffin cell of paraganglion': {'chromaffin cell of paraaortic body': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}}},\n", + " 'paraganglial type 1 cell': {},\n", + " 'Feyrter cell': {'dense-core granulated cell of epithelium of trachea': {}},\n", + " 'magnocellular neurosecretory cell': {'oxytocin-secreting magnocellular cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'gonadotropin-releasing hormone neuron': {},\n", + " 'prostate neuroendocrine cell': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'parvocellular neurosecretory cell': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'Merkel cell': {},\n", + " 'epidermal cell (sensu Arthropoda)': {'tormogen cell': {},\n", + " 'trichogen cell': {}},\n", + " 'epidermoblast': {},\n", + " 'pigmented epithelial cell': {'pigmented ciliary epithelial cell': {}},\n", + " 'parafollicular cell': {},\n", + " 'pinealocyte': {'type I pinealocyte': {}, 'type II pinealocyte': {}},\n", + " 'cerebrospinal fluid secreting cell': {},\n", + " 'interstitial cell of Cajal': {},\n", + " 'olfactory epithelial cell': {'basal cell of olfactory epithelium': {'olfactory epithelial supporting cell': {},\n", + " 'globose cell of olfactory epithelium': {},\n", + " 'basal proper cell of olfactory epithelium': {}}},\n", + " 'folliculostellate cell of pars distalis of adenohypophysis': {},\n", + " 'interstitial cell of pineal gland': {},\n", + " 'supporting cell of carotid body': {'type II cell of carotid body': {}},\n", + " 'type I cell of carotid body': {},\n", + " 'non-pigmented ciliary epithelial cell': {},\n", + " 'meningothelial cell': {},\n", + " 'strial intermediate cell': {},\n", + " 'auditory epithelial supporting cell': {'supporting cell of cochlea': {'Claudius cell': {},\n", + " 'Boettcher cell': {},\n", + " 'border cell of cochlea': {},\n", + " 'interdental cell of cochlea': {},\n", + " 'organ of Corti supporting cell': {'Hensen cell': {},\n", + " 'phalangeal cell': {\"Deiter's cell\": {},\n", + " 'inner phalangeal cell': {}},\n", + " 'pillar cell': {'internal pillar cell of cochlea': {},\n", + " 'external pillar cell of cochlea': {}}}},\n", + " 'supporting cell of vestibular epithelium': {'external supporting cell of vestibular epithelium': {},\n", + " 'external limiting cell of vestibular epithelium': {}}},\n", + " 'hypendymal cell': {}},\n", + " 'general ecto-epithelial cell': {'epidermal cell': {'keratinocyte': {'Merkel cell': {},\n", + " 'prickle cell': {},\n", + " 'basal cell of epidermis': {'limb basal cell of epidermis': {}},\n", + " 'granular cell of epidermis': {},\n", + " 'squamous cell of epidermis': {},\n", + " 'keratinocyte stem cell': {},\n", + " 'foreskin keratinocyte': {},\n", + " 'hair follicular keratinocyte': {'keratinized cell of hair follicle': {}},\n", + " 'suprabasal keratinocyte': {}},\n", + " 'epidermal cell (sensu Arthropoda)': {'tormogen cell': {},\n", + " 'trichogen cell': {}},\n", + " 'stratum granulosum cell': {},\n", + " 'nonkeratinized cell of epidermis': {},\n", + " 'inner root sheath cell': {},\n", + " 'outer root sheath cell': {},\n", + " 'hair germinal matrix cell': {},\n", + " 'epithelial cell of sweat gland': {'acinar cell of sebaceous gland': {},\n", + " 'dark cell of eccrine sweat gland': {},\n", + " 'clear cell of eccrine sweat gland': {},\n", + " 'myoepithelial cell of sweat gland': {}}},\n", + " 'corneal epithelial cell': {},\n", + " 'dental pulp cell': {'odontoblast': {'non-terminally differentiated odontoblast': {},\n", + " 'terminally differentiated odontoblast': {}},\n", + " 'dental pulp stem cell': {}},\n", + " 'external epithelial cell of tympanic membrane': {'basal external epithelial cell of tympanic membrane': {},\n", + " 'superficial external epithelial cell of tympanic membrane': {}},\n", + " 'epithelial cell of Malassez': {},\n", + " 'ecto-epithelial cell of viscerocranial mucosa': {},\n", + " 'epithelial cell of skin gland': {'epithelial cell of sweat gland': {'acinar cell of sebaceous gland': {},\n", + " 'dark cell of eccrine sweat gland': {},\n", + " 'clear cell of eccrine sweat gland': {},\n", + " 'myoepithelial cell of sweat gland': {}}},\n", + " 'endocrine-paracrine cell of prostate gland': {},\n", + " 'mammary alveolar cell': {}}},\n", + " 'meso-epithelial cell': {'non-branched duct epithelial cell': {'epithelial cell of prostatic duct': {},\n", + " 'epithelial cell of lacrimal duct': {'epithelial cell of nasolacrimal duct': {}},\n", + " 'kidney collecting duct epithelial cell': {'kidney collecting duct principal cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney papillary duct principal cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}}}},\n", + " 'mesothelial cell': {'littoral cell of liver': {},\n", + " 'seminiferous tubule epithelial cell': {'Sertoli cell': {},\n", + " 'peritubular myoid cell': {}},\n", + " 'mesothelial cell of small intestine': {},\n", + " 'mesothelial cell of colon': {},\n", + " 'mesothelial cell of appendix': {},\n", + " 'mesothelial cell of epicardium': {},\n", + " 'mesothelial cell of dura mater': {},\n", + " 'mesothelial cell of anterior chamber of eye': {},\n", + " 'mesothelial cell of peritoneum': {'mesothelial cell of parietal peritoneum': {},\n", + " 'mesothelial cell of visceral peritoneum': {}},\n", + " 'mesothelial cell of pleura': {'mesothelial cell of parietal pleura': {},\n", + " 'mesothelial cell of visceral pleura': {}}},\n", + " 'endothelial cell': {'gut endothelial cell': {},\n", + " 'corneal endothelial cell': {},\n", + " 'endothelial cell of vascular tree': {'blood vessel endothelial cell': {'endothelial tip cell': {},\n", + " 'vein endothelial cell': {'endothelial cell of umbilical vein': {},\n", + " 'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}},\n", + " 'arcuate vein endothelial cell': {},\n", + " 'interlobulary vein endothelial cell': {},\n", + " 'hindlimb stylopod vein endothelial cell': {},\n", + " 'vein endothelial cell of respiratory system': {}},\n", + " 'retinal blood vessel endothelial cell': {},\n", + " 'endothelial stalk cell': {},\n", + " 'cardiac blood vessel endothelial cell': {'endothelial cell of coronary artery': {}},\n", + " 'endothelial cell of arteriole': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole endothelial cell': {},\n", + " 'endothelial cell of arteriole of lymph node': {}},\n", + " 'endothelial cell of artery': {'aortic endothelial cell': {'thoracic aorta endothelial cell': {}},\n", + " 'arcuate artery endothelial cell': {},\n", + " 'interlobulary artery endothelial cell': {'kidney afferent arteriole endothelial cell': {}},\n", + " 'pulmonary artery endothelial cell': {},\n", + " 'endothelial cell of coronary artery': {},\n", + " 'umbilical artery endothelial cell': {}},\n", + " 'kidney capillary endothelial cell': {'glomerular capillary endothelial cell': {},\n", + " 'peritubular capillary endothelial cell': {'kidney outer medulla peritubular capillary cell': {},\n", + " 'kidney cortex peritubular capillary cell': {}},\n", + " 'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}}},\n", + " 'microvascular endothelial cell': {'capillary endothelial cell': {'glomerular capillary endothelial cell': {},\n", + " 'placental villus capillary endothelial cell': {},\n", + " 'pulmonary capillary endothelial cell': {'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}}},\n", + " 'dermal microvascular endothelial cell': {},\n", + " 'lung microvascular endothelial cell': {'pulmonary capillary endothelial cell': {'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}}},\n", + " 'bladder microvascular endothelial cell': {},\n", + " 'brain microvascular endothelial cell': {},\n", + " 'prostate gland microvascular endothelial cell': {},\n", + " 'ovarian microvascular endothelial cell': {},\n", + " 'mammary microvascular endothelial cell': {},\n", + " 'adipose microvascular endothelial cell': {},\n", + " 'endometrial microvascular endothelial cell': {}},\n", + " 'dermis blood vessel endothelial cell': {'dermal microvascular endothelial cell': {}}},\n", + " 'endothelial cell of lymphatic vessel': {'lymphatic endothelial cell of subcapsular sinus ceiling': {},\n", + " 'lymphatic endothelial cell of subcapsular sinus floor': {},\n", + " 'lymphatic endothelial cell of trabecula': {},\n", + " 'lymphatic endothelial cell of medulla ceiling': {},\n", + " 'dermis lymphatic vessel endothelial cell': {'dermis microvascular lymphatic vessel endothelial cell': {}}},\n", + " 'endothelial cell of venule': {'endothelial cell of high endothelial venule': {},\n", + " 'squamous endothelial cell': {}},\n", + " 'lung endothelial cell': {'lung microvascular endothelial cell': {'pulmonary capillary endothelial cell': {'alveolar capillary type 1 endothelial cell': {},\n", + " 'alveolar capillary type 2 endothelial cell': {}}}}},\n", + " 'glomerular endothelial cell': {'glomerular capillary endothelial cell': {}},\n", + " 'endothelial cell of sinusoid': {'endothelial cell of venous sinus of spleen': {'endothelial cell of venous sinus of red pulp of spleen': {}},\n", + " 'endothelial cell of hepatic sinusoid': {'endothelial cell of periportal hepatic sinusoid': {},\n", + " 'endothelial cell of pericentral hepatic sinusoid': {}}},\n", + " 'circulating endothelial cell': {},\n", + " 'trabecular meshwork cell': {},\n", + " 'endothelial cell of respiratory system lymphatic vessel': {},\n", + " 'endothelial cell of placenta': {'placental villus capillary endothelial cell': {}},\n", + " 'endothelial cell of hepatic portal vein': {},\n", + " 'endothelial cell of uterus': {'endometrial microvascular endothelial cell': {}},\n", + " 'lymph node lymphatic vessel endothelial cell': {'lymphatic endothelial cell of subcapsular sinus ceiling': {},\n", + " 'lymphatic endothelial cell of subcapsular sinus floor': {},\n", + " 'lymphatic endothelial cell of trabecula': {},\n", + " 'lymphatic endothelial cell of medulla ceiling': {}},\n", + " 'cardiac endothelial cell': {'endocardial cell': {},\n", + " 'cardiac blood vessel endothelial cell': {'endothelial cell of coronary artery': {}},\n", + " 'valve endothelial cell': {}},\n", + " \"endothelial cell of Peyer's patch\": {},\n", + " 'ureter adventitial cell': {'fibrocyte of adventitia of ureter': {}},\n", + " 'colon endothelial cell': {},\n", + " 'cerebral cortex endothelial cell': {},\n", + " 'splenic endothelial cell': {'endothelial cell of venous sinus of red pulp of spleen': {}},\n", + " 'endothelial cell of venule of lymph node': {},\n", + " 'endothelial cell of efferent lymphatic vessel': {}},\n", + " 'myoepithelial cell': {'myoepithelial cell of mammary gland': {'myoepithelial cell of lactiferous alveolus': {},\n", + " 'myoepithelial cell of lactiferous duct': {},\n", + " 'myoepithelial cell of acinus of lactiferous gland': {}},\n", + " 'peritubular myoid cell': {},\n", + " 'myoepithelial cell of intralobular lactiferous duct': {},\n", + " 'myoepithelial cell of sweat gland': {},\n", + " 'myoepithelial cell of terminal lactiferous duct': {},\n", + " 'myoepithelial cell of dilator pupillae': {},\n", + " 'myoepithelial cell of main lactiferous duct': {},\n", + " 'myoepithelial cell of primary lactiferous duct': {},\n", + " 'myoepithelial cell of secondary lactiferous duct': {},\n", + " 'myoepithelial cell of tertiary lactiferous duct': {},\n", + " 'myoepithelial cell of quarternary lactiferous duct': {},\n", + " 'myoepithelial cell of bronchus submucosal gland': {},\n", + " 'myoepithelial cell of trachea gland': {}},\n", + " 'synovial cell': {'type B synovial cell': {},\n", + " 'type A synovial cell': {}},\n", + " 'cortical cell of adrenal gland': {'type I cell of adrenal cortex': {},\n", + " 'type II cell of adrenal cortex': {},\n", + " 'type III cell of adrenal cortex': {}},\n", + " 'endosteal cell': {},\n", + " 'follicular cell of ovary': {'granulosa cell': {},\n", + " 'cumulus cell': {'corona radiata cell': {}},\n", + " 'primary follicular cell of ovary': {},\n", + " 'secondary follicular cell of ovary': {}},\n", + " 'primitive cardiac myocyte': {},\n", + " 'epithelial cell of distal tubule': {'kidney distal convoluted tubule epithelial cell': {'epithelial cell of early distal convoluted tubule': {},\n", + " 'epithelial cell of late distal convoluted tubule': {}},\n", + " 'macula densa epithelial cell': {},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}},\n", + " 'renal intercalated cell': {'renal beta-intercalated cell': {'kidney collecting duct beta-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}},\n", + " 'renal alpha-intercalated cell': {'kidney collecting duct alpha-intercalated cell': {},\n", + " 'kidney connecting tubule alpha-intercalated cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}},\n", + " 'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}},\n", + " 'vertebrate lens cell': {'lens epithelial cell': {'anterior lens cell': {}},\n", + " 'lens fiber cell': {'secondary lens fiber': {'non-nucleated secondary lens fiber': {},\n", + " 'nucleated secondary lens fiber': {}},\n", + " 'primary lens fiber': {}}},\n", + " 'neural cell': {'neural stem cell': {'neuroblast (sensu Nematoda and Protostomia)': {},\n", + " 'neuroglioblast (sensu Nematoda and Protostomia)': {'neuroglioblast (sensu Nematoda)': {}}},\n", + " 'neuron associated cell': {'neuron associated cell (sensu Vertebrata)': {'Merkel cell': {},\n", + " 'glioblast (sensu Vertebrata)': {},\n", + " 'perineuronal satellite cell': {},\n", + " 'oligodendrocyte precursor cell': {},\n", + " 'differentiation-committed oligodendrocyte precursor': {},\n", + " 'glial restricted tripotential precursor cell': {}},\n", + " 'glial cell': {'macroglial cell': {'astrocyte': {'Bergmann glial cell': {},\n", + " 'ependymoglial cell': {'tanycyte': {}},\n", + " 'astrocyte of the cerebellum': {},\n", + " 'astrocyte of the spinal cord': {},\n", + " 'immature astrocyte': {},\n", + " 'mature astrocyte': {},\n", + " 'astrocyte of the forebrain': {'pituicyte': {},\n", + " 'astrocyte of the cerebral cortex': {'hippocampal astrocyte': {}}},\n", + " 'retinal astrocyte': {}},\n", + " 'oligodendrocyte': {'spinal cord oligodendrocyte': {}},\n", + " 'brain macroglial cell': {'astrocyte of the cerebellum': {},\n", + " 'astrocyte of the forebrain': {'pituicyte': {},\n", + " 'astrocyte of the cerebral cortex': {'hippocampal astrocyte': {}}}}},\n", + " 'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'radial glial cell': {'Mueller cell': {},\n", + " 'forebrain radial glial cell': {},\n", + " 'spinal cord radial glial cell': {}},\n", + " 'Schwann cell': {'myelinating Schwann cell': {},\n", + " 'non-myelinating Schwann cell': {'terminal Schwann cell': {}},\n", + " 'immature Schwann cell': {}},\n", + " 'perineurial cell': {},\n", + " 'cardiac glial cell': {},\n", + " 'olfactory ensheathing cell': {},\n", + " 'lateral line nerve glial cell': {'posterior lateral line nerve glial cell': {},\n", + " 'anterior lateral line nerve glial cell': {}},\n", + " 'cerebral cortex glial cell': {'astrocyte of the cerebral cortex': {'hippocampal astrocyte': {}},\n", + " 'hippocampal glial cell': {'hippocampal astrocyte': {}}},\n", + " 'lateral ventricle glial cell': {},\n", + " 'myelinating glial cell': {'oligodendrocyte': {'spinal cord oligodendrocyte': {}},\n", + " 'myelinating Schwann cell': {}},\n", + " 'enteroglial cell': {}},\n", + " 'neuron associated cell (sensu Nematoda and Protostomia)': {'guidepost cell': {},\n", + " 'glioblast (sensu Nematoda and Protostomia)': {}}},\n", + " 'neuron': {'CNS neuron (sensu Nematoda and Protostomia)': {'Kenyon cell': {}},\n", + " 'neural crest derived neuron': {'chromaffin cell': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'interrenal chromaffin cell': {'interrenal norepinephrine type cell': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'chromaffin cell of paraganglion': {'chromaffin cell of paraaortic body': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}},\n", + " 'enteric neuron': {}},\n", + " 'interneuron': {'bipolar neuron': {'retinal bipolar neuron': {'ON-bipolar cell': {'rod bipolar cell': {'rod bipolar cell (sensu Mus)': {}},\n", + " 'ON-blue cone bipolar cell': {},\n", + " 'diffuse bipolar 4 cell': {},\n", + " 'diffuse bipolar 6 cell': {},\n", + " 'invaginating midget bipolar cell': {},\n", + " 'giant bipolar cell': {}},\n", + " 'OFF-bipolar cell': {'diffuse bipolar 1 cell': {},\n", + " 'diffuse bipolar 2 cell': {},\n", + " 'diffuse bipolar 3a cell': {},\n", + " 'diffuse bipolar 3b cell': {},\n", + " 'flat midget bipolar cell': {},\n", + " 'OFFx cell': {}},\n", + " 'cone retinal bipolar cell': {'type 1 cone bipolar cell (sensu Mus)': {},\n", + " 'type 2 cone bipolar cell (sensu Mus)': {},\n", + " 'type 3 cone bipolar cell (sensu Mus)': {'type 3a cone bipolar cell': {},\n", + " 'type 3b cone bipolar cell': {}},\n", + " 'type 4 cone bipolar cell (sensu Mus)': {},\n", + " 'type 5 cone bipolar cell (sensu Mus)': {'type 5a cone bipolar cell': {},\n", + " 'type 5b cone bipolar cell': {}},\n", + " 'type 6 cone bipolar cell (sensu Mus)': {},\n", + " 'type 7 cone bipolar cell (sensu Mus)': {},\n", + " 'type 8 cone bipolar cell (sensu Mus)': {},\n", + " 'type 9 cone bipolar cell (sensu Mus)': {}}},\n", + " 'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {}},\n", + " 'Mauthner neuron': {},\n", + " 'ganglion interneuron': {},\n", + " 'CNS interneuron': {'CNS short range interneuron': {},\n", + " 'CNS long range interneuron': {},\n", + " 'local interneuron': {},\n", + " 'spinal cord interneuron': {'Kolmer-Agduhr neuron': {},\n", + " 'dorsal horn interneuron': {},\n", + " 'spinal cord ventral column interneuron': {}},\n", + " 'cortical interneuron': {'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'hippocampal interneuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}}},\n", + " 'olfactory bulb interneuron': {'olfactory granule cell': {},\n", + " 'periglomerular cell': {},\n", + " 'mitral cell': {}},\n", + " 'cerebellum basket cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'unipolar brush cell': {}},\n", + " 'inhibitory interneuron': {'GABAergic interneuron': {'basket cell': {'cerebellum basket cell': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'Kolmer-Agduhr neuron': {},\n", + " 'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'GABAnergic interplexiform cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'Martinotti neuron': {'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'T Martinotti neuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'fan Martinotti neuron': {'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {}}},\n", + " 'GABAergic amacrine cell': {}}},\n", + " 'primary interneuron (sensu Teleostei)': {},\n", + " 'amacrine cell': {'flag amacrine cell': {'flag A amacrine cell': {},\n", + " 'flag B amacrine cell': {}},\n", + " 'AB diffuse-1 amacrine cell': {},\n", + " 'AB diffuse-2 amacrine cell': {},\n", + " 'spider amacrine cell': {},\n", + " 'monostratified amacrine cell': {},\n", + " 'broad diffuse amacrine cell': {},\n", + " 'recurving diffuse amacrine cell': {},\n", + " 'starburst amacrine cell': {},\n", + " 'diffuse multistratified amacrine cell': {},\n", + " 'AB broad diffuse-1 amacrine cell': {},\n", + " 'AB broad diffuse-2 amacrine cell': {},\n", + " 'fountain amacrine cell': {},\n", + " 'WF1 amacrine cell': {},\n", + " 'WF2 amacrine cell': {},\n", + " 'WF3-1 amacrine cell': {},\n", + " 'WF3-2 amacrine cell': {},\n", + " 'WF4 amacrine cell': {},\n", + " 'indoleamine-accumulating amacrine cell': {},\n", + " 'bistratified retinal amacrine cell': {'A2 amacrine cell': {},\n", + " 'flat bistratified amacrine cell': {},\n", + " 'A2-like amacrine cell': {},\n", + " 'diffuse bistratified amacrine cell': {},\n", + " 'DAPI-3 amacrine cell': {},\n", + " 'asymmetric bistratified amacrine cell': {},\n", + " 'wavy bistratified amacrine cell': {}},\n", + " 'narrow field retinal amacrine cell': {},\n", + " 'medium field retinal amacrine cell': {},\n", + " 'wide field retinal amacrine cell': {},\n", + " 'displaced amacrine cell': {},\n", + " 'GABAergic amacrine cell': {},\n", + " 'glycinergic amacrine cell': {}},\n", + " 'stellate interneuron': {},\n", + " 'neurogliaform cell': {'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'retina horizontal cell': {'H1 horizontal cell': {},\n", + " 'H2 horizontal cell': {}},\n", + " 'interplexiform cell': {'dopamanergic interplexiform cell': {},\n", + " 'GABAnergic interplexiform cell': {}},\n", + " 'medial ganglionic eminence derived interneuron': {'medial ganglionic eminence derived GABAergic cortical interneuron': {}},\n", + " 'caudal ganglionic eminence derived interneuron': {'caudal ganglionic eminence derived GABAergic cortical interneuron': {}},\n", + " 'bitufted neuron': {},\n", + " 'chandelier cell': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'double bouquet cell': {}},\n", + " 'polymodal neuron': {},\n", + " 'multipolar neuron': {'basket cell': {'cerebellum basket cell': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'stellate neuron': {'cerebellar stellate cell': {},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {}},\n", + " 'pyramidal neuron': {'horizontal pyramidal neuron': {},\n", + " 'inverted pyramidal neuron': {},\n", + " 'stellate pyramidal neuron': {},\n", + " 'tufted pyramidal neuron': {},\n", + " 'untufted pyramidal neuron': {},\n", + " 'amygdala pyramidal neuron': {},\n", + " 'cerebral cortex pyramidal neuron': {'hippocampal pyramidal neuron': {},\n", + " 'primary motor cortex pyramidal cell': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'Meynert cell': {},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}},\n", + " 'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}}}},\n", + " 'stellate interneuron': {},\n", + " 'neurogliaform cell': {'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'Martinotti neuron': {'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'T Martinotti neuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'fan Martinotti neuron': {'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {}}}},\n", + " 'pseudounipolar neuron': {},\n", + " 'unipolar neuron': {},\n", + " 'cholinergic neuron': {'somatomotor neuron': {'cranial somatomotor neuron': {},\n", + " 'lower motor neuron': {'spinal accessory motor neuron': {},\n", + " 'gamma motor neuron': {'dynamic gamma motor neuron': {},\n", + " 'static gamma motor neuron': {}},\n", + " 'alpha motor neuron': {},\n", + " 'anterior horn motor neuron': {},\n", + " 'beta motor neuron': {'static beta motor neuron': {},\n", + " 'dynamic beta motor neuron': {}}}},\n", + " 'sympathetic cholinergic neuron': {}},\n", + " 'peptidergic neuron': {},\n", + " 'columnar neuron': {},\n", + " 'pioneer neuron': {},\n", + " 'CNS neuron (sensu Vertebrata)': {'granule cell': {'olfactory granule cell': {},\n", + " 'cerebellar granule cell': {},\n", + " 'cortical granule cell': {'hippocampal granule cell': {'dentate gyrus granule cell': {}}},\n", + " 'Island of Calleja granule cell': {}},\n", + " 'Purkinje cell': {},\n", + " 'stellate neuron': {'cerebellar stellate cell': {},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {}},\n", + " 'neuronal brush cell': {},\n", + " 'Cajal-Retzius cell': {},\n", + " 'retinal ganglion cell': {'bistratified retinal ganglion cell': {'G3 retinal ganglion cell': {},\n", + " 'G7 retinal ganglion cell': {},\n", + " 'retinal ganglion cell D1': {},\n", + " 'retinal ganglion cell D2': {},\n", + " 'M11 retinal ganglion cell': {},\n", + " 'M12 retinal ganglion cell': {},\n", + " 'M13 retinal ganglion cell': {},\n", + " 'M14 retinal ganglion cell': {},\n", + " 'small bistratified retinal ganglion cell': {}},\n", + " 'G1 retinal ganglion cell': {},\n", + " 'G2 retinal ganglion cell': {},\n", + " 'G4 retinal ganglion cell': {'G4-ON retinal ganglion cell': {},\n", + " 'G4-OFF retinal ganglion cell': {}},\n", + " 'G5 retinal ganglion cell': {},\n", + " 'G6 retinal ganglion cell': {},\n", + " 'G8 retinal ganglion cell': {},\n", + " 'G9 retinal ganglion cell': {},\n", + " 'G10 retinal ganglion cell': {},\n", + " 'G11 retinal ganglion cell': {'G11-ON retinal ganglion cell': {},\n", + " 'G11-OFF retinal ganglion cell': {}},\n", + " 'M1 retinal ganglion cell': {},\n", + " 'M2 retinal ganglion cell': {},\n", + " 'M3 retinal ganglion cell': {'M3-ON retinal ganglion cell': {},\n", + " 'M3-OFF retinal ganglion cell': {}},\n", + " 'M4 retinal ganglion cell': {},\n", + " 'M5 retinal ganglion cell': {},\n", + " 'M6 retinal ganglion cell': {},\n", + " 'M7 retinal ganglion cell': {'M7-ON retinal ganglion cell': {},\n", + " 'M7-OFF retinal ganglion cell': {}},\n", + " 'M8 retinal ganglion cell': {},\n", + " 'M9 retinal ganglion cell': {'M9-ON retinal ganglion cell': {},\n", + " 'M9-OFF retinal ganglion cell': {}},\n", + " 'M10 retinal ganglion cell': {},\n", + " 'retinal ganglion cell B': {'retinal ganglion cell B1': {},\n", + " 'retinal ganglion cell B2': {},\n", + " 'retinal ganglion cell B3': {'retinal ganglion cell B3 outer': {},\n", + " 'retinal ganglion cell B3 inner': {}}},\n", + " 'retinal ganglion cell C': {'retinal ganglion cell C outer': {'retinal ganglion cell C4': {},\n", + " 'retinal ganglion cell C5': {},\n", + " 'retinal ganglion cell C6': {},\n", + " 'retinal ganglion cell C2 outer': {}},\n", + " 'retinal ganglion cell C inner': {'retinal ganglion cell C3': {},\n", + " 'retinal ganglion cell C1': {},\n", + " 'retinal ganglion cell C2 inner': {}}},\n", + " 'retinal ganglion cell A': {'retinal ganglion cell A1': {},\n", + " 'retinal ganglion cell A2': {'retinal ganglion cell A2 inner': {},\n", + " 'retinal ganglion cell A2 outer': {}}},\n", + " 'ON retinal ganglion cell': {'G4-ON retinal ganglion cell': {},\n", + " 'G11-ON retinal ganglion cell': {},\n", + " 'M3-ON retinal ganglion cell': {},\n", + " 'M7-ON retinal ganglion cell': {},\n", + " 'M9-ON retinal ganglion cell': {},\n", + " 'ON midget ganglion cell': {},\n", + " 'ON parasol ganglion cell': {}},\n", + " 'OFF retinal ganglion cell': {'G4-OFF retinal ganglion cell': {},\n", + " 'G11-OFF retinal ganglion cell': {},\n", + " 'M3-OFF retinal ganglion cell': {},\n", + " 'M7-OFF retinal ganglion cell': {},\n", + " 'M9-OFF retinal ganglion cell': {},\n", + " 'OFF midget ganglion cell': {},\n", + " 'OFF parasol ganglion cell': {}},\n", + " 'midget ganglion cell of retina': {'ON midget ganglion cell': {},\n", + " 'OFF midget ganglion cell': {}},\n", + " 'parasol ganglion cell of retina': {'OFF parasol ganglion cell': {},\n", + " 'ON parasol ganglion cell': {}}},\n", + " 'raphe nuclei neuron': {},\n", + " 'neuron of the dorsal spinal cord': {},\n", + " 'neuron of the ventral spinal cord': {},\n", + " 'neuron of the substantia nigra': {},\n", + " 'neuron of the forebrain': {'olfactory granule cell': {},\n", + " 'cortical granule cell': {'hippocampal granule cell': {'dentate gyrus granule cell': {}}},\n", + " 'striatum neuron': {'Island of Calleja granule cell': {}},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {}},\n", + " 'horizontal pyramidal neuron': {},\n", + " 'inverted pyramidal neuron': {},\n", + " 'stellate pyramidal neuron': {},\n", + " 'tufted pyramidal neuron': {},\n", + " 'untufted pyramidal neuron': {}},\n", + " 'sensory processing neuron': {},\n", + " 'afferent neuron': {'sensory neuron': {'neuronal receptor cell': {'pain receptor cell': {'unimodal nocireceptor': {},\n", + " 'polymodal nocireceptor': {}},\n", + " 'touch receptor cell': {},\n", + " 'gravity sensitive cell': {},\n", + " 'acceleration receptive cell': {},\n", + " 'thermoreceptor cell': {'cold sensing thermoreceptor cell': {},\n", + " 'warmth sensing thermoreceptor cell': {}},\n", + " 'olfactory receptor cell': {'ciliated olfactory receptor neuron': {},\n", + " 'microvillous olfactory receptor neuron': {},\n", + " 'crypt olfactory receptor neuron': {}},\n", + " 'photoreceptor cell': {'eye photoreceptor cell': {'R7 photoreceptor cell': {},\n", + " 'camera-type eye photoreceptor cell': {'retinal cone cell': {'L cone cell': {},\n", + " 'M cone cell': {'510 nm-cone': {}},\n", + " 'S cone cell': {},\n", + " 'UV cone cell': {'360 nm-cone': {}}},\n", + " 'retinal rod cell': {}},\n", + " 'compound eye photoreceptor cell': {'R1 photoreceptor cell': {},\n", + " 'R2 photoreceptor cell': {},\n", + " 'R3 photoreceptor cell': {},\n", + " 'R4 photoreceptor cell': {},\n", + " 'R5 photoreceptor cell': {},\n", + " 'R6 photoreceptor cell': {},\n", + " 'R8 photoreceptor cell': {}}},\n", + " 'visible light photoreceptor cell': {'photopic photoreceptor cell': {'blue sensitive photoreceptor cell': {},\n", + " 'green sensitive photoreceptor cell': {},\n", + " 'red sensitive photoreceptor cell': {}},\n", + " 'R1 photoreceptor cell': {},\n", + " 'R2 photoreceptor cell': {},\n", + " 'R3 photoreceptor cell': {},\n", + " 'R4 photoreceptor cell': {},\n", + " 'R5 photoreceptor cell': {},\n", + " 'R6 photoreceptor cell': {},\n", + " 'R8 photoreceptor cell': {}},\n", + " 'scotopic photoreceptor cell': {},\n", + " 'UV sensitive photoreceptor cell': {'R7 photoreceptor cell': {}}},\n", + " 'Rohon-Beard neuron': {},\n", + " 'humidity receptor cell': {},\n", + " 'neuromast hair cell': {'anterior lateral line neuromast hair cell': {},\n", + " 'posterior lateral line neuromast hair cell': {}},\n", + " 'ear hair cell': {'vestibular hair cell': {'type II vestibular sensory cell': {'type 2 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}},\n", + " 'type I vestibular sensory cell': {'type 1 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}}},\n", + " 'tether cell': {},\n", + " 'macular hair cell': {},\n", + " 'cochlea auditory hair cell': {'cochlear inner hair cell': {},\n", + " 'cochlear outer hair cell': {}}},\n", + " 'stretch receptor cell': {'pressoreceptor cell': {}},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'sensory neuron of dorsal root ganglion': {},\n", + " 'trigeminal sensory neuron': {}},\n", + " 'mechanoreceptor cell': {'touch receptor cell': {},\n", + " 'gravity sensitive cell': {},\n", + " 'slowly adapting mechanoreceptor cell': {},\n", + " 'sensory hair cell': {'auditory hair cell': {'macular hair cell': {},\n", + " 'cochlea auditory hair cell': {'cochlear inner hair cell': {},\n", + " 'cochlear outer hair cell': {}}},\n", + " 'neuromast hair cell': {'anterior lateral line neuromast hair cell': {},\n", + " 'posterior lateral line neuromast hair cell': {}},\n", + " 'ear hair cell': {'vestibular hair cell': {'type II vestibular sensory cell': {'type 2 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 2 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}},\n", + " 'type I vestibular sensory cell': {'type 1 vestibular sensory cell of stato-acoustic epithelium': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of utricle of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of macula of saccule of membranous labyrinth': {},\n", + " 'type 1 vestibular sensory cell of epithelium of crista of ampulla of semicircular duct of membranous labyrinth': {}}},\n", + " 'tether cell': {},\n", + " 'macular hair cell': {},\n", + " 'cochlea auditory hair cell': {'cochlear inner hair cell': {},\n", + " 'cochlear outer hair cell': {}}}},\n", + " 'cutaneous/subcutaneous mechanoreceptor cell': {'hair-tylotrich neuron': {},\n", + " 'hair-down neuron': {}}},\n", + " 'extramedullary cell': {},\n", + " 'primary sensory neuron (sensu Teleostei)': {'Rohon-Beard neuron': {}},\n", + " 'olfactory bulb interneuron': {'olfactory granule cell': {},\n", + " 'periglomerular cell': {},\n", + " 'mitral cell': {}},\n", + " 'vomeronasal sensory neuron': {},\n", + " 'peripheral sensory neuron': {'sensory neuron of spinal nerve': {}},\n", + " 'vestibular afferent neuron': {'bouton vestibular afferent neuron': {},\n", + " 'calyx vestibular afferent neuron': {}}}},\n", + " 'efferent neuron': {'motor neuron': {'primary motor neuron (sensu Teleostei)': {'CAP motoneuron': {}},\n", + " 'secondary motor neuron (sensu Teleostei)': {},\n", + " 'somatomotor neuron': {'cranial somatomotor neuron': {},\n", + " 'lower motor neuron': {'spinal accessory motor neuron': {},\n", + " 'gamma motor neuron': {'dynamic gamma motor neuron': {},\n", + " 'static gamma motor neuron': {}},\n", + " 'alpha motor neuron': {},\n", + " 'anterior horn motor neuron': {},\n", + " 'beta motor neuron': {'static beta motor neuron': {},\n", + " 'dynamic beta motor neuron': {}}}},\n", + " 'visceromotor neuron': {'cranial visceromotor neuron': {}},\n", + " 'inhibitory motor neuron': {},\n", + " 'upper motor neuron': {},\n", + " 'spinal cord motor neuron': {'lateral motor column neuron': {},\n", + " 'anterior horn motor neuron': {}},\n", + " 'cranial motor neuron': {'branchiomotor neuron': {},\n", + " 'cranial somatomotor neuron': {},\n", + " 'cranial visceromotor neuron': {}},\n", + " 'brainstem motor neuron': {},\n", + " 'trigeminal motor neuron': {}},\n", + " 'Purkinje cell': {},\n", + " 'neuroendocrine cell': {'amine precursor uptake and decarboxylation cell': {'chromaffin cell': {'type EC enteroendocrine cell': {'type EC2 enteroendocrine cell': {},\n", + " 'type EC1 enteroendocrine cell': {},\n", + " 'type ECL enteroendocrine cell': {}},\n", + " 'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'interrenal chromaffin cell': {'interrenal norepinephrine type cell': {},\n", + " 'interrenal epinephrin secreting cell': {}},\n", + " 'chromaffin cell of paraganglion': {'chromaffin cell of paraaortic body': {}},\n", + " 'chromaffin cell of adrenal gland': {'adrenal medulla chromaffin cell': {'type II cell of adrenal medulla': {},\n", + " 'type I cell of adrenal medulla': {}},\n", + " 'adrenal cortex chromaffin cell': {}},\n", + " 'chromaffin cell of ovary': {'chromaffin cell of right ovary': {},\n", + " 'chromaffin cell of left ovary': {}}}},\n", + " 'paraganglial type 1 cell': {},\n", + " 'Feyrter cell': {'dense-core granulated cell of epithelium of trachea': {}},\n", + " 'magnocellular neurosecretory cell': {'oxytocin-secreting magnocellular cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'gonadotropin-releasing hormone neuron': {},\n", + " 'prostate neuroendocrine cell': {},\n", + " 'stomach neuroendocrine cell': {},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'parvocellular neurosecretory cell': {},\n", + " 'neuroendocrine cell of epithelium of crypt of Lieberkuhn': {}},\n", + " 'eurydendroid cell': {}},\n", + " 'nitrergic neuron': {},\n", + " 'primary neuron (sensu Teleostei)': {'primary sensory neuron (sensu Teleostei)': {'Rohon-Beard neuron': {}},\n", + " 'primary motor neuron (sensu Teleostei)': {'CAP motoneuron': {}},\n", + " 'primary interneuron (sensu Teleostei)': {}},\n", + " 'secondary neuron (sensu Teleostei)': {'secondary motor neuron (sensu Teleostei)': {}},\n", + " 'GABAergic neuron': {'GABAergic interneuron': {'basket cell': {'cerebellum basket cell': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'Kolmer-Agduhr neuron': {},\n", + " 'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'GABAnergic interplexiform cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'Martinotti neuron': {'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'T Martinotti neuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'fan Martinotti neuron': {'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {}}},\n", + " 'GABAergic amacrine cell': {}},\n", + " 'medium spiny neuron': {'direct pathway medium spiny neuron': {'matrix D1 medium spiny neuron': {},\n", + " 'striosomal D1 medium spiny neuron': {}},\n", + " 'indirect pathway medium spiny neuron': {'matrix D2 medium spiny neuron': {},\n", + " 'striosomal D2 medium spiny neuron': {}},\n", + " 'D1/D2-hybrid medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D1 medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D2 medium spiny neuron': {},\n", + " 'RXFP1-positive interface island D1-medium spiny neuron': {},\n", + " 'eccentric medium spiny neuron': {}},\n", + " 'meis2 expressing cortical GABAergic cell': {},\n", + " 'cartwheel cell': {}},\n", + " 'commissural neuron': {},\n", + " 'glutamatergic neuron': {'retinal bipolar neuron': {'ON-bipolar cell': {'rod bipolar cell': {'rod bipolar cell (sensu Mus)': {}},\n", + " 'ON-blue cone bipolar cell': {},\n", + " 'diffuse bipolar 4 cell': {},\n", + " 'diffuse bipolar 6 cell': {},\n", + " 'invaginating midget bipolar cell': {},\n", + " 'giant bipolar cell': {}},\n", + " 'OFF-bipolar cell': {'diffuse bipolar 1 cell': {},\n", + " 'diffuse bipolar 2 cell': {},\n", + " 'diffuse bipolar 3a cell': {},\n", + " 'diffuse bipolar 3b cell': {},\n", + " 'flat midget bipolar cell': {},\n", + " 'OFFx cell': {}},\n", + " 'cone retinal bipolar cell': {'type 1 cone bipolar cell (sensu Mus)': {},\n", + " 'type 2 cone bipolar cell (sensu Mus)': {},\n", + " 'type 3 cone bipolar cell (sensu Mus)': {'type 3a cone bipolar cell': {},\n", + " 'type 3b cone bipolar cell': {}},\n", + " 'type 4 cone bipolar cell (sensu Mus)': {},\n", + " 'type 5 cone bipolar cell (sensu Mus)': {'type 5a cone bipolar cell': {},\n", + " 'type 5b cone bipolar cell': {}},\n", + " 'type 6 cone bipolar cell (sensu Mus)': {},\n", + " 'type 7 cone bipolar cell (sensu Mus)': {},\n", + " 'type 8 cone bipolar cell (sensu Mus)': {},\n", + " 'type 9 cone bipolar cell (sensu Mus)': {}}},\n", + " 'upper motor neuron': {},\n", + " 'cerebellum glutamatergic neuron': {'cerebellar granule cell': {}},\n", + " 'intratelencephalic-projecting glutamatergic cortical neuron': {'L2/3-6 intratelencephalic projecting glutamatergic cortical neuron': {'L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}}}},\n", + " 'extratelencephalic-projecting glutamatergic cortical neuron': {'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'von Economo neuron': {}},\n", + " 'near-projecting glutamatergic cortical neuron': {'L5/6 near-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'corticothalamic-projecting glutamatergic cortical neuron': {'L6 corticothalamic-projecting glutamatergic cortical neuron': {'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}}},\n", + " 'L6b glutamatergic cortical neuron': {'L6b subplate glutamatergic neuron of the primary motor cortex': {}},\n", + " 'amygdala excitatory neuron': {},\n", + " 'thalamic excitatory neuron': {},\n", + " 'unipolar brush cell': {}},\n", + " 'serotonergic neuron': {},\n", + " 'bistratified cell': {'bistratified retinal ganglion cell': {'G3 retinal ganglion cell': {},\n", + " 'G7 retinal ganglion cell': {},\n", + " 'retinal ganglion cell D1': {},\n", + " 'retinal ganglion cell D2': {},\n", + " 'M11 retinal ganglion cell': {},\n", + " 'M12 retinal ganglion cell': {},\n", + " 'M13 retinal ganglion cell': {},\n", + " 'M14 retinal ganglion cell': {},\n", + " 'small bistratified retinal ganglion cell': {}},\n", + " 'bistratified retinal amacrine cell': {'A2 amacrine cell': {},\n", + " 'flat bistratified amacrine cell': {},\n", + " 'A2-like amacrine cell': {},\n", + " 'diffuse bistratified amacrine cell': {},\n", + " 'DAPI-3 amacrine cell': {},\n", + " 'asymmetric bistratified amacrine cell': {},\n", + " 'wavy bistratified amacrine cell': {}}},\n", + " 'visual system neuron': {'retinal bipolar neuron': {'ON-bipolar cell': {'rod bipolar cell': {'rod bipolar cell (sensu Mus)': {}},\n", + " 'ON-blue cone bipolar cell': {},\n", + " 'diffuse bipolar 4 cell': {},\n", + " 'diffuse bipolar 6 cell': {},\n", + " 'invaginating midget bipolar cell': {},\n", + " 'giant bipolar cell': {}},\n", + " 'OFF-bipolar cell': {'diffuse bipolar 1 cell': {},\n", + " 'diffuse bipolar 2 cell': {},\n", + " 'diffuse bipolar 3a cell': {},\n", + " 'diffuse bipolar 3b cell': {},\n", + " 'flat midget bipolar cell': {},\n", + " 'OFFx cell': {}},\n", + " 'cone retinal bipolar cell': {'type 1 cone bipolar cell (sensu Mus)': {},\n", + " 'type 2 cone bipolar cell (sensu Mus)': {},\n", + " 'type 3 cone bipolar cell (sensu Mus)': {'type 3a cone bipolar cell': {},\n", + " 'type 3b cone bipolar cell': {}},\n", + " 'type 4 cone bipolar cell (sensu Mus)': {},\n", + " 'type 5 cone bipolar cell (sensu Mus)': {'type 5a cone bipolar cell': {},\n", + " 'type 5b cone bipolar cell': {}},\n", + " 'type 6 cone bipolar cell (sensu Mus)': {},\n", + " 'type 7 cone bipolar cell (sensu Mus)': {},\n", + " 'type 8 cone bipolar cell (sensu Mus)': {},\n", + " 'type 9 cone bipolar cell (sensu Mus)': {}}}},\n", + " 'cardiac neuron': {},\n", + " 'galanergic neuron': {},\n", + " 'hypocretin-secreting neuron': {},\n", + " 'histaminergic neuron': {},\n", + " 'spiral ganglion neuron': {'type 1 spiral ganglion neuron': {},\n", + " 'type 2 spiral ganglion neuron': {}},\n", + " 'olfactory bulb tufted cell': {},\n", + " 'glycinergic neuron': {'cartwheel cell': {},\n", + " 'glycinergic amacrine cell': {}},\n", + " 'central nervous system neuron': {'CNS interneuron': {'CNS short range interneuron': {},\n", + " 'CNS long range interneuron': {},\n", + " 'local interneuron': {},\n", + " 'spinal cord interneuron': {'Kolmer-Agduhr neuron': {},\n", + " 'dorsal horn interneuron': {},\n", + " 'spinal cord ventral column interneuron': {}},\n", + " 'cortical interneuron': {'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'hippocampal interneuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}}},\n", + " 'olfactory bulb interneuron': {'olfactory granule cell': {},\n", + " 'periglomerular cell': {},\n", + " 'mitral cell': {}},\n", + " 'cerebellum basket cell': {},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}},\n", + " 'unipolar brush cell': {}},\n", + " 'Cajal-Retzius cell': {},\n", + " 'raphe nuclei neuron': {},\n", + " 'neuron of the dorsal spinal cord': {},\n", + " 'neuron of the ventral spinal cord': {},\n", + " 'neuron of the substantia nigra': {},\n", + " 'monostratified cell': {},\n", + " 'cranial visceromotor neuron': {},\n", + " 'cerebral cortex neuron': {'cortical granule cell': {'hippocampal granule cell': {'dentate gyrus granule cell': {}}},\n", + " 'hippocampal neuron': {'hippocampal granule cell': {'dentate gyrus granule cell': {}},\n", + " 'hippocampal interneuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}},\n", + " 'hippocampal pyramidal neuron': {},\n", + " 'hippocampal CA1-3 neuron': {},\n", + " 'dentate gyrus neuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " 'dentate gyrus granule cell': {},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {},\n", + " 'dentate gyrus kisspeptin neuron': {}}},\n", + " 'cortical interneuron': {'cerebral cortex GABAergic interneuron': {'rosehip neuron': {},\n", + " 'neocortex basket cell': {'large basket cell': {},\n", + " 'nest basket cell': {},\n", + " 'small basket cell': {}},\n", + " 'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {},\n", + " 'alpha7 GABAergic cortical interneuron (Mmus)': {},\n", + " 'lamp5 GABAergic cortical interneuron': {'canopy lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {},\n", + " 'neurogliaform lamp5 GABAergic cortical interneuron (Mmus)': {}},\n", + " 'sncg GABAergic cortical interneuron': {},\n", + " 'vip GABAergic cortical interneuron': {'L2/3 bipolar vip GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 vip cortical GABAergic interneuron (Mmus)': {},\n", + " 'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'sst GABAergic cortical interneuron': {'L5 T-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L4 sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L6 tyrosine hydroxylase sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'L5/6 non-Martinotti sst GABAergic cortical interneuron (Mmus)': {},\n", + " 'sst chodl GABAergic cortical interneuron': {'long-range projecting sst GABAergic cortical interneuron (Mmus)': {}},\n", + " 'oxytocin receptor sst GABAergic cortical interneuron': {}},\n", + " 'pvalb GABAergic cortical interneuron': {'chandelier pvalb GABAergic cortical interneuron': {}},\n", + " 'medial ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'caudal ganglionic eminence derived GABAergic cortical interneuron': {},\n", + " 'L5/6 cck cortical GABAergic interneuron (Mmus)': {'L5/6 cck, vip cortical GABAergic interneuron (Mmus)': {}},\n", + " 'reelin GABAergic cortical interneuron': {}},\n", + " 'hippocampal interneuron': {'dentate gyrus of hippocampal formation basket cell': {},\n", + " \"Ammon's horn basket cell\": {}}},\n", + " 'intratelencephalic-projecting glutamatergic cortical neuron': {'L2/3-6 intratelencephalic projecting glutamatergic cortical neuron': {'L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}}}},\n", + " 'extratelencephalic-projecting glutamatergic cortical neuron': {'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'von Economo neuron': {}},\n", + " 'near-projecting glutamatergic cortical neuron': {'L5/6 near-projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'corticothalamic-projecting glutamatergic cortical neuron': {'L6 corticothalamic-projecting glutamatergic cortical neuron': {'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}}},\n", + " 'L6b glutamatergic cortical neuron': {'L6b subplate glutamatergic neuron of the primary motor cortex': {}},\n", + " 'meis2 expressing cortical GABAergic cell': {},\n", + " 'cerebral cortex pyramidal neuron': {'hippocampal pyramidal neuron': {},\n", + " 'primary motor cortex pyramidal cell': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'Meynert cell': {},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex': {'stellate L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {},\n", + " 'inverted L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex (Mmus)': {}},\n", + " 'corticothalamic VAL/VM projecting glutamatergic neuron of the primary motor cortex': {}},\n", + " 'L5 extratelencephalic projecting glutamatergic cortical neuron': {'Betz cell': {'Betz upper motor neuron': {},\n", + " 'spinal interneuron synapsing Betz cell': {}},\n", + " 'non-medulla, extratelencephalic-projecting glutamatergic neuron of the primary motor cortex': {},\n", + " 'medulla-projecting glutamatergic neuron of the primary motor cortex': {}}}},\n", + " 'spinal cord motor neuron': {'lateral motor column neuron': {},\n", + " 'anterior horn motor neuron': {}},\n", + " 'magnocellular neurosecretory cell': {'oxytocin-secreting magnocellular cell': {},\n", + " 'vasopressin-secreting magnocellular cell': {}},\n", + " 'neuron of the forebrain': {'olfactory granule cell': {},\n", + " 'cortical granule cell': {'hippocampal granule cell': {'dentate gyrus granule cell': {}}},\n", + " 'striatum neuron': {'Island of Calleja granule cell': {}},\n", + " 'dentate gyrus of hippocampal formation stellate cell': {}},\n", + " 'retrotrapezoid nucleus neuron': {},\n", + " 'medium spiny neuron': {'direct pathway medium spiny neuron': {'matrix D1 medium spiny neuron': {},\n", + " 'striosomal D1 medium spiny neuron': {}},\n", + " 'indirect pathway medium spiny neuron': {'matrix D2 medium spiny neuron': {},\n", + " 'striosomal D2 medium spiny neuron': {}},\n", + " 'D1/D2-hybrid medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D1 medium spiny neuron': {},\n", + " 'nucleus accumbens shell and olfactory tubercle D2 medium spiny neuron': {},\n", + " 'RXFP1-positive interface island D1-medium spiny neuron': {},\n", + " 'eccentric medium spiny neuron': {}},\n", + " 'lateral ventricle neuron': {},\n", + " 'cerebellar neuron': {'Purkinje cell': {},\n", + " 'cerebellar stellate cell': {},\n", + " 'cerebellum basket cell': {},\n", + " 'cerebellum glutamatergic neuron': {'cerebellar granule cell': {}},\n", + " 'cerebellar inhibitory GABAergic interneuron': {'cerebellar Golgi cell': {},\n", + " 'Lugaro cell': {}}},\n", + " 'spinal cord medial motor column neuron': {},\n", + " 'brainstem motor neuron': {},\n", + " 'midbrain dopaminergic neuron': {},\n", + " 'amygdala excitatory neuron': {},\n", + " 'thalamic excitatory neuron': {},\n", + " 'mammillary body neuron': {},\n", + " 'reticulospinal neuron': {},\n", + " 'amygdala pyramidal neuron': {},\n", + " 'hypothalamus kisspeptin neuron': {'KNDy neuron': {'arcuate nucleus of hypothalamus KNDy neuron': {},\n", + " 'rostral periventricular region of the third ventricle KNDy neuron': {}}},\n", + " 'octopus cell of the mammalian cochlear nucleus': {},\n", + " 'cartwheel cell': {},\n", + " 'bushy cell': {'spherical bushy cell': {}, 'globular bushy cell': {}},\n", + " 'koniocellular cell': {}},\n", + " 'lateral line ganglion neuron': {'anterior lateral line ganglion neuron': {},\n", + " 'posterior lateral line ganglion neuron': {}},\n", + " 'peripheral nervous system neuron': {'autonomic neuron': {'enteric neuron': {},\n", + " 'parasympathetic neuron': {},\n", + " 'sympathetic neuron': {'sympathetic noradrenergic neuron': {},\n", + " 'sympathetic cholinergic neuron': {}}},\n", + " 'kidney nerve cell': {},\n", + " 'peripheral sensory neuron': {'sensory neuron of spinal nerve': {}}},\n", + " 'hippocampal CA4 neuron': {},\n", + " 'midbrain-derived inhibitory neuron': {},\n", + " 'kisspeptin neuron': {'hypothalamus kisspeptin neuron': {'KNDy neuron': {'arcuate nucleus of hypothalamus KNDy neuron': {},\n", + " 'rostral periventricular region of the third ventricle KNDy neuron': {}}},\n", + " 'dentate gyrus kisspeptin neuron': {}},\n", + " 'somatosensory neuron': {'touch receptor cell': {},\n", + " 'Rohon-Beard neuron': {},\n", + " 'sensory neuron of dorsal root ganglion': {},\n", + " 'trigeminal sensory neuron': {}},\n", + " 'trigeminal neuron': {'trigeminal sensory neuron': {},\n", + " 'trigeminal motor neuron': {}},\n", + " 'catecholaminergic neuron': {'adrenergic neuron': {},\n", + " 'dopaminergic neuron': {'dopamanergic interplexiform cell': {},\n", + " 'midbrain dopaminergic neuron': {}},\n", + " 'noradrenergic neuron': {'sympathetic noradrenergic neuron': {}}}},\n", + " 'pinealocyte': {'type I pinealocyte': {}, 'type II pinealocyte': {}},\n", + " 'choroid plexus epithelial cell': {},\n", + " 'leptomeningeal cell': {},\n", + " 'compound eye cone cell': {'posterior cone cell (sensu Endopterygota)': {},\n", + " 'anterior cone cell (sensu Endopterygota)': {},\n", + " 'equatorial cone cell (sensu Endopterygota)': {}},\n", + " 'central nervous system macrophage': {'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'meningeal macrophage': {},\n", + " 'choroid-plexus macrophage': {},\n", + " 'perivascular macrophage': {}},\n", + " 'basal cell of olfactory epithelium': {'olfactory epithelial supporting cell': {},\n", + " 'globose cell of olfactory epithelium': {},\n", + " 'basal proper cell of olfactory epithelium': {}},\n", + " 'cerebellar granule cell precursor': {},\n", + " 'fibroblast of choroid plexus': {},\n", + " 'central nervous system pericyte': {'brain pericyte': {}},\n", + " 'smooth muscle cell of the brain vasculature': {},\n", + " 'intrafusal muscle fiber': {'nuclear chain fiber': {},\n", + " 'nuclear bag fiber': {'dynamic nuclear bag fiber': {},\n", + " 'static nuclear bag fiber': {}}},\n", + " 'retinal cell': {'amacrine cell': {'flag amacrine cell': {'flag A amacrine cell': {},\n", + " 'flag B amacrine cell': {}},\n", + " 'AB diffuse-1 amacrine cell': {},\n", + " 'AB diffuse-2 amacrine cell': {},\n", + " 'spider amacrine cell': {},\n", + " 'monostratified amacrine cell': {},\n", + " 'broad diffuse amacrine cell': {},\n", + " 'recurving diffuse amacrine cell': {},\n", + " 'starburst amacrine cell': {},\n", + " 'diffuse multistratified amacrine cell': {},\n", + " 'AB broad diffuse-1 amacrine cell': {},\n", + " 'AB broad diffuse-2 amacrine cell': {},\n", + " 'fountain amacrine cell': {},\n", + " 'WF1 amacrine cell': {},\n", + " 'WF2 amacrine cell': {},\n", + " 'WF3-1 amacrine cell': {},\n", + " 'WF3-2 amacrine cell': {},\n", + " 'WF4 amacrine cell': {},\n", + " 'indoleamine-accumulating amacrine cell': {},\n", + " 'bistratified retinal amacrine cell': {'A2 amacrine cell': {},\n", + " 'flat bistratified amacrine cell': {},\n", + " 'A2-like amacrine cell': {},\n", + " 'diffuse bistratified amacrine cell': {},\n", + " 'DAPI-3 amacrine cell': {},\n", + " 'asymmetric bistratified amacrine cell': {},\n", + " 'wavy bistratified amacrine cell': {}},\n", + " 'narrow field retinal amacrine cell': {},\n", + " 'medium field retinal amacrine cell': {},\n", + " 'wide field retinal amacrine cell': {},\n", + " 'displaced amacrine cell': {},\n", + " 'GABAergic amacrine cell': {},\n", + " 'glycinergic amacrine cell': {}},\n", + " 'Mueller cell': {},\n", + " 'retinal bipolar neuron': {'ON-bipolar cell': {'rod bipolar cell': {'rod bipolar cell (sensu Mus)': {}},\n", + " 'ON-blue cone bipolar cell': {},\n", + " 'diffuse bipolar 4 cell': {},\n", + " 'diffuse bipolar 6 cell': {},\n", + " 'invaginating midget bipolar cell': {},\n", + " 'giant bipolar cell': {}},\n", + " 'OFF-bipolar cell': {'diffuse bipolar 1 cell': {},\n", + " 'diffuse bipolar 2 cell': {},\n", + " 'diffuse bipolar 3a cell': {},\n", + " 'diffuse bipolar 3b cell': {},\n", + " 'flat midget bipolar cell': {},\n", + " 'OFFx cell': {}},\n", + " 'cone retinal bipolar cell': {'type 1 cone bipolar cell (sensu Mus)': {},\n", + " 'type 2 cone bipolar cell (sensu Mus)': {},\n", + " 'type 3 cone bipolar cell (sensu Mus)': {'type 3a cone bipolar cell': {},\n", + " 'type 3b cone bipolar cell': {}},\n", + " 'type 4 cone bipolar cell (sensu Mus)': {},\n", + " 'type 5 cone bipolar cell (sensu Mus)': {'type 5a cone bipolar cell': {},\n", + " 'type 5b cone bipolar cell': {}},\n", + " 'type 6 cone bipolar cell (sensu Mus)': {},\n", + " 'type 7 cone bipolar cell (sensu Mus)': {},\n", + " 'type 8 cone bipolar cell (sensu Mus)': {},\n", + " 'type 9 cone bipolar cell (sensu Mus)': {}}},\n", + " 'retinal melanocyte': {},\n", + " 'retinal blood vessel endothelial cell': {},\n", + " 'retinal pigment epithelial cell': {},\n", + " 'compound eye retinal cell': {},\n", + " 'interplexiform cell': {'dopamanergic interplexiform cell': {},\n", + " 'GABAnergic interplexiform cell': {}},\n", + " 'retinoblast': {},\n", + " 'retinal astrocyte': {}},\n", + " 'forebrain neuroblast': {},\n", + " 'mesothelial cell of dura mater': {},\n", + " 'cerebral cortex endothelial cell': {},\n", + " 'pituitary gland cell': {'chromophil cell of anterior pituitary gland': {'acidophil cell of pars distalis of adenohypophysis': {'mammosomatotroph': {},\n", + " 'mammotroph': {},\n", + " 'somatotroph': {}},\n", + " 'basophil cell of pars distalis of adenohypophysis': {'gonadtroph': {},\n", + " 'thyrotroph': {},\n", + " 'corticotroph': {}}},\n", + " 'folliculostellate cell': {'folliculostellate cell of pars distalis of adenohypophysis': {}},\n", + " 'pituicyte': {}},\n", + " 'hypothalamus cell': {'parvocellular neurosecretory cell': {}},\n", + " 'brain microvascular endothelial cell': {},\n", + " 'mesothelial fibroblast of the leptomeninx': {'vascular leptomeningeal cell': {'vascular leptomeningeal cell (Mmus)': {}},\n", + " 'arachnoid barrier cell': {}},\n", + " 'hypendymal cell': {},\n", + " 'taste receptor cell of tongue': {}},\n", + " 'connective tissue cell': {'fibroblast': {'fibroblast neural crest derived': {'keratocyte': {}},\n", + " 'reticular cell': {'fibroblastic reticular cell': {'lymph node fibroblastic reticular cell': {'lymph node marginal reticular cell': {},\n", + " 'B cell zone reticular cell': {},\n", + " 'T cell zone reticular cell': {},\n", + " 'medullary reticular cell': {}}},\n", + " 'reticular cell of splenic cord': {}},\n", + " 'hepatic stellate cell': {},\n", + " 'perijunctional fibroblast': {},\n", + " 'marrow fibroblast': {},\n", + " 'pulmonary interstitial fibroblast': {'alveolar type 1 fibroblast cell': {},\n", + " 'alveolar type 2 fibroblast cell': {}},\n", + " 'preadipocyte': {'brown preadipocyte': {},\n", + " 'mesenteric preadipocyte': {},\n", + " 'omentum preadipocyte': {},\n", + " 'preadipocyte of the breast': {},\n", + " 'perirenal preadipocyte': {},\n", + " 'visceral preadipocyte': {},\n", + " 'subcutaneous preadipocyte': {}},\n", + " 'pancreatic stellate cell': {},\n", + " 'fibroblast of cardiac tissue': {'cardiac ventricle fibroblast': {},\n", + " 'cardiac atrium fibroblast': {}},\n", + " 'fibroblast of choroid plexus': {},\n", + " 'fibroblast of the conjunctiva': {},\n", + " 'fibroblast of gingiva': {},\n", + " 'fibroblast of lung': {'bronchus fibroblast of lung': {},\n", + " 'alveolar type 1 fibroblast cell': {},\n", + " 'alveolar type 2 fibroblast cell': {},\n", + " 'lung perichondrial fibroblast': {}},\n", + " 'fibroblast of lymphatic vessel': {},\n", + " 'fibroblast of mammary gland': {},\n", + " 'fibroblast of periodontium': {'fibroblast of peridontal ligament': {}},\n", + " 'fibroblast of pulmonary artery': {},\n", + " 'fibroblast of villous mesenchyme': {},\n", + " 'skin fibroblast': {'fibroblast of dermis': {'fibroblast of papillary layer of dermis': {},\n", + " 'fibroblast of the reticular layer of dermis': {}},\n", + " 'fibroblast of skin of back': {'fibroblast of upper back skin': {}},\n", + " 'foreskin fibroblast': {},\n", + " 'fibroblast of pedal digit skin': {},\n", + " 'fibroblast of skin of abdomen': {},\n", + " 'fibroblast of upper leg skin': {},\n", + " 'fibroblast of arm': {},\n", + " 'fibroblast of skin of scalp': {}},\n", + " 'thymic fibroblast type 1': {},\n", + " 'thymic fibroblast type 2': {},\n", + " 'hepatic portal fibroblast': {},\n", + " 'fibroblast of connective tissue of prostate': {},\n", + " 'fibroblast of outer membrane of prostatic capsule': {},\n", + " 'fibroblast of subepithelial connective tissue of prostatic gland': {},\n", + " 'fibroblast of areolar connective tissue': {},\n", + " 'fibroblast of connective tissue of nonglandular part of prostate': {},\n", + " 'fibroblast of connective tissue of glandular part of prostate': {},\n", + " 'fibroblast of tunica adventitia of artery': {'fibroblast of the aortic adventitia': {}},\n", + " 'fibroblast of dense regular elastic tissue': {},\n", + " 'kidney interstitial fibroblast': {'renal medullary fibroblast': {},\n", + " 'renal cortical fibroblast': {}},\n", + " 'muscle fibroblast': {'skeletal muscle fibroblast': {}},\n", + " 'embryonic fibroblast': {},\n", + " 'splenic fibroblast': {'reticular cell of splenic cord': {}},\n", + " 'ovarian fibroblast': {},\n", + " 'pericardium fibroblast': {},\n", + " 'gallbladder fibroblast': {},\n", + " 'optic choroid fibroblast': {},\n", + " 'fibroblast of breast': {'preadipocyte of the breast': {}},\n", + " 'mesothelial fibroblast': {'mesothelial fibroblast of the leptomeninx': {'vascular leptomeningeal cell': {'vascular leptomeningeal cell (Mmus)': {}},\n", + " 'arachnoid barrier cell': {}}},\n", + " 'perichondrial fibroblast': {'lung perichondrial fibroblast': {}}},\n", + " 'chondroblast': {},\n", + " 'osteoblast': {'cementoblast': {},\n", + " 'terminally differentiated osteoblast': {},\n", + " 'non-terminally differentiated osteoblast': {},\n", + " 'femural osteoblast': {},\n", + " 'calvarial osteoblast': {}},\n", + " 'mesenchymal stem cell': {'metanephric mesenchyme stem cell': {},\n", + " 'hair follicle dermal papilla cell': {'hair follicle dermal papilla cell of scalp': {}},\n", + " 'nephrogenic mesenchyme stem cell': {},\n", + " 'angioblastic mesenchymal cell': {'adult endothelial progenitor cell': {'colony forming unit – Hill cell': {},\n", + " 'circulating angiogenic cell': {},\n", + " 'endothelial colony forming cell': {}}},\n", + " 'amnion mesenchymal stem cell': {},\n", + " 'mesenchymal stem cell of the bone marrow': {'mesenchymal stem cell of femoral bone marrow': {}},\n", + " 'chorionic membrane mesenchymal stem cell': {},\n", + " 'mesenchymal stem cell of umbilical cord': {\"mesenchymal stem cell of Wharton's jelly\": {}},\n", + " 'mesenchymal stem cell of adipose tissue': {'mesenchymal stem cell of abdominal adipose tissue': {}},\n", + " 'hepatic mesenchymal stem cell': {},\n", + " 'vertebral mesenchymal stem cell': {},\n", + " 'amniotic stem cell': {},\n", + " 'mesenchymal lymphangioblast': {},\n", + " 'placental amniotic mesenchymal stromal cell': {}},\n", + " 'fat cell': {'white fat cell': {},\n", + " 'brown fat cell': {},\n", + " 'beige adipocyte': {},\n", + " 'neural crest derived fat cell': {},\n", + " 'subcutaneous fat cell': {},\n", + " 'adipocyte of omentum tissue': {},\n", + " 'perirenal adipocyte': {},\n", + " 'adipocyte of breast': {},\n", + " 'epicardial adipocyte': {'adipocyte of epicardial fat of right ventricle': {},\n", + " 'adipocyte of epicardial fat of left ventricle': {}}},\n", + " 'odontocyte': {},\n", + " 'myofibroblast cell': {'fibroblastic reticular cell': {'lymph node fibroblastic reticular cell': {'lymph node marginal reticular cell': {},\n", + " 'B cell zone reticular cell': {},\n", + " 'T cell zone reticular cell': {},\n", + " 'medullary reticular cell': {}}},\n", + " 'kidney interstitial myofibroblast': {},\n", + " 'secondary crest myofibroblast': {}},\n", + " 'GLR cell': {},\n", + " 'connective tissue type mast cell': {},\n", + " 'stromal cell': {'fibrocyte': {'tendon cell': {},\n", + " 'otic fibrocyte': {'type 2 otic fibrocyte': {},\n", + " 'type 5 otic fibrocyte': {},\n", + " 'type 4 otic fibrocyte': {},\n", + " 'type 3 otic fibrocyte': {},\n", + " 'type 1 otic fibrocyte': {}},\n", + " 'fibrocyte of adventitia of ureter': {},\n", + " 'kidney interstitial fibrocyte': {}},\n", + " 'hyalocyte': {},\n", + " 'extracellular matrix secreting cell': {'glycosaminoglycan secreting cell': {'chondrocyte': {'hypertrophic chondrocyte': {},\n", + " 'columnar chondrocyte': {},\n", + " 'tracheobronchial chondrocyte': {},\n", + " 'growth plate cartilage chondrocyte': {},\n", + " 'articular chondrocyte': {'periarticular chondrocyte': {},\n", + " 'articular chondrocyte of knee joint': {}}}},\n", + " 'hepatic stellate cell': {},\n", + " 'cuticle secreting cell': {'socket cell (sensu Nematoda)': {},\n", + " 'pore cell': {}},\n", + " 'eggshell secreting cell': {},\n", + " 'glycocalyx secreting cell': {},\n", + " 'collagen secreting cell': {'chondrocyte': {'hypertrophic chondrocyte': {},\n", + " 'columnar chondrocyte': {},\n", + " 'tracheobronchial chondrocyte': {},\n", + " 'growth plate cartilage chondrocyte': {},\n", + " 'articular chondrocyte': {'periarticular chondrocyte': {},\n", + " 'articular chondrocyte of knee joint': {}}}},\n", + " 'leptomeningeal cell': {}},\n", + " 'stromal cell of ovary': {'luteal cell': {'small luteal cell': {},\n", + " 'large luteal cell': {}},\n", + " 'theca cell': {},\n", + " 'interstitial cell of ovary': {},\n", + " 'hilus cell of ovary': {},\n", + " 'stromal cell of ovarian cortex': {},\n", + " 'stromal cell of ovarian medulla': {}},\n", + " 'stromal cell of endometrium': {},\n", + " 'type B synovial cell': {},\n", + " 'stromal cell of pancreas': {},\n", + " 'prostate stromal cell': {},\n", + " 'stromal cell of lamina propria of large intestine': {'stromal cell of lamina propria of vermiform appendix': {},\n", + " 'stromal cell of lamina propria of colon': {},\n", + " 'stromal cell of anorectum lamina propria': {}},\n", + " 'stromal cell of lamina propria of small intestine': {},\n", + " 'stromal cell of bone marrow': {},\n", + " 'decidual cell': {},\n", + " 'stromal cell of thymus': {'interstitial cell of thymus': {}}},\n", + " 'pericyte': {'mesangial cell': {'extraglomerular mesangial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'central nervous system pericyte': {'brain pericyte': {}},\n", + " 'lung pericyte': {},\n", + " 'renal interstitial pericyte': {'extraglomerular mesangial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'placental pericyte': {'decidual pericyte': {}}},\n", + " 'dental pulp cell': {'odontoblast': {'non-terminally differentiated odontoblast': {},\n", + " 'terminally differentiated odontoblast': {}},\n", + " 'dental pulp stem cell': {}},\n", + " 'adipose dendritic cell': {'SIRPa-positive adipose dendritic cell': {},\n", + " 'SIRPa-negative adipose dendritic cell': {}},\n", + " 'adventitial cell': {'fibroblast of tunica adventitia of artery': {'fibroblast of the aortic adventitia': {}},\n", + " 'ureter adventitial cell': {'fibrocyte of adventitia of ureter': {}}},\n", + " 'nucleus pulposus cell of intervertebral disc': {},\n", + " 'perineurial cell': {},\n", + " 'annulus pulposus cell': {},\n", + " 'telocyte': {},\n", + " 'adipose microvascular endothelial cell': {},\n", + " 'lung megakaryocyte': {},\n", + " 'lung interstitial macrophage': {}},\n", + " 'mammary gland epithelial cell': {'myoepithelial cell of mammary gland': {'myoepithelial cell of lactiferous alveolus': {},\n", + " 'myoepithelial cell of lactiferous duct': {},\n", + " 'myoepithelial cell of acinus of lactiferous gland': {}},\n", + " 'luminal epithelial cell of mammary gland': {'luminal cell of acinus of lactiferous gland': {},\n", + " 'luminal cell of lactiferous duct': {'luminal cell of lactiferous terminal ductal lobular unit': {}}},\n", + " 'mammary gland glandular cell': {'mammary alveolar cell': {}}},\n", + " 'cardiocyte': {'cardiac muscle myoblast': {},\n", + " 'cardiac muscle cell': {'cardiac muscle cell (sensu Arthopoda)': {},\n", + " 'specialized cardiac myocyte': {'Purkinje myocyte': {'Purkinje myocyte of interventricular septum': {},\n", + " 'Purkinje myocyte of atrioventricular node': {},\n", + " 'Purkinje myocyte of internodal tract': {},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}},\n", + " 'nodal myocyte': {'myocyte of sinoatrial node': {'cardiac pacemaker cell of sinoatrial node': {},\n", + " 'transitional myocyte of sinoatrial node': {}},\n", + " 'myocyte of atrioventricular node': {'Purkinje myocyte of atrioventricular node': {}}},\n", + " 'transitional myocyte': {'transitional myocyte of interatrial septum': {},\n", + " 'transitional myocyte of interventricular septum': {},\n", + " 'transitional myocyte of sinoatrial node': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}}},\n", + " 'myocardial endocrine cell': {'myocardial endocrine cell of atrium': {},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'myocardial endocrine cell of interventricular septum': {}},\n", + " 'internodal tract myocyte': {'myocyte of anterior internodal tract': {},\n", + " 'myocyte of atrial branch of anterior internodal tract': {},\n", + " 'myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'myocyte of middle internodal tract': {},\n", + " 'myocyte of posterior internodal tract': {},\n", + " 'transitional myocyte of internodal tract': {'transitional myocyte of atrial branch of anterior internodal tract': {},\n", + " 'transitional myocyte of anterior internodal tract': {},\n", + " 'transitional myocyte of atrial septal branch of anterior internodal tract': {},\n", + " 'transitional myocyte of middle internodal tract': {},\n", + " 'transitional myocyte of posterior internodal tract': {}},\n", + " 'Purkinje myocyte of internodal tract': {}}},\n", + " 'regular cardiac myocyte': {'regular interventricular cardiac myocyte': {},\n", + " 'regular atrial cardiac myocyte': {},\n", + " 'regular interatrial cardiac myocyte': {},\n", + " 'regular ventricular cardiac myocyte': {}},\n", + " 'fetal cardiomyocyte': {},\n", + " 'ventricular cardiac muscle cell': {'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}}},\n", + " 'fibroblast of cardiac tissue': {'cardiac ventricle fibroblast': {},\n", + " 'cardiac atrium fibroblast': {}},\n", + " 'smooth muscle cell of the coronary artery': {},\n", + " 'endocardial cushion cell': {},\n", + " 'cardiac endothelial cell': {'endocardial cell': {},\n", + " 'cardiac blood vessel endothelial cell': {'endothelial cell of coronary artery': {}},\n", + " 'valve endothelial cell': {}},\n", + " 'cardiac glial cell': {},\n", + " 'mesothelial cell of epicardium': {},\n", + " 'epicardial adipocyte': {'adipocyte of epicardial fat of right ventricle': {},\n", + " 'adipocyte of epicardial fat of left ventricle': {}}},\n", + " 'epithelial cell of cervix': {'uterine cervix squamous cell': {},\n", + " 'uterine cervix glandular cell': {}},\n", + " 'epithelial cell of amnion': {},\n", + " 'embryonic blood vessel endothelial progenitor cell': {},\n", + " 'hair follicle cell': {'hair follicle melanocyte': {},\n", + " 'inner root sheath cell': {},\n", + " 'outer root sheath cell': {},\n", + " 'hair germinal matrix cell': {},\n", + " 'hair follicular keratinocyte': {'keratinized cell of hair follicle': {}}},\n", + " 'ionocyte': {'pulmonary ionocyte': {}},\n", + " 'mesenchymal cell': {'mesenchyme condensation cell': {},\n", + " 'dental papilla cell': {},\n", + " 'cardiac mesenchymal cell': {'endocardial cushion cell': {}},\n", + " 'fibro/adipogenic progenitor cell': {}},\n", + " 'mural cell': {'pericyte': {'mesangial cell': {'extraglomerular mesangial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'central nervous system pericyte': {'brain pericyte': {}},\n", + " 'lung pericyte': {},\n", + " 'renal interstitial pericyte': {'extraglomerular mesangial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'placental pericyte': {'decidual pericyte': {}}},\n", + " 'microcirculation associated smooth muscle cell': {'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}}},\n", + " 'inflammatory cell': {},\n", + " 'larval midgut cell': {},\n", + " 'salivary gland cell': {},\n", + " 'epithelial cell of urethra': {'epithelial cell of prostatic urethra': {'hillock cell of prostatic urethral epithelium': {}},\n", + " 'hillock cell of urethral epithelium': {'hillock cell of prostatic urethral epithelium': {}},\n", + " 'urethra urothelial cell': {},\n", + " 'ovarian microvascular endothelial cell': {},\n", + " 'club-like cell of the urethral epithelium': {}},\n", + " 'epithelial cell of gallbladder': {'gallbladder glandular cell': {}},\n", + " 'conjunctival epithelial cell': {'conjunctiva goblet cell': {}},\n", + " 'epithelial cell of lacrimal canaliculus': {},\n", + " 'epithelial cell of external acoustic meatus': {},\n", + " 'epithelial cell of viscerocranial mucosa': {'nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa': {}},\n", + " 'kidney cell': {'kidney epithelial cell': {'interrenal epithelial cell': {},\n", + " 'renal cortical epithelial cell': {'kidney corpuscule cell': {'glomerular cell': {'glomerular endothelial cell': {'glomerular capillary endothelial cell': {}},\n", + " 'kidney glomerular epithelial cell': {'epithelial cell of glomerular capsule': {'podocyte': {'mesonephric podocyte': {},\n", + " 'metanephric podocyte': {},\n", + " 'pronephric podocyte': {}},\n", + " 'parietal epithelial cell': {}},\n", + " 'glomerular capillary endothelial cell': {}},\n", + " 'glomerular mesangial cell': {}},\n", + " 'kidney afferent arteriole cell': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {}},\n", + " 'kidney efferent arteriole cell': {'kidney efferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}}},\n", + " 'kidney cortex tubule cell': {'epithelial cell of distal tubule': {'kidney distal convoluted tubule epithelial cell': {'epithelial cell of early distal convoluted tubule': {},\n", + " 'epithelial cell of late distal convoluted tubule': {}},\n", + " 'macula densa epithelial cell': {},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}},\n", + " 'kidney connecting tubule epithelial cell': {'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}}},\n", + " 'kidney cortex interstitial cell': {'renal cortical fibroblast': {}},\n", + " 'kidney cortex collecting duct principal cell': {},\n", + " 'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney blood vessel cell': {'kidney arterial blood vessel cell': {'kidney afferent arteriole cell': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {}},\n", + " 'kidney efferent arteriole cell': {'kidney efferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney cortex artery cell': {'arcuate artery cell': {'arcuate artery endothelial cell': {},\n", + " 'arcuate artery smooth muscle cell': {}},\n", + " 'interlobular artery cell': {'interlobulary artery endothelial cell': {'kidney afferent arteriole endothelial cell': {}},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}}},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}}},\n", + " 'kidney capillary endothelial cell': {'glomerular capillary endothelial cell': {},\n", + " 'peritubular capillary endothelial cell': {'kidney outer medulla peritubular capillary cell': {},\n", + " 'kidney cortex peritubular capillary cell': {}},\n", + " 'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}}},\n", + " 'kidney venous blood vessel cell': {'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}},\n", + " 'kidney cortex vein cell': {'arcuate vein cell': {'arcuate vein endothelial cell': {},\n", + " 'arcuate vein smooth muscle cell': {}},\n", + " 'interlobular vein cell': {'interlobulary vein endothelial cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}}}},\n", + " 'renal principal cell': {'kidney collecting duct principal cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney papillary duct principal cell': {}},\n", + " 'kidney connecting tubule principal cell': {}},\n", + " 'epithelial cell of nephron': {'renal intercalated cell': {'renal beta-intercalated cell': {'kidney collecting duct beta-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}},\n", + " 'renal alpha-intercalated cell': {'kidney collecting duct alpha-intercalated cell': {},\n", + " 'kidney connecting tubule alpha-intercalated cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}},\n", + " 'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}},\n", + " 'mesonephric nephron tubule epithelial cell': {},\n", + " 'pronephric nephron tubule epithelial cell': {},\n", + " 'metanephric nephron tubule epithelial cell': {},\n", + " 'kidney collecting duct epithelial cell': {'kidney collecting duct principal cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney papillary duct principal cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}}},\n", + " 'nephron tubule epithelial cell': {'epithelial cell of distal tubule': {'kidney distal convoluted tubule epithelial cell': {'epithelial cell of early distal convoluted tubule': {},\n", + " 'epithelial cell of late distal convoluted tubule': {}},\n", + " 'macula densa epithelial cell': {},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}},\n", + " 'kidney connecting tubule epithelial cell': {'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}},\n", + " 'kidney loop of Henle epithelial cell': {'epithelial cell of intermediate tubule': {'kidney loop of Henle thin descending limb epithelial cell': {'kidney loop of Henle short descending thin limb epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb outer medulla epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb inner medulla epithelial cell': {}}},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle descending limb epithelial cell': {'kidney proximal straight tubule epithelial cell': {},\n", + " 'kidney loop of Henle thin descending limb epithelial cell': {'kidney loop of Henle short descending thin limb epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb outer medulla epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb inner medulla epithelial cell': {}}}}},\n", + " 'kidney corpuscule cell': {'glomerular cell': {'glomerular endothelial cell': {'glomerular capillary endothelial cell': {}},\n", + " 'kidney glomerular epithelial cell': {'epithelial cell of glomerular capsule': {'podocyte': {'mesonephric podocyte': {},\n", + " 'metanephric podocyte': {},\n", + " 'pronephric podocyte': {}},\n", + " 'parietal epithelial cell': {}},\n", + " 'glomerular capillary endothelial cell': {}},\n", + " 'glomerular mesangial cell': {}},\n", + " 'kidney afferent arteriole cell': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {}},\n", + " 'kidney efferent arteriole cell': {'kidney efferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}}},\n", + " 'kidney cortex tubule cell': {'epithelial cell of distal tubule': {'kidney distal convoluted tubule epithelial cell': {'epithelial cell of early distal convoluted tubule': {},\n", + " 'epithelial cell of late distal convoluted tubule': {}},\n", + " 'macula densa epithelial cell': {},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}},\n", + " 'kidney connecting tubule epithelial cell': {'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}}},\n", + " 'kidney connecting tubule principal cell': {}},\n", + " 'kidney pelvis urothelial cell': {}},\n", + " 'kidney cortical cell': {'renal cortical epithelial cell': {'kidney corpuscule cell': {'glomerular cell': {'glomerular endothelial cell': {'glomerular capillary endothelial cell': {}},\n", + " 'kidney glomerular epithelial cell': {'epithelial cell of glomerular capsule': {'podocyte': {'mesonephric podocyte': {},\n", + " 'metanephric podocyte': {},\n", + " 'pronephric podocyte': {}},\n", + " 'parietal epithelial cell': {}},\n", + " 'glomerular capillary endothelial cell': {}},\n", + " 'glomerular mesangial cell': {}},\n", + " 'kidney afferent arteriole cell': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {}},\n", + " 'kidney efferent arteriole cell': {'kidney efferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}}},\n", + " 'kidney cortex tubule cell': {'epithelial cell of distal tubule': {'kidney distal convoluted tubule epithelial cell': {'epithelial cell of early distal convoluted tubule': {},\n", + " 'epithelial cell of late distal convoluted tubule': {}},\n", + " 'macula densa epithelial cell': {},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}},\n", + " 'kidney connecting tubule epithelial cell': {'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}}},\n", + " 'kidney cortex interstitial cell': {'renal cortical fibroblast': {}},\n", + " 'kidney cortex collecting duct principal cell': {},\n", + " 'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney blood vessel cell': {'kidney arterial blood vessel cell': {'kidney afferent arteriole cell': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {}},\n", + " 'kidney efferent arteriole cell': {'kidney efferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney cortex artery cell': {'arcuate artery cell': {'arcuate artery endothelial cell': {},\n", + " 'arcuate artery smooth muscle cell': {}},\n", + " 'interlobular artery cell': {'interlobulary artery endothelial cell': {'kidney afferent arteriole endothelial cell': {}},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}}},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}}},\n", + " 'kidney capillary endothelial cell': {'glomerular capillary endothelial cell': {},\n", + " 'peritubular capillary endothelial cell': {'kidney outer medulla peritubular capillary cell': {},\n", + " 'kidney cortex peritubular capillary cell': {}},\n", + " 'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}}},\n", + " 'kidney venous blood vessel cell': {'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}},\n", + " 'kidney cortex vein cell': {'arcuate vein cell': {'arcuate vein endothelial cell': {},\n", + " 'arcuate vein smooth muscle cell': {}},\n", + " 'interlobular vein cell': {'interlobulary vein endothelial cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}}}},\n", + " 'nephrogenic zone cell': {},\n", + " 'kidney cortex collecting duct epithelial cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}}},\n", + " 'inner renal cortex cell': {},\n", + " 'juxtaglomerular complex cell': {'kidney granular cell': {},\n", + " 'extraglomerular mesangial cell': {},\n", + " 'macula densa epithelial cell': {}}},\n", + " 'kidney interstitial cell': {'kidney nerve cell': {},\n", + " 'kidney cortex interstitial cell': {'renal cortical fibroblast': {}},\n", + " 'kidney medulla interstitial cell': {'kidney inner medulla interstitial cell': {},\n", + " 'kidney outer medulla interstitial cell': {},\n", + " 'renal medullary fibroblast': {}},\n", + " 'kidney interstitial myofibroblast': {},\n", + " 'kidney interstitial fibroblast': {'renal medullary fibroblast': {},\n", + " 'renal cortical fibroblast': {}},\n", + " 'kidney interstitial fibrocyte': {},\n", + " 'kidney interstitial alternatively activated macrophage': {},\n", + " 'kidney interstitial inflammatory macrophage': {},\n", + " 'kidney interstitial suppressor macrophage': {},\n", + " 'kidney resident macrophage': {},\n", + " 'kidney resident dendritic cell': {},\n", + " 'renal interstitial pericyte': {'extraglomerular mesangial cell': {},\n", + " 'glomerular mesangial cell': {}}},\n", + " 'kidney medulla cell': {'kidney medulla collecting duct epithelial cell': {},\n", + " 'kidney outer medulla cell': {'kidney outer medulla collecting duct epithelial cell': {'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct intercalated cell': {}},\n", + " 'kidney outer medulla interstitial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle thin descending limb epithelial cell': {'kidney loop of Henle short descending thin limb epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb outer medulla epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb inner medulla epithelial cell': {}},\n", + " 'kidney outer medulla peritubular capillary cell': {},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}},\n", + " 'kidney inner medulla cell': {'kidney inner medulla collecting duct epithelial cell': {'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {}},\n", + " 'papillary tips cell': {},\n", + " 'kidney inner medulla interstitial cell': {},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {},\n", + " 'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}}},\n", + " 'kidney medulla interstitial cell': {'kidney inner medulla interstitial cell': {},\n", + " 'kidney outer medulla interstitial cell': {},\n", + " 'renal medullary fibroblast': {}},\n", + " 'kidney blood vessel cell': {'kidney arterial blood vessel cell': {'kidney afferent arteriole cell': {'kidney afferent arteriole endothelial cell': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {}},\n", + " 'kidney efferent arteriole cell': {'kidney efferent arteriole endothelial cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney cortex artery cell': {'arcuate artery cell': {'arcuate artery endothelial cell': {},\n", + " 'arcuate artery smooth muscle cell': {}},\n", + " 'interlobular artery cell': {'interlobulary artery endothelial cell': {'kidney afferent arteriole endothelial cell': {}},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}}},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}}},\n", + " 'kidney capillary endothelial cell': {'glomerular capillary endothelial cell': {},\n", + " 'peritubular capillary endothelial cell': {'kidney outer medulla peritubular capillary cell': {},\n", + " 'kidney cortex peritubular capillary cell': {}},\n", + " 'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}}},\n", + " 'kidney venous blood vessel cell': {'vasa recta cell': {'inner renal medulla vasa recta cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'inner medulla vasa recta descending limb cell': {}},\n", + " 'outer renal medulla vasa recta cell': {'outer medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}},\n", + " 'vasa recta ascending limb cell': {'inner medulla vasa recta ascending limb cell': {},\n", + " 'outer medulla vasa recta ascending limb cell': {}},\n", + " 'vasa recta descending limb cell': {'inner medulla vasa recta descending limb cell': {},\n", + " 'outer medulla vasa recta descending limb cell': {}}},\n", + " 'kidney cortex vein cell': {'arcuate vein cell': {'arcuate vein endothelial cell': {},\n", + " 'arcuate vein smooth muscle cell': {}},\n", + " 'interlobular vein cell': {'interlobulary vein endothelial cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}}},\n", + " 'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}}},\n", + " 'kidney pelvis cell': {'papillary tips cell': {},\n", + " 'kidney pelvis smooth muscle cell': {},\n", + " 'kidney pelvis urothelial cell': {}},\n", + " 'kidney tubule cell': {'mesonephric nephron tubule epithelial cell': {},\n", + " 'pronephric nephron tubule epithelial cell': {},\n", + " 'metanephric nephron tubule epithelial cell': {},\n", + " 'nephron tubule epithelial cell': {'epithelial cell of distal tubule': {'kidney distal convoluted tubule epithelial cell': {'epithelial cell of early distal convoluted tubule': {},\n", + " 'epithelial cell of late distal convoluted tubule': {}},\n", + " 'macula densa epithelial cell': {},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}},\n", + " 'kidney connecting tubule epithelial cell': {'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}},\n", + " 'kidney loop of Henle epithelial cell': {'epithelial cell of intermediate tubule': {'kidney loop of Henle thin descending limb epithelial cell': {'kidney loop of Henle short descending thin limb epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb outer medulla epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb inner medulla epithelial cell': {}}},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle descending limb epithelial cell': {'kidney proximal straight tubule epithelial cell': {},\n", + " 'kidney loop of Henle thin descending limb epithelial cell': {'kidney loop of Henle short descending thin limb epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb outer medulla epithelial cell': {},\n", + " 'kidney loop of Henle long descending thin limb inner medulla epithelial cell': {}}}}},\n", + " 'kidney cortex tubule cell': {'epithelial cell of distal tubule': {'kidney distal convoluted tubule epithelial cell': {'epithelial cell of early distal convoluted tubule': {},\n", + " 'epithelial cell of late distal convoluted tubule': {}},\n", + " 'macula densa epithelial cell': {},\n", + " 'kidney loop of Henle ascending limb epithelial cell': {'kidney loop of Henle thick ascending limb epithelial cell': {'kidney loop of Henle medullary thick ascending limb epithelial cell': {},\n", + " 'kidney loop of Henle cortical thick ascending limb epithelial cell': {}},\n", + " 'kidney loop of Henle thin ascending limb epithelial cell': {}}},\n", + " 'epithelial cell of proximal tubule': {'brush border cell of the proximal tubule': {},\n", + " 'kidney proximal convoluted tubule epithelial cell': {},\n", + " 'kidney proximal straight tubule epithelial cell': {},\n", + " 'epithelial cell of proximal tubule segment 1': {},\n", + " 'epithelial cell of proximal tubule segment 2': {},\n", + " 'epithelial cell of proximal tubule segment 3': {},\n", + " 'CD24-positive, CD-133-positive, vimentin-positive proximal tubular cell': {}},\n", + " 'kidney connecting tubule epithelial cell': {'kidney connecting tubule intercalated cell': {'kidney connecting tubule alpha-intercalated cell': {},\n", + " 'kidney connecting tubule beta-intercalated cell': {}}}},\n", + " 'kidney connecting tubule principal cell': {}},\n", + " 'kidney collecting duct cell': {'kidney collecting duct epithelial cell': {'kidney collecting duct principal cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney papillary duct principal cell': {}},\n", + " 'kidney collecting duct intercalated cell': {'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct intercalated cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {},\n", + " 'kidney papillary duct intercalated cell': {},\n", + " 'kidney collecting duct alpha-intercalated cell': {}}},\n", + " 'kidney medulla collecting duct epithelial cell': {},\n", + " 'kidney inner medulla collecting duct epithelial cell': {'kidney inner medulla collecting duct principal cell': {},\n", + " 'kidney inner medulla collecting duct intercalated cell': {}},\n", + " 'kidney outer medulla collecting duct epithelial cell': {'kidney outer medulla collecting duct principal cell': {},\n", + " 'kidney outer medulla collecting duct intercalated cell': {}},\n", + " 'kidney cortex collecting duct epithelial cell': {'kidney cortex collecting duct principal cell': {},\n", + " 'kidney cortex collecting duct intercalated cell': {'kidney collecting duct beta-intercalated cell': {}}},\n", + " 'kidney papillary duct principal epithelial cell': {'kidney papillary duct intercalated cell': {},\n", + " 'kidney papillary duct principal cell': {}}}},\n", + " 'somatic nurse-like cell': {}},\n", + " 'nephrocyte': {'pericardial nephrocyte': {},\n", + " 'garland cell': {},\n", + " 'disseminated nephrocyte': {}},\n", + " 'iridoblast': {},\n", + " 'xanthoblast': {},\n", + " 'leucoblast': {},\n", + " 'pigment erythroblast': {},\n", + " 'cyanoblast': {},\n", + " 'preameloblast': {},\n", + " 'precementoblast': {},\n", + " 'preodontoblast': {},\n", + " 'notochordal cell': {'notochordal sheath cell': {},\n", + " 'notochordal vacuole cell': {}},\n", + " 'prechondroblast': {},\n", + " 'alarm substance cell': {},\n", + " 'micropylar cell': {},\n", + " 'flask cell': {},\n", + " 'transit amplifying cell of colon': {},\n", + " 'transit amplifying cell of small intestine': {},\n", + " 'fetal hepatobiliary progenitor cell': {},\n", + " 'transit amplifying cell of appendix': {},\n", + " 'transit amplifying cell of anorectum': {},\n", + " 'progenitor cell of mammary luminal epithelium': {},\n", + " 'His-Purkinje system cell': {'atrioventricular bundle cell': {'transitional myocyte of atrioventricular bundle': {'transitional myocyte of left branch of atrioventricular bundle': {'transitional myocyte of anterior division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of septal division of left branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of posterior division of left branch of atrioventricular bundle': {}},\n", + " 'transitional myocyte of right branch of atrioventricular bundle': {},\n", + " 'transitional myocyte of atrial part of atrioventricular bundle': {},\n", + " 'transitional myocyte of ventricular part of atrioventricular bundle': {}},\n", + " 'Purkinje myocyte of atrioventricular bundle': {}},\n", + " 'myocardial endocrine cell of septal division of left branch of atrioventricular bundle': {}},\n", + " 'collar cell': {},\n", + " 'neural progenitor cell': {'ganglion mother cell': {}},\n", + " 'CD25+ mast cell': {},\n", + " 'cnidocyte': {},\n", + " 'tracheobronchial serous cell': {'serous cell of epithelium of trachea': {},\n", + " 'serous cell of epithelium of bronchus': {},\n", + " 'serous cell of epithelium of terminal bronchiole': {},\n", + " 'serous cell of epithelium of lobular bronchiole': {},\n", + " 'serous secreting cell of bronchus submucosal gland': {}},\n", + " 'cardiac valve cell': {'valve interstitial cell': {},\n", + " 'valve endothelial cell': {}},\n", + " 'Malpighian tubule stellate cell': {},\n", + " 'lung ciliated cell': {},\n", + " 'lung secretory cell': {'type II pneumocyte': {},\n", + " 'lung goblet cell': {'goblet cell of epithelium of lobar bronchus': {}},\n", + " 'lung neuroendocrine cell': {'neuroendocrine cell of epithelium of lobar bronchus': {}},\n", + " 'serous cell of epithelium of terminal bronchiole': {},\n", + " 'serous cell of epithelium of lobular bronchiole': {}},\n", + " 'lower urinary tract cell': {'bladder cell': {'smooth muscle cell of bladder': {},\n", + " 'bladder urothelial cell': {'urothelial cell of trigone of urinary bladder': {}},\n", + " 'bladder microvascular endothelial cell': {}},\n", + " 'urethra cell': {'epithelial cell of urethra': {'epithelial cell of prostatic urethra': {'hillock cell of prostatic urethral epithelium': {}},\n", + " 'hillock cell of urethral epithelium': {'hillock cell of prostatic urethral epithelium': {}},\n", + " 'urethra urothelial cell': {},\n", + " 'ovarian microvascular endothelial cell': {},\n", + " 'club-like cell of the urethral epithelium': {}}}},\n", + " 'ureteral cell': {'ureter urothelial cell': {},\n", + " 'ureter adventitial cell': {'fibrocyte of adventitia of ureter': {}},\n", + " 'ureter smooth muscle cell': {}},\n", + " 'sebaceous gland cell': {'sebum secreting cell': {'acinar cell of sebaceous gland': {}}},\n", + " 'cardiac septum cell': {'transitional myocyte of interatrial septum': {},\n", + " 'transitional myocyte of interventricular septum': {},\n", + " 'Purkinje myocyte of interventricular septum': {},\n", + " 'myocyte of atrioventricular node': {'Purkinje myocyte of atrioventricular node': {}},\n", + " 'myocardial endocrine cell of interventricular septum': {}},\n", + " 'posterior lateral line neuromast supporting cell': {},\n", + " 'germline-derived nurse cell': {'invertebrate nurse cell': {}},\n", + " 'BEST4+ intestinal epithelial cell, human': {}}},\n", + " 'structural cell': {'scleral cell': {}, 'choroidal cell of the eye': {}},\n", + " 'stuff accumulating cell': {'fat cell': {'white fat cell': {},\n", + " 'brown fat cell': {},\n", + " 'beige adipocyte': {},\n", + " 'neural crest derived fat cell': {},\n", + " 'subcutaneous fat cell': {},\n", + " 'adipocyte of omentum tissue': {},\n", + " 'perirenal adipocyte': {},\n", + " 'adipocyte of breast': {},\n", + " 'epicardial adipocyte': {'adipocyte of epicardial fat of right ventricle': {},\n", + " 'adipocyte of epicardial fat of left ventricle': {}}},\n", + " 'pigment cell': {'melanocyte': {'epithelial melanocyte': {'strial intermediate cell': {},\n", + " 'epidermal melanocyte': {'hair follicle melanocyte': {}}},\n", + " 'retinal melanocyte': {},\n", + " 'dark melanocyte': {},\n", + " 'light melanocyte': {},\n", + " 'melanocyte of eyelid': {},\n", + " 'melanocyte of skin': {'dermal melanocyte': {},\n", + " 'epidermal melanocyte': {'hair follicle melanocyte': {}},\n", + " 'melanocyte of skin of face': {},\n", + " 'melanocyte of foreskin': {}},\n", + " 'foreskin melanocyte': {'melanocyte of foreskin': {}},\n", + " 'choroidal melanocyte': {}},\n", + " 'visual pigment cell': {'visual pigment cell (sensu Vertebrata)': {},\n", + " 'visual pigment cell (sensu Nematoda and Protostomia)': {},\n", + " 'retinal pigment epithelial cell': {}},\n", + " 'pigment cell (sensu Nematoda and Protostomia)': {'visual pigment cell (sensu Nematoda and Protostomia)': {}},\n", + " 'pigment cell (sensu Vertebrata)': {'visual pigment cell (sensu Vertebrata)': {},\n", + " 'iris pigment epithelial cell': {}},\n", + " 'xanthophore cell': {},\n", + " 'iridophore': {},\n", + " 'leucophore': {},\n", + " 'erythrophore': {},\n", + " 'cyanophore': {}},\n", + " 'phagocyte': {'mature neutrophil': {'band form neutrophil': {},\n", + " 'segmented neutrophil of bone marrow': {}},\n", + " 'macrophage': {'elicited macrophage': {'suppressor macrophage': {'kidney interstitial suppressor macrophage': {}},\n", + " 'inflammatory macrophage': {'kidney interstitial inflammatory macrophage': {}},\n", + " 'alternatively activated macrophage': {'kidney interstitial alternatively activated macrophage': {}}},\n", + " 'tissue-resident macrophage': {'Kupffer cell': {},\n", + " 'peritoneal macrophage': {},\n", + " 'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'mesangial phagocyte': {},\n", + " 'thymic macrophage': {'thymic medullary macrophage': {},\n", + " 'thymic cortical macrophage': {}},\n", + " 'secondary lymphoid organ macrophage': {'lymph node macrophage': {'lymph node subcapsular sinus macrophage': {},\n", + " 'lymph node tingible body macrophage': {}},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}},\n", + " 'mucosa-associated lymphoid tissue macrophage': {'gut-associated lymphoid tissue macrophage': {'gastrointestinal tract (lamina propria) macrophage': {'gastrointestinal tract (lamina propria) macrophage of small intestine': {},\n", + " 'gastrointestinal tract (lamina propria) macrophage of large intestine': {}},\n", + " 'tonsillar macrophage': {},\n", + " \"Peyer's patch macrophage\": {}},\n", + " 'nasal and broncial associated lymphoid tissue macrophage': {}}},\n", + " 'central nervous system macrophage': {'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'meningeal macrophage': {},\n", + " 'choroid-plexus macrophage': {},\n", + " 'perivascular macrophage': {}},\n", + " 'melanophage': {},\n", + " 'pleural macrophage': {},\n", + " 'bone marrow macrophage': {},\n", + " 'adipose macrophage': {'F4/80-negative adipose macrophage': {},\n", + " 'F4/80-positive adipose macrophage': {}},\n", + " 'kidney resident macrophage': {},\n", + " 'lung interstitial macrophage': {}},\n", + " 'epithelioid macrophage': {},\n", + " 'appendix macrophage': {},\n", + " 'colon macrophage': {},\n", + " 'macrophage of medullary sinus of lymph node': {},\n", + " 'anorectum macrophage': {},\n", + " 'lung macrophage': {'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'lung interstitial macrophage': {}},\n", + " 'Hofbauer cell': {}},\n", + " 'phagocyte (sensu Vertebrata)': {'mononuclear phagocyte': {},\n", + " 'multinucleated phagocyte': {}},\n", + " 'phagocyte (sensu Nematoda and Protostomia)': {'coelomocyte': {},\n", + " 'pericardial nephrocyte': {},\n", + " 'garland cell': {}},\n", + " 'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'type A synovial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'uric acid accumulating cell': {},\n", + " 'crystallin accumulating cell': {'compound eye cone cell': {'posterior cone cell (sensu Endopterygota)': {},\n", + " 'anterior cone cell (sensu Endopterygota)': {},\n", + " 'equatorial cone cell (sensu Endopterygota)': {}},\n", + " 'vertebrate lens cell': {'lens epithelial cell': {'anterior lens cell': {}},\n", + " 'lens fiber cell': {'secondary lens fiber': {'non-nucleated secondary lens fiber': {},\n", + " 'nucleated secondary lens fiber': {}},\n", + " 'primary lens fiber': {}}}},\n", + " 'metal ion accumulating cell': {'copper accumulating cell': {},\n", + " 'iron accumulating cell': {}},\n", + " 'keratin accumulating cell': {'keratinizing barrier epithelial cell': {'keratinocyte': {'Merkel cell': {},\n", + " 'prickle cell': {},\n", + " 'basal cell of epidermis': {'limb basal cell of epidermis': {}},\n", + " 'granular cell of epidermis': {},\n", + " 'squamous cell of epidermis': {},\n", + " 'keratinocyte stem cell': {},\n", + " 'foreskin keratinocyte': {},\n", + " 'hair follicular keratinocyte': {'keratinized cell of hair follicle': {}},\n", + " 'suprabasal keratinocyte': {}},\n", + " 'keratinized cell of the oral mucosa': {},\n", + " 'keratinized squamous cell of esophagus': {},\n", + " 'keratinized epithelial cell of the anal canal': {}},\n", + " 'corneocyte': {}},\n", + " 'glycogen accumulating cell': {},\n", + " 'yolk cell': {},\n", + " 'fat body cell': {},\n", + " 'storage cell': {}},\n", + " 'oxygen accumulating cell': {'erythrocyte': {'nucleate erythrocyte': {},\n", + " 'enucleate erythrocyte': {'GlyA-positive erythrocyte': {},\n", + " 'Ly-76 high positive erythrocyte': {},\n", + " 'echinocyte': {},\n", + " 'fetal derived definitive erythrocyte': {}}}},\n", + " 'polyploid cell': {'invertebrate nurse cell': {},\n", + " 'polytene cell': {},\n", + " 'endopolyploid cell': {'hepatocyte': {'periportal region hepatocyte': {},\n", + " 'midzonal region hepatocyte': {},\n", + " 'centrilobular region hepatocyte': {}}}},\n", + " 'haploid cell': {'spermatid': {'early spermatid': {}, 'late spermatid': {}},\n", + " 'gamete': {'male gamete': {'sperm': {'Y chromosome-bearing sperm cell': {},\n", + " 'X chromosome-bearing sperm cell': {},\n", + " 'motile sperm cell': {'amoeboid sperm cell': {},\n", + " 'flagellated sperm cell': {}},\n", + " 'non-motile sperm cell': {}}},\n", + " 'female gamete': {'egg cell': {}}},\n", + " 'secondary spermatocyte': {}},\n", + " 'diploid cell': {},\n", + " 'mitogenic signaling cell': {'tip cell': {'malpighian tubule tip cell': {}},\n", + " 'distal tip cell (sensu Nematoda)': {}},\n", + " 'apoptosis fated cell': {},\n", + " 'defensive cell': {'phagocyte': {'mature neutrophil': {'band form neutrophil': {},\n", + " 'segmented neutrophil of bone marrow': {}},\n", + " 'macrophage': {'elicited macrophage': {'suppressor macrophage': {'kidney interstitial suppressor macrophage': {}},\n", + " 'inflammatory macrophage': {'kidney interstitial inflammatory macrophage': {}},\n", + " 'alternatively activated macrophage': {'kidney interstitial alternatively activated macrophage': {}}},\n", + " 'tissue-resident macrophage': {'Kupffer cell': {},\n", + " 'peritoneal macrophage': {},\n", + " 'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'mesangial phagocyte': {},\n", + " 'thymic macrophage': {'thymic medullary macrophage': {},\n", + " 'thymic cortical macrophage': {}},\n", + " 'secondary lymphoid organ macrophage': {'lymph node macrophage': {'lymph node subcapsular sinus macrophage': {},\n", + " 'lymph node tingible body macrophage': {}},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}},\n", + " 'mucosa-associated lymphoid tissue macrophage': {'gut-associated lymphoid tissue macrophage': {'gastrointestinal tract (lamina propria) macrophage': {'gastrointestinal tract (lamina propria) macrophage of small intestine': {},\n", + " 'gastrointestinal tract (lamina propria) macrophage of large intestine': {}},\n", + " 'tonsillar macrophage': {},\n", + " \"Peyer's patch macrophage\": {}},\n", + " 'nasal and broncial associated lymphoid tissue macrophage': {}}},\n", + " 'central nervous system macrophage': {'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'meningeal macrophage': {},\n", + " 'choroid-plexus macrophage': {},\n", + " 'perivascular macrophage': {}},\n", + " 'melanophage': {},\n", + " 'pleural macrophage': {},\n", + " 'bone marrow macrophage': {},\n", + " 'adipose macrophage': {'F4/80-negative adipose macrophage': {},\n", + " 'F4/80-positive adipose macrophage': {}},\n", + " 'kidney resident macrophage': {},\n", + " 'lung interstitial macrophage': {}},\n", + " 'epithelioid macrophage': {},\n", + " 'appendix macrophage': {},\n", + " 'colon macrophage': {},\n", + " 'macrophage of medullary sinus of lymph node': {},\n", + " 'anorectum macrophage': {},\n", + " 'lung macrophage': {'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'lung interstitial macrophage': {}},\n", + " 'Hofbauer cell': {}},\n", + " 'phagocyte (sensu Vertebrata)': {'mononuclear phagocyte': {},\n", + " 'multinucleated phagocyte': {}},\n", + " 'phagocyte (sensu Nematoda and Protostomia)': {'coelomocyte': {},\n", + " 'pericardial nephrocyte': {},\n", + " 'garland cell': {}},\n", + " 'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'type A synovial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'follicular dendritic cell': {\"Peyer's patch follicular dendritic cell\": {}},\n", + " 'M cell of gut': {'microfold cell of epithelium of small intestine': {'microfold cell of epithelium of intestinal villus': {'microfold cell of epithelium proper of duodenum': {}},\n", + " 'microfold cell of epithelium proper of small intestine': {},\n", + " 'microfold cell of epithelium proper of jejunum': {},\n", + " 'microfold cell of epithelium proper of ileum': {}},\n", + " 'microfold cell of epithelium proper of large intestine': {'microfold cell of epithelium proper of anorectum': {},\n", + " 'microfold cell of epithelium proper of appendix': {}}},\n", + " 'alarm substance cell': {}},\n", + " 'prokaryotic cell': {'endospore': {},\n", + " 'heterocyst': {},\n", + " 'actinomycete-type spore': {}},\n", + " 'transporting cell': {'M cell of gut': {'microfold cell of epithelium of small intestine': {'microfold cell of epithelium of intestinal villus': {'microfold cell of epithelium proper of duodenum': {}},\n", + " 'microfold cell of epithelium proper of small intestine': {},\n", + " 'microfold cell of epithelium proper of jejunum': {},\n", + " 'microfold cell of epithelium proper of ileum': {}},\n", + " 'microfold cell of epithelium proper of large intestine': {'microfold cell of epithelium proper of anorectum': {},\n", + " 'microfold cell of epithelium proper of appendix': {}}},\n", + " 'choroid plexus epithelial cell': {}},\n", + " 'photosynthetic cell': {},\n", + " 'supporting cell': {'Sertoli cell': {},\n", + " 'supporting cell (sensu Nematoda and Protostomia)': {'thecogen cell': {},\n", + " 'scolopale cell': {},\n", + " 'scolopidial ligament cell': {},\n", + " 'supporting cell (sensu Nematoda)': {'sheath cell (sensu Nematoda)': {},\n", + " 'socket cell (sensu Nematoda)': {}},\n", + " 'cap cell': {}},\n", + " 'ligament cell': {},\n", + " 'attachment cell': {'tendon cell': {}},\n", + " 'labyrinth supporting cell': {},\n", + " 'folliculostellate cell': {'folliculostellate cell of pars distalis of adenohypophysis': {}},\n", + " 'pericyte': {'mesangial cell': {'extraglomerular mesangial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'central nervous system pericyte': {'brain pericyte': {}},\n", + " 'lung pericyte': {},\n", + " 'renal interstitial pericyte': {'extraglomerular mesangial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'placental pericyte': {'decidual pericyte': {}}},\n", + " 'perijunctional fibroblast': {},\n", + " 'terminal Schwann cell': {},\n", + " 'paraganglia type 2 cell': {},\n", + " 'sustentacular cell': {'type II cell of carotid body': {},\n", + " 'type I taste bud cell': {}},\n", + " 'neuromast supporting cell': {'anterior lateral line neuromast supporting cell': {},\n", + " 'posterior lateral line neuromast supporting cell': {}},\n", + " 'olfactory epithelial supporting cell': {},\n", + " 'supporting cell of carotid body': {'type II cell of carotid body': {}},\n", + " 'adventitial cell': {'fibroblast of tunica adventitia of artery': {'fibroblast of the aortic adventitia': {}},\n", + " 'ureter adventitial cell': {'fibrocyte of adventitia of ureter': {}}},\n", + " 'auditory epithelial supporting cell': {'supporting cell of cochlea': {'Claudius cell': {},\n", + " 'Boettcher cell': {},\n", + " 'border cell of cochlea': {},\n", + " 'interdental cell of cochlea': {},\n", + " 'organ of Corti supporting cell': {'Hensen cell': {},\n", + " 'phalangeal cell': {\"Deiter's cell\": {}, 'inner phalangeal cell': {}},\n", + " 'pillar cell': {'internal pillar cell of cochlea': {},\n", + " 'external pillar cell of cochlea': {}}}},\n", + " 'supporting cell of vestibular epithelium': {'external supporting cell of vestibular epithelium': {},\n", + " 'external limiting cell of vestibular epithelium': {}}}},\n", + " 'nitrogen fixing cell': {'heterocyst': {}},\n", + " 'foam cell': {'macrophage derived foam cell': {},\n", + " 'smooth muscle cell derived foam cell': {}},\n", + " 'nucleate cell': {'single nucleate cell': {'mononuclear phagocyte': {},\n", + " 'nucleated thrombocyte': {},\n", + " 'thromboblast': {},\n", + " 'mononuclear cell': {'dendritic cell': {'plasmacytoid dendritic cell': {'thymic plasmacytoid dendritic cell': {},\n", + " 'CD11c-low plasmacytoid dendritic cell': {'immature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-negative plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-positive plasmacytoid dendritic cell': {}},\n", + " 'CD11c-negative plasmacytoid dendritic cell': {'immature CD11c-negative plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-negative plasmacytoid dendritic cell': {}},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {}},\n", + " 'conventional dendritic cell': {'Langerhans cell': {'CD1a-positive Langerhans cell': {'immature CD1a-positive Langerhans cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {}},\n", + " 'CD8_alpha-low Langerhans cell': {'immature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {}},\n", + " 'epidermal Langerhans cell': {}},\n", + " 'myeloid dendritic cell': {'myeloid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {},\n", + " 'CD1c-positive myeloid dendritic cell': {},\n", + " 'CD16-positive myeloid dendritic cell': {'immature CD16-positive myeloid dendritic cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'monocyte-derived dendritic cell': {}},\n", + " 'immature conventional dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'immature interstitial dendritic cell': {},\n", + " 'immature CD1a-positive Langerhans cell': {},\n", + " 'immature CD8_alpha-low Langerhans cell': {},\n", + " 'immature CD16-positive myeloid dendritic cell': {}},\n", + " 'mature conventional dendritic cell': {'mature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'thymic conventional dendritic cell': {'CD8alpha-positive thymic conventional dendritic cell': {},\n", + " 'CD8alpha-negative thymic conventional dendritic cell': {}},\n", + " 'CD8_alpha-negative CD11b-negative dendritic cell': {'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-negative dendritic cell': {}},\n", + " 'CD8_alpha-positive CD11b-negative dendritic cell': {'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {}},\n", + " 'CD103-positive dendritic cell': {'langerin-positive dermal dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {}},\n", + " 'adipose dendritic cell': {'SIRPa-positive adipose dendritic cell': {},\n", + " 'SIRPa-negative adipose dendritic cell': {}},\n", + " 'CD11b-positive dendritic cell': {'CD4-positive CD11b-positive dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {}},\n", + " 'dermal dendritic cell': {'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'langerin-positive dermal dendritic cell': {},\n", + " 'langerin-negative dermal dendritic cell': {},\n", + " 'CD14-positive dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD14-positive dermal dendritic cell': {}},\n", + " 'CD1a-positive dermal dendritic cell': {'immature CD1a-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}}},\n", + " 'interstitial dendritic cell': {'immature interstitial dendritic cell': {},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'kidney resident dendritic cell': {}},\n", + " 'Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell': {'liver CD103-negative dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {},\n", + " 'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}},\n", + " 'epidermal Langerhans cell': {},\n", + " 'small intestine serosal dendritic cell': {}},\n", + " 'langerin-positive lymph node dendritic cell': {'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {}},\n", + " 'langerin-negative, CD103-negative lymph node dendritic cell': {'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}}},\n", + " 'dendritic cell, human': {'myeloid dendritic cell, human': {},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'Axl+ dendritic cell, human': {}},\n", + " 'dendritic cell of appendix': {},\n", + " 'liver dendritic cell': {},\n", + " 'lung migratory dendritic cell': {}},\n", + " 'lymphocyte': {'T cell': {'alpha-beta T cell': {'immature alpha-beta T cell': {'double-positive, alpha-beta thymocyte': {'resting double-positive thymocyte': {},\n", + " 'double-positive blast': {},\n", + " 'CD69-positive double-positive thymocyte': {},\n", + " 'CD4-intermediate, CD8-positive double-positive thymocyte': {},\n", + " 'CD4-positive, CD8-intermediate double-positive thymocyte': {}},\n", + " 'CD4-positive, alpha-beta thymocyte': {'CD24-positive, CD4 single-positive thymocyte': {},\n", + " 'CD69-positive, CD4-positive single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta thymocyte': {'CD24-positive, CD8 single-positive thymocyte': {},\n", + " 'CD69-positive, CD8-positive single-positive thymocyte': {}},\n", + " 'immature NK T cell': {'immature NK T cell stage I': {},\n", + " 'immature NK T cell stage II': {},\n", + " 'immature NK T cell stage III': {},\n", + " 'immature NK T cell stage IV': {}}},\n", + " 'mature alpha-beta T cell': {'CD4-positive, alpha-beta T cell': {'CD4-positive helper T cell': {'T-helper 1 cell': {},\n", + " 'T-helper 2 cell': {},\n", + " 'T-helper 17 cell': {},\n", + " 'Tr1 cell': {},\n", + " 'T-helper 22 cell': {},\n", + " 'T follicular helper cell': {'germinal center T cell': {}},\n", + " 'T-helper 9 cell': {}},\n", + " 'CD4-positive, CD25-positive, alpha-beta regulatory T cell': {'induced T-regulatory cell': {},\n", + " 'natural T-regulatory cell': {},\n", + " 'CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell': {'naive CCR4-positive regulatory T cell': {},\n", + " 'memory CCR4-positive regulatory T cell': {},\n", + " 'activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human': {}},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}}},\n", + " 'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'naive thymus-derived CD4-positive, alpha-beta T cell': {},\n", + " 'activated CD4-positive, alpha-beta T cell': {'activated CD4-positive, alpha-beta T cell, human': {}},\n", + " 'CD4-positive, alpha-beta memory T cell': {'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD4-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD4-positive, alpha-beta T cell': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}},\n", + " 'lung resident memory CD4-positive, alpha-beta T cell': {}},\n", + " 'CD4-positive, alpha-beta cytotoxic T cell': {},\n", + " 'effector CD4-positive, alpha-beta T cell': {},\n", + " 'CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'T-helper 2 cell': {}},\n", + " 'mature CD4 single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta T cell': {'CD8-positive, alpha-beta cytotoxic T cell': {},\n", + " 'CD8-positive, alpha-beta regulatory T cell': {'CD8-positive, CD25-positive, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CD28-negative, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CXCR3-positive, alpha-beta regulatory T cell': {}},\n", + " 'naive thymus-derived CD8-positive, alpha-beta T cell': {},\n", + " 'activated CD8-positive, alpha-beta T cell': {'activated CD8-positive, alpha-beta T cell, human': {}},\n", + " 'CD8-positive, alpha-beta cytokine secreting effector T cell': {'Tc1 cell': {},\n", + " 'Tc2 cell': {},\n", + " 'Tc17 cell': {}},\n", + " 'CD8-positive, alpha-beta memory T cell': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD8-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD8-positive, alpha-beta T cell': {},\n", + " 'effector memory CD8-positive, alpha-beta T cell': {}},\n", + " 'lung resident memory CD8-positive, alpha-beta T cell': {'lung resident memory CD8-positive, CD103-positive, alpha-beta T cell': {}}},\n", + " 'effector CD8-positive, alpha-beta T cell': {},\n", + " 'CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'Tc2 cell': {}},\n", + " 'mature CD8 single-positive thymocyte': {}},\n", + " 'alpha-beta intraepithelial T cell': {'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'CD8-alpha-beta-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD4-negative, CD8-negative, alpha-beta intraepithelial T cell': {}},\n", + " 'mature NK T cell': {'type I NK T cell': {'CD4-positive type I NK T cell': {'activated CD4-positive type I NK T cell': {},\n", + " 'CD4-positive type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-positive type I NK T cell secreting interleukin-4': {}},\n", + " 'CD4-negative, CD8-negative type I NK T cell': {'activated CD4-negative, CD8-negative type I NK T cell': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interleukin-4': {}}},\n", + " 'type II NK T cell': {'activated type II NK T cell': {},\n", + " 'type II NK T cell secreting interferon-gamma': {},\n", + " 'type II NK T cell secreting interleukin-4': {}}},\n", + " 'mucosal invariant T cell': {},\n", + " 'effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {}}}},\n", + " 'gamma-delta T cell': {'immature gamma-delta T cell': {'CD25-positive, CD27-positive immature gamma-delta T cell': {}},\n", + " 'mature gamma-delta T cell': {'gamma-delta intraepithelial T cell': {'CD8-alpha alpha positive, gamma-delta intraepithelial T cell': {'Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell': {},\n", + " 'Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell': {}},\n", + " 'CD4-negative CD8-negative gamma-delta intraepithelial T cell': {}},\n", + " 'dendritic epidermal T cell': {},\n", + " 'CD27-positive gamma-delta T cell': {},\n", + " 'CD27-negative gamma-delta T cell': {}},\n", + " 'gamma-delta thymocyte': {'immature Vgamma2-positive thymocyte': {},\n", + " 'mature Vgamma2-positive thymocyte': {},\n", + " 'immature Vgamma2-negative thymocyte': {},\n", + " 'mature Vgamma2-negative thymocyte': {},\n", + " 'Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {'mature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {},\n", + " 'immature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {}},\n", + " 'Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {'immature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {},\n", + " 'mature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {}}}},\n", + " 'mature T cell': {'mature alpha-beta T cell': {'CD4-positive, alpha-beta T cell': {'CD4-positive helper T cell': {'T-helper 1 cell': {},\n", + " 'T-helper 2 cell': {},\n", + " 'T-helper 17 cell': {},\n", + " 'Tr1 cell': {},\n", + " 'T-helper 22 cell': {},\n", + " 'T follicular helper cell': {'germinal center T cell': {}},\n", + " 'T-helper 9 cell': {}},\n", + " 'CD4-positive, CD25-positive, alpha-beta regulatory T cell': {'induced T-regulatory cell': {},\n", + " 'natural T-regulatory cell': {},\n", + " 'CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell': {'naive CCR4-positive regulatory T cell': {},\n", + " 'memory CCR4-positive regulatory T cell': {},\n", + " 'activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human': {}},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}}},\n", + " 'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'naive thymus-derived CD4-positive, alpha-beta T cell': {},\n", + " 'activated CD4-positive, alpha-beta T cell': {'activated CD4-positive, alpha-beta T cell, human': {}},\n", + " 'CD4-positive, alpha-beta memory T cell': {'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD4-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD4-positive, alpha-beta T cell': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}},\n", + " 'lung resident memory CD4-positive, alpha-beta T cell': {}},\n", + " 'CD4-positive, alpha-beta cytotoxic T cell': {},\n", + " 'effector CD4-positive, alpha-beta T cell': {},\n", + " 'CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'T-helper 2 cell': {}},\n", + " 'mature CD4 single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta T cell': {'CD8-positive, alpha-beta cytotoxic T cell': {},\n", + " 'CD8-positive, alpha-beta regulatory T cell': {'CD8-positive, CD25-positive, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CD28-negative, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CXCR3-positive, alpha-beta regulatory T cell': {}},\n", + " 'naive thymus-derived CD8-positive, alpha-beta T cell': {},\n", + " 'activated CD8-positive, alpha-beta T cell': {'activated CD8-positive, alpha-beta T cell, human': {}},\n", + " 'CD8-positive, alpha-beta cytokine secreting effector T cell': {'Tc1 cell': {},\n", + " 'Tc2 cell': {},\n", + " 'Tc17 cell': {}},\n", + " 'CD8-positive, alpha-beta memory T cell': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD8-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD8-positive, alpha-beta T cell': {},\n", + " 'effector memory CD8-positive, alpha-beta T cell': {}},\n", + " 'lung resident memory CD8-positive, alpha-beta T cell': {'lung resident memory CD8-positive, CD103-positive, alpha-beta T cell': {}}},\n", + " 'effector CD8-positive, alpha-beta T cell': {},\n", + " 'CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'Tc2 cell': {}},\n", + " 'mature CD8 single-positive thymocyte': {}},\n", + " 'alpha-beta intraepithelial T cell': {'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'CD8-alpha-beta-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD4-negative, CD8-negative, alpha-beta intraepithelial T cell': {}},\n", + " 'mature NK T cell': {'type I NK T cell': {'CD4-positive type I NK T cell': {'activated CD4-positive type I NK T cell': {},\n", + " 'CD4-positive type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-positive type I NK T cell secreting interleukin-4': {}},\n", + " 'CD4-negative, CD8-negative type I NK T cell': {'activated CD4-negative, CD8-negative type I NK T cell': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interleukin-4': {}}},\n", + " 'type II NK T cell': {'activated type II NK T cell': {},\n", + " 'type II NK T cell secreting interferon-gamma': {},\n", + " 'type II NK T cell secreting interleukin-4': {}}},\n", + " 'mucosal invariant T cell': {},\n", + " 'effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {}}},\n", + " 'mature gamma-delta T cell': {'gamma-delta intraepithelial T cell': {'CD8-alpha alpha positive, gamma-delta intraepithelial T cell': {'Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell': {},\n", + " 'Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell': {}},\n", + " 'CD4-negative CD8-negative gamma-delta intraepithelial T cell': {}},\n", + " 'dendritic epidermal T cell': {},\n", + " 'CD27-positive gamma-delta T cell': {},\n", + " 'CD27-negative gamma-delta T cell': {}},\n", + " 'memory T cell': {'CD4-positive, alpha-beta memory T cell': {'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD4-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD4-positive, alpha-beta T cell': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}},\n", + " 'lung resident memory CD4-positive, alpha-beta T cell': {}},\n", + " 'CD8-positive, alpha-beta memory T cell': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD8-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD8-positive, alpha-beta T cell': {},\n", + " 'effector memory CD8-positive, alpha-beta T cell': {}},\n", + " 'lung resident memory CD8-positive, alpha-beta T cell': {'lung resident memory CD8-positive, CD103-positive, alpha-beta T cell': {}}}},\n", + " 'regulatory T cell': {'CD4-positive, CD25-positive, alpha-beta regulatory T cell': {'induced T-regulatory cell': {},\n", + " 'natural T-regulatory cell': {},\n", + " 'CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell': {'naive CCR4-positive regulatory T cell': {},\n", + " 'memory CCR4-positive regulatory T cell': {},\n", + " 'activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human': {}},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}}},\n", + " 'CD8-positive, alpha-beta regulatory T cell': {'CD8-positive, CD25-positive, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CD28-negative, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CXCR3-positive, alpha-beta regulatory T cell': {}},\n", + " 'Tr1 cell': {},\n", + " 'T follicular regulatory cell': {}},\n", + " 'naive T cell': {'naive thymus-derived CD4-positive, alpha-beta T cell': {},\n", + " 'naive thymus-derived CD8-positive, alpha-beta T cell': {},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}}},\n", + " 'effector T cell': {'cytotoxic T cell': {},\n", + " 'helper T cell': {},\n", + " 'effector CD4-positive, alpha-beta T cell': {},\n", + " 'effector CD8-positive, alpha-beta T cell': {},\n", + " 'innate effector T cell': {},\n", + " 'exhausted T cell': {}},\n", + " 'intraepithelial lymphocyte': {'alpha-beta intraepithelial T cell': {'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'CD8-alpha-beta-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD4-negative, CD8-negative, alpha-beta intraepithelial T cell': {}},\n", + " 'gamma-delta intraepithelial T cell': {'CD8-alpha alpha positive, gamma-delta intraepithelial T cell': {'Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell': {},\n", + " 'Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell': {}},\n", + " 'CD4-negative CD8-negative gamma-delta intraepithelial T cell': {}}},\n", + " \"small intestine Peyer's patch T cell\": {}},\n", + " 'immature T cell': {'immature alpha-beta T cell': {'double-positive, alpha-beta thymocyte': {'resting double-positive thymocyte': {},\n", + " 'double-positive blast': {},\n", + " 'CD69-positive double-positive thymocyte': {},\n", + " 'CD4-intermediate, CD8-positive double-positive thymocyte': {},\n", + " 'CD4-positive, CD8-intermediate double-positive thymocyte': {}},\n", + " 'CD4-positive, alpha-beta thymocyte': {'CD24-positive, CD4 single-positive thymocyte': {},\n", + " 'CD69-positive, CD4-positive single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta thymocyte': {'CD24-positive, CD8 single-positive thymocyte': {},\n", + " 'CD69-positive, CD8-positive single-positive thymocyte': {}},\n", + " 'immature NK T cell': {'immature NK T cell stage I': {},\n", + " 'immature NK T cell stage II': {},\n", + " 'immature NK T cell stage III': {},\n", + " 'immature NK T cell stage IV': {}}},\n", + " 'immature gamma-delta T cell': {'CD25-positive, CD27-positive immature gamma-delta T cell': {}},\n", + " 'thymocyte': {'immature single positive thymocyte': {},\n", + " 'double-positive, alpha-beta thymocyte': {'resting double-positive thymocyte': {},\n", + " 'double-positive blast': {},\n", + " 'CD69-positive double-positive thymocyte': {},\n", + " 'CD4-intermediate, CD8-positive double-positive thymocyte': {},\n", + " 'CD4-positive, CD8-intermediate double-positive thymocyte': {}},\n", + " 'CD4-positive, alpha-beta thymocyte': {'CD24-positive, CD4 single-positive thymocyte': {},\n", + " 'CD69-positive, CD4-positive single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta thymocyte': {'CD24-positive, CD8 single-positive thymocyte': {},\n", + " 'CD69-positive, CD8-positive single-positive thymocyte': {}},\n", + " 'CD25-positive, CD27-positive immature gamma-delta T cell': {},\n", + " 'fetal thymocyte': {'immature dendritic epithelial T cell precursor': {},\n", + " 'immature Vgamma2-positive fetal thymocyte': {},\n", + " 'mature dendritic epithelial T cell precursor': {},\n", + " 'mature Vgamma2-positive fetal thymocyte': {}},\n", + " 'double negative thymocyte': {'DN2 thymocyte': {'DN2a thymocyte': {},\n", + " 'DN2b thymocyte': {}},\n", + " 'DN3 thymocyte': {},\n", + " 'DN4 thymocyte': {},\n", + " 'gamma-delta thymocyte': {'immature Vgamma2-positive thymocyte': {},\n", + " 'mature Vgamma2-positive thymocyte': {},\n", + " 'immature Vgamma2-negative thymocyte': {},\n", + " 'mature Vgamma2-negative thymocyte': {},\n", + " 'Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {'mature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {},\n", + " 'immature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {}},\n", + " 'Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {'immature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {},\n", + " 'mature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {}}},\n", + " 'specified double negative thymocyte (Homo sapiens)': {},\n", + " 'committed double negative thymocyte (Homo sapiens)': {},\n", + " 'rearranging double negative thymocyte (Homo sapiens)': {},\n", + " 'double negative T regulatory cell': {}},\n", + " 'CD8aa(I) thymocyte': {},\n", + " 'CD8aa(II) thymocyte': {}}},\n", + " 'T cell of appendix': {},\n", + " 'T cell of medullary sinus of lymph node': {},\n", + " 'T cell of anorectum': {},\n", + " 'lymph node paracortex T cell': {}},\n", + " 'lymphocyte of B lineage': {'B cell': {'B cell, CD19-positive': {'mature B cell': {'memory B cell': {'unswitched memory B cell': {'CD38-negative unswitched memory B cell': {'B220-positive CD38-negative unswitched memory B cell': {'B220-low CD38-negative unswitched memory B cell': {}}},\n", + " 'CD38-positive unswitched memory B cell': {'B220-positive CD38-positive unswitched memory B cell': {'B220-low CD38-positive unswitched memory B cell': {}}}},\n", + " 'class switched memory B cell': {'IgE memory B cell': {},\n", + " 'IgA memory B cell': {},\n", + " 'IgG memory B cell': {'CD38-positive IgG memory B cell': {'IgD-positive CD38-positive IgG memory B cell': {},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {}},\n", + " 'CD38-negative IgG memory B cell': {}},\n", + " 'IgG-negative class switched memory B cell': {'CD38-negative IgG-negative class switched memory B cell': {'CD24-positive CD38-negative IgG-negative class switched memory B cell': {},\n", + " 'CD24-negative CD38-negative IgG-negative class switched memory B cell': {}},\n", + " 'CD38-positive IgG-negative class switched memory B cell': {'B220-positive CD38-positive IgG-negative class switched memory B cell': {'B220-low CD38-positive IgG-negative class switched memory B cell': {}}}}},\n", + " 'IgD-negative memory B cell': {'Bm5 B cell': {},\n", + " 'IgM memory B cell': {},\n", + " 'double negative memory B cell': {'IgG-positive double negative memory B cell': {},\n", + " 'IgG-negative double negative memory B cell': {}},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {},\n", + " 'CD38-negative IgG memory B cell': {}}},\n", + " 'naive B cell': {'CD38-positive naive B cell': {'B220-positive CD38-positive naive B cell': {'B220-low CD38-positive naive B cell': {}}},\n", + " 'CD38-negative naive B cell': {}},\n", + " 'B-1 B cell': {'B-1a B cell': {}, 'B-1b B cell': {}},\n", + " 'B-2 B cell': {'follicular B cell': {'Bm1 B cell': {},\n", + " 'Bm2 B cell': {}},\n", + " 'fraction F mature B cell': {'Bm1 B cell': {}},\n", + " \"Peyer's patch B cell\": {}},\n", + " 'germinal center B cell': {'Bm3-delta B cell': {},\n", + " \"Bm2' B cell\": {},\n", + " 'Bm3 B cell': {},\n", + " 'Bm4 B cell': {},\n", + " 'centrocyte': {},\n", + " 'centroblast': {},\n", + " 'tonsil germinal center B cell': {}},\n", + " 'marginal zone B cell of spleen': {},\n", + " 'Be cell': {'Be1 Cell': {}, 'Be2 cell': {}},\n", + " 'regulatory B cell': {},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}},\n", + " 'marginal zone B cell of lymph node': {}},\n", + " 'immature B cell': {'fraction E immature B cell': {},\n", + " 'CD38-negative immature B cell': {}},\n", + " 'precursor B cell': {'pre-B-II cell': {'small pre-B-II cell': {'CD22-positive, CD38-low small pre-B cell': {}},\n", + " 'large pre-B-II cell': {'preBCR-positive large pre-B-II cell': {'CD38-high pre-BCR positive cell': {}},\n", + " 'preBCR-negative large pre-B-II cell': {}}},\n", + " 'pre-B-I cell': {},\n", + " 'late pro-B cell': {},\n", + " \"fraction C' precursor B cell\": {},\n", + " 'fraction B/C precursor B cell': {'fraction B precursor B cell': {},\n", + " 'fraction C precursor B cell': {},\n", + " 'fraction D precursor B cell': {}}},\n", + " 'transitional stage B cell': {'T1 B cell': {},\n", + " 'T2 B cell': {},\n", + " 'T3 B cell': {}}},\n", + " 'B cell of appendix': {},\n", + " 'lymph node mantle zone B cell': {},\n", + " 'B cell of medullary sinus of lymph node': {},\n", + " 'B cell of anorectum': {},\n", + " 'monocytoid B cell': {}},\n", + " 'antibody secreting cell': {'plasma cell': {'long lived plasma cell': {'IgE plasma cell': {},\n", + " 'IgG plasma cell': {},\n", + " 'IgM plasma cell': {},\n", + " 'IgA plasma cell': {}},\n", + " 'short lived plasma cell': {'IgE short lived plasma cell': {},\n", + " 'IgA short lived plasma cell': {},\n", + " 'IgG short lived plasma cell': {},\n", + " 'IgM short lived plasma cell': {}},\n", + " 'plasma cell of appendix': {},\n", + " 'plasma cell of medullary sinus of lymph node': {}},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}}},\n", + " 'lymphocyte of B lineage, CD19-positive': {'B cell, CD19-positive': {'mature B cell': {'memory B cell': {'unswitched memory B cell': {'CD38-negative unswitched memory B cell': {'B220-positive CD38-negative unswitched memory B cell': {'B220-low CD38-negative unswitched memory B cell': {}}},\n", + " 'CD38-positive unswitched memory B cell': {'B220-positive CD38-positive unswitched memory B cell': {'B220-low CD38-positive unswitched memory B cell': {}}}},\n", + " 'class switched memory B cell': {'IgE memory B cell': {},\n", + " 'IgA memory B cell': {},\n", + " 'IgG memory B cell': {'CD38-positive IgG memory B cell': {'IgD-positive CD38-positive IgG memory B cell': {},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {}},\n", + " 'CD38-negative IgG memory B cell': {}},\n", + " 'IgG-negative class switched memory B cell': {'CD38-negative IgG-negative class switched memory B cell': {'CD24-positive CD38-negative IgG-negative class switched memory B cell': {},\n", + " 'CD24-negative CD38-negative IgG-negative class switched memory B cell': {}},\n", + " 'CD38-positive IgG-negative class switched memory B cell': {'B220-positive CD38-positive IgG-negative class switched memory B cell': {'B220-low CD38-positive IgG-negative class switched memory B cell': {}}}}},\n", + " 'IgD-negative memory B cell': {'Bm5 B cell': {},\n", + " 'IgM memory B cell': {},\n", + " 'double negative memory B cell': {'IgG-positive double negative memory B cell': {},\n", + " 'IgG-negative double negative memory B cell': {}},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {},\n", + " 'CD38-negative IgG memory B cell': {}}},\n", + " 'naive B cell': {'CD38-positive naive B cell': {'B220-positive CD38-positive naive B cell': {'B220-low CD38-positive naive B cell': {}}},\n", + " 'CD38-negative naive B cell': {}},\n", + " 'B-1 B cell': {'B-1a B cell': {}, 'B-1b B cell': {}},\n", + " 'B-2 B cell': {'follicular B cell': {'Bm1 B cell': {},\n", + " 'Bm2 B cell': {}},\n", + " 'fraction F mature B cell': {'Bm1 B cell': {}},\n", + " \"Peyer's patch B cell\": {}},\n", + " 'germinal center B cell': {'Bm3-delta B cell': {},\n", + " \"Bm2' B cell\": {},\n", + " 'Bm3 B cell': {},\n", + " 'Bm4 B cell': {},\n", + " 'centrocyte': {},\n", + " 'centroblast': {},\n", + " 'tonsil germinal center B cell': {}},\n", + " 'marginal zone B cell of spleen': {},\n", + " 'Be cell': {'Be1 Cell': {}, 'Be2 cell': {}},\n", + " 'regulatory B cell': {},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}},\n", + " 'marginal zone B cell of lymph node': {}},\n", + " 'immature B cell': {'fraction E immature B cell': {},\n", + " 'CD38-negative immature B cell': {}},\n", + " 'precursor B cell': {'pre-B-II cell': {'small pre-B-II cell': {'CD22-positive, CD38-low small pre-B cell': {}},\n", + " 'large pre-B-II cell': {'preBCR-positive large pre-B-II cell': {'CD38-high pre-BCR positive cell': {}},\n", + " 'preBCR-negative large pre-B-II cell': {}}},\n", + " 'pre-B-I cell': {},\n", + " 'late pro-B cell': {},\n", + " \"fraction C' precursor B cell\": {},\n", + " 'fraction B/C precursor B cell': {'fraction B precursor B cell': {},\n", + " 'fraction C precursor B cell': {},\n", + " 'fraction D precursor B cell': {}}},\n", + " 'transitional stage B cell': {'T1 B cell': {},\n", + " 'T2 B cell': {},\n", + " 'T3 B cell': {}}}},\n", + " 'B-lymphoblast': {}},\n", + " 'innate lymphoid cell': {'group 1 innate lymphoid cell': {'natural killer cell': {'immature natural killer cell': {'CD56-positive, CD161-positive immature natural killer cell, human': {},\n", + " 'CD56-negative, CD161-positive immature natural killer cell, human': {},\n", + " 'CD27-low, CD11b-low immature natural killer cell, mouse': {},\n", + " 'Dx5-negative, NK1.1-positive immature natural killer cell, mouse': {}},\n", + " 'mature natural killer cell': {'CD16-negative, CD56-bright natural killer cell, human': {},\n", + " 'CD16-positive, CD56-dim natural killer cell, human': {},\n", + " 'decidual natural killer cell, human': {},\n", + " 'CD27-high, CD11b-high natural killer cell, mouse': {},\n", + " 'CD27-low, CD11b-high natural killer cell, mouse': {},\n", + " 'CD27-high, CD11b-low natural killer cell, mouse': {},\n", + " 'NK1.1-positive natural killer cell, mouse': {'CD11b-positive, CD27-positive natural killer cell, mouse': {},\n", + " 'NKGA2-positive natural killer cell, mouse': {},\n", + " 'Ly49D-positive natural killer cell, mouse': {},\n", + " 'CD94-positive natural killer cell, mouse': {'CD94-positive Ly49CI-positive natural killer cell, mouse': {}},\n", + " 'Ly49CI-positive natural killer cell, mouse': {'CD94-positive Ly49CI-positive natural killer cell, mouse': {}},\n", + " 'Ly49H-positive natural killer cell, mouse': {},\n", + " 'Ly49D-negative natural killer cell, mouse': {},\n", + " 'Ly49CI-negative natural killer cell, mouse': {},\n", + " 'CD94-negative natural killer cell, mouse': {},\n", + " 'Ly49H-negative natural killer cell, mouse': {}}},\n", + " 'pre-natural killer cell': {},\n", + " 'CD94-negative, Ly49CI-negative natural killer cell, mouse': {},\n", + " 'hepatic pit cell': {}},\n", + " 'ILC1': {'ILC1, human': {}}},\n", + " 'group 2 innate lymphoid cell': {'group 2 innate lymphoid cell, human': {},\n", + " 'group 2 innate lymphoid cell, mouse': {}},\n", + " 'group 3 innate lymphoid cell': {'group 3 innate lymphoid cell, human': {'NKp44-positive group 3 innate lymphoid cell, human': {},\n", + " 'NKp44-negative group 3 innate lymphoid cell, human': {}},\n", + " 'lymphoid tissue–inducer cell': {}},\n", + " 'immature innate lymphoid cell': {'immature natural killer cell': {'CD56-positive, CD161-positive immature natural killer cell, human': {},\n", + " 'CD56-negative, CD161-positive immature natural killer cell, human': {},\n", + " 'CD27-low, CD11b-low immature natural killer cell, mouse': {},\n", + " 'Dx5-negative, NK1.1-positive immature natural killer cell, mouse': {}},\n", + " 'CD34-negative, CD117-positive innate lymphoid cell, human': {'CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human': {},\n", + " 'KLRG1-positive innate lymphoid cell, human': {}},\n", + " 'CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human': {'NKp46-positive innate lymphoid cell, human': {}}}},\n", + " 'natural helper lymphocyte': {},\n", + " \"Peyer's patch lymphocyte\": {\"Peyer's patch B cell\": {},\n", + " \"small intestine Peyer's patch T cell\": {}},\n", + " 'lymphocyte of large intestine lamina propria': {},\n", + " 'lymphocyte of small intestine lamina propria': {},\n", + " 'lymphoblast': {'B-lymphoblast': {}},\n", + " 'blood lymphocyte': {'peripheral blood lymphocyte': {}}},\n", + " 'monocyte': {'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'non-classical monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}},\n", + " 'CD14-low, CD16-positive monocyte': {}},\n", + " 'CD115-positive monocyte': {'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}},\n", + " 'CD14-positive monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'CD14-low, CD16-positive monocyte': {},\n", + " 'CD14-positive, CD16-positive monocyte': {'CD14-positive, CD16-low monocyte': {}}},\n", + " 'intermediate monocyte': {'CD14-positive, CD16-low monocyte': {},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}}},\n", + " 'mononuclear osteoclast': {'mononuclear odontoclast': {}},\n", + " 'mononuclear cell of bone marrow': {},\n", + " 'peripheral blood mononuclear cell': {'blood lymphocyte': {'peripheral blood lymphocyte': {}}},\n", + " 'mononuclear cell of umbilical cord': {}}},\n", + " 'multinucleate cell': {'binucleate cell': {'garland cell': {},\n", + " 'dikaryon': {}},\n", + " 'Caenorhabditis hypodermal cell': {},\n", + " 'syncytial epithelial cell': {},\n", + " 'syncytiotrophoblast cell': {},\n", + " 'heterokaryon': {'dikaryon': {}},\n", + " 'multinucleated giant cell': {},\n", + " 'multinuclear osteoclast': {'multinuclear odontoclast': {}},\n", + " 'multinucleated phagocyte': {},\n", + " 'myotube': {'skeletal muscle fiber': {'tongue muscle cell': {},\n", + " 'extrafusal muscle fiber': {'slow muscle cell': {'type I muscle cell': {}},\n", + " 'fast muscle cell': {'type II muscle cell': {'type IIa muscle cell': {},\n", + " 'type IIb muscle cell': {}},\n", + " 'white muscle cell': {'type IIb muscle cell': {}}},\n", + " 'red muscle cell': {'type I muscle cell': {},\n", + " 'type IIa muscle cell': {}},\n", + " 'intermediate muscle cell': {}},\n", + " 'intrafusal muscle fiber': {'nuclear chain fiber': {},\n", + " 'nuclear bag fiber': {'dynamic nuclear bag fiber': {},\n", + " 'static nuclear bag fiber': {}}},\n", + " 'embryonic skeletal muscle fiber': {},\n", + " 'fetal and neonatal skeletal muscle fiber': {}},\n", + " 'somatic muscle myotube': {'insect flight muscle cell': {}}},\n", + " 'obliquely striated somatic muscle cell': {}},\n", + " 'proerythroblast': {'CD34-negative, GlyA-negative proerythroblast': {},\n", + " 'Kit-low proerythroblast': {}},\n", + " 'nucleate erythrocyte': {},\n", + " 'leukocyte': {'professional antigen presenting cell': {'mature eosinophil': {},\n", + " 'macrophage': {'elicited macrophage': {'suppressor macrophage': {'kidney interstitial suppressor macrophage': {}},\n", + " 'inflammatory macrophage': {'kidney interstitial inflammatory macrophage': {}},\n", + " 'alternatively activated macrophage': {'kidney interstitial alternatively activated macrophage': {}}},\n", + " 'tissue-resident macrophage': {'Kupffer cell': {},\n", + " 'peritoneal macrophage': {},\n", + " 'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'mesangial phagocyte': {},\n", + " 'thymic macrophage': {'thymic medullary macrophage': {},\n", + " 'thymic cortical macrophage': {}},\n", + " 'secondary lymphoid organ macrophage': {'lymph node macrophage': {'lymph node subcapsular sinus macrophage': {},\n", + " 'lymph node tingible body macrophage': {}},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}},\n", + " 'mucosa-associated lymphoid tissue macrophage': {'gut-associated lymphoid tissue macrophage': {'gastrointestinal tract (lamina propria) macrophage': {'gastrointestinal tract (lamina propria) macrophage of small intestine': {},\n", + " 'gastrointestinal tract (lamina propria) macrophage of large intestine': {}},\n", + " 'tonsillar macrophage': {},\n", + " \"Peyer's patch macrophage\": {}},\n", + " 'nasal and broncial associated lymphoid tissue macrophage': {}}},\n", + " 'central nervous system macrophage': {'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'meningeal macrophage': {},\n", + " 'choroid-plexus macrophage': {},\n", + " 'perivascular macrophage': {}},\n", + " 'melanophage': {},\n", + " 'pleural macrophage': {},\n", + " 'bone marrow macrophage': {},\n", + " 'adipose macrophage': {'F4/80-negative adipose macrophage': {},\n", + " 'F4/80-positive adipose macrophage': {}},\n", + " 'kidney resident macrophage': {},\n", + " 'lung interstitial macrophage': {}},\n", + " 'epithelioid macrophage': {},\n", + " 'appendix macrophage': {},\n", + " 'colon macrophage': {},\n", + " 'macrophage of medullary sinus of lymph node': {},\n", + " 'anorectum macrophage': {},\n", + " 'lung macrophage': {'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'lung interstitial macrophage': {}},\n", + " 'Hofbauer cell': {}},\n", + " 'dendritic cell': {'plasmacytoid dendritic cell': {'thymic plasmacytoid dendritic cell': {},\n", + " 'CD11c-low plasmacytoid dendritic cell': {'immature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-negative plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-positive plasmacytoid dendritic cell': {}},\n", + " 'CD11c-negative plasmacytoid dendritic cell': {'immature CD11c-negative plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-negative plasmacytoid dendritic cell': {}},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {}},\n", + " 'conventional dendritic cell': {'Langerhans cell': {'CD1a-positive Langerhans cell': {'immature CD1a-positive Langerhans cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {}},\n", + " 'CD8_alpha-low Langerhans cell': {'immature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {}},\n", + " 'epidermal Langerhans cell': {}},\n", + " 'myeloid dendritic cell': {'myeloid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {},\n", + " 'CD1c-positive myeloid dendritic cell': {},\n", + " 'CD16-positive myeloid dendritic cell': {'immature CD16-positive myeloid dendritic cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'monocyte-derived dendritic cell': {}},\n", + " 'immature conventional dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'immature interstitial dendritic cell': {},\n", + " 'immature CD1a-positive Langerhans cell': {},\n", + " 'immature CD8_alpha-low Langerhans cell': {},\n", + " 'immature CD16-positive myeloid dendritic cell': {}},\n", + " 'mature conventional dendritic cell': {'mature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'thymic conventional dendritic cell': {'CD8alpha-positive thymic conventional dendritic cell': {},\n", + " 'CD8alpha-negative thymic conventional dendritic cell': {}},\n", + " 'CD8_alpha-negative CD11b-negative dendritic cell': {'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-negative dendritic cell': {}},\n", + " 'CD8_alpha-positive CD11b-negative dendritic cell': {'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {}},\n", + " 'CD103-positive dendritic cell': {'langerin-positive dermal dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {}},\n", + " 'adipose dendritic cell': {'SIRPa-positive adipose dendritic cell': {},\n", + " 'SIRPa-negative adipose dendritic cell': {}},\n", + " 'CD11b-positive dendritic cell': {'CD4-positive CD11b-positive dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {}},\n", + " 'dermal dendritic cell': {'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'langerin-positive dermal dendritic cell': {},\n", + " 'langerin-negative dermal dendritic cell': {},\n", + " 'CD14-positive dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD14-positive dermal dendritic cell': {}},\n", + " 'CD1a-positive dermal dendritic cell': {'immature CD1a-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}}},\n", + " 'interstitial dendritic cell': {'immature interstitial dendritic cell': {},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'kidney resident dendritic cell': {}},\n", + " 'Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell': {'liver CD103-negative dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {},\n", + " 'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}},\n", + " 'epidermal Langerhans cell': {},\n", + " 'small intestine serosal dendritic cell': {}},\n", + " 'langerin-positive lymph node dendritic cell': {'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {}},\n", + " 'langerin-negative, CD103-negative lymph node dendritic cell': {'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}}},\n", + " 'dendritic cell, human': {'myeloid dendritic cell, human': {},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'Axl+ dendritic cell, human': {}},\n", + " 'dendritic cell of appendix': {},\n", + " 'liver dendritic cell': {},\n", + " 'lung migratory dendritic cell': {}},\n", + " 'mature B cell': {'memory B cell': {'unswitched memory B cell': {'CD38-negative unswitched memory B cell': {'B220-positive CD38-negative unswitched memory B cell': {'B220-low CD38-negative unswitched memory B cell': {}}},\n", + " 'CD38-positive unswitched memory B cell': {'B220-positive CD38-positive unswitched memory B cell': {'B220-low CD38-positive unswitched memory B cell': {}}}},\n", + " 'class switched memory B cell': {'IgE memory B cell': {},\n", + " 'IgA memory B cell': {},\n", + " 'IgG memory B cell': {'CD38-positive IgG memory B cell': {'IgD-positive CD38-positive IgG memory B cell': {},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {}},\n", + " 'CD38-negative IgG memory B cell': {}},\n", + " 'IgG-negative class switched memory B cell': {'CD38-negative IgG-negative class switched memory B cell': {'CD24-positive CD38-negative IgG-negative class switched memory B cell': {},\n", + " 'CD24-negative CD38-negative IgG-negative class switched memory B cell': {}},\n", + " 'CD38-positive IgG-negative class switched memory B cell': {'B220-positive CD38-positive IgG-negative class switched memory B cell': {'B220-low CD38-positive IgG-negative class switched memory B cell': {}}}}},\n", + " 'IgD-negative memory B cell': {'Bm5 B cell': {},\n", + " 'IgM memory B cell': {},\n", + " 'double negative memory B cell': {'IgG-positive double negative memory B cell': {},\n", + " 'IgG-negative double negative memory B cell': {}},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {},\n", + " 'CD38-negative IgG memory B cell': {}}},\n", + " 'naive B cell': {'CD38-positive naive B cell': {'B220-positive CD38-positive naive B cell': {'B220-low CD38-positive naive B cell': {}}},\n", + " 'CD38-negative naive B cell': {}},\n", + " 'B-1 B cell': {'B-1a B cell': {}, 'B-1b B cell': {}},\n", + " 'B-2 B cell': {'follicular B cell': {'Bm1 B cell': {}, 'Bm2 B cell': {}},\n", + " 'fraction F mature B cell': {'Bm1 B cell': {}},\n", + " \"Peyer's patch B cell\": {}},\n", + " 'germinal center B cell': {'Bm3-delta B cell': {},\n", + " \"Bm2' B cell\": {},\n", + " 'Bm3 B cell': {},\n", + " 'Bm4 B cell': {},\n", + " 'centrocyte': {},\n", + " 'centroblast': {},\n", + " 'tonsil germinal center B cell': {}},\n", + " 'marginal zone B cell of spleen': {},\n", + " 'Be cell': {'Be1 Cell': {}, 'Be2 cell': {}},\n", + " 'regulatory B cell': {},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}},\n", + " 'marginal zone B cell of lymph node': {}}},\n", + " 'myeloid leukocyte': {'osteoclast': {'odontoclast': {'multinuclear odontoclast': {},\n", + " 'mononuclear odontoclast': {}},\n", + " 'mononuclear osteoclast': {'mononuclear odontoclast': {}},\n", + " 'multinuclear osteoclast': {'multinuclear odontoclast': {}}},\n", + " 'granulocyte': {'basophil': {'mature basophil': {},\n", + " 'immature basophil': {'basophilic myelocyte': {},\n", + " 'basophilic metamyelocyte': {},\n", + " 'band form basophil': {}}},\n", + " 'eosinophil': {'mature eosinophil': {},\n", + " 'immature eosinophil': {'eosinophilic myelocyte': {},\n", + " 'eosinophilic metamyelocyte': {},\n", + " 'band form eosinophil': {'lung parenchyma resident eosinophil': {}}}},\n", + " 'neutrophil': {'mature neutrophil': {'band form neutrophil': {},\n", + " 'segmented neutrophil of bone marrow': {}},\n", + " 'immature neutrophil': {'neutrophilic myelocyte': {},\n", + " 'neutrophilic metamyelocyte': {}}}},\n", + " 'mast cell': {'connective tissue type mast cell': {},\n", + " 'mucosal type mast cell': {}},\n", + " 'macrophage': {'elicited macrophage': {'suppressor macrophage': {'kidney interstitial suppressor macrophage': {}},\n", + " 'inflammatory macrophage': {'kidney interstitial inflammatory macrophage': {}},\n", + " 'alternatively activated macrophage': {'kidney interstitial alternatively activated macrophage': {}}},\n", + " 'tissue-resident macrophage': {'Kupffer cell': {},\n", + " 'peritoneal macrophage': {},\n", + " 'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'mesangial phagocyte': {},\n", + " 'thymic macrophage': {'thymic medullary macrophage': {},\n", + " 'thymic cortical macrophage': {}},\n", + " 'secondary lymphoid organ macrophage': {'lymph node macrophage': {'lymph node subcapsular sinus macrophage': {},\n", + " 'lymph node tingible body macrophage': {}},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}},\n", + " 'mucosa-associated lymphoid tissue macrophage': {'gut-associated lymphoid tissue macrophage': {'gastrointestinal tract (lamina propria) macrophage': {'gastrointestinal tract (lamina propria) macrophage of small intestine': {},\n", + " 'gastrointestinal tract (lamina propria) macrophage of large intestine': {}},\n", + " 'tonsillar macrophage': {},\n", + " \"Peyer's patch macrophage\": {}},\n", + " 'nasal and broncial associated lymphoid tissue macrophage': {}}},\n", + " 'central nervous system macrophage': {'microglial cell': {'immature microglial cell': {},\n", + " 'mature microglial cell': {}},\n", + " 'meningeal macrophage': {},\n", + " 'choroid-plexus macrophage': {},\n", + " 'perivascular macrophage': {}},\n", + " 'melanophage': {},\n", + " 'pleural macrophage': {},\n", + " 'bone marrow macrophage': {},\n", + " 'adipose macrophage': {'F4/80-negative adipose macrophage': {},\n", + " 'F4/80-positive adipose macrophage': {}},\n", + " 'kidney resident macrophage': {},\n", + " 'lung interstitial macrophage': {}},\n", + " 'epithelioid macrophage': {},\n", + " 'appendix macrophage': {},\n", + " 'colon macrophage': {},\n", + " 'macrophage of medullary sinus of lymph node': {},\n", + " 'anorectum macrophage': {},\n", + " 'lung macrophage': {'alveolar macrophage': {'CCL3-positive alveolar macrophage': {},\n", + " 'metallothionein-positive alveolar macrophage': {}},\n", + " 'lung interstitial macrophage': {}},\n", + " 'Hofbauer cell': {}},\n", + " 'Langerhans cell': {'CD1a-positive Langerhans cell': {'immature CD1a-positive Langerhans cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {}},\n", + " 'CD8_alpha-low Langerhans cell': {'immature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {}},\n", + " 'epidermal Langerhans cell': {}},\n", + " 'monocyte': {'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'non-classical monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}},\n", + " 'CD14-low, CD16-positive monocyte': {}},\n", + " 'CD115-positive monocyte': {'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}},\n", + " 'CD14-positive monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'CD14-low, CD16-positive monocyte': {},\n", + " 'CD14-positive, CD16-positive monocyte': {'CD14-positive, CD16-low monocyte': {}}},\n", + " 'intermediate monocyte': {'CD14-positive, CD16-low monocyte': {},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}}},\n", + " 'multinucleated giant cell': {},\n", + " 'myeloid dendritic cell': {'myeloid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {},\n", + " 'CD1c-positive myeloid dendritic cell': {},\n", + " 'CD16-positive myeloid dendritic cell': {'immature CD16-positive myeloid dendritic cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'monocyte-derived dendritic cell': {}},\n", + " 'immature conventional dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'immature interstitial dendritic cell': {},\n", + " 'immature CD1a-positive Langerhans cell': {},\n", + " 'immature CD8_alpha-low Langerhans cell': {},\n", + " 'immature CD16-positive myeloid dendritic cell': {}},\n", + " 'mature conventional dendritic cell': {'mature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'myeloid suppressor cell': {'Gr1-high myeloid suppressor cell': {},\n", + " 'Gr1-low myeloid suppressor cell': {}},\n", + " 'immature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-negative CD11b-negative dendritic cell': {'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-negative dendritic cell': {}},\n", + " 'CD4-positive CD11b-positive dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {}},\n", + " 'CD8_alpha-positive CD11b-negative dendritic cell': {'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {}},\n", + " 'CD103-positive dendritic cell': {'langerin-positive dermal dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {}},\n", + " 'adipose dendritic cell': {'SIRPa-positive adipose dendritic cell': {},\n", + " 'SIRPa-negative adipose dendritic cell': {}}},\n", + " 'mononuclear cell': {'dendritic cell': {'plasmacytoid dendritic cell': {'thymic plasmacytoid dendritic cell': {},\n", + " 'CD11c-low plasmacytoid dendritic cell': {'immature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-low plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-negative plasmacytoid dendritic cell': {},\n", + " 'CD8_alpha-positive plasmacytoid dendritic cell': {}},\n", + " 'CD11c-negative plasmacytoid dendritic cell': {'immature CD11c-negative plasmacytoid dendritic cell': {},\n", + " 'mature CD11c-negative plasmacytoid dendritic cell': {}},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {}},\n", + " 'conventional dendritic cell': {'Langerhans cell': {'CD1a-positive Langerhans cell': {'immature CD1a-positive Langerhans cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {}},\n", + " 'CD8_alpha-low Langerhans cell': {'immature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {}},\n", + " 'epidermal Langerhans cell': {}},\n", + " 'myeloid dendritic cell': {'myeloid dendritic cell, human': {},\n", + " 'CD141-positive myeloid dendritic cell': {},\n", + " 'CD1c-positive myeloid dendritic cell': {},\n", + " 'CD16-positive myeloid dendritic cell': {'immature CD16-positive myeloid dendritic cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'monocyte-derived dendritic cell': {}},\n", + " 'immature conventional dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'immature interstitial dendritic cell': {},\n", + " 'immature CD1a-positive Langerhans cell': {},\n", + " 'immature CD8_alpha-low Langerhans cell': {},\n", + " 'immature CD16-positive myeloid dendritic cell': {}},\n", + " 'mature conventional dendritic cell': {'mature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'mature CD1a-positive Langerhans cell': {},\n", + " 'mature CD8_alpha-low Langerhans cell': {},\n", + " 'mature CD16-positive myeloid dendritic cell': {}},\n", + " 'thymic conventional dendritic cell': {'CD8alpha-positive thymic conventional dendritic cell': {},\n", + " 'CD8alpha-negative thymic conventional dendritic cell': {}},\n", + " 'CD8_alpha-negative CD11b-negative dendritic cell': {'immature CD8_alpha-negative CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-negative dendritic cell': {}},\n", + " 'CD8_alpha-positive CD11b-negative dendritic cell': {'immature CD8_alpha-positive CD11b-negative dendritic cell': {},\n", + " 'mature CD8_alpha-positive CD11b-negative dendritic cell': {}},\n", + " 'CD103-positive dendritic cell': {'langerin-positive dermal dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {}},\n", + " 'adipose dendritic cell': {'SIRPa-positive adipose dendritic cell': {},\n", + " 'SIRPa-negative adipose dendritic cell': {}},\n", + " 'CD11b-positive dendritic cell': {'CD4-positive CD11b-positive dendritic cell': {'immature CD8_alpha-negative CD11b-positive dendritic cell': {},\n", + " 'mature CD8_alpha-negative CD11b-positive dendritic cell': {}},\n", + " 'dermal dendritic cell': {'immature dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'immature CD1a-positive dermal dendritic cell': {}},\n", + " 'mature dermal dendritic cell': {'mature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}},\n", + " 'langerin-positive dermal dendritic cell': {},\n", + " 'langerin-negative dermal dendritic cell': {},\n", + " 'CD14-positive dermal dendritic cell': {'immature CD14-positive dermal dendritic cell': {},\n", + " 'mature CD14-positive dermal dendritic cell': {}},\n", + " 'CD1a-positive dermal dendritic cell': {'immature CD1a-positive dermal dendritic cell': {},\n", + " 'mature CD1a-positive dermal dendritic cell': {}}},\n", + " 'interstitial dendritic cell': {'immature interstitial dendritic cell': {},\n", + " 'mature interstitial dendritic cell': {},\n", + " 'kidney resident dendritic cell': {}},\n", + " 'Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell': {'liver CD103-negative dendritic cell': {},\n", + " 'liver CD103-positive dendritic cell': {},\n", + " 'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {},\n", + " 'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}},\n", + " 'epidermal Langerhans cell': {},\n", + " 'small intestine serosal dendritic cell': {}},\n", + " 'langerin-positive lymph node dendritic cell': {'CD103-positive, langerin-positive lymph node dendritic cell': {},\n", + " 'CD103-negative, langerin-positive lymph node dendritic cell': {}},\n", + " 'langerin-negative, CD103-negative lymph node dendritic cell': {'CD11b-low, CD103-negative, langerin-negative lymph node dendritic cell': {},\n", + " 'CD11b-high, CD103-negative, langerin-negative lymph node dendritic cell': {}}},\n", + " 'dendritic cell, human': {'myeloid dendritic cell, human': {},\n", + " 'plasmacytoid dendritic cell, human': {},\n", + " 'Axl+ dendritic cell, human': {}},\n", + " 'dendritic cell of appendix': {},\n", + " 'liver dendritic cell': {},\n", + " 'lung migratory dendritic cell': {}},\n", + " 'lymphocyte': {'T cell': {'alpha-beta T cell': {'immature alpha-beta T cell': {'double-positive, alpha-beta thymocyte': {'resting double-positive thymocyte': {},\n", + " 'double-positive blast': {},\n", + " 'CD69-positive double-positive thymocyte': {},\n", + " 'CD4-intermediate, CD8-positive double-positive thymocyte': {},\n", + " 'CD4-positive, CD8-intermediate double-positive thymocyte': {}},\n", + " 'CD4-positive, alpha-beta thymocyte': {'CD24-positive, CD4 single-positive thymocyte': {},\n", + " 'CD69-positive, CD4-positive single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta thymocyte': {'CD24-positive, CD8 single-positive thymocyte': {},\n", + " 'CD69-positive, CD8-positive single-positive thymocyte': {}},\n", + " 'immature NK T cell': {'immature NK T cell stage I': {},\n", + " 'immature NK T cell stage II': {},\n", + " 'immature NK T cell stage III': {},\n", + " 'immature NK T cell stage IV': {}}},\n", + " 'mature alpha-beta T cell': {'CD4-positive, alpha-beta T cell': {'CD4-positive helper T cell': {'T-helper 1 cell': {},\n", + " 'T-helper 2 cell': {},\n", + " 'T-helper 17 cell': {},\n", + " 'Tr1 cell': {},\n", + " 'T-helper 22 cell': {},\n", + " 'T follicular helper cell': {'germinal center T cell': {}},\n", + " 'T-helper 9 cell': {}},\n", + " 'CD4-positive, CD25-positive, alpha-beta regulatory T cell': {'induced T-regulatory cell': {},\n", + " 'natural T-regulatory cell': {},\n", + " 'CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell': {'naive CCR4-positive regulatory T cell': {},\n", + " 'memory CCR4-positive regulatory T cell': {},\n", + " 'activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human': {}},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}}},\n", + " 'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'naive thymus-derived CD4-positive, alpha-beta T cell': {},\n", + " 'activated CD4-positive, alpha-beta T cell': {'activated CD4-positive, alpha-beta T cell, human': {}},\n", + " 'CD4-positive, alpha-beta memory T cell': {'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD4-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD4-positive, alpha-beta T cell': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}},\n", + " 'lung resident memory CD4-positive, alpha-beta T cell': {}},\n", + " 'CD4-positive, alpha-beta cytotoxic T cell': {},\n", + " 'effector CD4-positive, alpha-beta T cell': {},\n", + " 'CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'T-helper 2 cell': {}},\n", + " 'mature CD4 single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta T cell': {'CD8-positive, alpha-beta cytotoxic T cell': {},\n", + " 'CD8-positive, alpha-beta regulatory T cell': {'CD8-positive, CD25-positive, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CD28-negative, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CXCR3-positive, alpha-beta regulatory T cell': {}},\n", + " 'naive thymus-derived CD8-positive, alpha-beta T cell': {},\n", + " 'activated CD8-positive, alpha-beta T cell': {'activated CD8-positive, alpha-beta T cell, human': {}},\n", + " 'CD8-positive, alpha-beta cytokine secreting effector T cell': {'Tc1 cell': {},\n", + " 'Tc2 cell': {},\n", + " 'Tc17 cell': {}},\n", + " 'CD8-positive, alpha-beta memory T cell': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD8-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD8-positive, alpha-beta T cell': {},\n", + " 'effector memory CD8-positive, alpha-beta T cell': {}},\n", + " 'lung resident memory CD8-positive, alpha-beta T cell': {'lung resident memory CD8-positive, CD103-positive, alpha-beta T cell': {}}},\n", + " 'effector CD8-positive, alpha-beta T cell': {},\n", + " 'CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'Tc2 cell': {}},\n", + " 'mature CD8 single-positive thymocyte': {}},\n", + " 'alpha-beta intraepithelial T cell': {'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'CD8-alpha-beta-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD4-negative, CD8-negative, alpha-beta intraepithelial T cell': {}},\n", + " 'mature NK T cell': {'type I NK T cell': {'CD4-positive type I NK T cell': {'activated CD4-positive type I NK T cell': {},\n", + " 'CD4-positive type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-positive type I NK T cell secreting interleukin-4': {}},\n", + " 'CD4-negative, CD8-negative type I NK T cell': {'activated CD4-negative, CD8-negative type I NK T cell': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interleukin-4': {}}},\n", + " 'type II NK T cell': {'activated type II NK T cell': {},\n", + " 'type II NK T cell secreting interferon-gamma': {},\n", + " 'type II NK T cell secreting interleukin-4': {}}},\n", + " 'mucosal invariant T cell': {},\n", + " 'effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {}}}},\n", + " 'gamma-delta T cell': {'immature gamma-delta T cell': {'CD25-positive, CD27-positive immature gamma-delta T cell': {}},\n", + " 'mature gamma-delta T cell': {'gamma-delta intraepithelial T cell': {'CD8-alpha alpha positive, gamma-delta intraepithelial T cell': {'Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell': {},\n", + " 'Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell': {}},\n", + " 'CD4-negative CD8-negative gamma-delta intraepithelial T cell': {}},\n", + " 'dendritic epidermal T cell': {},\n", + " 'CD27-positive gamma-delta T cell': {},\n", + " 'CD27-negative gamma-delta T cell': {}},\n", + " 'gamma-delta thymocyte': {'immature Vgamma2-positive thymocyte': {},\n", + " 'mature Vgamma2-positive thymocyte': {},\n", + " 'immature Vgamma2-negative thymocyte': {},\n", + " 'mature Vgamma2-negative thymocyte': {},\n", + " 'Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {'mature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {},\n", + " 'immature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {}},\n", + " 'Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {'immature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {},\n", + " 'mature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {}}}},\n", + " 'mature T cell': {'mature alpha-beta T cell': {'CD4-positive, alpha-beta T cell': {'CD4-positive helper T cell': {'T-helper 1 cell': {},\n", + " 'T-helper 2 cell': {},\n", + " 'T-helper 17 cell': {},\n", + " 'Tr1 cell': {},\n", + " 'T-helper 22 cell': {},\n", + " 'T follicular helper cell': {'germinal center T cell': {}},\n", + " 'T-helper 9 cell': {}},\n", + " 'CD4-positive, CD25-positive, alpha-beta regulatory T cell': {'induced T-regulatory cell': {},\n", + " 'natural T-regulatory cell': {},\n", + " 'CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell': {'naive CCR4-positive regulatory T cell': {},\n", + " 'memory CCR4-positive regulatory T cell': {},\n", + " 'activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human': {}},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}}},\n", + " 'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'naive thymus-derived CD4-positive, alpha-beta T cell': {},\n", + " 'activated CD4-positive, alpha-beta T cell': {'activated CD4-positive, alpha-beta T cell, human': {}},\n", + " 'CD4-positive, alpha-beta memory T cell': {'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD4-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD4-positive, alpha-beta T cell': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}},\n", + " 'lung resident memory CD4-positive, alpha-beta T cell': {}},\n", + " 'CD4-positive, alpha-beta cytotoxic T cell': {},\n", + " 'effector CD4-positive, alpha-beta T cell': {},\n", + " 'CD4-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'T-helper 2 cell': {}},\n", + " 'mature CD4 single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta T cell': {'CD8-positive, alpha-beta cytotoxic T cell': {},\n", + " 'CD8-positive, alpha-beta regulatory T cell': {'CD8-positive, CD25-positive, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CD28-negative, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CXCR3-positive, alpha-beta regulatory T cell': {}},\n", + " 'naive thymus-derived CD8-positive, alpha-beta T cell': {},\n", + " 'activated CD8-positive, alpha-beta T cell': {'activated CD8-positive, alpha-beta T cell, human': {}},\n", + " 'CD8-positive, alpha-beta cytokine secreting effector T cell': {'Tc1 cell': {},\n", + " 'Tc2 cell': {},\n", + " 'Tc17 cell': {}},\n", + " 'CD8-positive, alpha-beta memory T cell': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD8-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD8-positive, alpha-beta T cell': {},\n", + " 'effector memory CD8-positive, alpha-beta T cell': {}},\n", + " 'lung resident memory CD8-positive, alpha-beta T cell': {'lung resident memory CD8-positive, CD103-positive, alpha-beta T cell': {}}},\n", + " 'effector CD8-positive, alpha-beta T cell': {},\n", + " 'CD8-positive, CXCR3-negative, CCR6-negative, alpha-beta T cell': {'Tc2 cell': {}},\n", + " 'mature CD8 single-positive thymocyte': {}},\n", + " 'alpha-beta intraepithelial T cell': {'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'CD8-alpha-beta-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD4-negative, CD8-negative, alpha-beta intraepithelial T cell': {}},\n", + " 'mature NK T cell': {'type I NK T cell': {'CD4-positive type I NK T cell': {'activated CD4-positive type I NK T cell': {},\n", + " 'CD4-positive type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-positive type I NK T cell secreting interleukin-4': {}},\n", + " 'CD4-negative, CD8-negative type I NK T cell': {'activated CD4-negative, CD8-negative type I NK T cell': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interferon-gamma': {},\n", + " 'CD4-negative, CD8-negative type I NK T cell secreting interleukin-4': {}}},\n", + " 'type II NK T cell': {'activated type II NK T cell': {},\n", + " 'type II NK T cell secreting interferon-gamma': {},\n", + " 'type II NK T cell secreting interleukin-4': {}}},\n", + " 'mucosal invariant T cell': {},\n", + " 'effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {}}},\n", + " 'mature gamma-delta T cell': {'gamma-delta intraepithelial T cell': {'CD8-alpha alpha positive, gamma-delta intraepithelial T cell': {'Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell': {},\n", + " 'Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell': {}},\n", + " 'CD4-negative CD8-negative gamma-delta intraepithelial T cell': {}},\n", + " 'dendritic epidermal T cell': {},\n", + " 'CD27-positive gamma-delta T cell': {},\n", + " 'CD27-negative gamma-delta T cell': {}},\n", + " 'memory T cell': {'CD4-positive, alpha-beta memory T cell': {'effector memory CD4-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD4-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD4-positive, alpha-beta T cell': {},\n", + " 'effector memory CD4-positive, alpha-beta T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}},\n", + " 'lung resident memory CD4-positive, alpha-beta T cell': {}},\n", + " 'CD8-positive, alpha-beta memory T cell': {'effector memory CD8-positive, alpha-beta T cell, terminally differentiated': {},\n", + " 'CD8-positive, alpha-beta memory T cell, CD45RO-positive': {'central memory CD8-positive, alpha-beta T cell': {},\n", + " 'effector memory CD8-positive, alpha-beta T cell': {}},\n", + " 'lung resident memory CD8-positive, alpha-beta T cell': {'lung resident memory CD8-positive, CD103-positive, alpha-beta T cell': {}}}},\n", + " 'regulatory T cell': {'CD4-positive, CD25-positive, alpha-beta regulatory T cell': {'induced T-regulatory cell': {},\n", + " 'natural T-regulatory cell': {},\n", + " 'CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell': {'naive CCR4-positive regulatory T cell': {},\n", + " 'memory CCR4-positive regulatory T cell': {},\n", + " 'activated CD4-positive, CD25-positive, CCR4-positive, alpha-beta regulatory T cell, human': {}},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}},\n", + " 'memory regulatory T cell': {'memory CCR4-positive regulatory T cell': {}}},\n", + " 'CD8-positive, alpha-beta regulatory T cell': {'CD8-positive, CD25-positive, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CD28-negative, alpha-beta regulatory T cell': {},\n", + " 'CD8-positive, CXCR3-positive, alpha-beta regulatory T cell': {}},\n", + " 'Tr1 cell': {},\n", + " 'T follicular regulatory cell': {}},\n", + " 'naive T cell': {'naive thymus-derived CD4-positive, alpha-beta T cell': {},\n", + " 'naive thymus-derived CD8-positive, alpha-beta T cell': {},\n", + " 'naive regulatory T cell': {'naive CCR4-positive regulatory T cell': {}}},\n", + " 'effector T cell': {'cytotoxic T cell': {},\n", + " 'helper T cell': {},\n", + " 'effector CD4-positive, alpha-beta T cell': {},\n", + " 'effector CD8-positive, alpha-beta T cell': {},\n", + " 'innate effector T cell': {},\n", + " 'exhausted T cell': {}},\n", + " 'intraepithelial lymphocyte': {'alpha-beta intraepithelial T cell': {'CD4-positive, alpha-beta intraepithelial T cell': {'CD2-positive, CD5-positive, CD44-positive alpha-beta intraepithelial T cell': {}},\n", + " 'CD8-alpha-beta-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell': {},\n", + " 'CD4-negative, CD8-negative, alpha-beta intraepithelial T cell': {}},\n", + " 'gamma-delta intraepithelial T cell': {'CD8-alpha alpha positive, gamma-delta intraepithelial T cell': {'Vgamma5-positive CD8alpha alpha positive gamma-delta intraepithelial T cell': {},\n", + " 'Vgamma5-negative CD8alpha alpha positive gamma-delta intraepithelial T cell': {}},\n", + " 'CD4-negative CD8-negative gamma-delta intraepithelial T cell': {}}},\n", + " \"small intestine Peyer's patch T cell\": {}},\n", + " 'immature T cell': {'immature alpha-beta T cell': {'double-positive, alpha-beta thymocyte': {'resting double-positive thymocyte': {},\n", + " 'double-positive blast': {},\n", + " 'CD69-positive double-positive thymocyte': {},\n", + " 'CD4-intermediate, CD8-positive double-positive thymocyte': {},\n", + " 'CD4-positive, CD8-intermediate double-positive thymocyte': {}},\n", + " 'CD4-positive, alpha-beta thymocyte': {'CD24-positive, CD4 single-positive thymocyte': {},\n", + " 'CD69-positive, CD4-positive single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta thymocyte': {'CD24-positive, CD8 single-positive thymocyte': {},\n", + " 'CD69-positive, CD8-positive single-positive thymocyte': {}},\n", + " 'immature NK T cell': {'immature NK T cell stage I': {},\n", + " 'immature NK T cell stage II': {},\n", + " 'immature NK T cell stage III': {},\n", + " 'immature NK T cell stage IV': {}}},\n", + " 'immature gamma-delta T cell': {'CD25-positive, CD27-positive immature gamma-delta T cell': {}},\n", + " 'thymocyte': {'immature single positive thymocyte': {},\n", + " 'double-positive, alpha-beta thymocyte': {'resting double-positive thymocyte': {},\n", + " 'double-positive blast': {},\n", + " 'CD69-positive double-positive thymocyte': {},\n", + " 'CD4-intermediate, CD8-positive double-positive thymocyte': {},\n", + " 'CD4-positive, CD8-intermediate double-positive thymocyte': {}},\n", + " 'CD4-positive, alpha-beta thymocyte': {'CD24-positive, CD4 single-positive thymocyte': {},\n", + " 'CD69-positive, CD4-positive single-positive thymocyte': {}},\n", + " 'CD8-positive, alpha-beta thymocyte': {'CD24-positive, CD8 single-positive thymocyte': {},\n", + " 'CD69-positive, CD8-positive single-positive thymocyte': {}},\n", + " 'CD25-positive, CD27-positive immature gamma-delta T cell': {},\n", + " 'fetal thymocyte': {'immature dendritic epithelial T cell precursor': {},\n", + " 'immature Vgamma2-positive fetal thymocyte': {},\n", + " 'mature dendritic epithelial T cell precursor': {},\n", + " 'mature Vgamma2-positive fetal thymocyte': {}},\n", + " 'double negative thymocyte': {'DN2 thymocyte': {'DN2a thymocyte': {},\n", + " 'DN2b thymocyte': {}},\n", + " 'DN3 thymocyte': {},\n", + " 'DN4 thymocyte': {},\n", + " 'gamma-delta thymocyte': {'immature Vgamma2-positive thymocyte': {},\n", + " 'mature Vgamma2-positive thymocyte': {},\n", + " 'immature Vgamma2-negative thymocyte': {},\n", + " 'mature Vgamma2-negative thymocyte': {},\n", + " 'Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {'mature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {},\n", + " 'immature Vgamma1.1-positive, Vdelta6.3-negative thymocyte': {}},\n", + " 'Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {'immature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {},\n", + " 'mature Vgamma1.1-positive, Vdelta6.3-positive thymocyte': {}}},\n", + " 'specified double negative thymocyte (Homo sapiens)': {},\n", + " 'committed double negative thymocyte (Homo sapiens)': {},\n", + " 'rearranging double negative thymocyte (Homo sapiens)': {},\n", + " 'double negative T regulatory cell': {}},\n", + " 'CD8aa(I) thymocyte': {},\n", + " 'CD8aa(II) thymocyte': {}}},\n", + " 'T cell of appendix': {},\n", + " 'T cell of medullary sinus of lymph node': {},\n", + " 'T cell of anorectum': {},\n", + " 'lymph node paracortex T cell': {}},\n", + " 'lymphocyte of B lineage': {'B cell': {'B cell, CD19-positive': {'mature B cell': {'memory B cell': {'unswitched memory B cell': {'CD38-negative unswitched memory B cell': {'B220-positive CD38-negative unswitched memory B cell': {'B220-low CD38-negative unswitched memory B cell': {}}},\n", + " 'CD38-positive unswitched memory B cell': {'B220-positive CD38-positive unswitched memory B cell': {'B220-low CD38-positive unswitched memory B cell': {}}}},\n", + " 'class switched memory B cell': {'IgE memory B cell': {},\n", + " 'IgA memory B cell': {},\n", + " 'IgG memory B cell': {'CD38-positive IgG memory B cell': {'IgD-positive CD38-positive IgG memory B cell': {},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {}},\n", + " 'CD38-negative IgG memory B cell': {}},\n", + " 'IgG-negative class switched memory B cell': {'CD38-negative IgG-negative class switched memory B cell': {'CD24-positive CD38-negative IgG-negative class switched memory B cell': {},\n", + " 'CD24-negative CD38-negative IgG-negative class switched memory B cell': {}},\n", + " 'CD38-positive IgG-negative class switched memory B cell': {'B220-positive CD38-positive IgG-negative class switched memory B cell': {'B220-low CD38-positive IgG-negative class switched memory B cell': {}}}}},\n", + " 'IgD-negative memory B cell': {'Bm5 B cell': {},\n", + " 'IgM memory B cell': {},\n", + " 'double negative memory B cell': {'IgG-positive double negative memory B cell': {},\n", + " 'IgG-negative double negative memory B cell': {}},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {},\n", + " 'CD38-negative IgG memory B cell': {}}},\n", + " 'naive B cell': {'CD38-positive naive B cell': {'B220-positive CD38-positive naive B cell': {'B220-low CD38-positive naive B cell': {}}},\n", + " 'CD38-negative naive B cell': {}},\n", + " 'B-1 B cell': {'B-1a B cell': {}, 'B-1b B cell': {}},\n", + " 'B-2 B cell': {'follicular B cell': {'Bm1 B cell': {},\n", + " 'Bm2 B cell': {}},\n", + " 'fraction F mature B cell': {'Bm1 B cell': {}},\n", + " \"Peyer's patch B cell\": {}},\n", + " 'germinal center B cell': {'Bm3-delta B cell': {},\n", + " \"Bm2' B cell\": {},\n", + " 'Bm3 B cell': {},\n", + " 'Bm4 B cell': {},\n", + " 'centrocyte': {},\n", + " 'centroblast': {},\n", + " 'tonsil germinal center B cell': {}},\n", + " 'marginal zone B cell of spleen': {},\n", + " 'Be cell': {'Be1 Cell': {}, 'Be2 cell': {}},\n", + " 'regulatory B cell': {},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}},\n", + " 'marginal zone B cell of lymph node': {}},\n", + " 'immature B cell': {'fraction E immature B cell': {},\n", + " 'CD38-negative immature B cell': {}},\n", + " 'precursor B cell': {'pre-B-II cell': {'small pre-B-II cell': {'CD22-positive, CD38-low small pre-B cell': {}},\n", + " 'large pre-B-II cell': {'preBCR-positive large pre-B-II cell': {'CD38-high pre-BCR positive cell': {}},\n", + " 'preBCR-negative large pre-B-II cell': {}}},\n", + " 'pre-B-I cell': {},\n", + " 'late pro-B cell': {},\n", + " \"fraction C' precursor B cell\": {},\n", + " 'fraction B/C precursor B cell': {'fraction B precursor B cell': {},\n", + " 'fraction C precursor B cell': {},\n", + " 'fraction D precursor B cell': {}}},\n", + " 'transitional stage B cell': {'T1 B cell': {},\n", + " 'T2 B cell': {},\n", + " 'T3 B cell': {}}},\n", + " 'B cell of appendix': {},\n", + " 'lymph node mantle zone B cell': {},\n", + " 'B cell of medullary sinus of lymph node': {},\n", + " 'B cell of anorectum': {},\n", + " 'monocytoid B cell': {}},\n", + " 'antibody secreting cell': {'plasma cell': {'long lived plasma cell': {'IgE plasma cell': {},\n", + " 'IgG plasma cell': {},\n", + " 'IgM plasma cell': {},\n", + " 'IgA plasma cell': {}},\n", + " 'short lived plasma cell': {'IgE short lived plasma cell': {},\n", + " 'IgA short lived plasma cell': {},\n", + " 'IgG short lived plasma cell': {},\n", + " 'IgM short lived plasma cell': {}},\n", + " 'plasma cell of appendix': {},\n", + " 'plasma cell of medullary sinus of lymph node': {}},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}}},\n", + " 'lymphocyte of B lineage, CD19-positive': {'B cell, CD19-positive': {'mature B cell': {'memory B cell': {'unswitched memory B cell': {'CD38-negative unswitched memory B cell': {'B220-positive CD38-negative unswitched memory B cell': {'B220-low CD38-negative unswitched memory B cell': {}}},\n", + " 'CD38-positive unswitched memory B cell': {'B220-positive CD38-positive unswitched memory B cell': {'B220-low CD38-positive unswitched memory B cell': {}}}},\n", + " 'class switched memory B cell': {'IgE memory B cell': {},\n", + " 'IgA memory B cell': {},\n", + " 'IgG memory B cell': {'CD38-positive IgG memory B cell': {'IgD-positive CD38-positive IgG memory B cell': {},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {}},\n", + " 'CD38-negative IgG memory B cell': {}},\n", + " 'IgG-negative class switched memory B cell': {'CD38-negative IgG-negative class switched memory B cell': {'CD24-positive CD38-negative IgG-negative class switched memory B cell': {},\n", + " 'CD24-negative CD38-negative IgG-negative class switched memory B cell': {}},\n", + " 'CD38-positive IgG-negative class switched memory B cell': {'B220-positive CD38-positive IgG-negative class switched memory B cell': {'B220-low CD38-positive IgG-negative class switched memory B cell': {}}}}},\n", + " 'IgD-negative memory B cell': {'Bm5 B cell': {},\n", + " 'IgM memory B cell': {},\n", + " 'double negative memory B cell': {'IgG-positive double negative memory B cell': {},\n", + " 'IgG-negative double negative memory B cell': {}},\n", + " 'IgD-negative CD38-positive IgG memory B cell': {},\n", + " 'CD38-negative IgG memory B cell': {}}},\n", + " 'naive B cell': {'CD38-positive naive B cell': {'B220-positive CD38-positive naive B cell': {'B220-low CD38-positive naive B cell': {}}},\n", + " 'CD38-negative naive B cell': {}},\n", + " 'B-1 B cell': {'B-1a B cell': {}, 'B-1b B cell': {}},\n", + " 'B-2 B cell': {'follicular B cell': {'Bm1 B cell': {},\n", + " 'Bm2 B cell': {}},\n", + " 'fraction F mature B cell': {'Bm1 B cell': {}},\n", + " \"Peyer's patch B cell\": {}},\n", + " 'germinal center B cell': {'Bm3-delta B cell': {},\n", + " \"Bm2' B cell\": {},\n", + " 'Bm3 B cell': {},\n", + " 'Bm4 B cell': {},\n", + " 'centrocyte': {},\n", + " 'centroblast': {},\n", + " 'tonsil germinal center B cell': {}},\n", + " 'marginal zone B cell of spleen': {},\n", + " 'Be cell': {'Be1 Cell': {}, 'Be2 cell': {}},\n", + " 'regulatory B cell': {},\n", + " 'plasmablast': {'IgD plasmablast': {},\n", + " 'IgE plasmablast': {},\n", + " 'IgG plasmablast': {},\n", + " 'IgM plasmablast': {},\n", + " 'IgA plasmablast': {},\n", + " 'CD86-positive plasmablast': {}},\n", + " 'marginal zone B cell of lymph node': {}},\n", + " 'immature B cell': {'fraction E immature B cell': {},\n", + " 'CD38-negative immature B cell': {}},\n", + " 'precursor B cell': {'pre-B-II cell': {'small pre-B-II cell': {'CD22-positive, CD38-low small pre-B cell': {}},\n", + " 'large pre-B-II cell': {'preBCR-positive large pre-B-II cell': {'CD38-high pre-BCR positive cell': {}},\n", + " 'preBCR-negative large pre-B-II cell': {}}},\n", + " 'pre-B-I cell': {},\n", + " 'late pro-B cell': {},\n", + " \"fraction C' precursor B cell\": {},\n", + " 'fraction B/C precursor B cell': {'fraction B precursor B cell': {},\n", + " 'fraction C precursor B cell': {},\n", + " 'fraction D precursor B cell': {}}},\n", + " 'transitional stage B cell': {'T1 B cell': {},\n", + " 'T2 B cell': {},\n", + " 'T3 B cell': {}}}},\n", + " 'B-lymphoblast': {}},\n", + " 'innate lymphoid cell': {'group 1 innate lymphoid cell': {'natural killer cell': {'immature natural killer cell': {'CD56-positive, CD161-positive immature natural killer cell, human': {},\n", + " 'CD56-negative, CD161-positive immature natural killer cell, human': {},\n", + " 'CD27-low, CD11b-low immature natural killer cell, mouse': {},\n", + " 'Dx5-negative, NK1.1-positive immature natural killer cell, mouse': {}},\n", + " 'mature natural killer cell': {'CD16-negative, CD56-bright natural killer cell, human': {},\n", + " 'CD16-positive, CD56-dim natural killer cell, human': {},\n", + " 'decidual natural killer cell, human': {},\n", + " 'CD27-high, CD11b-high natural killer cell, mouse': {},\n", + " 'CD27-low, CD11b-high natural killer cell, mouse': {},\n", + " 'CD27-high, CD11b-low natural killer cell, mouse': {},\n", + " 'NK1.1-positive natural killer cell, mouse': {'CD11b-positive, CD27-positive natural killer cell, mouse': {},\n", + " 'NKGA2-positive natural killer cell, mouse': {},\n", + " 'Ly49D-positive natural killer cell, mouse': {},\n", + " 'CD94-positive natural killer cell, mouse': {'CD94-positive Ly49CI-positive natural killer cell, mouse': {}},\n", + " 'Ly49CI-positive natural killer cell, mouse': {'CD94-positive Ly49CI-positive natural killer cell, mouse': {}},\n", + " 'Ly49H-positive natural killer cell, mouse': {},\n", + " 'Ly49D-negative natural killer cell, mouse': {},\n", + " 'Ly49CI-negative natural killer cell, mouse': {},\n", + " 'CD94-negative natural killer cell, mouse': {},\n", + " 'Ly49H-negative natural killer cell, mouse': {}}},\n", + " 'pre-natural killer cell': {},\n", + " 'CD94-negative, Ly49CI-negative natural killer cell, mouse': {},\n", + " 'hepatic pit cell': {}},\n", + " 'ILC1': {'ILC1, human': {}}},\n", + " 'group 2 innate lymphoid cell': {'group 2 innate lymphoid cell, human': {},\n", + " 'group 2 innate lymphoid cell, mouse': {}},\n", + " 'group 3 innate lymphoid cell': {'group 3 innate lymphoid cell, human': {'NKp44-positive group 3 innate lymphoid cell, human': {},\n", + " 'NKp44-negative group 3 innate lymphoid cell, human': {}},\n", + " 'lymphoid tissue–inducer cell': {}},\n", + " 'immature innate lymphoid cell': {'immature natural killer cell': {'CD56-positive, CD161-positive immature natural killer cell, human': {},\n", + " 'CD56-negative, CD161-positive immature natural killer cell, human': {},\n", + " 'CD27-low, CD11b-low immature natural killer cell, mouse': {},\n", + " 'Dx5-negative, NK1.1-positive immature natural killer cell, mouse': {}},\n", + " 'CD34-negative, CD117-positive innate lymphoid cell, human': {'CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human': {},\n", + " 'KLRG1-positive innate lymphoid cell, human': {}},\n", + " 'CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human': {'NKp46-positive innate lymphoid cell, human': {}}}},\n", + " 'natural helper lymphocyte': {},\n", + " \"Peyer's patch lymphocyte\": {\"Peyer's patch B cell\": {},\n", + " \"small intestine Peyer's patch T cell\": {}},\n", + " 'lymphocyte of large intestine lamina propria': {},\n", + " 'lymphocyte of small intestine lamina propria': {},\n", + " 'lymphoblast': {'B-lymphoblast': {}},\n", + " 'blood lymphocyte': {'peripheral blood lymphocyte': {}}},\n", + " 'monocyte': {'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'non-classical monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}},\n", + " 'CD14-low, CD16-positive monocyte': {}},\n", + " 'CD115-positive monocyte': {'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}},\n", + " 'CD14-positive monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'CD14-low, CD16-positive monocyte': {},\n", + " 'CD14-positive, CD16-positive monocyte': {'CD14-positive, CD16-low monocyte': {}}},\n", + " 'intermediate monocyte': {'CD14-positive, CD16-low monocyte': {},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}}},\n", + " 'mononuclear osteoclast': {'mononuclear odontoclast': {}},\n", + " 'mononuclear cell of bone marrow': {},\n", + " 'peripheral blood mononuclear cell': {'blood lymphocyte': {'peripheral blood lymphocyte': {}}},\n", + " 'mononuclear cell of umbilical cord': {}},\n", + " 'nongranular leukocyte': {'neutrophilic myelocyte': {},\n", + " 'eosinophilic myelocyte': {},\n", + " 'basophilic myelocyte': {}},\n", + " 'splenocyte': {'marginal zone B cell of spleen': {},\n", + " 'splenic macrophage': {'splenic marginal zone macrophage': {},\n", + " 'splenic metallophillic macrophage': {},\n", + " 'splenic red pulp macrophage': {},\n", + " 'splenic white pulp macrophage': {'splenic tingible body macrophage': {}}}}},\n", + " 'nucleated reticulocyte': {}},\n", + " 'skeletogenic cell': {},\n", + " 'transit amplifying cell': {'transit amplifying cell of colon': {},\n", + " 'transit amplifying cell of small intestine': {},\n", + " 'transit amplifying cell of appendix': {},\n", + " 'transit amplifying cell of anorectum': {}},\n", + " 'zygote': {'animal zygote': {}},\n", + " 'precursor cell': {'stem cell': {'germ line stem cell': {'male germ line stem cell': {},\n", + " 'female germ line stem cell': {}},\n", + " 'multi fate stem cell': {'mesenchymal stem cell': {'metanephric mesenchyme stem cell': {},\n", + " 'hair follicle dermal papilla cell': {'hair follicle dermal papilla cell of scalp': {}},\n", + " 'nephrogenic mesenchyme stem cell': {},\n", + " 'angioblastic mesenchymal cell': {'adult endothelial progenitor cell': {'colony forming unit – Hill cell': {},\n", + " 'circulating angiogenic cell': {},\n", + " 'endothelial colony forming cell': {}}},\n", + " 'amnion mesenchymal stem cell': {},\n", + " 'mesenchymal stem cell of the bone marrow': {'mesenchymal stem cell of femoral bone marrow': {}},\n", + " 'chorionic membrane mesenchymal stem cell': {},\n", + " 'mesenchymal stem cell of umbilical cord': {\"mesenchymal stem cell of Wharton's jelly\": {}},\n", + " 'mesenchymal stem cell of adipose tissue': {'mesenchymal stem cell of abdominal adipose tissue': {}},\n", + " 'hepatic mesenchymal stem cell': {},\n", + " 'vertebral mesenchymal stem cell': {},\n", + " 'amniotic stem cell': {},\n", + " 'mesenchymal lymphangioblast': {},\n", + " 'placental amniotic mesenchymal stromal cell': {}},\n", + " 'blastemal cell': {},\n", + " 'multi-potent skeletal muscle stem cell': {},\n", + " 'stem cell of gastric gland': {},\n", + " 'hepatic stem cell': {'hepatic mesenchymal stem cell': {}},\n", + " 'intestinal crypt stem cell': {'intestinal crypt stem cell of large intestine': {'intestinal crypt stem cell of appendix': {}},\n", + " 'intestinal crypt stem cell of small intestine': {},\n", + " 'intestinal crypt stem cell of colon': {},\n", + " 'intestinal crypt stem cell of anorectum': {}},\n", + " 'type III taste bud cell': {},\n", + " 'keratinocyte stem cell': {},\n", + " 'prostate stem cell': {},\n", + " 'mammary stem cell': {},\n", + " 'cardioblast': {},\n", + " 'retinal progenitor cell': {},\n", + " 'lymphangioblast': {'mesenchymal lymphangioblast': {},\n", + " 'vascular lymphangioblast': {}},\n", + " 'hepatoblast': {},\n", + " 'neural crest cell': {'migratory neural crest cell': {'migratory cranial neural crest cell': {},\n", + " 'migratory trunk neural crest cell': {},\n", + " 'migratory enteric neural crest cell': {},\n", + " 'migratory cardiac neural crest cell': {'cardiac mesenchymal cell': {'endocardial cushion cell': {}}}},\n", + " 'premigratory neural crest cell': {},\n", + " 'vagal neural crest cell': {}}},\n", + " 'somatic stem cell': {'single fate stem cell': {'epithelial fate stem cell': {'stratified epithelial stem cell': {'stratified keratinized epithelial stem cell': {},\n", + " 'stratified non keratinized epithelial stem cell': {}},\n", + " 'seam cell': {},\n", + " 'follicle stem cell (sensu Arthropoda)': {},\n", + " 'basal cell': {'basal cell of epidermis': {'limb basal cell of epidermis': {}},\n", + " 'respiratory basal cell': {'basal cell of epithelium of trachea': {},\n", + " 'basal cell of epithelium of bronchus': {},\n", + " 'basal cell of epithelium of terminal bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of respiratory bronchiole': {'bronchioalveolar stem cell': {}},\n", + " 'basal cell of epithelium of lobular bronchiole': {}},\n", + " 'epithelial cell of stratum germinativum of esophagus': {},\n", + " 'basal cell of urothelium': {},\n", + " 'airway submucosal gland duct basal cell': {}},\n", + " 'amniotic epithelial stem cell': {}},\n", + " 'hair matrix stem cell': {},\n", + " 'primitive cardiac myocyte': {},\n", + " 'skeletal muscle satellite stem cell': {}},\n", + " 'hematopoietic stem cell': {'Kit and Sca1-positive hematopoietic stem cell': {'short term hematopoietic stem cell': {},\n", + " 'long term hematopoietic stem cell': {}},\n", + " 'CD34-positive, CD38-negative hematopoietic stem cell': {},\n", + " 'peripheral blood stem cell': {'cord blood hematopoietic stem cell': {}},\n", + " 'gestational hematopoietic stem cell': {'fetal liver hematopoietic progenitor cell': {},\n", + " 'yolk sac hematopoietic stem cell': {},\n", + " 'placental hematopoietic stem cell': {},\n", + " 'AGM hematopoietic stem cell': {},\n", + " 'cord blood hematopoietic stem cell': {}}},\n", + " 'totipotent stem cell': {'epiblast cell': {}},\n", + " 'pluripotent stem cell': {},\n", + " 'neuroepithelial stem cell': {},\n", + " 'stem cell of epidermis': {'basal cell of epidermis': {'limb basal cell of epidermis': {}}}},\n", + " 'type IV taste receptor cell': {},\n", + " 'embryonic stem cell': {},\n", + " 'Leydig stem cell': {},\n", + " 'dental pulp stem cell': {}},\n", + " 'non-terminally differentiated cell': {'glioblast': {'glioblast (sensu Vertebrata)': {},\n", + " 'glioblast (sensu Nematoda and Protostomia)': {},\n", + " 'Schwann cell precursor': {}},\n", + " 'neuroblast (sensu Vertebrata)': {'cerebellar granule cell precursor': {},\n", + " 'neural crest derived neuroblast': {},\n", + " 'forebrain neuroblast': {}},\n", + " 'chondroblast': {},\n", + " 'odontoblast': {'non-terminally differentiated odontoblast': {},\n", + " 'terminally differentiated odontoblast': {}},\n", + " 'osteoblast': {'cementoblast': {},\n", + " 'terminally differentiated osteoblast': {},\n", + " 'non-terminally differentiated osteoblast': {},\n", + " 'femural osteoblast': {},\n", + " 'calvarial osteoblast': {}},\n", + " 'epidermoblast': {},\n", + " 'melanoblast': {},\n", + " 'muscle precursor cell': {'myoblast': {'smooth muscle myoblast': {},\n", + " 'skeletal muscle myoblast': {'slow muscle myoblast': {},\n", + " 'fast muscle myoblast': {},\n", + " 'adult skeletal muscle myoblast': {}},\n", + " 'somatic muscle myoblast': {'fusion competent myoblast': {},\n", + " 'muscle founder cell': {}},\n", + " 'cardiac myoblast': {'cardioblast (sensu Arthropoda)': {},\n", + " 'cardiac muscle myoblast': {}}},\n", + " 'adepithelial cell': {},\n", + " 'skeletal muscle satellite cell': {'skeletal muscle satellite stem cell': {},\n", + " 'quiescent skeletal muscle satellite cell': {},\n", + " 'activated skeletal muscle satellite cell': {},\n", + " 'skeletal muscle satellite myogenic cell': {}},\n", + " 'adaxial cell': {}},\n", + " 'iridoblast': {},\n", + " 'xanthoblast': {},\n", + " 'leucoblast': {},\n", + " 'pigment erythroblast': {},\n", + " 'cyanoblast': {},\n", + " 'preameloblast': {},\n", + " 'precementoblast': {},\n", + " 'preodontoblast': {},\n", + " 'prechondroblast': {},\n", + " 'preosteoblast': {},\n", + " 'neural progenitor cell': {'ganglion mother cell': {}}},\n", + " 'progenitor cell': {'hematopoietic stem cell': {'Kit and Sca1-positive hematopoietic stem cell': {'short term hematopoietic stem cell': {},\n", + " 'long term hematopoietic stem cell': {}},\n", + " 'CD34-positive, CD38-negative hematopoietic stem cell': {},\n", + " 'peripheral blood stem cell': {'cord blood hematopoietic stem cell': {}},\n", + " 'gestational hematopoietic stem cell': {'fetal liver hematopoietic progenitor cell': {},\n", + " 'yolk sac hematopoietic stem cell': {},\n", + " 'placental hematopoietic stem cell': {},\n", + " 'AGM hematopoietic stem cell': {},\n", + " 'cord blood hematopoietic stem cell': {}}},\n", + " 'megakaryocyte-erythroid progenitor cell': {'CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell': {},\n", + " 'Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell': {}},\n", + " 'common lymphoid progenitor': {'CD34-positive, CD38-positive common lymphoid progenitor': {},\n", + " 'Kit-positive, Sca1-positive common lymphoid progenitor': {},\n", + " 'CD7-negative lymphoid progenitor cell': {},\n", + " 'CD7-positive lymphoid progenitor cell': {}},\n", + " 'odontoblast': {'non-terminally differentiated odontoblast': {},\n", + " 'terminally differentiated odontoblast': {}},\n", + " 'osteoblast': {'cementoblast': {},\n", + " 'terminally differentiated osteoblast': {},\n", + " 'non-terminally differentiated osteoblast': {},\n", + " 'femural osteoblast': {},\n", + " 'calvarial osteoblast': {}},\n", + " 'club cell': {},\n", + " 'migratory neural crest cell': {'migratory cranial neural crest cell': {},\n", + " 'migratory trunk neural crest cell': {},\n", + " 'migratory enteric neural crest cell': {},\n", + " 'migratory cardiac neural crest cell': {'cardiac mesenchymal cell': {'endocardial cushion cell': {}}}},\n", + " 'glioblast (sensu Vertebrata)': {},\n", + " 'hair follicle dermal papilla cell': {'hair follicle dermal papilla cell of scalp': {}},\n", + " 'histoblast': {},\n", + " 'nephrogenic mesenchyme stem cell': {},\n", + " 'skeletal muscle myoblast': {'slow muscle myoblast': {},\n", + " 'fast muscle myoblast': {},\n", + " 'adult skeletal muscle myoblast': {}},\n", + " 'melanoblast': {},\n", + " 'granulocyte monocyte progenitor cell': {'CD34-positive, CD38-positive granulocyte monocyte progenitor': {},\n", + " 'Kit-positive granulocyte monocyte progenitor': {}},\n", + " 'angioblastic mesenchymal cell': {'adult endothelial progenitor cell': {'colony forming unit – Hill cell': {},\n", + " 'circulating angiogenic cell': {},\n", + " 'endothelial colony forming cell': {}}},\n", + " 'monocyte': {'classical monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}}},\n", + " 'non-classical monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}},\n", + " 'CD14-low, CD16-positive monocyte': {}},\n", + " 'CD115-positive monocyte': {'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}},\n", + " 'CD14-positive monocyte': {'CD14-positive, CD16-negative classical monocyte': {},\n", + " 'CD14-low, CD16-positive monocyte': {},\n", + " 'CD14-positive, CD16-positive monocyte': {'CD14-positive, CD16-low monocyte': {}}},\n", + " 'intermediate monocyte': {'CD14-positive, CD16-low monocyte': {},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}}},\n", + " 'erythroblast': {'basophilic erythroblast': {'GlyA-positive basophilic erythroblast': {},\n", + " 'Kit-negative, Ly-76 high basophilic erythroblast': {}},\n", + " 'polychromatophilic erythroblast': {'Kit-negative, Ly-76 high polychromatophilic erythroblast': {},\n", + " 'CD71-low, GlyA-positive polychromatic erythroblast': {}},\n", + " 'orthochromatic erythroblast': {'Kit-negative, Ly-76 high orthochromatophilic erythroblasts': {},\n", + " 'CD71-negative, GlyA-positive orthochromatic erythroblast': {}}},\n", + " 'lymphoid lineage restricted progenitor cell': {'pro-NK cell': {},\n", + " 'pro-B cell': {'fraction A pre-pro B cell': {}, 'early pro-B cell': {}},\n", + " 'pro-T cell': {'DN1 thymic pro-T cell': {},\n", + " 'early T lineage precursor': {}}},\n", + " 'myeloid lineage restricted progenitor cell': {'erythroid progenitor cell': {'erythroid progenitor cell, mammalian': {'Kit-positive erythroid progenitor cell': {},\n", + " 'CD34-positive, GlyA-negative erythroid progenitor cell': {}}},\n", + " 'megakaryocyte progenitor cell': {'CD34-positive, CD41-positive, CD42-positive megakaryocyte progenitor cell': {},\n", + " 'Kit-positive megakaryocyte progenitor cell': {},\n", + " 'CD34-positive, CD41-positive, CD42-negative megakaryocyte progenitor cell': {}},\n", + " 'thromboblast': {},\n", + " 'mast cell progenitor': {'Fc-epsilon RIalpha-low mast cell progenitor': {}},\n", + " 'CD115-positive monocyte': {'Gr1-high classical monocyte': {'MHC-II-negative classical monocyte': {'lymphoid MHC-II-negative classical monocyte': {}},\n", + " 'MHC-II-positive classical monocyte': {}},\n", + " 'Gr1-positive, CD43-positive monocyte': {'Gr1-low non-classical monocyte': {'MHC-II-negative non-classical monocyte': {'lymphoid MHC-II-negative non-classical monocyte': {}},\n", + " 'MHC-II-low non-classical monocyte': {},\n", + " 'MHC-II-high non-classical monocyte': {}}}},\n", + " 'granulocytopoietic cell': {'eosinophil progenitor cell': {'Kit-low, CD34-positive eosinophil progenitor cell': {},\n", + " 'CD34-positive, CD38-positive eosinophil progenitor cell': {}},\n", + " 'basophil progenitor cell': {'Fc-epsilon RIalpha-high basophil progenitor cell': {}},\n", + " 'neutrophil progenitor cell': {'neutrophilic myeloblast': {},\n", + " 'neutrophilic promyelocyte': {}},\n", + " 'myeloblast': {'neutrophilic myeloblast': {},\n", + " 'basophilic myeloblast': {},\n", + " 'eosinophilic myeloblast': {}},\n", + " 'promyelocyte': {'neutrophilic promyelocyte': {},\n", + " 'basophilic promyelocyte': {},\n", + " 'eosinophilic promyelocyte': {},\n", + " 'late promyelocyte': {},\n", + " 'early promyelocyte': {}},\n", + " 'basophil mast progenitor cell': {'Kit-positive, integrin beta7-high basophil mast progenitor cell': {}},\n", + " 'metamyelocyte': {'neutrophilic metamyelocyte': {},\n", + " 'basophilic metamyelocyte': {},\n", + " 'eosinophilic metamyelocyte': {}},\n", + " 'myelocyte': {'neutrophilic myelocyte': {},\n", + " 'eosinophilic myelocyte': {}}},\n", + " 'monopoietic cell': {'monoblast': {}, 'promonocyte': {}}},\n", + " 'early lymphoid progenitor': {},\n", + " 'common myeloid progenitor, CD34-positive': {'Kit-positive, CD34-positive common myeloid progenitor': {},\n", + " 'CD34-positive, CD38-positive common myeloid progenitor': {}},\n", + " 'macrophage dendritic cell progenitor': {'Kit-positive macrophage dendritic cell progenitor': {}},\n", + " 'basal cell of epidermis': {'limb basal cell of epidermis': {}},\n", + " 'hepatic oval stem cell': {},\n", + " 'keratinocyte stem cell': {},\n", + " 'progenitor cell of endocrine pancreas': {},\n", + " 'Schwann cell precursor': {},\n", + " 'oligodendrocyte precursor cell': {},\n", + " 'neural crest derived neuroblast': {},\n", + " 'iridoblast': {},\n", + " 'xanthoblast': {},\n", + " 'leucoblast': {},\n", + " 'pigment erythroblast': {},\n", + " 'cyanoblast': {},\n", + " 'preodontoblast': {},\n", + " 'preosteoblast': {},\n", + " 'fetal hepatobiliary progenitor cell': {},\n", + " 'fibro/adipogenic progenitor cell': {},\n", + " 'progenitor cell of mammary luminal epithelium': {},\n", + " 'respiratory suprabasal cell': {},\n", + " 'glial restricted tripotential precursor cell': {}}},\n", + " 'inner cell mass cell': {},\n", + " 'brain vascular cell': {},\n", + " 'gamete-nursing cell': {'germline-derived nurse cell': {'invertebrate nurse cell': {}},\n", + " 'somatic nurse-like cell': {}},\n", + " 'interstitial cell': {'Leydig cell': {},\n", + " 'pulmonary interstitial fibroblast': {'alveolar type 1 fibroblast cell': {},\n", + " 'alveolar type 2 fibroblast cell': {}},\n", + " 'Leydig stem cell': {},\n", + " 'kidney interstitial cell': {'kidney nerve cell': {},\n", + " 'kidney cortex interstitial cell': {'renal cortical fibroblast': {}},\n", + " 'kidney medulla interstitial cell': {'kidney inner medulla interstitial cell': {},\n", + " 'kidney outer medulla interstitial cell': {},\n", + " 'renal medullary fibroblast': {}},\n", + " 'kidney interstitial myofibroblast': {},\n", + " 'kidney interstitial fibroblast': {'renal medullary fibroblast': {},\n", + " 'renal cortical fibroblast': {}},\n", + " 'kidney interstitial fibrocyte': {},\n", + " 'kidney interstitial alternatively activated macrophage': {},\n", + " 'kidney interstitial inflammatory macrophage': {},\n", + " 'kidney interstitial suppressor macrophage': {},\n", + " 'kidney resident macrophage': {},\n", + " 'kidney resident dendritic cell': {},\n", + " 'renal interstitial pericyte': {'extraglomerular mesangial cell': {},\n", + " 'glomerular mesangial cell': {}}},\n", + " 'valve interstitial cell': {}},\n", + " 'perivascular cell': {'vascular associated smooth muscle cell': {'smooth muscle cell of the brain vasculature': {},\n", + " 'microcirculation associated smooth muscle cell': {'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'lymphatic vessel smooth muscle cell': {},\n", + " 'blood vessel smooth muscle cell': {'aortic smooth muscle cell': {},\n", + " 'smooth muscle cell of the umbilical vein': {},\n", + " 'smooth muscle cell of the brachiocephalic vasculature': {},\n", + " 'smooth muscle cell of the pulmonary artery': {},\n", + " 'smooth muscle cell of the coronary artery': {},\n", + " 'smooth muscle cell of the umbilical artery': {},\n", + " 'smooth muscle cell of the subclavian artery': {'smooth muscle cell of the internal thoracic artery': {}},\n", + " 'smooth muscle cell of the carotid artery': {},\n", + " 'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney artery smooth muscle cell': {'arcuate artery smooth muscle cell': {},\n", + " 'interlobulary artery smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {}}},\n", + " 'kidney arteriole smooth muscle cell': {'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}},\n", + " 'kidney venous system smooth muscle cell': {'arcuate vein smooth muscle cell': {},\n", + " 'interlobulary vein smooth muscle cell': {}}}},\n", + " 'perivascular macrophage': {},\n", + " 'lymphangioblast': {'mesenchymal lymphangioblast': {},\n", + " 'vascular lymphangioblast': {}},\n", + " 'mural cell': {'pericyte': {'mesangial cell': {'extraglomerular mesangial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'central nervous system pericyte': {'brain pericyte': {}},\n", + " 'lung pericyte': {},\n", + " 'renal interstitial pericyte': {'extraglomerular mesangial cell': {},\n", + " 'glomerular mesangial cell': {}},\n", + " 'placental pericyte': {'decidual pericyte': {}}},\n", + " 'microcirculation associated smooth muscle cell': {'smooth muscle cell of high endothelial venule of lymph node': {},\n", + " 'kidney afferent arteriole smooth muscle cell': {},\n", + " 'kidney efferent arteriole smooth muscle cell': {}}}}},\n", + " 'cell in vitro': {'experimentally modified cell in vitro': {'cultured cell': {'primary cultured cell': {}},\n", + " 'protoplast': {'spheroplast': {}}}},\n", + " 'abnormal cell': {'neoplastic cell': {'malignant cell': {},\n", + " 'CD25+ mast cell': {}}}}" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "cell_dict" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "#add key, value pair to cell_dict with key 'not available' and value an empty dict\n", + "cell_dict['not available'] = {}\n", + "cell_dict['not applicable'] = {}" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "ename": "NameError", + "evalue": "name 'transform_nested_dict_to_tree' is not defined", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m\n", + "\u001b[0;31mNameError\u001b[0m Traceback (most recent call last)\n", + "\u001b[1;32m/home/compomics/git/Publication/lesSDRF/OBO_parser.ipynb Cell 82\u001b[0m in \u001b[0;36m\u001b[0;34m()\u001b[0m\n", + "\u001b[0;32m----> 1\u001b[0m cell_nodes \u001b[39m=\u001b[39m transform_nested_dict_to_tree(cell_dict)\n", + "\n", + "\u001b[0;31mNameError\u001b[0m: name 'transform_nested_dict_to_tree' is not defined" + ] + } + ], + "source": [ + "cell_nodes = transform_nested_dict_to_tree(cell_dict)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "'Stored all_cell_elements as gzipped json'" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "#cell_nodes = transform_nested_dict_to_tree(cell_dict)\n", + "store_as_gzipped_json(cell_dict, \"cell_dict\")\n", + "#store_as_gzipped_json(cell_nodes, \"cell_nodes\")\n", + "store_as_gzipped_json(cell_list, \"all_cell_elements\")" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + " with gzip.open(\"/home/compomics/git/Publication/lesSDRF/all_cell_elements.json.gz\", \"rb\") as f:\n", + " file_data = json.load(f)" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "yes\n" + ] + } + ], + "source": [ + "#check if file_data contains not available\n", + "if 'not applicable' in file_data:\n", + " print(\"yes\")\n", + "else:\n", + " print(\"no\")" + ] } ], "metadata": { @@ -13167,7 +24525,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.4" + "version": "3.11.11" }, "orig_nbformat": 4, "vscode": { diff --git a/OWL_parser.ipynb b/OWL_parser.ipynb index be52e8f..8823c99 100644 --- a/OWL_parser.ipynb +++ b/OWL_parser.ipynb @@ -6,13 +6,35 @@ "metadata": {}, "outputs": [ { - "name": "stderr", + "name": "stdout", "output_type": "stream", "text": [ - "* Owlready2 * Warning: optimized Cython parser module 'owlready2_optimized' is not available, defaulting to slower Python implementation\n" + "Collecting owlready2\n", + " Downloading owlready2-0.47.tar.gz (27.3 MB)\n", + "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m27.3/27.3 MB\u001b[0m \u001b[31m53.8 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0ma \u001b[36m0:00:01\u001b[0m\n", + "\u001b[?25h Installing build dependencies ... \u001b[?25ldone\n", + "\u001b[?25h Getting requirements to build wheel ... \u001b[?25ldone\n", + "\u001b[?25h Preparing metadata (pyproject.toml) ... \u001b[?25ldone\n", + "\u001b[?25hBuilding wheels for collected packages: owlready2\n", + " Building wheel for owlready2 (pyproject.toml) ... \u001b[?25ldone\n", + "\u001b[?25h Created wheel for owlready2: filename=owlready2-0.47-cp311-cp311-linux_x86_64.whl size=23931538 sha256=0b4e961beaa968682ca87f26b1702cf7551be7ed1c26e9b7e3691da73a6f2bc5\n", + " Stored in directory: /home/compomics/.cache/pip/wheels/25/9a/a3/fb1ac6339caa859c8bb18d685736168b0b51d851af13d81d52\n", + "Successfully built owlready2\n", + "Installing collected packages: owlready2\n", + "Successfully installed owlready2-0.47\n", + "Note: you may need to restart the kernel to use updated packages.\n" ] } ], + "source": [ + "pip install owlready2" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "metadata": {}, + "outputs": [], "source": [ "import requests\n", "import rdflib\n", @@ -161,7 +183,7 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": 6, "metadata": {}, "outputs": [], "source": [ @@ -173,7 +195,7 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": 7, "metadata": {}, "outputs": [], "source": [ @@ -837,7 +859,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.13" + "version": "3.11.11" }, "orig_nbformat": 4, "vscode": { diff --git a/ParsingModule.py b/ParsingModule.py index 52846a1..9abb4a8 100644 --- a/ParsingModule.py +++ b/ParsingModule.py @@ -1,5 +1,5 @@ -import pronto -from pronto import Ontology +# import pronto +# from pronto import Ontology from collections import defaultdict import json import gzip @@ -192,8 +192,13 @@ def fill_in_from_list(df, column, values_list=None, multiple_in_one=False): builder.configure_columns(columns_to_adapt, editable=True, cellEditor="agSelectCellEditor", cellEditorParams={"values": values_list}, cellStyle = cell_style) else: # if not multiple_in_one, just add the column builder.configure_column(column,editable=True,cellEditor="agSelectCellEditor",cellEditorParams={"values": values_list}, cellStyle = cell_style) - builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + builder.configure_grid_options(enableRangeSelection=True, + enableFillHandle=True, + suppressMovableColumns=True, + singleClickEdit=True) gridOptions = builder.build() + gridOptions["enableFillHandle"] = True + gridOptions["enableRangeSelection"] = True grid_return = AgGrid( df, gridOptions=gridOptions, @@ -204,13 +209,17 @@ def fill_in_from_list(df, column, values_list=None, multiple_in_one=False): elif values_list is None: # if there is no list of values, make the column editable builder.configure_column(column, editable=True, cellStyle = cell_style) - builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) + builder.configure_grid_options( + enableRangeSelection=True, enableFillHandle=True, suppressMovableColumns=True, singleClickEdit=True) gridOptions = builder.build() + gridOptions["enableFillHandle"] = True + gridOptions["enableRangeSelection"] = True grid_return = AgGrid( df, gridOptions=gridOptions, update_mode=GridUpdateMode.MANUAL, - data_return_mode=DataReturnMode.AS_INPUT) + height=800, + data_return_mode=DataReturnMode.AS_INPUT, custom_css={"#gridToolBar": {"padding-bottom": "0px !important",}}) df = grid_return["data"] df.replace("empty", np.nan, inplace=True) return df @@ -378,7 +387,7 @@ def convert_df(df): Leading and trailing whitespaces are removed from all columns It then converts the dataframe to a tsv file and downloads it It also adds an comment[tool metadata] to indicate it was built with lesSDRF and ontology versioning""" - df["comment[tool metadata]"] = "lesSDRF v0.1.0" + df["comment[tool metadata]"] = "lesSDRF v0.1.1" #sort dataframe so that "source name" is the first column cols = df.columns.tolist() #get all elements from the list that start with "characteristic" and sort them alphabetically @@ -450,4 +459,187 @@ def autocomplete_species_search(taxum_list, search_term): if len(filtered_options) > 500: st.write("Too many closely related options to display (>500). Please refine your search.") if len(filtered_options) == 0: - st.write("No options found. Please refine your search.") \ No newline at end of file + st.write("No options found. Please refine your search.") + +#------- Refactoring functions +def structure_questions(df, column): + """ + Ask whether multiple values or multiple-in-one exist β†’ modify DataFrame structure accordingly (add columns). + Returns: + - modified DataFrame + - list of columns to edit + - number of required terms + """ + df = df.copy() + columns_to_edit = [column] + index = df.columns.get_loc(column) if column in df.columns else 0 + + col1, col2, col3 = st.columns(3) + with col1: + multiple = st.radio(f"Are there multiple {column}s in your data?", ("No", "Yes")) + if multiple == "Yes": + with col2: + num_required = st.number_input(f"How many different {column}s?", min_value=1, step=1) + with col3: + multi_in_one = st.radio(f"Multiple {column}s within one sample?", ("No", "Yes")) + if multi_in_one == "Yes": + for i in range(num_required - 1): + new_col = f"{column}_{i+1}" + if new_col not in df.columns: + df.insert(index + 1 + i, new_col, "") + columns_to_edit.append(new_col) + else: + num_required = 1 + + return df, columns_to_edit, num_required + +def select_ontology_terms(column, ontology_elements, ontology_tree, num_required=1): + """ + UI for selecting ontology terms via autocomplete and tree. + Returns: + - list of selected ontology terms (strings) + """ + with st.form(f"Select {column} ontology terms", clear_on_submit=True): + col1, col2 = st.columns(2) + selected_auto = col1.multiselect( + f"Select {column} from autocomplete:", + sorted(set(ontology_elements)), + max_selections=num_required + ) + + with col2: + tree_result = tree_select(ontology_tree, no_cascade=True, expand_on_click=True, check_model="leaf") + selected_tree = tree_result["checked"] if tree_result and "checked" in tree_result else [] + + combined = selected_auto + selected_tree + combined = [s.split(",")[-1] for s in combined if s] + + submit = st.form_submit_button("Confirm selection") + + if submit: + if len(combined) != num_required: + st.error(f"Please select exactly {num_required} values.") + return [] + if len(combined) == 1: + st.success(f"Selected: {combined}. Only one option, will be automatically filled in. Just click Update") + else: + st.success(f"Selected: {combined}. Multiple options, use drop down menu within the table and click Update when finished") + return combined + return None + +def edit_dataframe_ontology_aggrid(df, columns_to_edit, dropdown_options): + """ + Editable AgGrid table for ontology input: + - if len(dropdown_options)==1 β†’ autofill column + - if len(dropdown_options)>1 β†’ dropdown editor + - if dropdown_options is None β†’ free text input + """ + df = df.copy() + df.fillna("", inplace=True) + cell_style = {"background-color": "#ffa478"} + + builder = GridOptionsBuilder.from_dataframe(df) + st.write(len(dropdown_options)) + # === CASE 1: autofill === + if dropdown_options and len(dropdown_options) == 1: + autofill_value = dropdown_options[0] + for col in columns_to_edit: + df[col] = autofill_value + st.success(f"Filled columns {columns_to_edit} with value: {autofill_value}") + return df # return immediately β†’ no need to edit + + # === CASE 2 & 3: configure editors === + for col in df.columns: + if col in columns_to_edit: + if dropdown_options and len(dropdown_options) > 1: + # dropdown editor + builder.configure_column( + col, + editable=True, + cellEditor="agSelectCellEditor", + cellEditorParams={"values": [""] + dropdown_options + ["NA"]}, + cellStyle=cell_style + ) + else: + # free text editor + builder.configure_column( + col, + editable=True, + cellEditor="agTextCellEditor", + cellStyle=cell_style + ) + else: + builder.configure_column(col, editable=False) + + builder.configure_grid_options( + enableRangeSelection=True, + enableFillHandle=True, + suppressMovableColumns=True, + singleClickEdit=True + ) + + gridOptions = builder.build() + + st.write(f"Fill in values for {columns_to_edit}. Use dropdown or fill handle. Click 'Update' in table to apply.") + + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, # must click Update button + data_return_mode=DataReturnMode.AS_INPUT, + fit_columns_on_grid_load=True + ) + + updated_df = grid_return["data"] + updated_df.replace("", np.nan, inplace=True) + + return updated_df + +def build_gridOptions_ontology_aggrid(df, columns_to_edit, dropdown_options): + """ + Builds GridOptions for ontology editing: + - if len(dropdown_options)==1 β†’ return autofill value (skip gridOptions) + - if len(dropdown_options)>1 β†’ dropdown editor + - if dropdown_options is None β†’ free text editor + Returns: + - gridOptions + - optional: autofill_value + """ + builder = GridOptionsBuilder.from_dataframe(df) + cell_style = {"background-color": "#ffa478"} + + # === CASE 1: autofill β†’ no editor + if dropdown_options and len(dropdown_options) == 1: + return None, dropdown_options[0] + + # === CASE 2 & 3: configure editable columns + for col in df.columns: + if col in columns_to_edit: + if dropdown_options and len(dropdown_options) > 1: + builder.configure_column( + col, + editable=True, + cellEditor="agSelectCellEditor", + cellEditorParams={"values": [""] + dropdown_options + ["NA"]}, + cellStyle=cell_style + ) + else: + builder.configure_column( + col, + editable=True, + cellEditor="agTextCellEditor", + cellStyle=cell_style + ) + else: + builder.configure_column(col, editable=False) + + builder.configure_grid_options( + enableRangeSelection=True, + enableFillHandle=True, + suppressMovableColumns=True, + singleClickEdit=True + ) + + gridOptions = builder.build() + + return gridOptions, None diff --git a/SDRF_CAPA-IVM.sdrf.tsv b/SDRF_CAPA-IVM.sdrf.tsv new file mode 100644 index 0000000..42f6f74 --- /dev/null +++ b/SDRF_CAPA-IVM.sdrf.tsv @@ -0,0 +1,45 @@ +source name characteristics[organism] characteristics[organism part] characteristics[biological replicate] characteristics[cell type] characteristics[developmental stage] characteristics[disease] assay name technology type comment[cleavage agent details] comment[data file] comment[fraction identifier] comment[fragment mass tolerance] comment[instrument] comment[label] comment[modification parameters] comment[modification parameters].1 comment[modification parameters].2 comment[precursor mass tolerance] comment[technical replicate] comment[tool metadata] +C1 Equus caballus oocyte 1 oocyte Not available Not applicable C1 proteomic profiling by mass spectrometry Trypsin/Lys-C T064333_AurEl8_PM8_CMB-1696_Control_rep1_3_BB4_1_11271.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 1 lesSDRF v0.1.0 +T1 Equus caballus oocyte 2 oocyte Not available Not applicable T1 proteomic profiling by mass spectrometry Trypsin/Lys-C T064335_AurEl8_PM8_CMB-1696_Treatment_rep1_13_BC5_1_11273.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 1 lesSDRF v0.1.0 +T2 Equus caballus oocyte 3 oocyte Not available Not applicable T2 proteomic profiling by mass spectrometry Trypsin/Lys-C T064337_AurEl8_PM8_CMB-1696_Treatment_rep1_10_BC2_1_11275.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 1 lesSDRF v0.1.0 +C2 Equus caballus oocyte 4 oocyte Not available Not applicable C2 proteomic profiling by mass spectrometry Trypsin/Lys-C T064339_AurEl8_PM8_CMB-1696_Control_rep1_4_BB5_1_11277.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 1 lesSDRF v0.1.0 +C3 Equus caballus oocyte 5 oocyte Not available Not applicable C3 proteomic profiling by mass spectrometry Trypsin/Lys-C T064341_AurEl8_PM8_CMB-1696_Control_rep1_5_BB6_1_11279.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 1 lesSDRF v0.1.0 +C4 Equus caballus oocyte 6 oocyte Not available Not applicable C4 proteomic profiling by mass spectrometry Trypsin/Lys-C T064347_AurEl8_PM8_CMB-1696_Control_rep1_9_BB10_1_11285.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 1 lesSDRF v0.1.0 +C5 Equus caballus oocyte 7 oocyte Not available Not applicable C5 proteomic profiling by mass spectrometry Trypsin/Lys-C T064351_AurEl8_PM8_CMB-1696_Control_rep1_6_BB7_1_11289.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 1 lesSDRF v0.1.0 +C6 Equus caballus oocyte 8 oocyte Not available Not applicable C6 proteomic profiling by mass spectrometry Trypsin/Lys-C T064355_AurEl8_PM8_CMB-1696_Control_rep1_7_BB8_1_11293.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 1 lesSDRF v0.1.0 +C7 Equus caballus oocyte 9 oocyte Not available Not applicable C7 proteomic profiling by mass spectrometry Trypsin/Lys-C T064357_AurEl8_PM8_CMB-1696_Control_rep1_8_BB9_1_11295.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 1 lesSDRF v0.1.0 +T3 Equus caballus oocyte 10 oocyte Not available Not applicable T3 proteomic profiling by mass spectrometry Trypsin/Lys-C T064359_AurEl8_PM8_CMB-1696_Treatment_rep1_12_BC4_1_11297.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 1 lesSDRF v0.1.0 +T4 Equus caballus oocyte 11 oocyte Not available Not applicable T4 proteomic profiling by mass spectrometry Trypsin/Lys-C T064363_AurEl8_PM8_CMB-1696_Treatment_rep1_15_BC7_1_11301.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 1 lesSDRF v0.1.0 +T5 Equus caballus oocyte 12 oocyte Not available Not applicable T5 proteomic profiling by mass spectrometry Trypsin/Lys-C T064365_AurEl8_PM8_CMB-1696_Treatment_rep2_27_BE4_1_11303.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +T6 Equus caballus oocyte 13 oocyte Not available Not applicable T6 proteomic profiling by mass spectrometry Trypsin/Lys-C T064367_AurEl8_PM8_CMB-1696_Treatment_rep2_30_BE7_1_11305.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +T7 Equus caballus oocyte 14 oocyte Not available Not applicable T7 proteomic profiling by mass spectrometry Trypsin/Lys-C T064369_AurEl8_PM8_CMB-1696_Treatment_rep2_28_BE5_1_11307.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +C8 Equus caballus oocyte 15 oocyte Not available Not applicable C8 proteomic profiling by mass spectrometry Trypsin/Lys-C T064371_AurEl8_PM8_CMB-1696_Control_rep2_19_BD4_1_11309.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +C9 Equus caballus oocyte 16 oocyte Not available Not applicable C9 proteomic profiling by mass spectrometry Trypsin/Lys-C T064375_AurEl8_PM8_CMB-1696_Control_rep2_17_BD2_1_11313.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +C10 Equus caballus oocyte 17 oocyte Not available Not applicable C10 proteomic profiling by mass spectrometry Trypsin/Lys-C T064377_AurEl8_PM8_CMB-1696_Control_rep2_20_BD5_1_11315.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +T8 Equus caballus oocyte 18 oocyte Not available Not applicable T8 proteomic profiling by mass spectrometry Trypsin/Lys-C T064401_AurEl8_PM8_CMB-1696_Treatment_rep3_47_BG8_1_11339.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +C11 Equus caballus oocyte 19 oocyte Not available Not applicable C11 proteomic profiling by mass spectrometry Trypsin/Lys-C T064403_AurEl8_PM8_CMB-1696_Control_rep3_37_BF6_1_11341.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +T9 Equus caballus oocyte 20 oocyte Not available Not applicable T9 proteomic profiling by mass spectrometry Trypsin/Lys-C T064405_AurEl8_PM8_CMB-1696_Treatment_rep3_46_BG7_1_11343.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +C12 Equus caballus oocyte 21 oocyte Not available Not applicable C12 proteomic profiling by mass spectrometry Trypsin/Lys-C T064411_AurEl8_PM8_CMB-1696_Control_rep3_40_BF9_1_11349.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +T10 Equus caballus oocyte 22 oocyte Not available Not applicable T10 proteomic profiling by mass spectrometry Trypsin/Lys-C T064415_AurEl8_PM8_CMB-1696_Treatment_rep3_50_BG11_1_11353.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +T11 Equus caballus oocyte 23 oocyte Not available Not applicable T11 proteomic profiling by mass spectrometry Trypsin/Lys-C T064417_AurEl8_PM8_CMB-1696_Treatment_rep3_41_BG2_1_11355.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +T12 Equus caballus oocyte 24 oocyte Not available Not applicable T12 proteomic profiling by mass spectrometry Trypsin/Lys-C T064425_AurEl8_PM8_CMB-1696_Treatment_rep3_42_BG3_1_11363.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +T13 Equus caballus oocyte 25 oocyte Not available Not applicable T13 proteomic profiling by mass spectrometry Trypsin/Lys-C T064427_AurEl8_PM8_CMB-1696_Treatment_rep3_45_BG6_1_11365.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +C13 Equus caballus oocyte 26 oocyte Not available Not applicable C13 proteomic profiling by mass spectrometry Trypsin/Lys-C T064379_AurEl8_PM8_CMB-1696_Control_rep2_22_BD7_1_11317.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +T14 Equus caballus oocyte 27 oocyte Not available Not applicable T14 proteomic profiling by mass spectrometry Trypsin/Lys-C T064381_AurEl8_PM8_CMB-1696_Treatment_rep2_29_BE6_1_11319.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +C14 Equus caballus oocyte 28 oocyte Not available Not applicable C14 proteomic profiling by mass spectrometry Trypsin/Lys-C T064383_AurEl8_PM8_CMB-1696_Control_rep2_21_BD6_1_11321.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +C15 Equus caballus oocyte 29 oocyte Not available Not applicable C15 proteomic profiling by mass spectrometry Trypsin/Lys-C T064385_AurEl8_PM8_CMB-1696_Control_rep2_24_BD9_1_11323.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +C16 Equus caballus oocyte 30 oocyte Not available Not applicable C16 proteomic profiling by mass spectrometry Trypsin/Lys-C T064387_AurEl8_PM8_CMB-1696_Control_rep2_18_BD3_1_11325.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +T15 Equus caballus oocyte 31 oocyte Not available Not applicable T15 proteomic profiling by mass spectrometry Trypsin/Lys-C T064389_AurEl8_PM8_CMB-1696_Treatment_rep2_25_BE2_1_11327.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +C17 Equus caballus oocyte 32 oocyte Not available Not applicable C17 proteomic profiling by mass spectrometry Trypsin/Lys-C T064391_AurEl8_PM8_CMB-1696_Control_rep2_23_BD8_1_11329.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +T16 Equus caballus oocyte 33 oocyte Not available Not applicable T16 proteomic profiling by mass spectrometry Trypsin/Lys-C T064393_AurEl8_PM8_CMB-1696_Treatment_rep2_31_BE8_1_11331.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 2 lesSDRF v0.1.0 +T17 Equus caballus oocyte 34 oocyte Not available Not applicable T17 proteomic profiling by mass spectrometry Trypsin/Lys-C T064397_AurEl8_PM8_CMB-1696_Treatment_rep3_49_BG10_1_11335.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +C18 Equus caballus oocyte 35 oocyte Not available Not applicable C18 proteomic profiling by mass spectrometry Trypsin/Lys-C T064429_AurEl8_PM8_CMB-1696_Control_rep3_39_BF8_1_11367.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +C19 Equus caballus oocyte 36 oocyte Not available Not applicable C19 proteomic profiling by mass spectrometry Trypsin/Lys-C T064407_AurEl8_PM8_CMB-1696_Control_rep3_35_BF4_1_11345.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +T18 Equus caballus oocyte 37 oocyte Not available Not applicable T18 proteomic profiling by mass spectrometry Trypsin/Lys-C T064419_AurEl8_PM8_CMB-1696_Treatment_rep3_48_BG9_1_11357.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +C20 Equus caballus oocyte 38 oocyte Not available Not applicable C20 proteomic profiling by mass spectrometry Trypsin/Lys-C T064421_AurEl8_PM8_CMB-1696_Control_rep3_33_BF2_1_11359.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +C21 Equus caballus oocyte 39 oocyte Not available Not applicable C21 proteomic profiling by mass spectrometry Trypsin/Lys-C T064423_AurEl8_PM8_CMB-1696_Control_rep3_38_BF7_1_11361.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +C22 Equus caballus oocyte 40 oocyte Not available Not applicable C22 proteomic profiling by mass spectrometry Trypsin/Lys-C T064431_AurEl8_PM8_CMB-1696_Control_rep3_34_BF3_1_11369.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +T19 Equus caballus oocyte 41 oocyte Not available Not applicable T19 proteomic profiling by mass spectrometry Trypsin/Lys-C T064433_AurEl8_PM8_CMB-1696_Treatment_rep3_51_BG12_1_11371.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +T20 Equus caballus oocyte 42 oocyte Not available Not applicable T20 proteomic profiling by mass spectrometry Trypsin/Lys-C T064399_AurEl8_PM8_CMB-1696_Treatment_rep3_44_BG5_1_11337.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +T21 Equus caballus oocyte 43 oocyte Not available Not applicable T21 proteomic profiling by mass spectrometry Trypsin/Lys-C T064409_AurEl8_PM8_CMB-1696_Treatment_rep3_43_BG4_1_11347.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 +C23 Equus caballus oocyte 44 oocyte Not available Not applicable C23 proteomic profiling by mass spectrometry Trypsin/Lys-C T064413_AurEl8_PM8_CMB-1696_Control_rep3_36_BF5_1_11351.d.zip 1 20 ppm timsTOF SCP label free sample NT=Oxidation; AC=35; MT=Variable; PP=Anywhere; TA=M NT=Met-loss; AC=765; MT=Variable; PP=Protein N-term; NT=Acetyl; AC=1; MT=Variable; PP=Protein N-term; 15 ppm 3 lesSDRF v0.1.0 diff --git a/__pycache__/ParsingModule.cpython-311.pyc b/__pycache__/ParsingModule.cpython-311.pyc index b5f678f..babbc21 100644 Binary files a/__pycache__/ParsingModule.cpython-311.pyc and b/__pycache__/ParsingModule.cpython-311.pyc differ diff --git a/__pycache__/common.cpython-311.pyc b/__pycache__/common.cpython-311.pyc new file mode 100644 index 0000000..61a0fed Binary files /dev/null and b/__pycache__/common.cpython-311.pyc differ diff --git a/pages/3_3. Required_columns.py b/archived_pages/3_3. Required_columns.py similarity index 94% rename from pages/3_3. Required_columns.py rename to archived_pages/3_3. Required_columns.py index 5583ca9..acf9c61 100644 --- a/pages/3_3. Required_columns.py +++ b/archived_pages/3_3. Required_columns.py @@ -13,6 +13,7 @@ from PIL import Image import base64 import io +import common st.set_page_config( page_title="Required columns", @@ -23,32 +24,11 @@ "Report a bug": "https://github.com/compomics/lesSDRF/issues", }, ) -def add_logo(logo_path, width, height): - """Read and return a resized logo""" - logo = Image.open(logo_path) - modified_logo = logo.resize((width, height)) - return modified_logo - -def get_base64_image(image): - img_buffer = io.BytesIO() - image.save(img_buffer, format="PNG") - img_str = base64.b64encode(img_buffer.getvalue()).decode() - return img_str - -my_logo = add_logo(logo_path="final_logo.png", width=149, height=58) - -st.markdown( - f""" - - """, - unsafe_allow_html=True, -) + + +import common +common.inject_sidebar_logo() + def update_session_state(df): st.session_state["template_df"] = df @@ -137,10 +117,20 @@ def clean_final_str(final_str): "The following columns are empty and required", empty_columns, help="If a column you're looking for is not in this display, This means it is not empty. Click on the 'undo column' button and empty your column of interest." ) - download = st.download_button("Press to download SDRF file",ParsingModule.convert_df(template_df), "intermediate_SDRF.sdrf.tsv", help="download your SDRF file") + if st.button("Validate SDRF file before download"): + # Perform validation or conversion + converted_data = ParsingModule.convert_df(template_df) + st.success("SDRF file validated! Ready to download.") + + st.download_button( + label="Download validated SDRF file", + data=converted_data, + file_name="intermediate_SDRF.sdrf.tsv", + mime="text/tab-separated-values" + ) + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") - if selection == 'start': st.write("""In the sidebar, all the empty columns that are required for you SDRF file are listed. Select the one you want to annotate first. When a column is filled in, it will disappear from the sidebar so you can keep track on which columns still require input. @@ -203,7 +193,7 @@ def clean_final_str(final_str): template_df.replace("empty", np.nan, inplace=True) st.success("The age column is in the correct format") update_session_state(template_df) - st.experimental_rerun() + st.rerun() if multiple == "No": age = st.text_input("Input the age of your sample in Y M D format e.g. 12Y 3M 4D", help="As you only have one age, the inputted age will be immediatly used to fill all cells in the age column") # Check if the age is in Y M D format or age range format @@ -216,11 +206,11 @@ def clean_final_str(final_str): st.write("The age is in the correct format") template_df["characteristics[age]"] = age update_session_state(template_df) - st.experimental_rerun() + st.rerun() if multiple == "Not available": template_df["characteristics[age]"] = "Not available" update_session_state(template_df) - st.experimental_rerun() + st.rerun() if selection == "comment[alkylation reagent]": st.subheader("Input the alkylation reagent that was used in your experiment") @@ -261,7 +251,7 @@ def clean_final_str(final_str): s = st.checkbox("Ready for input?") if s and len(enzymes) == 1: template_df[selection] = enzymes[0] - st.experimental_rerun() + st.rerun() if s: df = ParsingModule.fill_in_from_list(template_df, selection, enzymes) update_session_state(df) @@ -431,7 +421,7 @@ def clean_final_str(final_str): if sel == "No": template_df[selection] = 1 st.session_state["template_df"] = template_df - st.experimental_rerun() + st.rerun() if sel == "Yes": with col2: number = st.number_input("How many indiviuals are in your data?", min_value=0, step=1) @@ -444,7 +434,7 @@ def clean_final_str(final_str): if sel == "Not available": template_df[selection] = "Not available" st.session_state["template_df"] = template_df - st.experimental_rerun() + st.rerun() if selection == "comment[label]": @@ -636,14 +626,14 @@ def clean_final_str(final_str): if sel2 in ["F", "M", "unknown"]: template_df[selection] = sel2 st.session_state["template_df"] = template_df - st.experimental_rerun() + st.rerun() if sel == "Yes": df = ParsingModule.fill_in_from_list(template_df, "characteristics[sex]", ["F", "M", "unknown"]) update_session_state(df) if sel == "Not available": template_df[selection] = "Not available" st.session_state["template_df"] = template_df - st.experimental_rerun() + st.rerun() if selection == "comment[technical replicate]": col1, col2, col3 = st.columns(3) @@ -652,7 +642,7 @@ def clean_final_str(final_str): if sel == "No": template_df[selection] = 1 st.session_state["template_df"] = template_df - st.experimental_rerun() + st.rerun() if sel == "Yes": with col2: number = st.number_input("How many technical replicates are in your data?", min_value=0, step=1) @@ -672,7 +662,7 @@ def clean_final_str(final_str): if sel == "No": template_df[selection] = 1 st.session_state["template_df"] = template_df - st.experimental_rerun() + st.rerun() if sel == "Yes": with col2: number = st.number_input("How many biological replicates are there?", min_value=0, step=1) @@ -682,7 +672,7 @@ def clean_final_str(final_str): biol_rep = [*range(1, int(number) + 1, 1)] template_df = ParsingModule.fill_in_from_list(template_df, selection, biol_rep) st.session_state["template_df"] = template_df - #st.experimental_rerun() + #st.rerun() if selection == "comment[fragment mass tolerance]": st.subheader(""" Input the fragment mass tolerance and **the unit (ppm or Da)**. click Update twice when finished""") @@ -715,7 +705,7 @@ def clean_final_str(final_str): if depl == "No": template_df["comment[depletion]"] = "not depletion" st.session_state["template_df"] = template_df - st.experimental_rerun() + st.rerun() if selection == "comment[modification parameters]": st.write(""" First select the modifications that are in your sample using the drop down autocomplete menu. After selection you will need to choose the modification type, position and target amino acid. @@ -810,5 +800,5 @@ def clean_final_str(final_str): if st.button("Reannotate"): template_df[sel] = np.nan st.session_state["template_df"] = template_df - st.experimental_rerun() + st.rerun() diff --git a/pages/4_4. Additional_columns.py b/archived_pages/4_4. Additional_columns.py similarity index 95% rename from pages/4_4. Additional_columns.py rename to archived_pages/4_4. Additional_columns.py index 6b5f81a..ea5e6e1 100644 --- a/pages/4_4. Additional_columns.py +++ b/archived_pages/4_4. Additional_columns.py @@ -33,20 +33,24 @@ def get_base64_image(image): return img_str my_logo = add_logo(logo_path="final_logo.png", width=149, height=58) +encoded_logo = get_base64_image(my_logo) +# Inject logo at top of sidebar st.markdown( f""" """, - unsafe_allow_html=True, + unsafe_allow_html=True ) + def update_session_state(df): st.session_state["template_df"] = df @@ -113,7 +117,19 @@ def update_sidebar(df): side_bar_columns.append("undo column") with st.sidebar: selection = st.radio("These are all possible columns you may want to add:", side_bar_columns) - download = st.download_button("Press to download SDRF file",ParsingModule.convert_df(template_df), "intermediate_SDRF.sdrf.tsv", help="download your SDRF file") + + if st.button("Validate SDRF file before download"): + # Perform validation or conversion + converted_data = ParsingModule.convert_df(template_df) + st.success("SDRF file validated! Ready to download.") + + st.download_button( + label="Download validated SDRF file", + data=converted_data, + file_name="intermediate_SDRF.sdrf.tsv", + mime="text/tab-separated-values" + ) + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") diff --git a/common.py b/common.py new file mode 100644 index 0000000..321b675 --- /dev/null +++ b/common.py @@ -0,0 +1,43 @@ +# common.py +import streamlit as st +import ParsingModule +import pandas as pd +import numpy as np +import re +import warnings +warnings.filterwarnings("ignore") +from streamlit_tree_select import tree_select +from PIL import Image +import base64 +import io +import os + +def add_logo(logo_path="final_logo.png", width=149, height=58): + """Read and return a resized logo""" + logo = Image.open(logo_path) + modified_logo = logo.resize((width, height)) + return modified_logo + +def get_base64_image(image): + img_buffer = io.BytesIO() + image.save(img_buffer, format="PNG") + img_str = base64.b64encode(img_buffer.getvalue()).decode() + return img_str + +def inject_sidebar_logo(logo_path="final_logo.png", width=149, height=58): + my_logo = add_logo(logo_path, width, height) + encoded_logo = get_base64_image(my_logo) + + st.markdown( + f""" + + """, + unsafe_allow_html=True + ) diff --git a/data/all_organism_part_dict_elements.json.gz b/data/all_organism_part_dict_elements.json.gz index 706d96a..1ce39e1 100644 Binary files a/data/all_organism_part_dict_elements.json.gz and b/data/all_organism_part_dict_elements.json.gz differ diff --git a/data/organism_part_dict.json.gz b/data/organism_part_dict.json.gz index c45d5b1..8a80345 100644 Binary files a/data/organism_part_dict.json.gz and b/data/organism_part_dict.json.gz differ diff --git a/data/organism_part_dict_nodes.json.gz b/data/organism_part_dict_nodes.json.gz index eb05e04..ebf9534 100644 Binary files a/data/organism_part_dict_nodes.json.gz and b/data/organism_part_dict_nodes.json.gz differ diff --git a/ontobee.ipynb b/ontobee.ipynb new file mode 100644 index 0000000..c841b02 --- /dev/null +++ b/ontobee.ipynb @@ -0,0 +1,125 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 25, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "tandem mass spectrometer (OBI:0001088) - obi: ['A mass spectrometer in which ions are subjected to two or more sequential stages of analysis (which may be separated spatially or temporally) according to the quotient mass/charge.']\n" + ] + } + ], + "source": [ + "import requests\n", + "\n", + "supported_ontologies = [\n", + " 'cl', 'efo', 'hancestro', 'mco', 'ms', 'pride_cv', 'obi',\n", + " 'fbbt', 'po', 'clo', 'uberon', 'zfa', 'zfs', 'fbcv',\n", + " 'micro', 'panto', 'rs', 'chebi', 'mondo'\n", + "]\n", + "\n", + "def search_ols_term(term, exact=True):\n", + " url = \"https://www.ebi.ac.uk/ols4/api/search\"\n", + " params = {\n", + " \"q\": term,\n", + " \"type\": \"class\",\n", + " \"rows\": 100\n", + " }\n", + "\n", + " response = requests.get(url, params=params)\n", + " response.raise_for_status()\n", + " results = response.json()\n", + "\n", + " if results['response']['numFound'] == 0:\n", + " return []\n", + "\n", + " seen = set()\n", + " filtered = []\n", + " for doc in results['response']['docs']:\n", + " label = doc.get('label', '').strip().lower()\n", + " obo_id = doc.get('obo_id')\n", + " ontology = doc.get('ontology_name')\n", + " description = doc.get('description')\n", + "\n", + " if ontology not in supported_ontologies:\n", + " continue\n", + "\n", + " if exact and label != term.lower():\n", + " continue\n", + "\n", + " if obo_id and obo_id not in seen:\n", + " seen.add(obo_id)\n", + " filtered.append(doc)\n", + "\n", + " return filtered\n", + "\n", + "# Example usage\n", + "term_info = search_ols_term(\"tandem mass spectrometer\", exact=True)\n", + "for result in term_info:\n", + " print(f\"{result.get('label')} ({result.get('obo_id')}) - {result.get('ontology_name')}: {result.get('description')}\")\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [] + }, + { + "cell_type": "code", + "execution_count": 33, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "no children found\n" + ] + } + ], + "source": [ + "selected_onto = \"OBI:0001088\"\n", + "term = selected_onto.replace(':', '_')\n", + "onto = 'obi'\n", + "encoded_url = f\"https://www.ebi.ac.uk/ols4/api/ontologies/{onto}/terms/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252F{term}/hierarchicalChildren?lang=en\"\n", + "response = requests.get(encoded_url)\n", + "response.raise_for_status()\n", + "data = response.json()\n", + "#check if _embedded is in the data, then it can be parsed and checked for children\n", + "if '_embedded' in data:\n", + " for element_idx in range(len(data[\"_embedded\"]['terms'])):\n", + " label = data[\"_embedded\"]['terms'][element_idx]['label']\n", + " description = data[\"_embedded\"]['terms'][element_idx]['description'][0]\n", + " child_id = data[\"_embedded\"]['terms'][element_idx]['obo_id'][0]\n", + " print(label)\n", + "else:\n", + " print('no children found')" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "lessdrf-desktop", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.11.11" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/ontology/mco.obo b/ontology/mco.obo new file mode 100644 index 0000000..7a851ec --- /dev/null +++ b/ontology/mco.obo @@ -0,0 +1,53184 @@ +format-version: 1.2 +data-version: releases/2019-05-15 +ontology: mco +property_value: http://purl.obolibrary.org/obo/createdBy "Citlalli MejΓ­a Almonte\nVΓ­ctor TierrafrΓ­a\nManuel Camacho\nSocorro Castro Gama\nJulio Collado Vides" xsd:string +property_value: MCO:0000382 "" xsd:string +property_value: MCO:0000382 "Microbial Conditions Ontology contains terms to describe growth conditions in microbiological experiments. The first version is based on gene regulation experiments in Escherichia coli K-12. It is being used in RegulonDB to link growth conditions to gene regulation data." xsd:string +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\nDeclaration(AnnotationProperty())\n############################\n# Annotation Properties\n############################\n\n# Annotation Property: (BFO OWL specification label)\n\nSubAnnotationPropertyOf( rdfs:label)\n\n# Annotation Property: (BFO CLIF specification label)\n\nSubAnnotationPropertyOf( rdfs:label)\n\n\n\n############################\n# Classes\n############################\n\n# Class: (entity)\n\nSubClassOf( owl:Thing)\n\n# Class: (mco)\n\nSubClassOf( owl:Thing)\n\n# Class: (lysogenic mutant)\n\n\n# Class: (transposable element mutant)\n\n\n# Class: (knockin mutant)\n\n\n# Class: (Ξ»(soxR))\n\n\n# Class: (Ξ»(truncated soxR))\n\n\n# Class: (Ξ¦(soxR))\n\n\n# Class: (OD600 of 0.3)\n\n\n# Class: (OD600 from 0.4 to 0.5)\n\n\n# Class: (OD600 of 0.25)\n\n\n# Class: (OD600 of 1.5)\n\n\n# Class: (OD600 of 0.5)\n\n\n# Class: (OD600 below 0.7)\n\n\n# Class: (OD600 of 0.4)\n\n\n# Class: (OD600 from 0.4 to 0.6)\n\n\n# Class: (OD600 of 0.65)\n\n\n# Class: (greA overexpression mutant)\n\n\n# Class: (mlc knockout mutant)\n\n\n# Class: (nanR knockout mutant)\n\n\n# Class: (allS knockout mutant)\n\n\n# Class: (arcA knockout mutant)\n\n\n# Class: (cra knockout mutant)\n\n\n# Class: (crp knockout mutant)\n\n\n# Class: (cyaA knockout mutant)\n\n\n# Class: (fhlA knockout mutant)\n\n\n# Class: (fnr knockout mutant)\n\n\n# Class: (himA knockout mutant)\n\n\n# Class: (hydG knockout mutant)\n\n\n# Class: (iclR knockout mutant)\n\n\n# Class: (ihfB knockout mutant)\n\n\n# Class: (lrp knockout mutant)\n\n\n# Class: (bioA knockout mutant)\n\n\n# Class: (metC knockout mutant)\n\n\n# Class: (metE knockout mutant)\n\n\n# Class: (metR knockout mutant)\n\n\n# Class: (narL knockout mutant)\n\n\n# Class: (bioD knockout mutant)\n\n\n# Class: (oxyR knockout mutant)\n\n\n# Class: (pdhR knockout mutant)\n\n\n# Class: (relA knockout mutant)\n\n\n# Class: (rpoS knockout mutant)\n\n\n# Class: (rsd knockout mutant)\n\n\n# Class: (sdiA knockout mutant)\n\n\n# Class: (soxR knockout mutant)\n\n\n# Class: (soxS knockout mutant)\n\n\n# Class: (spoT knockout mutant)\n\n\n# Class: (yiaJ knockout mutant)\n\n\n# Class: (zntR knockout mutant)\n\n\n# Class: (znuA knockout mutant)\n\n\n# Class: (znuB knockout mutant)\n\n\n# Class: (marA knockout mutant)\n\n\n# Class: (pyrimidine limitation)\n\n\n# Class: (iron limitation)\n\n\n# Class: (carbon limitation)\n\n\n# Class: (nitrogen limitation)\n\n\n# Class: (phosphate limitation)\n\n\n# Class: (potassium limitation)\n\n\n# Class: (nlpE overexpression mutant)\n\n\n# Class: (ompC overexpression mutant)\n\n\n# Class: (ompF overexpression mutant)\n\n\n# Class: (ompX overexpression mutant)\n\n\n# Class: (rpoE overexpression mutant)\n\n\n# Class: (28.0 C)\n\n\n# Class: (30.0 C)\n\n\n# Class: (32.0 C)\n\n\n# Class: (37.0 C)\n\n\n# Class: (hydrogen peroxide 100 Β΅M)\n\n\n# Class: (hydrogen peroxide 120 Β΅M)\n\n\n# Class: (sodium chloride 0.35 M)\n\n\n# Class: (acetate 0.009%)\n\n\n# Class: (acetate 0.4%)\n\n\n# Class: (acetate 4 g/L)\n\n\n# Class: (acetate 50 mM)\n\n\n# Class: (glycerol 0.4%)\n\n\n# Class: (glycerol 1%)\n\n\n# Class: (nalidixic acid 160 Β΅M)\n\n\n# Class: (nitrate 50 mM)\n\n\n# Class: (OD650 of 0.2)\n\n\n# Class: (OD650 of 0.4)\n\n\n# Class: (OD650 of 0.5)\n\n\n# Class: (OD650 of 0.8)\n\n\n# Class: (OD650 from 0.5 to 0.7)\n\n\n# Class: (allR knockout mutant)\n\n\n# Class: (ο»ΏarsR knockout mutant)\n\n\n# Class: (pH 5.0)\n\n\n# Class: (pH 5.8)\n\n\n# Class: (pH 6.0)\n\n\n# Class: (pH 6.5)\n\n\n# Class: (pH 7.6)\n\n\n# Class: (lag phase)\n\n\n# Class: (acceleration phase)\n\n\n# Class: (exponential phase)\n\n\n# Class: (retardation phase)\n\n\n# Class: (stationary phase)\n\n\n# Class: (phase of decline)\n\n\n# Class: (early exponential phase)\n\n\n# Class: (early stationary phase)\n\n\n# Class: (early to mid exponential phase)\n\n\n# Class: (late exponential phase)\n\n\n# Class: (mid exponential phase)\n\n\n# Class: (mid to late exponential phase)\n\n\n# Class: (hydH knockout mutant)\n\n\n# Class: (leuO overexpression mutant)\n\n\n# Class: (marR knockout mutant)\n\n\n# Class: (marB knockout mutant)\n\n\n# Class: (nrdA knockout mutant)\n\n\n# Class: (nrdB knockout mutant)\n\n\n# Class: (growth rate of 0.08 h-1)\n\n\n# Class: (growth rate of 0.11 h-1)\n\n\n# Class: (growth rate of 0.1 h-1)\n\n\n# Class: (growth rate of 0.2 h-1)\n\n\n# Class: (growth rate of 0.21 h-1)\n\n\n# Class: (growth rate of 0.26 h-1)\n\n\n# Class: (growth rate of 0.29 h-1)\n\n\n# Class: (growth rate of 0.3 h-1)\n\n\n# Class: (growth rate of 0.31 h-1)\n\n\n# Class: (growth rate of 0.36 h-1)\n\n\n# Class: (growth rate of 0.39 h-1)\n\n\n# Class: (growth rate of 0.4 h-1)\n\n\n# Class: (growth rate of 0.46 h-1)\n\n\n# Class: (growth rate of 0.48 h-1)\n\n\n# Class: (growth rate of 0.6 h-1)\n\n\n# Class: (growth rate of 0.7 h-1)\n\n\n# Class: (butan-1-ol 0.8% vol/vol)\n\n\n# Class: (butan-1-ol 0.9% vol/vol)\n\n\n# Class: (butan-1-ol 1% vol/vol)\n\n\n# Class: (bicozamycin 100 mcg/ml)\n\n\n# Class: (bicozamycin 10 mcg/ml)\n\n\n# Class: (bicozamycin 25 mcg/ml)\n\n\n# Class: (hydrogen peroxide 0.01 mM)\n\n\n# Class: (nrdB overexpression mutant)\n\n\n# Class: (umuD overexpression mutant)\n\n\n# Class: (recA overexpression mutant)\n\n\n# Class: (cpxR overexpression mutant)\n\n\n# Class: (nupC overexpression mutant)\n\n\n# Class: (galF overexpression mutant)\n\n\n# Class: (accA overexpression mutant)\n\n\n# Class: (mcrB overexpression mutant)\n\n\n# Class: (menC overexpression mutant)\n\n\n# Class: (cspF overexpression mutant)\n\n\n# Class: (dpiA overexpression mutant)\n\n\n# Class: (accC overexpression mutant)\n\n\n# Class: (ruvA overexpression mutant)\n\n\n# Class: (minD overexpression mutant)\n\n\n# Class: (uspA overexpression mutant)\n\n\n# Class: (folA overexpression mutant)\n\n\n# Class: (hlpA overexpression mutant)\n\n\n# Class: (xylR overexpression mutant)\n\n\n# Class: (pyrC overexpression mutant)\n\n\n# Class: (ghoS overexpression mutant)\n\n\n# Class: (ihfB overexpression mutant)\n\n\n# Class: (yebF overexpression mutant)\n\n\n# Class: (fadR overexpression mutant)\n\n\n# Class: (dinP overexpression mutant)\n\n\n# Class: (nrdA overexpression mutant)\n\n\n# Class: (holD overexpression mutant)\n\n\n# Class: (fklB overexpression mutant)\n\n\n# Class: (rpoS overexpression mutant)\n\n\n# Class: (mqsR overexpression mutant)\n\n\n# Class: (gyrI overexpression mutant)\n\n\n# Class: (greB overexpression mutant)\n\n\n# Class: (mprA overexpression mutant)\n\n\n# Class: (dinI overexpression mutant)\n\n\n# Class: (relE overexpression mutant)\n\n\n# Class: (mqsA overexpression mutant)\n\n\n# Class: (rpoH overexpression mutant)\n\n\n# Class: (yoeB overexpression mutant)\n\n\n# Class: (rimI overexpression mutant)\n\n\n# Class: (gyrA overexpression mutant)\n\n\n# Class: (minE overexpression mutant)\n\n\n# Class: (rstB overexpression mutant)\n\n\n# Class: (mazF overexpression mutant)\n\n\n# Class: (dnaN overexpression mutant)\n\n\n# Class: (uvrA overexpression mutant)\n\n\n# Class: (dnaT overexpression mutant)\n\n\n# Class: (ldrA overexpression mutant)\n\n\n# Class: (ruvC overexpression mutant)\n\n\n# Class: (sulA overexpression mutant)\n\n\n# Class: (sdiA overexpression mutant)\n\n\n# Class: (gcvR overexpression mutant)\n\n\n# Class: (dnaA overexpression mutant)\n\n\n# Class: (hcaR overexpression mutant)\n\n\n# Class: (murI overexpression mutant)\n\n\n# Class: (bglJ overexpression mutant)\n\n\n# Class: (accD overexpression mutant)\n\n\n# Class: (yfjF overexpression mutant)\n\n\n# Class: (rraA overexpression mutant)\n\n\n# Class: (menB overexpression mutant)\n\n\n# Class: (hscA overexpression mutant)\n\n\n# Class: (accB overexpression mutant)\n\n\n# Class: (zipA overexpression mutant)\n\n\n# Class: (crcB overexpression mutant)\n\n\n# Class: (sbcB overexpression mutant)\n\n\n# Class: (mcrC overexpression mutant)\n\n\n# Class: (lexA overexpression mutant)\n\n\n# Class: (hydrogen peroxide 0.3mM)\n\n\n# Class: (aceE knockout mutant)\n\n\n# Class: (adiA knockout mutant)\n\n\n# Class: (appY knockout mutant)\n\n\n# Class: (argR knockout mutant)\n\n\n# Class: (cadA knockout mutant)\n\n\n# Class: (cadB knockout mutant)\n\n\n# Class: (cnu knockout mutant)\n\n\n# Class: (cpxA knockout mutant)\n\n\n# Class: (creB knockout mutant)\n\n\n# Class: (crl knockout mutant)\n\n\n# Class: (cueO knockout mutant)\n\n\n# Class: (cysB knockout mutant)\n\n\n# Class: (cysQ knockout mutant)\n\n\n# Class: (dam knockout mutant)\n\n\n# Class: (dksA knockout mutant)\n\n\n# Class: (dnaJ knockout mutant)\n\n\n# Class: (dppA knockout mutant)\n\n\n# Class: (dppB knockout mutant)\n\n\n# Class: (dppC knockout mutant)\n\n\n# Class: (dppD knockout mutant)\n\n\n# Class: (dppF knockout mutant)\n\n\n# Class: (eno knockout mutant)\n\n\n# Class: (fis knockout mutant)\n\n\n# Class: (flhC knockout mutant)\n\n\n# Class: (flhD knockout mutant)\n\n\n# Class: (fur knockout mutant)\n\n\n# Class: (gadB knockout mutant)\n\n\n# Class: (gadW knockout mutant)\n\n\n# Class: (gadX knockout mutant)\n\n\n# Class: (gcvP knockout mutant)\n\n\n# Class: (gcvT knockout mutant)\n\n\n# Class: (grxA knockout mutant)\n\n\n# Class: (gss knockout mutant)\n\n\n# Class: (hda knockout mutant)\n\n\n# Class: (hcaR knockout mutant)\n\n\n# Class: (hdeA knockout mutant)\n\n\n# Class: (hdeB knockout mutant)\n\n\n# Class: (hfq knockout mutant)\n\n\n# Class: (hha knockout mutant)\n\n\n# Class: (hmp knockout mutant)\n\n\n# Class: (hns knockout mutant)\n\n\n# Class: (hslJ knockout mutant)\n\n\n# Class: (ihfA knockout mutant)\n\n\n# Class: (iscR knockout mutant)\n\n\n# Class: (kdpE knockout mutant)\n\n\n# Class: (ldcC knockout mutant)\n\n\n# Class: (lexA knockout mutant)\n\n\n# Class: (lon knockout mutant)\n\n\n# Class: (lsrK knockout mutant)\n\n\n# Class: (lsrR knockout mutant)\n\n\n# Class: (luxS knockout mutant)\n\n\n# Class: (mazF knockout mutant)\n\n\n# Class: (melR knockout mutant)\n\n\n# Class: (metJ knockout mutant)\n\n\n# Class: (mgrR knockout mutant)\n\n\n# Class: (mnmE knockout mutant)\n\n\n# Class: (mntR knockout mutant)\n\n\n# Class: (mqsR knockout mutant)\n\n\n# Class: (mutS knockout mutant)\n\n\n# Class: (narP knockout mutant)\n\n\n# Class: (narX knockout mutant)\n\n\n# Class: (norR knockout mutant)\n\n\n# Class: (nusA knockout mutant)\n\n\n# Class: (nusG knockout mutant)\n\n\n# Class: (pgi knockout mutant)\n\n\n# Class: (phoB knockout mutant)\n\n\n# Class: (phoH knockout mutant)\n\n\n# Class: (phoP knockout mutant)\n\n\n# Class: (phoQ knockout mutant)\n\n\n# Class: (phoU knockout mutant)\n\n\n# Class: (pnp knockout mutant)\n\n\n# Class: (ppsA knockout mutant)\n\n\n# Class: (ptsN knockout mutant)\n\n\n# Class: (qor knockout mutant)\n\n\n# Class: (qseB knockout mutant)\n\n\n# Class: (qseC knockout mutant)\n\n\n# Class: (recA knockout mutant)\n\n\n# Class: (recE knockout mutant)\n\n\n# Class: (rhlB knockout mutant)\n\n\n# Class: (ribB knockout mutant)\n\n\n# Class: (rne knockout mutant)\n\n\n# Class: (rng knockout mutant)\n\n\n# Class: (rpoN knockout mutant)\n\n\n# Class: (rraA knockout mutant)\n\n\n# Class: (rseA knockout mutant)\n\n\n# Class: (rutR knockout mutant)\n\n\n# Class: (seqA knockout mutant)\n\n\n# Class: (sgrR knockout mutant)\n\n\n# Class: (sgrS knockout mutant)\n\n\n# Class: (speA knockout mutant)\n\n\n# Class: (speB knockout mutant)\n\n\n# Class: (speC knockout mutant)\n\n\n# Class: (speD knockout mutant)\n\n\n# Class: (speE knockout mutant)\n\n\n# Class: (speF knockout mutant)\n\n\n# Class: (spy knockout mutant)\n\n\n# Class: (stpA knockout mutant)\n\n\n# Class: (sucA knockout mutant)\n\n\n# Class: (sucB knockout mutant)\n\n\n# Class: (tnaA knockout mutant)\n\n\n# Class: (trpE knockout mutant)\n\n\n# Class: (trpR knockout mutant)\n\n\n# Class: (ubiE knockout mutant)\n\n\n# Class: (ycaD knockout mutant)\n\n\n# Class: (yceB knockout mutant)\n\n\n# Class: (yceP knockout mutant)\n\n\n# Class: (ycfR knockout mutant)\n\n\n# Class: (ychH knockout mutant)\n\n\n# Class: (ydcR knockout mutant)\n\n\n# Class: (ygiN knockout mutant)\n\n\n# Class: (ygiW knockout mutant)\n\n\n# Class: (yjbJ knockout mutant)\n\n\n# Class: (yjiR knockout mutant)\n\n\n# Class: (yliH knockout mutant)\n\n\n# Class: (ymgB knockout mutant)\n\n\n# Class: (yncC knockout mutant)\n\n\n# Class: (yqhC knockout mutant)\n\n\n# Class: (cobB knockout mutant)\n\n\n# Class: (nsrR knockout mutant)\n\n\n# Class: (patZ knockout mutant)\n\n\n# Class: (mazE knockout mutant)\n\n\n# Class: (bdcA knockout mutant)\n\n\n# Class: (ybjN knockout mutant)\n\n\n# Class: (yjjP knockout mutant)\n\n\n# Class: (bglJ knockout mutant)\n\n\n# Class: (trpA knockout mutant)\n\n\n# Class: (yjjQ knockout mutant)\n\n\n# Class: (rcsB knockout mutant)\n\n\n# Class: (rimO knockout mutant)\n\n\n# Class: (pflB knockout mutant)\n\n\n# Class: (ycaO knockout mutant)\n\n\n# Class: (ldhA knockout mutant)\n\n\n# Class: (leuO knockout mutant)\n\n\n# Class: (hydrogen peroxide 1 mM)\n\n\n# Class: (OD600 of 0.03)\n\n\n# Class: (OD600 of 0.05)\n\n\n# Class: (OD600 of 0.1)\n\n\n# Class: (OD600 of 0.15)\n\n\n# Class: (OD600 of 0.2)\n\n\n# Class: (OD600 of 0.35)\n\n\n# Class: (OD600 of 0.6)\n\n\n# Class: (OD600 of 0.7)\n\n\n# Class: (OD600 of 0.8)\n\n\n# Class: (OD600 of 0.9)\n\n\n# Class: (OD600 of 0.95)\n\n\n# Class: (OD600 of 1.0)\n\n\n# Class: (OD600 of 1.1)\n\n\n# Class: (OD600 of 1.6)\n\n\n# Class: (OD600 of 1.7)\n\n\n# Class: (OD600 of 10)\n\n\n# Class: (OD600 of 15)\n\n\n# Class: (OD600 of 2)\n\n\n# Class: (OD600 of 2.4)\n\n\n# Class: (OD600 of 4)\n\n\n# Class: (OD600 of 1.3)\n\n\n# Class: (OD600 of 2.7)\n\n\n# Class: (OD600 of 4.5)\n\n\n# Class: (OD600 of 4.7)\n\n\n# Class: (OD600 of 4.8)\n\n\n# Class: (20.0 C)\n\n\n# Class: (25.0 C)\n\n\n# Class: (26.0 C)\n\n\n# Class: (33.0 C)\n\n\n# Class: (34.0 C)\n\n\n# Class: (35.7 C)\n\n\n# Class: (23.0 C)\n\n\n# Class: (16.0 C)\n\n\n# Class: (15.0 C)\n\n\n# Class: (hydrogen peroxide 2mM)\n\n\n# Class: (pH 5.5)\n\n\n# Class: (pH 4.5)\n\n\n# Class: (pH 5.7)\n\n\n# Class: (pH 8.5)\n\n\n# Class: (pH 8.7)\n\n\n# Class: (pH 11.8)\n\n\n# Class: (pH 3.5)\n\n\n# Class: (pH 5.3)\n\n\n# Class: (pH 7.4)\n\n\n# Class: (hydrogen peroxide 5.88mM)\n\n\n# Class: (hydrogen peroxide 10mM)\n\n\n# Class: (hydrogen peroxide 20mM)\n\n\n# Class: (hydrogen peroxide 30mM)\n\n\n# Class: (acetate 2 g/L)\n\n\n# Class: (ethanol 1.5% vol/vol)\n\n\n# Class: (ethanol 15% vol/vol)\n\n\n# Class: (ethanol 2% vol/vol)\n\n\n# Class: (ethanol 20% vol/vol)\n\n\n# Class: (ethanol 3% vol/vol)\n\n\n# Class: (ethanol 4% vol/vol)\n\n\n# Class: (glycerol 0.001 g/L)\n\n\n# Class: (glycerol 0.1 g/L)\n\n\n# Class: (glycerol 0.4 g/L)\n\n\n# Class: (glycerol 0.68 g/L)\n\n\n# Class: (glycerol 1 g/L)\n\n\n# Class: (glycerol 2 g/L)\n\n\n# Class: (glycerol 4 g/L)\n\n\n# Class: (indole 0.1mM)\n\n\n# Class: (indole 0.5M)\n\n\n# Class: (indole 1 mM)\n\n\n# Class: (nalidixic acid 10Β΅g/ml)\n\n\n# Class: (nalidixic acid 100Β΅g/ml)\n\n\n# Class: (nitrate 0.01 M)\n\n\n# Class: (nitrate 0.02 M)\n\n\n# Class: (norfloxacin 0.025 Β΅g/ml)\n\n\n# Class: (norfloxacin 0.05 Β΅g/ml)\n\n\n# Class: (norfloxacin 0.075 Β΅g/ml)\n\n\n# Class: (norfloxacin 1 Β΅g/mL)\n\n\n# Class: (norfloxacin 2.5 Β΅g/ml)\n\n\n# Class: (sodium chloride 0.3 M)\n\n\n# Class: (sodium chloride 0.55 M)\n\n\n# Class: (sodium chloride 1 M)\n\n\n# Class: (sodium chloride 1.37 M)\n\n\n# Class: (sodium chloride 2 M)\n\n\n# Class: (sodium chloride 3.5 M)\n\n\n# Class: (sodium chloride 4 M)\n\n\n# Class: (sodium chloride 4.5 M)\n\n\n# Class: (sodium chloride 5.5 M)\n\n\n# Class: (sodium chloride 5 M)\n\n\n# Class: (sodium chloride 10 M)\n\n\n# Class: (OD650 from 0.3 to 0.4)\n\n\n# Class: (OD650 from 0.3 to 0.5)\n\n\n# Class: (OD650 from 0.3 to 0.6)\n\n\n# Class: (altered growth rate)\n\n\n# Class: (increased temperature)\n\n\n# Class: (decreased temperature)\n\n\n\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nDisjointClasses( )\nAnnotationAssertion(rdfs:comment \"\")\nAnnotationAssertion( \"EO:0001036\"^^xsd:string)\nAnnotationAssertion( \"EO:0001037\"^^xsd:string)\nAnnotationAssertion( \"EO:0001038\"^^xsd:string)\nAnnotationAssertion( \"EO:0007178\"^^xsd:string)\n) + +[Term] +id: BFO:0000001 +name: entity +property_value: BFO:0000179 "entity" xsd:string +property_value: BFO:0000180 "Entity" xsd:string +property_value: editor_note "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called β€˜specializations’ in [81" xsd:string +property_value: editor_note "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000004", comment="per discussion with Barry Smith", http://www.w3.org/2000/01/rdf-schema#seeAlso="http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"} +property_value: IAO:0000112 "Julius Caesar" xsd:string +property_value: IAO:0000112 "the Second World War" xsd:string +property_value: IAO:0000112 "Verdi’s Requiem" xsd:string +property_value: IAO:0000112 "your body mass index" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/bfo.owl +property_value: IAO:0000600 "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/001-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000002 +name: continuant +def: "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." [] +is_a: BFO:0000001 ! entity +disjoint_from: BFO:0000003 ! occurrent +property_value: BFO:0000179 "continuant" xsd:string +property_value: BFO:0000180 "Continuant" xsd:string +property_value: editor_note "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. β€˜My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240" xsd:string +property_value: editor_note "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000007"} +property_value: IAO:0000412 http://purl.obolibrary.org/obo/bfo.owl +property_value: IAO:0000600 "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/008-002"} +property_value: IAO:0000601 "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/126-001"} +property_value: IAO:0000601 "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/009-002"} +property_value: IAO:0000601 "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/011-002"} +property_value: IAO:0000602 "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/009-002"} +property_value: IAO:0000602 "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/126-001"} +property_value: IAO:0000602 "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/008-002"} +property_value: IAO:0000602 "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/011-002"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000003 +name: occurrent +is_a: BFO:0000001 ! entity +property_value: BFO:0000179 "occurrent" xsd:string +property_value: BFO:0000180 "Occurrent" xsd:string +property_value: editor_note "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region" xsd:string +property_value: editor_note "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players." xsd:string +property_value: editor_note "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process." xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000006", comment="per discussion with Barry Smith"} +property_value: editor_note "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame." xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000012"} +property_value: IAO:0000412 http://purl.obolibrary.org/obo/bfo.owl +property_value: IAO:0000600 "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/077-002"} +property_value: IAO:0000601 "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/079-001"} +property_value: IAO:0000601 "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/108-001"} +property_value: IAO:0000602 "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/108-001"} +property_value: IAO:0000602 "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/079-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000004 +name: independent continuant +def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." [] +def: "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"} +is_a: BFO:0000002 ! continuant +disjoint_from: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000031 ! generically dependent continuant +property_value: BFO:0000179 "ic" xsd:string +property_value: BFO:0000180 "IndependentContinuant" xsd:string +property_value: IAO:0000112 "a chair" xsd:string +property_value: IAO:0000112 "a heart" xsd:string +property_value: IAO:0000112 "a leg" xsd:string +property_value: IAO:0000112 "a molecule" xsd:string +property_value: IAO:0000112 "a spatial region" xsd:string +property_value: IAO:0000112 "an atom" xsd:string +property_value: IAO:0000112 "an orchestra." xsd:string +property_value: IAO:0000112 "an organism" xsd:string +property_value: IAO:0000112 "the bottom right portion of a human torso" xsd:string +property_value: IAO:0000112 "the interior of your mouth" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/bfo.owl +property_value: IAO:0000601 "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/134-001"} +property_value: IAO:0000601 "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/018-002"} +property_value: IAO:0000602 "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/018-002"} +property_value: IAO:0000602 "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/134-001"} +property_value: IAO:0000602 "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000006 +name: spatial region +is_a: BFO:0000141 ! immaterial entity +disjoint_from: BFO:0000029 ! site +disjoint_from: BFO:0000140 ! continuant fiat boundary +property_value: BFO:0000179 "s-region" xsd:string +property_value: BFO:0000180 "SpatialRegion" xsd:string +property_value: editor_note "BFO 2 Reference: Spatial regions do not participate in processes." xsd:string +property_value: editor_note "Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional." xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000002", comment="per discussion with Barry Smith"} +property_value: IAO:0000600 "A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/035-001"} +property_value: IAO:0000601 "All continuant parts of spatial regions are spatial regions.Β (axiom label in BFO2 Reference: [036-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/036-001"} +property_value: IAO:0000602 "(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/036-001"} +property_value: IAO:0000602 "(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/035-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000008 +name: temporal region +is_a: BFO:0000003 ! occurrent +disjoint_from: BFO:0000011 ! spatiotemporal region +disjoint_from: BFO:0000015 ! process +disjoint_from: BFO:0000035 ! process boundary +property_value: BFO:0000179 "t-region" xsd:string +property_value: BFO:0000180 "TemporalRegion" xsd:string +property_value: editor_note "Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000003", comment="per discussion with Barry Smith"} +property_value: IAO:0000600 "A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/100-001"} +property_value: IAO:0000601 "All parts of temporal regions are temporal regions.Β (axiom label in BFO2 Reference: [101-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/101-001"} +property_value: IAO:0000601 "Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/119-002"} +property_value: IAO:0000602 "(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/119-002"} +property_value: IAO:0000602 "(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/101-001"} +property_value: IAO:0000602 "(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/100-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000009 +name: two-dimensional spatial region +is_a: BFO:0000006 ! spatial region +disjoint_from: BFO:0000028 ! three-dimensional spatial region +property_value: BFO:0000179 "2d-s-region" xsd:string +property_value: BFO:0000180 "TwoDimensionalSpatialRegion" xsd:string +property_value: IAO:0000112 "an infinitely thin plane in space." xsd:string +property_value: IAO:0000112 "the surface of a sphere-shaped part of space" xsd:string +property_value: IAO:0000600 "A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/039-001"} +property_value: IAO:0000602 "(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/039-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000011 +name: spatiotemporal region +is_a: BFO:0000003 ! occurrent +property_value: BFO:0000179 "st-region" xsd:string +property_value: BFO:0000180 "SpatiotemporalRegion" xsd:string +property_value: IAO:0000112 "the spatiotemporal region occupied by a human life" xsd:string +property_value: IAO:0000112 "the spatiotemporal region occupied by a process of cellular meiosis." xsd:string +property_value: IAO:0000112 "the spatiotemporal region occupied by the development of a cancer tumor" xsd:string +property_value: IAO:0000600 "A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/095-001"} +property_value: IAO:0000601 "All parts of spatiotemporal regions are spatiotemporal regions.Β (axiom label in BFO2 Reference: [096-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/096-001"} +property_value: IAO:0000601 "Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/099-001"} +property_value: IAO:0000601 "Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/098-001"} +property_value: IAO:0000601 "Every spatiotemporal region occupies_spatiotemporal_region itself." xsd:string +property_value: IAO:0000601 "Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/107-002"} +property_value: IAO:0000602 "(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/107-002"} +property_value: IAO:0000602 "(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/099-001"} +property_value: IAO:0000602 "(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/096-001"} +property_value: IAO:0000602 "(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/098-001"} +property_value: IAO:0000602 "(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/095-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000015 +name: process +def: "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"} +is_a: BFO:0000003 ! occurrent +property_value: BFO:0000179 "process" xsd:string +property_value: BFO:0000180 "Process" xsd:string +property_value: editor_note "BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of β€˜object’. In BFO 1.0 β€˜process’ served as such a counterpart. In BFO 2.0 β€˜process’ is, rather, the occurrent counterpart of β€˜material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)" xsd:string +property_value: IAO:0000112 "a process of cell-division, \\ a beating of the heart" xsd:string +property_value: IAO:0000112 "a process of meiosis" xsd:string +property_value: IAO:0000112 "a process of sleeping" xsd:string +property_value: IAO:0000112 "the course of a disease" xsd:string +property_value: IAO:0000112 "the flight of a bird" xsd:string +property_value: IAO:0000112 "the life of an organism" xsd:string +property_value: IAO:0000112 "your process of aging." xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/bfo.owl +property_value: IAO:0000602 "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000016 +name: disposition +is_a: BFO:0000017 ! realizable entity +property_value: BFO:0000179 "disposition" xsd:string +property_value: BFO:0000180 "Disposition" xsd:string +property_value: editor_note "BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type." xsd:string +property_value: IAO:0000112 "an atom of element X has the disposition to decay to an atom of element Y" xsd:string +property_value: IAO:0000112 "certain people have a predisposition to colon cancer" xsd:string +property_value: IAO:0000112 "children are innately disposed to categorize objects in certain ways." xsd:string +property_value: IAO:0000112 "the cell wall is disposed to filter chemicals in endocytosis and exocytosis" xsd:string +property_value: IAO:0000600 "b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/062-002"} +property_value: IAO:0000601 "If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/063-002"} +property_value: IAO:0000602 "(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/063-002"} +property_value: IAO:0000602 "(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/062-002"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000017 +name: realizable entity +is_a: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000019 ! quality +property_value: BFO:0000179 "realizable" xsd:string +property_value: BFO:0000180 "RealizableEntity" xsd:string +property_value: IAO:0000112 "the disposition of this piece of metal to conduct electricity." xsd:string +property_value: IAO:0000112 "the disposition of your blood to coagulate" xsd:string +property_value: IAO:0000112 "the function of your reproductive organs" xsd:string +property_value: IAO:0000112 "the role of being a doctor" xsd:string +property_value: IAO:0000112 "the role of this boundary to delineate where Utah and Colorado meet" xsd:string +property_value: IAO:0000600 "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/058-002"} +property_value: IAO:0000601 "All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/060-002"} +property_value: IAO:0000602 "(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/060-002"} +property_value: IAO:0000602 "(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/058-002"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000018 +name: zero-dimensional spatial region +is_a: BFO:0000006 ! spatial region +disjoint_from: BFO:0000028 ! three-dimensional spatial region +property_value: BFO:0000179 "0d-s-region" xsd:string +property_value: BFO:0000180 "ZeroDimensionalSpatialRegion" xsd:string +property_value: IAO:0000600 "A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/037-001"} +property_value: IAO:0000602 "(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/037-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000019 +name: quality +is_a: BFO:0000020 ! specifically dependent continuant +property_value: BFO:0000179 "quality" xsd:string +property_value: BFO:0000180 "Quality" xsd:string +property_value: IAO:0000112 "the ambient temperature of this portion of air" xsd:string +property_value: IAO:0000112 "the color of a tomato" xsd:string +property_value: IAO:0000112 "the length of the circumference of your waist" xsd:string +property_value: IAO:0000112 "the mass of this piece of gold." xsd:string +property_value: IAO:0000112 "the shape of your nose" xsd:string +property_value: IAO:0000112 "the shape of your nostril" xsd:string +property_value: IAO:0000600 "a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/055-001"} +property_value: IAO:0000601 "If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/105-001"} +property_value: IAO:0000602 "(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/105-001"} +property_value: IAO:0000602 "(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/055-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000020 +name: specifically dependent continuant +def: "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/050-003"} +is_a: BFO:0000002 ! continuant +property_value: BFO:0000179 "sdc" xsd:string +property_value: BFO:0000180 "SpecificallyDependentContinuant" xsd:string +property_value: editor_note "Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc." xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000005", comment="per discussion with Barry Smith"} +property_value: IAO:0000112 "of one-sided specifically dependent continuants: the mass of this tomato" xsd:string +property_value: IAO:0000112 "of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates." xsd:string +property_value: IAO:0000112 "Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key" xsd:string +property_value: IAO:0000112 "the disposition of this fish to decay" xsd:string +property_value: IAO:0000112 "the function of this heart: to pump blood" xsd:string +property_value: IAO:0000112 "the mutual dependence of proton donors and acceptors in chemical reactions [79" xsd:string +property_value: IAO:0000112 "the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction" xsd:string +property_value: IAO:0000112 "the pink color of a medium rare piece of grilled filet mignon at its center" xsd:string +property_value: IAO:0000112 "the role of being a doctor" xsd:string +property_value: IAO:0000112 "the shape of this hole." xsd:string +property_value: IAO:0000112 "the smell of this portion of mozzarella" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/bfo.owl +property_value: IAO:0000602 "(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/050-003"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000024 +name: fiat object part +is_a: BFO:0000040 ! material entity +property_value: BFO:0000179 "fiat-object-part" xsd:string +property_value: BFO:0000180 "FiatObjectPart" xsd:string +property_value: editor_note "BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions" xsd:string +property_value: IAO:0000112 "or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29" xsd:string +property_value: IAO:0000112 "the division of the brain into regions" xsd:string +property_value: IAO:0000112 "the division of the planet into hemispheres" xsd:string +property_value: IAO:0000112 "the dorsal and ventral surfaces of the body" xsd:string +property_value: IAO:0000112 "the FMA:regional parts of an intact human body." xsd:string +property_value: IAO:0000112 "the upper and lower lobes of the left lung" xsd:string +property_value: IAO:0000112 "the Western hemisphere of the Earth" xsd:string +property_value: IAO:0000600 "b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/027-004"} +property_value: IAO:0000602 "(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/027-004"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000026 +name: one-dimensional spatial region +is_a: BFO:0000006 ! spatial region +disjoint_from: BFO:0000028 ! three-dimensional spatial region +property_value: BFO:0000179 "1d-s-region" xsd:string +property_value: BFO:0000180 "OneDimensionalSpatialRegion" xsd:string +property_value: IAO:0000112 "an edge of a cube-shaped portion of space." xsd:string +property_value: IAO:0000600 "A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/038-001"} +property_value: IAO:0000602 "(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/038-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000027 +name: object aggregate +is_a: BFO:0000040 ! material entity +property_value: BFO:0000179 "object-aggregate" xsd:string +property_value: BFO:0000180 "ObjectAggregate" xsd:string +property_value: editor_note "An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000301"} +property_value: editor_note "An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000011"} +property_value: editor_note "BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee)." xsd:string +property_value: IAO:0000112 "a collection of cells in a blood biobank." xsd:string +property_value: IAO:0000112 "a swarm of bees is an aggregate of members who are linked together through natural bonds" xsd:string +property_value: IAO:0000112 "a symphony orchestra" xsd:string +property_value: IAO:0000112 "an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)" xsd:string +property_value: IAO:0000112 "defined by fiat: the aggregate of members of an organization" xsd:string +property_value: IAO:0000112 "defined through physical attachment: the aggregate of atoms in a lump of granite" xsd:string +property_value: IAO:0000112 "defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container" xsd:string +property_value: IAO:0000112 "defined via attributive delimitations such as: the patients in this hospital" xsd:string +property_value: IAO:0000112 "the aggregate of bearings in a constant velocity axle joint" xsd:string +property_value: IAO:0000112 "the aggregate of blood cells in your body" xsd:string +property_value: IAO:0000112 "the nitrogen atoms in the atmosphere" xsd:string +property_value: IAO:0000112 "the restaurants in Palo Alto" xsd:string +property_value: IAO:0000112 "your collection of Meissen ceramic plates." xsd:string +property_value: IAO:0000119 "ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158." xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000300"} +property_value: IAO:0000600 "b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/025-004"} +property_value: IAO:0000602 "(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/025-004"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000028 +name: three-dimensional spatial region +is_a: BFO:0000006 ! spatial region +property_value: BFO:0000179 "3d-s-region" xsd:string +property_value: BFO:0000180 "ThreeDimensionalSpatialRegion" xsd:string +property_value: IAO:0000112 "a cube-shaped region of space" xsd:string +property_value: IAO:0000112 "a sphere-shaped region of space," xsd:string +property_value: IAO:0000600 "A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/040-001"} +property_value: IAO:0000602 "(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/040-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000029 +name: site +is_a: BFO:0000141 ! immaterial entity +property_value: BFO:0000179 "site" xsd:string +property_value: BFO:0000180 "Site" xsd:string +property_value: IAO:0000112 "a hole in the interior of a portion of cheese" xsd:string +property_value: IAO:0000112 "a rabbit hole" xsd:string +property_value: IAO:0000112 "an air traffic control region defined in the airspace above an airport" xsd:string +property_value: IAO:0000112 "Manhattan Canyon)" xsd:string +property_value: IAO:0000112 "the cockpit of an aircraft" xsd:string +property_value: IAO:0000112 "the Grand Canyon" xsd:string +property_value: IAO:0000112 "the hold of a ship" xsd:string +property_value: IAO:0000112 "the interior of a kangaroo pouch" xsd:string +property_value: IAO:0000112 "the interior of the trunk of your car" xsd:string +property_value: IAO:0000112 "the interior of your bedroom" xsd:string +property_value: IAO:0000112 "the interior of your office" xsd:string +property_value: IAO:0000112 "the interior of your refrigerator" xsd:string +property_value: IAO:0000112 "the lumen of your gut" xsd:string +property_value: IAO:0000112 "the Piazza San Marco" xsd:string +property_value: IAO:0000112 "your left nostril (a fiat part – the opening – of your left nasal cavity)" xsd:string +property_value: IAO:0000600 "b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/034-002"} +property_value: IAO:0000602 "(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/034-002"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000030 +name: object +is_a: BFO:0000040 ! material entity +property_value: BFO:0000179 "object" xsd:string +property_value: BFO:0000180 "Object" xsd:string +property_value: editor_note "BFO 2 Reference: an object is a maximal causally unified material entity" xsd:string +property_value: editor_note "BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called β€˜populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as β€˜molecule’ or β€˜planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting." xsd:string +property_value: editor_note "BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below)." xsd:string +property_value: editor_note "BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47" xsd:string +property_value: editor_note "BFO 2 Reference: β€˜objects’ are sometimes referred to as β€˜grains’ [74" xsd:string +property_value: IAO:0000112 "atom" xsd:string +property_value: IAO:0000112 "cell" xsd:string +property_value: IAO:0000112 "cells and organisms" xsd:string +property_value: IAO:0000112 "engineered artifacts" xsd:string +property_value: IAO:0000112 "grain of sand" xsd:string +property_value: IAO:0000112 "molecule" xsd:string +property_value: IAO:0000112 "organelle" xsd:string +property_value: IAO:0000112 "organism" xsd:string +property_value: IAO:0000112 "planet" xsd:string +property_value: IAO:0000112 "solid portions of matter" xsd:string +property_value: IAO:0000112 "star" xsd:string +property_value: IAO:0000600 "b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/024-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000031 +name: generically dependent continuant +def: "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/074-001"} +is_a: BFO:0000002 ! continuant +property_value: BFO:0000179 "gdc" xsd:string +property_value: BFO:0000180 "GenericallyDependentContinuant" xsd:string +property_value: IAO:0000112 "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity." xsd:string +property_value: IAO:0000112 "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop" xsd:string +property_value: IAO:0000112 "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule." xsd:string +property_value: IAO:0000602 "(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/074-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000034 +name: function +is_a: BFO:0000016 ! disposition +property_value: BFO:0000179 "function" xsd:string +property_value: BFO:0000180 "Function" xsd:string +property_value: editor_note "BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc." xsd:string +property_value: IAO:0000112 "the function of a hammer to drive in nails" xsd:string +property_value: IAO:0000112 "the function of a heart pacemaker to regulate the beating of a heart through electricity" xsd:string +property_value: IAO:0000112 "the function of amylase in saliva to break down starch into sugar" xsd:string +property_value: IAO:0000600 "A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/064-001"} +property_value: IAO:0000602 "(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/064-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000035 +name: process boundary +def: "p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/084-001"} +is_a: BFO:0000003 ! occurrent +property_value: BFO:0000179 "p-boundary" xsd:string +property_value: BFO:0000180 "ProcessBoundary" xsd:string +property_value: IAO:0000112 "the boundary between the 2nd and 3rd year of your life." xsd:string +property_value: IAO:0000601 "Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/085-002"} +property_value: IAO:0000602 "(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/085-002"} +property_value: IAO:0000602 "(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/084-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000038 +name: one-dimensional temporal region +is_a: BFO:0000008 ! temporal region +disjoint_from: BFO:0000148 ! zero-dimensional temporal region +property_value: BFO:0000179 "1d-t-region" xsd:string +property_value: BFO:0000180 "OneDimensionalTemporalRegion" xsd:string +property_value: editor_note "BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks)." xsd:string +property_value: IAO:0000112 "the temporal region during which a process occurs." xsd:string +property_value: IAO:0000600 "A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/103-001"} +property_value: IAO:0000602 "(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/103-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000040 +name: material entity +def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." [] +def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." [] +is_a: BFO:0000004 ! independent continuant +disjoint_from: BFO:0000141 ! immaterial entity +property_value: BFO:0000179 "material" xsd:string +property_value: BFO:0000180 "MaterialEntity" xsd:string +property_value: editor_note "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60" xsd:string +property_value: editor_note "BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity." xsd:string +property_value: editor_note "BFO 2 Reference: β€˜Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or β€˜lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here." xsd:string +property_value: editor_note "Examples: collection of random bacteria, a chair, dorsal surface of the body" xsd:string +property_value: editor_note "Material entity [snap:MaterialEntity] subsumes object [snap:Object], fiat object part [snap:FiatObjectPart], and object aggregate [snap:ObjectAggregate], which assume a three level theory of granularity, which is inadequate for some domains, such as biology." xsd:string +property_value: IAO:0000111 "material entity" xsd:string +property_value: IAO:0000112 "a flame" xsd:string +property_value: IAO:0000112 "a forest fire" xsd:string +property_value: IAO:0000112 "a human being" xsd:string +property_value: IAO:0000112 "a hurricane" xsd:string +property_value: IAO:0000112 "a photon" xsd:string +property_value: IAO:0000112 "a puff of smoke" xsd:string +property_value: IAO:0000112 "a sea wave" xsd:string +property_value: IAO:0000112 "a tornado" xsd:string +property_value: IAO:0000112 "an aggregate of human beings." xsd:string +property_value: IAO:0000112 "an energy wave" xsd:string +property_value: IAO:0000112 "an epidemic" xsd:string +property_value: IAO:0000112 "the undetached arm of a human being" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/envo.owl +property_value: IAO:0000412 http://purl.obolibrary.org/obo/ido.owl +property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi/webService.owl +property_value: IAO:0000600 "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/019-002"} +property_value: IAO:0000601 "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/021-002"} +property_value: IAO:0000601 "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/020-002"} +property_value: IAO:0000602 "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/021-002"} +property_value: IAO:0000602 "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/020-002"} +property_value: IAO:0000602 "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/019-002"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000140 +name: continuant fiat boundary +def: "b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/029-001"} +is_a: BFO:0000141 ! immaterial entity +property_value: BFO:0000179 "cf-boundary" xsd:string +property_value: BFO:0000180 "ContinuantFiatBoundary" xsd:string +property_value: editor_note "BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29" xsd:string +property_value: editor_note "BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions." xsd:string +property_value: editor_note "Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions." xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000008"} +property_value: IAO:0000601 "Every continuant fiat boundary is located at some spatial region at every time at which it exists" xsd:string +property_value: IAO:0000602 "(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/029-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000141 +name: immaterial entity +is_a: BFO:0000004 ! independent continuant +property_value: BFO:0000179 "immaterial" xsd:string +property_value: BFO:0000180 "ImmaterialEntity" xsd:string +property_value: editor_note "BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10" xsd:string +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000142 +name: one-dimensional continuant fiat boundary +is_a: BFO:0000140 ! continuant fiat boundary +disjoint_from: BFO:0000146 ! two-dimensional continuant fiat boundary +disjoint_from: BFO:0000147 ! zero-dimensional continuant fiat boundary +property_value: BFO:0000179 "1d-cf-boundary" xsd:string +property_value: BFO:0000180 "OneDimensionalContinuantFiatBoundary" xsd:string +property_value: IAO:0000112 "all geopolitical boundaries" xsd:string +property_value: IAO:0000112 "all lines of latitude and longitude" xsd:string +property_value: IAO:0000112 "The Equator" xsd:string +property_value: IAO:0000112 "the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin." xsd:string +property_value: IAO:0000112 "the median sulcus of your tongue" xsd:string +property_value: IAO:0000600 "a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/032-001"} +property_value: IAO:0000602 "(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/032-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000144 +name: process profile +def: "b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/093-002"} +is_a: BFO:0000015 ! process +disjoint_from: BFO:0000182 ! history +property_value: BFO:0000179 "process-profile" xsd:string +property_value: BFO:0000180 "ProcessProfile" xsd:string +property_value: IAO:0000112 "On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels" xsd:string +property_value: IAO:0000112 "One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance." xsd:string +property_value: IAO:0000112 "The simplest type of process profiles are what we shall call β€˜quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on." xsd:string +property_value: IAO:0000600 "b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/094-005"} +property_value: IAO:0000602 "(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/094-005"} +property_value: IAO:0000602 "(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/093-002"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000145 +name: relational quality +def: "b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/057-001"} +is_a: BFO:0000019 ! quality +property_value: BFO:0000179 "r-quality" xsd:string +property_value: BFO:0000180 "RelationalQuality" xsd:string +property_value: IAO:0000112 "a marriage bond, an instance of love, an obligation between one person and another." xsd:string +property_value: IAO:0000112 "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married." xsd:string +property_value: IAO:0000602 "(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/057-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000146 +name: two-dimensional continuant fiat boundary +is_a: BFO:0000140 ! continuant fiat boundary +property_value: BFO:0000179 "2d-cf-boundary" xsd:string +property_value: BFO:0000180 "TwoDimensionalContinuantFiatBoundary" xsd:string +property_value: IAO:0000600 "a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/033-001"} +property_value: IAO:0000602 "(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/033-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000147 +name: zero-dimensional continuant fiat boundary +is_a: BFO:0000140 ! continuant fiat boundary +property_value: BFO:0000179 "0d-cf-boundary" xsd:string +property_value: BFO:0000180 "ZeroDimensionalContinuantFiatBoundary" xsd:string +property_value: editor_note "zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona." xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000001", comment="requested by Melanie Courtot", http://www.w3.org/2000/01/rdf-schema#seeAlso="ZDRnpiIi:TUJ"} +property_value: IAO:0000112 "the geographic North Pole" xsd:string +property_value: IAO:0000112 "the point of origin of some spatial coordinate system." xsd:string +property_value: IAO:0000112 "the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet" xsd:string +property_value: IAO:0000600 "a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/031-001"} +property_value: IAO:0000602 "(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/031-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000148 +name: zero-dimensional temporal region +is_a: BFO:0000008 ! temporal region +property_value: BFO:0000179 "0d-t-region" xsd:string +property_value: BFO:0000180 "ZeroDimensionalTemporalRegion" xsd:string +property_value: IAO:0000112 "a temporal region that is occupied by a process boundary" xsd:string +property_value: IAO:0000112 "right now" xsd:string +property_value: IAO:0000112 "the moment at which a child is born" xsd:string +property_value: IAO:0000112 "the moment at which a finger is detached in an industrial accident" xsd:string +property_value: IAO:0000112 "the moment of death." xsd:string +property_value: IAO:0000118 "temporal instant." xsd:string +property_value: IAO:0000600 "A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/102-001"} +property_value: IAO:0000602 "(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001]" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/102-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: BFO:0000182 +name: history +is_a: BFO:0000015 ! process +property_value: BFO:0000179 "history" xsd:string +property_value: BFO:0000180 "History" xsd:string +property_value: IAO:0000600 "A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])" xsd:string {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/138-001"} +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Term] +id: CHEBI:100147 +name: nalidixic acid +namespace: chebi_ontology +alt_id: CHEBI:7456 +def: "A monocarboxylic acid comprising 1,8-naphthyridin-4-one substituted by carboxylic acid, ethyl and methyl groups at positions 3, 1, and 7, respectively. An orally administered antibacterial, it is used in the treatment of lower urinary-tract infections due to Gram-negative bacteria, including the majority of E. coli, Enterobacter, Klebsiella, and Proteus species." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,4-dihydro-1-ethyl-7-methyl-4-oxo-1,8-naphthyridine-3-carboxylic acid" RELATED [ChemIDplus] +synonym: "1-Aethyl-7-methyl-1,8-naphthyridin-4-on-3-karbonsaeure" RELATED [ChemIDplus] +synonym: "1-ethyl-1,4-dihydro-7-methyl-4-oxo-1,8-naphthyridine-3-carboxylic acid" RELATED [ChemIDplus] +synonym: "1-ethyl-7-methyl-1,4-dihydro-1,8-naphthyridin-4-one-3-carboxylic acid" RELATED [ChemIDplus] +synonym: "1-ethyl-7-methyl-4-oxo-1,4-dihydro-1,8-naphthyridine-3-carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "1-Ethyl-7-methyl-4-oxo-1,4-dihydro-[1,8]naphthyridine-3-carboxylic acid" RELATED [ChEMBL] +synonym: "232.085" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "232.23530" RELATED MASS [ChEBI] +synonym: "3-carboxy-1-ethyl-7-methyl-1,8-naphthyridin-4-one" RELATED [ChemIDplus] +synonym: "acide nalidixique" RELATED INN [ChemIDplus] +synonym: "acido nalidixico" RELATED INN [ChemIDplus] +synonym: "acidum nalidixicum" RELATED INN [ChemIDplus] +synonym: "C12H12N2O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CCn1cc(C(O)=O)c(=O)c2ccc(C)nc12" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C12H12N2O3/c1-3-14-6-9(12(16)17)10(15)8-5-4-7(2)13-11(8)14/h4-6H,3H2,1-2H3,(H,16,17)" RELATED InChI [ChEBI] +synonym: "MHWLWQUZZRMNGJ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "NALIDIXIC ACID" EXACT [ChEMBL] +synonym: "Nalidixic acid" EXACT [KEGG_COMPOUND] +synonym: "nalidixic acid" RELATED INN [ChemIDplus] +xref: CAS:389-08-2 "KEGG COMPOUND" +xref: colombos:NALIDIXIC_ACID +xref: Drug_Central:1875 "DrugCentral" +xref: DrugBank:DB00779 +xref: KEGG:C05079 +xref: KEGG:D00183 +xref: LINCS:LSM-5590 +xref: Patent:BE612258 +xref: Patent:US3590036 +xref: PDBeChem:NIX +xref: PMID:11321869 "Europe PMC" +xref: PMID:12002106 "Europe PMC" +xref: PMID:12399485 "Europe PMC" +xref: PMID:12702698 "Europe PMC" +xref: PMID:14107587 "Europe PMC" +xref: PMID:16107187 "Europe PMC" +xref: PMID:16423473 "Europe PMC" +xref: PMID:16667857 "Europe PMC" +xref: PMID:16803589 "Europe PMC" +xref: PMID:17132068 "Europe PMC" +xref: PMID:17631104 "Europe PMC" +xref: PMID:18788798 "Europe PMC" +xref: PMID:19071706 "Europe PMC" +xref: PMID:28166217 "Europe PMC" +xref: Reaxys:750515 "Reaxys" +xref: Wikipedia:Nalidixic_Acid +is_a: CHEBI:25384 ! monocarboxylic acid +is_a: CHEBI:73537 ! 1,8-naphthyridine derivative +is_a: CHEBI:86324 ! quinolone antibiotic +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: has_role CHEBI:59517 ! DNA synthesis inhibitor +relationship: is_conjugate_acid_of CHEBI:62070 ! nalidixic acid anion + +[Term] +id: CHEBI:100241 +name: ciprofloxacin +namespace: chebi_ontology +alt_id: CHEBI:102718 +alt_id: CHEBI:3717 +alt_id: CHEBI:41638 +def: "A quinolone that is quinolin-4(1H)-one bearing cyclopropyl, carboxylic acid, fluoro and piperazin-1-yl substituents at positions 1, 3, 6 and 7, respectively." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-cyclopropyl-6-fluoro-1,4-dihydro-4-oxo-7-(1-piperazinyl)-3-quinolinecarboxylic acid" RELATED [ChemIDplus] +synonym: "1-cyclopropyl-6-fluoro-4-oxo-7-(piperazin-1-yl)-1,4-dihydroquinoline-3-carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "1-cyclopropyl-6-fluoro-4-oxo-7-(piperazin-1-yl)-1,4-dihydroquinoline-3-carboxylic acid" RELATED [ChEMBL] +synonym: "1-Cyclopropyl-6-fluoro-4-oxo-7-piperazin-1-yl-1,4-dihydro-quinoline-3-carboxylic acid" RELATED [ChEMBL] +synonym: "1-CYCLOPROPYL-6-FLUORO-4-OXO-7-PIPERAZIN-1-YL-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC ACID" RELATED [PDBeChem] +synonym: "1-cyclopropyl-6-fluoro-4-oxo-7-piperazin-1-ylquinoline-3-carboxylic acid" RELATED [ChEMBL] +synonym: "1-Cyclopropyl-6-fluoro-7-(4-methyl-piperazin-1-yl)-4-oxo-1,4-dihydro-quinoline-3-carboxylic acid" RELATED [ChEMBL] +synonym: "1-cyclopropyl-6-fluoro-7-hexahydro-1-pyrazinyl-4-oxo-1,4-dihydro-3-quinolinecarboxylic acid" RELATED [ChEMBL] +synonym: "331.133" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "331.34150" RELATED MASS [ChEBI] +synonym: "C17H18FN3O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Ciprofloxacin" EXACT [KEGG_COMPOUND] +synonym: "ciprofloxacin" EXACT [ChEMBL] +synonym: "ciprofloxacin" RELATED INN [ChemIDplus] +synonym: "ciprofloxacine" RELATED INN [ChemIDplus] +synonym: "ciprofloxacino" RELATED INN [ChemIDplus] +synonym: "ciprofloxacinum" RELATED INN [ChemIDplus] +synonym: "InChI=1S/C17H18FN3O3/c18-13-7-11-14(8-15(13)20-5-3-19-4-6-20)21(10-1-2-10)9-12(16(11)22)17(23)24/h7-10,19H,1-6H2,(H,23,24)" RELATED InChI [ChEBI] +synonym: "MYSWGUAQZAJSOK-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "OC(=O)c1cn(C2CC2)c2cc(N3CCNCC3)c(F)cc2c1=O" RELATED SMILES [ChEBI] +xref: Beilstein:3568352 "Beilstein" +xref: CAS:85721-33-1 "KEGG COMPOUND" +xref: colombos:CIPROFLOXACIN +xref: Drug_Central:659 "DrugCentral" +xref: DrugBank:DB00537 +xref: HMDB:HMDB14677 +xref: KEGG:C05349 +xref: KEGG:D00186 +xref: LINCS:LSM-5226 +xref: Patent:DE3142854 +xref: Patent:US4670444 +xref: PDBeChem:CPF +xref: PMID:10397494 "ChEMBL" +xref: PMID:10737746 "ChEMBL" +xref: Reaxys:3568352 "Reaxys" +xref: Wikipedia:Ciprofloxacin +is_a: CHEBI:23765 ! quinolone +is_a: CHEBI:26512 ! quinolinemonocarboxylic acid +is_a: CHEBI:36709 ! aminoquinoline +is_a: CHEBI:46848 ! N-arylpiperazine +is_a: CHEBI:86324 ! quinolone antibiotic +is_a: CHEBI:87211 ! fluoroquinolone antibiotic +relationship: has_role CHEBI:35703 ! xenobiotic +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: has_role CHEBI:50750 ! EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor +relationship: has_role CHEBI:53559 ! topoisomerase IV inhibitor +relationship: has_role CHEBI:59517 ! DNA synthesis inhibitor +relationship: has_role CHEBI:78298 ! environmental contaminant + +[Term] +id: CHEBI:100246 +name: norfloxacin +namespace: chebi_ontology +alt_id: CHEBI:7629 +def: "A quinolinemonocarboxylic acid with broad-spectrum antibacterial activity against most gram-negative and gram-positive bacteria. Norfloxacin is bactericidal and its mode of action depends on blocking of bacterial DNA replication by binding itself to an enzyme called DNA gyrase." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,4-Dihydro-1-ethyl-6-fluoro-4-oxo-7-(1-piperazinyl)-3-quinolinecarboxylic acid" RELATED [ChemIDplus] +synonym: "1-Ethyl-6-fluor-1,4-dihydro-4-oxo-7-(1-piperazinyl)-3-chinolincarbonsaeure" RELATED [ChemIDplus] +synonym: "1-Ethyl-6-fluoro-1,4-dihydro-4-oxo-7-(1-piperazinyl)-3-quinolinecarboxylic acid" RELATED [ChemIDplus] +synonym: "1-ethyl-6-fluoro-4-oxo-7-(piperazin-1-yl)-1,4-dihydroquinoline-3-carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "319.133" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "319.33080" RELATED MASS [ChEBI] +synonym: "C16H18FN3O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CCn1cc(C(O)=O)c(=O)c2cc(F)c(cc12)N1CCNCC1" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C16H18FN3O3/c1-2-19-9-11(16(22)23)15(21)10-7-12(17)14(8-13(10)19)20-5-3-18-4-6-20/h7-9,18H,2-6H2,1H3,(H,22,23)" RELATED InChI [ChEBI] +synonym: "NFLX" RELATED [KEGG_DRUG] +synonym: "norfloxacin" RELATED INN [KEGG_DRUG] +synonym: "norfloxacine" RELATED INN [ChemIDplus] +synonym: "norfloxacino" RELATED INN [ChemIDplus] +synonym: "norfloxacinum" RELATED INN [ChemIDplus] +synonym: "OGJPXUAPXNRGGI-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:567897 "Beilstein" +xref: CAS:70458-96-7 "KEGG COMPOUND" +xref: colombos:NORFLOXACIN +xref: Drug_Central:1967 "DrugCentral" +xref: DrugBank:DB01059 +xref: Gmelin:1576626 "Gmelin" +xref: HMDB:HMDB15192 +xref: KEGG:C06687 +xref: KEGG:D00210 +xref: LINCS:LSM-5286 +xref: Patent:BE863429 +xref: Patent:DE2840910 +xref: Patent:US4146719 +xref: Patent:US4292317 +xref: PMID:3317294 "Europe PMC" +xref: PMID:3908074 "Europe PMC" +xref: PMID:6211142 "Europe PMC" +xref: PMID:6224685 "Europe PMC" +xref: PMID:6234465 "Europe PMC" +xref: PMID:6454381 "Europe PMC" +xref: PMID:6461606 "Europe PMC" +xref: Reaxys:567897 "Reaxys" +xref: Wikipedia:Norfloxacin +is_a: CHEBI:23765 ! quinolone +is_a: CHEBI:26512 ! quinolinemonocarboxylic acid +is_a: CHEBI:46848 ! N-arylpiperazine +is_a: CHEBI:86324 ! quinolone antibiotic +is_a: CHEBI:87211 ! fluoroquinolone antibiotic +relationship: has_role CHEBI:35703 ! xenobiotic +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: has_role CHEBI:59517 ! DNA synthesis inhibitor +relationship: has_role CHEBI:78298 ! environmental contaminant + +[Term] +id: CHEBI:102484 +name: sulfisoxazole +namespace: chebi_ontology +alt_id: CHEBI:9343 +def: "A sulfonamide antibacterial with an oxazole substituent. It has antibiotic activity against a wide range of gram-negative and gram-positive organisms." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "267.068" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "267.30400" RELATED MASS [ChEBI] +synonym: "3,4-Dimethyl-5-sulfanilamidoisoxazole" RELATED [ChemIDplus] +synonym: "3,4-Dimethyl-5-sulfonamidoisoxazole" RELATED [ChemIDplus] +synonym: "3,4-Dimethyl-5-sulphanilamidoisoxazole" RELATED [ChemIDplus] +synonym: "3,4-Dimethyl-5-sulphonamidoisoxazole" RELATED [ChemIDplus] +synonym: "3,4-Dimethylisoxazole-5-sulfanilamide" RELATED [ChemIDplus] +synonym: "3,4-Dimethylisoxazole-5-sulphanilamide" RELATED [ChemIDplus] +synonym: "4-Amino-N-(3,4-dimethyl-5-isoxazolyl)benzenesulfonamide" RELATED [NIST_Chemistry_WebBook] +synonym: "4-Amino-N-(3,4-dimethyl-5-isoxazolyl)benzenesulphonamide" RELATED [ChemIDplus] +synonym: "4-amino-N-(3,4-dimethylisoxazol-5-yl)benzenesulfonamide" EXACT IUPAC_NAME [IUPAC] +synonym: "5-(4-Aminophenylsulfonamido)-3,4-dimethylisoxazole" RELATED [ChemIDplus] +synonym: "5-(p-Aminobenzenesulfonamido)-3,4-dimethylisoxazole" RELATED [ChemIDplus] +synonym: "5-(p-Aminobenzenesulphonamido)-3,4-dimethylisoxazole" RELATED [ChemIDplus] +synonym: "5-Sulfanilamido-3,4-dimethylisoxazole" RELATED [ChemIDplus] +synonym: "5-Sulphanilamido-3,4-dimethyl-isoxazole" RELATED [ChemIDplus] +synonym: "C11H13N3O3S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cc1noc(NS(=O)(=O)c2ccc(N)cc2)c1C" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C11H13N3O3S/c1-7-8(2)13-17-11(7)14-18(15,16)10-5-3-9(12)4-6-10/h3-6,14H,12H2,1-2H3" RELATED InChI [ChEBI] +synonym: "N'-(3,4)Dimethylisoxazol-5-yl-sulphanilamide" RELATED [ChemIDplus] +synonym: "N(1)-(3,4-dimethyl-5-isoxazolyl)sulfanilamide" RELATED [ChemIDplus] +synonym: "N(1)-(3,4-dimethyl-5-isoxazolyl)sulphanilamide" RELATED [ChemIDplus] +synonym: "NHUHCSRWZMLRLA-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Sulfadimethylisoxazole" RELATED [DrugBank] +synonym: "Sulfafurazol" RELATED [DrugBank] +synonym: "sulfafurazole" RELATED INN [KEGG_DRUG] +synonym: "sulfafurazolum" RELATED INN [ChemIDplus] +synonym: "Sulfaisoxazole" RELATED [DrugBank] +synonym: "Sulfasoxazole" RELATED [DrugBank] +synonym: "Sulfisonazole" RELATED [DrugBank] +synonym: "Sulfisoxasole" RELATED [DrugBank] +synonym: "Sulfisoxazol" RELATED [DrugBank] +synonym: "Sulfofurazole" RELATED [DrugBank] +synonym: "Sulphadimethylisoxazole" RELATED [NIST_Chemistry_WebBook] +synonym: "Sulphafurazol" RELATED [DrugBank] +synonym: "Sulphafurazole" RELATED [DrugBank] +synonym: "Sulphaisoxazole" RELATED [DrugBank] +synonym: "Sulphisoxazol" RELATED [DrugBank] +synonym: "Sulphofurazole" RELATED [DrugBank] +xref: Beilstein:263871 "Beilstein" +xref: CAS:127-69-5 "ChemIDplus" +xref: colombos:SULFISOXAZOLE +xref: colombos:SULFISOXAZOLE\:+UNKNOWN +xref: Drug_Central:2529 "DrugCentral" +xref: DrugBank:DB00263 +xref: Gmelin:864477 "Gmelin" +xref: KEGG:C07318 +xref: KEGG:D00450 +xref: LINCS:LSM-3120 +xref: Patent:US2430094 +xref: PMID:1861917 "Europe PMC" +xref: PMID:4960234 "Europe PMC" +xref: PMID:7356572 "Europe PMC" +xref: Wikipedia:Sulfisoxazole +is_a: CHEBI:55373 ! isoxazoles +is_a: CHEBI:87228 ! sulfonamide antibiotic +relationship: has_functional_parent CHEBI:45373 ! sulfanilamide +relationship: has_role CHEBI:36047 ! antibacterial drug + +[Term] +id: CHEBI:10545 +name: electron +namespace: chebi_ontology +def: "Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "0.000548579903" RELATED MASS [ChEBI] +synonym: "[*-]" RELATED SMILES [ChEBI] +synonym: "beta" RELATED [IUPAC] +synonym: "beta(-)" RELATED [ChEBI] +synonym: "beta-particle" RELATED [IUPAC] +synonym: "e" RELATED [IUPAC] +synonym: "e(-)" RELATED [UniProt] +synonym: "e-" RELATED [KEGG_COMPOUND] +synonym: "electron" EXACT [KEGG_COMPOUND] +synonym: "electron" EXACT IUPAC_NAME [IUPAC] +synonym: "electron" EXACT [ChEBI] +synonym: "negatron" RELATED [IUPAC] +xref: KEGG:C05359 +xref: PMID:21614077 "Europe PMC" +is_a: CHEBI:36338 ! lepton + +[Term] +id: CHEBI:10642 +name: scyllo-inositol +namespace: chebi_ontology +alt_id: CHEBI:26614 +subset: 3_STAR +synonym: "(1r,2r,3r,4r,5r,6r)-cyclohexane-1,2,3,4,5,6-hexol" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,3,5/2,4,6-cyclohexanehexol" RELATED [IUPAC] +synonym: "180.063" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "180.15588" RELATED MASS [ChEBI] +synonym: "C6H12O6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CDAISMWEOUEBRE-CDRYSYESSA-N" RELATED InChIKey [ChEBI] +synonym: "Cocositol" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/C6H12O6/c7-1-2(8)4(10)6(12)5(11)3(1)9/h1-12H/t1-,2-,3+,4+,5-,6-" RELATED InChI [ChEBI] +synonym: "O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "Quercinitol" RELATED [ChemIDplus] +synonym: "Scyllitol" RELATED [ChemIDplus] +synonym: "scyllo-Inositol" EXACT [KEGG_COMPOUND] +synonym: "scyllo-inositol" EXACT IUPAC_NAME [IUPAC] +synonym: "scyllo-inositol" EXACT [UniProt] +xref: Beilstein:2206312 "Beilstein" +xref: CAS:488-59-5 "KEGG COMPOUND" +xref: Gmelin:561300 "Gmelin" +xref: KEGG:C06153 +xref: PMID:24352657 "Europe PMC" +xref: Reaxys:2206312 "Reaxys" +is_a: CHEBI:24848 ! inositol +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:113455 +name: sodium benzoate +namespace: chebi_ontology +def: "An organic sodium salt resulting from the replacement of the proton from the carboxy group of benzoic acid by a sodium ion." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "144.019" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "144.103" RELATED MASS [ChEBI] +synonym: "Benzoic acid, sodium salt" RELATED [ChemIDplus] +synonym: "C(C=1C=CC=CC1)([O-])=O.[Na+]" RELATED SMILES [ChEBI] +synonym: "C7H5NaO2" RELATED FORMULA [ChEBI] +synonym: "E211" RELATED [ChEBI] +synonym: "InChI=1S/C7H6O2.Na/c8-7(9)6-4-2-1-3-5-6;/h1-5H,(H,8,9);/q;+1/p-1" RELATED InChI [ChEBI] +synonym: "Sodium benzoate" RELATED BRAND_NAME [KEGG_DRUG] +synonym: "sodium benzoate" EXACT IUPAC_NAME [IUPAC] +synonym: "WXMKPNITSTVMEF-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: CAS:532-32-1 "ChemIDplus" +xref: colombos:SODIUM_BENZOATE +xref: colombos:SODIUMBENZOATE +xref: KEGG:D02277 +xref: PMID:25377186 "Europe PMC" +xref: PMID:25582668 "Europe PMC" +xref: PMID:26585641 "Europe PMC" +xref: PMID:26706697 "Europe PMC" +xref: PMID:26749113 "Europe PMC" +xref: PMID:26870932 "Europe PMC" +xref: PMID:26875563 "Europe PMC" +xref: PMID:26907495 "Europe PMC" +xref: PMID:26951541 "Europe PMC" +xref: PMID:26989415 "Europe PMC" +xref: PMID:27000017 "Europe PMC" +xref: Reaxys:1100243 "Reaxys" +xref: Wikipedia:Sodium_benzoate +is_a: CHEBI:38700 ! organic sodium salt +relationship: has_part CHEBI:16150 ! benzoate +relationship: has_role CHEBI:64996 ! EC 1.13.11.33 (arachidonate 15-lipoxygenase) inhibitor +relationship: has_role CHEBI:65001 ! EC 3.1.1.3 (triacylglycerol lipase) inhibitor +relationship: has_role CHEBI:65256 ! antimicrobial food preservative +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76967 ! human xenobiotic metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: has_role CHEBI:88188 ! drug allergen + +[Term] +id: CHEBI:11955 +name: 4-amino-3-hydroxybutanoate +namespace: chebi_ontology +def: "The conjugate base of gamma-amino-beta-hydroxybutyric acid arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "118.050" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "118.11126" RELATED MASS [ChEBI] +synonym: "4-Amino-3-hydroxybutanoate" EXACT [KEGG_COMPOUND] +synonym: "C4H8NO3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H9NO3/c5-2-3(6)1-4(7)8/h3,6H,1-2,5H2,(H,7,8)/p-1" RELATED InChI [ChEBI] +synonym: "NCC(O)CC([O-])=O" RELATED SMILES [ChEBI] +synonym: "YQGDEPYYFWUPGO-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: CAS:352-21-6 "KEGG COMPOUND" +xref: KEGG:C03678 "ChEBI" +is_a: CHEBI:36059 ! hydroxy monocarboxylic acid anion +is_a: CHEBI:71666 ! gamma-amino acid anion +relationship: has_functional_parent CHEBI:17968 ! butyrate +relationship: is_conjugate_base_of CHEBI:16080 ! gamma-amino-beta-hydroxybutyric acid +relationship: is_conjugate_base_of CHEBI:57630 ! gamma-amino-beta-hydroxybutyric acid zwitterion + +[Term] +id: CHEBI:12936 +name: D-galactose +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "180.15588" RELATED MASS [ChEBI] +synonym: "C6H12O6" RELATED FORMULA [ChEBI] +synonym: "D-Gal" RELATED [JCBN] +synonym: "D-galacto-hexose" EXACT IUPAC_NAME [IUPAC] +synonym: "D-galactose" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:17608 ! D-aldohexose +is_a: CHEBI:28260 ! galactose +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:131367 +name: 3-hydroxy-3-butenoic acid +namespace: chebi_ontology +def: "A 3-hydroxymonocarboxylic acid that is the 3-hydroxy derivative of 3-butenoic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "102.032" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "102.089" RELATED MASS [ChEBI] +synonym: "3-hydroxybut-3-enoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "C4H6O3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H6O3/c1-3(5)2-4(6)7/h5H,1-2H2,(H,6,7)" RELATED InChI [ChEBI] +synonym: "OC(CC(O)=O)=C" RELATED SMILES [ChEBI] +synonym: "YMXHTKKMLXGXDC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Chemspider:8637633 +is_a: CHEBI:1549 ! 3-hydroxymonocarboxylic acid +is_a: CHEBI:33823 ! enol +relationship: is_tautomer_of CHEBI:15344 ! acetoacetic acid + +[Term] +id: CHEBI:131401 +name: hexopyranosyl hexopyranoside +namespace: chebi_ontology +def: "A disaccharide formed by a (1<->1)-glycosidic bond between two hexopyranose units." [] +subset: 3_STAR +synonym: "hexopyranosyl hexopyranoside" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:24407 ! glycosyl glycoside + +[Term] +id: CHEBI:131604 +name: Mycoplasma genitalium metabolite +namespace: chebi_ontology +def: "Any bacterial metabolite produced during a metabolic reaction in Mycoplasma genitalium." [] +subset: 3_STAR +synonym: "Mycoplasma genitalium metabolites" RELATED [ChEBI] +is_a: CHEBI:76969 ! bacterial metabolite + +[Term] +id: CHEBI:131620 +name: C24-steroid +namespace: chebi_ontology +def: "A steroid compound with a structure based on a 24-carbon (cholane) skeleton." [] +subset: 3_STAR +synonym: "C24-steroids" RELATED [ChEBI] +is_a: CHEBI:131657 ! cholane derivative + +[Term] +id: CHEBI:131657 +name: cholane derivative +namespace: chebi_ontology +def: "Any steroid (or derivative) based on a cholane skeleton." [] +subset: 3_STAR +synonym: "cholane derivatives" RELATED [ChEBI] +is_a: CHEBI:35341 ! steroid +relationship: has_parent_hydride CHEBI:35519 ! cholane + +[Term] +id: CHEBI:131878 +name: cholanic acid anion +namespace: chebi_ontology +def: "Any steroid acid anion based on a cholanic acid skeleton." [] +subset: 3_STAR +synonym: "cholanic acid anions" RELATED [ChEBI] +synonym: "cholanoic acid anions" RELATED [ChEBI] +is_a: CHEBI:36235 ! bile acid anion + +[Term] +id: CHEBI:131879 +name: cholanic acid conjugate anion +namespace: chebi_ontology +def: "An organic anion obtained by deprotonation of any cholanic acid conjugate." [] +subset: 3_STAR +synonym: "cholanic acid conjugate anions" RELATED [SUBMITTER] +synonym: "cholanoic acid conjugate anion" RELATED [SUBMITTER] +synonym: "cholanoic acid conjugate anions" RELATED [ChEBI] +is_a: CHEBI:25696 ! organic anion + +[Term] +id: CHEBI:131927 +name: dicarboxylic acids and O-substituted derivatives +namespace: chebi_ontology +def: "A class of carbonyl compound encompassing dicarboxylic acids and any derivatives obtained by substitution of either one or both of the carboxy hydrogens." [] +subset: 3_STAR +synonym: "dicarboxylic acids and derivatives" RELATED [ChEBI] +is_a: CHEBI:36586 ! carbonyl compound + +[Term] +id: CHEBI:132130 +name: hydroxyquinone +namespace: chebi_ontology +def: "Any quinone in which one or more of the carbons making up the quinone moiety is substituted by a hydroxy group." [] +subset: 3_STAR +synonym: "hydroxyquinones" RELATED [ChEBI] +is_a: CHEBI:33822 ! organic hydroxy compound +is_a: CHEBI:36141 ! quinone + +[Term] +id: CHEBI:132142 +name: 1,4-naphthoquinones +namespace: chebi_ontology +def: "A naphthoquinone in which the oxo groups of the quinone moiety are at positions 1 and 4 of the parent naphthalene ring." [] +subset: 3_STAR +is_a: CHEBI:25481 ! naphthoquinone +is_a: CHEBI:25830 ! p-quinones + +[Term] +id: CHEBI:132155 +name: hydroxynaphthoquinone +namespace: chebi_ontology +def: "Any naphthoquinone in which the naphthaoquinone moiety is substituted by at least one hydroxy group." [] +subset: 3_STAR +synonym: "hydroxynaphthoquinones" RELATED [ChEBI] +xref: Wikipedia:Hydroxynaphthoquinone +is_a: CHEBI:132130 ! hydroxyquinone +is_a: CHEBI:25481 ! naphthoquinone + +[Term] +id: CHEBI:132157 +name: hydroxy-1,4-naphthoquinone +namespace: chebi_ontology +def: "Any member of the class of 1,4-naphthoquinones in which the naphthoquinone moiety is substituted by at least one hydroxy group." [] +subset: 3_STAR +synonym: "hydroxy-1,4-naphthoquinones" RELATED [ChEBI] +is_a: CHEBI:132142 ! 1,4-naphthoquinones +is_a: CHEBI:132155 ! hydroxynaphthoquinone + +[Term] +id: CHEBI:132362 +name: citrate(4-) +namespace: chebi_ontology +def: "A citrate anion obtained by deprotonation of the three carboxy groups as well as the hydroxy group of citric acid." [] +subset: 3_STAR +synonym: "-4" RELATED CHARGE [ChEBI] +synonym: "187.996" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "188.092" RELATED MASS [ChEBI] +synonym: "2-oxido-1,2,3-propanetricarboxylate" RELATED [ChEBI] +synonym: "2-oxidopropane-1,2,3-tricarboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "C(=O)([O-])C(CC(=O)[O-])(CC(=O)[O-])[O-]" RELATED SMILES [ChEBI] +synonym: "C6H4O7" RELATED FORMULA [ChEBI] +synonym: "citric acid tetraanion" RELATED [ChEBI] +synonym: "InChI=1S/C6H7O7/c7-3(8)1-6(13,5(11)12)2-4(9)10/h1-2H2,(H,7,8)(H,9,10)(H,11,12)/q-1/p-3" RELATED InChI [ChEBI] +synonym: "KSXLKRAZYZIYCZ-UHFFFAOYSA-K" RELATED InChIKey [ChEBI] +xref: Chemspider:34552020 +is_a: CHEBI:133748 ! citrate anion +relationship: is_conjugate_base_of CHEBI:16947 ! citrate(3-) + +[Term] +id: CHEBI:13248 +name: anilide +namespace: chebi_ontology +def: "Any aromatic amide obtained by acylation of aniline." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "120.045" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "120.12860" RELATED MASS [ChEBI] +synonym: "[*]C(=O)Nc1ccccc1" RELATED SMILES [ChEBI] +synonym: "an anilide" RELATED [UniProt] +synonym: "C7H6NOR" RELATED FORMULA [ChEBI] +synonym: "N-phenyl amide" RELATED [ChEBI] +synonym: "N-phenyl amides" RELATED [ChEBI] +xref: KEGG:C01402 +xref: PMID:23535982 "Europe PMC" +xref: PMID:23968552 "Europe PMC" +xref: PMID:24273122 "Europe PMC" +xref: PMID:6205897 "Europe PMC" +is_a: CHEBI:22712 ! benzenes +is_a: CHEBI:62733 ! aromatic amide +relationship: has_functional_parent CHEBI:17296 ! aniline + +[Term] +id: CHEBI:132717 +name: bleaching agent +namespace: chebi_ontology +def: "A reagent that lightens or whitens a substrate through chemical reaction. Bleaching reactions usually involve oxidative or reductive processes that degrade colour systems. Bleaching can occur by destroying one or more of the double bonds in the conjugated chain, by cleaving the conjugated chain, or by oxidation of one of the other moieties in the conjugated chain. Their reactivity results in many bleaches having strong bactericidal, disinfecting, and sterilising properties." [] +subset: 3_STAR +xref: Wikipedia:Bleach +is_a: CHEBI:33893 ! reagent + +[Term] +id: CHEBI:132943 +name: aspartate +namespace: chebi_ontology +subset: 1_STAR +synonym: "aspartate anion" RELATED [ChEBI] +synonym: "aspartic acid anion" RELATED [ChEBI] +is_a: CHEBI:33558 ! alpha-amino-acid anion +is_a: CHEBI:35693 ! dicarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:22660 ! aspartic acid +relationship: MCO:0000858 MCO:0000865 ! sucrose 15% nitrogen source + +[Term] +id: CHEBI:132950 +name: tartrate +namespace: chebi_ontology +alt_id: CHEBI:35396 +def: "A dicarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of any tartaric acid." [] +subset: 3_STAR +synonym: "tartaric acid anion" RELATED [ChEBI] +synonym: "tartaric acid anions" RELATED [ChEBI] +synonym: "tartrate" EXACT [ChEBI] +synonym: "tartrate anion" RELATED [ChEBI] +synonym: "tartrate anions" RELATED [ChEBI] +synonym: "tartrates" RELATED [ChEBI] +is_a: CHEBI:33798 ! tetraric acid anion + +[Term] +id: CHEBI:132951 +name: maleate +namespace: chebi_ontology +def: "A dicarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of maleic acid." [] +subset: 3_STAR +synonym: "maleate anion" RELATED [ChEBI] +synonym: "maleate anions" RELATED [ChEBI] +synonym: "maleates" RELATED [ChEBI] +synonym: "maleic acid anion" RELATED [ChEBI] +synonym: "maleic acid anions" RELATED [ChEBI] +is_a: CHEBI:35693 ! dicarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:18300 ! maleic acid + +[Term] +id: CHEBI:133292 +name: 3-oxo fatty acid anion +namespace: chebi_ontology +def: "An oxo fatty acid anion obtained by deprotonation of the carboxy group of any 3-oxo fatty acid." [] +subset: 3_STAR +synonym: "*C(CC(=O)[O-])=O" RELATED SMILES [ChEBI] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "3-keto fatty acid anion" RELATED [SUBMITTER] +synonym: "3-keto fatty acid anions" RELATED [ChEBI] +synonym: "86.000" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "86.046" RELATED MASS [ChEBI] +synonym: "a 3-oxo fatty acid" RELATED [UniProt] +synonym: "C3H2O3R" RELATED FORMULA [ChEBI] +is_a: CHEBI:35973 ! 3-oxo monocarboxylic acid anion +is_a: CHEBI:59836 ! oxo fatty acid anion +relationship: is_conjugate_base_of CHEBI:134416 ! 3-oxo fatty acid + +[Term] +id: CHEBI:133331 +name: metal oxide +namespace: chebi_ontology +def: "An inorganic oxide that is an oxide of any metal." [] +subset: 3_STAR +synonym: "metal oxides" RELATED [ChEBI] +is_a: CHEBI:24836 ! inorganic oxide + +[Term] +id: CHEBI:133341 +name: choline chloride +namespace: chebi_ontology +def: "A quaternary ammonium salt with choline cation and chloride anion." [] +subset: 3_STAR +synonym: "(2-Hydroxyethyl)trimethylammonium chloride" RELATED [ChemIDplus] +synonym: "(beta-Hydroxyethyl)trimethylammonium chloride" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "139.076" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "139.624" RELATED MASS [ChEBI] +synonym: "2-Hydroxy-N,N,N,-trimethylethanaminium chloride" RELATED [ChemIDplus] +synonym: "2-hydroxy-N,N,N-trimethylethanaminium chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "[Cl-].[N+](CCO)(C)(C)C" RELATED SMILES [ChEBI] +synonym: "Bilineurin chloride" RELATED [ChemIDplus] +synonym: "Biocolina" RELATED [ChemIDplus] +synonym: "Biocoline" RELATED [ChemIDplus] +synonym: "C5H14ClNO" RELATED FORMULA [ChEBI] +synonym: "Chloride de choline" RELATED [ChemIDplus] +synonym: "Chlorure de choline" RELATED INN [ChemIDplus] +synonym: "Choline chlorhydrate" RELATED [ChemIDplus] +synonym: "choline chloride" RELATED INN [ChEBI] +synonym: "Choline hydrochloride" RELATED [ChemIDplus] +synonym: "Cholini chloridum" RELATED INN [ChemIDplus] +synonym: "Cholinium chloride" RELATED [ChemIDplus] +synonym: "Cloruro de colina" RELATED INN [ChemIDplus] +synonym: "Hepacholine" RELATED [ChemIDplus] +synonym: "InChI=1S/C5H14NO.ClH/c1-6(2,3)4-5-7;/h7H,4-5H2,1-3H3;1H/q+1;/p-1" RELATED InChI [ChEBI] +synonym: "Lipotril" RELATED [ChemIDplus] +synonym: "Luridin chloride" RELATED [ChemIDplus] +synonym: "Paresan" RELATED [ChemIDplus] +synonym: "SGMZJAMFUVOLNK-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "Trimethyl(2-hydroxyethyl)ammonium chloride" RELATED [ChemIDplus] +xref: Beilstein:3563126 "Beilstein" +xref: CAS:67-48-1 "NIST Chemistry WebBook" +xref: PMID:12962717 "Europe PMC" +xref: PMID:17596274 "Europe PMC" +xref: PMID:20396712 "Europe PMC" +xref: PMID:24905385 "Europe PMC" +xref: PMID:25037344 "Europe PMC" +xref: PMID:6196640 "Europe PMC" +xref: PMID:8047569 "Europe PMC" +xref: Reaxys:3563126 "Reaxys" +xref: Wikipedia:Choline_chloride +is_a: CHEBI:23114 ! chloride salt +is_a: CHEBI:35273 ! quaternary ammonium salt +relationship: has_part CHEBI:15354 ! choline +relationship: has_role CHEBI:82655 ! animal growth promotant + +[Term] +id: CHEBI:133673 +name: glyphosate(1-) +namespace: chebi_ontology +def: "An organophosphate oxoanion obtained by the deprotonation of the carboxy and one of the phosphate OH groups as well as protonation of the amino group of glyphosate. It is the major microspecies at pH 7.3 (according to Marvin v 6.2.0.)." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "168.006" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "168.065" RELATED MASS [ChEBI] +synonym: "C3H7NO5P" RELATED FORMULA [ChEBI] +synonym: "glyphosate" RELATED [UniProt] +synonym: "InChI=1S/C3H8NO5P/c5-3(6)1-4-2-10(7,8)9/h4H,1-2H2,(H,5,6)(H2,7,8,9)/p-1" RELATED InChI [ChEBI] +synonym: "O=C([O-])C[NH2+]CP(=O)(O)[O-]" RELATED SMILES [ChEBI] +synonym: "XDDAORKBJWWYJS-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_acid_of CHEBI:67052 ! glyphosate(2-) +relationship: is_conjugate_base_of CHEBI:27744 ! glyphosate + +[Term] +id: CHEBI:133748 +name: citrate anion +namespace: chebi_ontology +def: "A tricarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of citric acid." [] +subset: 3_STAR +synonym: "citrate" RELATED [ChEBI] +synonym: "citrate anions" RELATED [ChEBI] +is_a: CHEBI:35753 ! tricarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:30769 ! citric acid + +[Term] +id: CHEBI:133773 +name: pimelate +namespace: chebi_ontology +def: "A tricarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of pimelic acid." [] +subset: 3_STAR +synonym: "heptanedioic acid anion" RELATED [ChEBI] +synonym: "heptanedioic acid anions" RELATED [ChEBI] +synonym: "pimelates" RELATED [ChEBI] +synonym: "pimelic acid anion" RELATED [ChEBI] +synonym: "pimelic acid anions" RELATED [ChEBI] +is_a: CHEBI:35693 ! dicarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:30531 ! pimelic acid + +[Term] +id: CHEBI:134084 +name: EC 1.15.1.1 (superoxide dismutase) inhibitor +namespace: chebi_ontology +subset: 1_STAR +synonym: "copper-zinc superoxide dismutase inhibitor" RELATED [ChEBI] +synonym: "copper-zinc superoxide dismutase inhibitors" RELATED [ChEBI] +synonym: "Cu,Zn-SOD inhibitor" RELATED [ChEBI] +synonym: "Cu,Zn-SOD inhibitors" RELATED [ChEBI] +synonym: "Cu-Zn superoxide dismutase inhibitor" RELATED [ChEBI] +synonym: "Cu-Zn superoxide dismutase inhibitors" RELATED [ChEBI] +synonym: "cuprein inhibitor" RELATED [ChEBI] +synonym: "cuprein inhibitors" RELATED [ChEBI] +synonym: "cytocuprein inhibitor" RELATED [ChEBI] +synonym: "cytocuprein inhibitors" RELATED [ChEBI] +synonym: "EC 1.15.1.1 (superoxide dismutase) inhibitors" RELATED [ChEBI] +synonym: "EC 1.15.1.1 inhibitor" RELATED [ChEBI] +synonym: "EC 1.15.1.1 inhibitors" RELATED [ChEBI] +synonym: "erythrocuprein inhibitor" RELATED [ChEBI] +synonym: "erythrocuprein inhibitors" RELATED [ChEBI] +synonym: "Fe-SOD inhibitor" RELATED [ChEBI] +synonym: "Fe-SOD inhibitors" RELATED [ChEBI] +synonym: "ferrisuperoxide dismutase inhibitor" RELATED [ChEBI] +synonym: "ferrisuperoxide dismutase inhibitors" RELATED [ChEBI] +synonym: "hemocuprein inhibitor" RELATED [ChEBI] +synonym: "hemocuprein inhibitors" RELATED [ChEBI] +synonym: "hepatocuprein inhibitor" RELATED [ChEBI] +synonym: "hepatocuprein inhibitors" RELATED [ChEBI] +synonym: "Mn-SOD inhibitor" RELATED [ChEBI] +synonym: "Mn-SOD inhibitors" RELATED [ChEBI] +synonym: "SOD inhibitor" RELATED [ChEBI] +synonym: "SOD inhibitors" RELATED [ChEBI] +synonym: "SOD-1 inhibitor" RELATED [ChEBI] +synonym: "SOD-1 inhibitors" RELATED [ChEBI] +synonym: "SOD-2 inhibitor" RELATED [ChEBI] +synonym: "SOD-2 inhibitors" RELATED [ChEBI] +synonym: "SOD-3 inhibitor" RELATED [ChEBI] +synonym: "SOD-3 inhibitors" RELATED [ChEBI] +synonym: "SOD-4 inhibitor" RELATED [ChEBI] +synonym: "SOD-4 inhibitors" RELATED [ChEBI] +synonym: "SODF inhibitor" RELATED [ChEBI] +synonym: "SODF inhibitors" RELATED [ChEBI] +synonym: "SODS inhibitor" RELATED [ChEBI] +synonym: "SODS inhibitors" RELATED [ChEBI] +synonym: "superoxidase dismutase inhibitor" RELATED [ChEBI] +synonym: "superoxidase dismutase inhibitors" RELATED [ChEBI] +synonym: "superoxide dismutase (EC 1.15.1.1) inhibitor" RELATED [ChEBI] +synonym: "superoxide dismutase (EC 1.15.1.1) inhibitors" RELATED [ChEBI] +synonym: "superoxide dismutase I inhibitor" RELATED [ChEBI] +synonym: "superoxide dismutase I inhibitors" RELATED [ChEBI] +synonym: "superoxide dismutase II inhibitor" RELATED [ChEBI] +synonym: "superoxide dismutase II inhibitors" RELATED [ChEBI] +synonym: "superoxide dismutase inhibitor" RELATED [ChEBI] +synonym: "superoxide dismutase inhibitors" RELATED [ChEBI] +synonym: "superoxide:superoxide oxidoreductase inhibitor" RELATED [ChEBI] +synonym: "superoxide:superoxide oxidoreductase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76742 ! EC 1.15.* (oxidoreductase acting on superoxide as acceptor) inhibitor + +[Term] +id: CHEBI:134107 +name: CHIR-090 +namespace: chebi_ontology +def: "An L-threonine derivative obtained by formal condensation of the carboxy group of 4-({4-[(morpholin-4-yl)methyl]phenyl}ethynyl)benzoic acid with the amino group of N-hydroxy-L-threoninamide." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "437.195" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "437.489" RELATED MASS [ChEBI] +synonym: "C24H27N3O5" RELATED FORMULA [ChEBI] +synonym: "FQYBTYFKOHPWQT-VGSWGCGISA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C24H27N3O5/c1-17(28)22(24(30)26-31)25-23(29)21-10-8-19(9-11-21)3-2-18-4-6-20(7-5-18)16-27-12-14-32-15-13-27/h4-11,17,22,28,31H,12-16H2,1H3,(H,25,29)(H,26,30)/t17-,22+/m1/s1" RELATED InChI [ChEBI] +synonym: "N-[(2S,3R)-3-hydroxy-1-(hydroxyamino)-1-oxobutan-2-yl]-4-({4-[(morpholin-4-yl)methyl]phenyl}ethynyl)benzamide" EXACT IUPAC_NAME [IUPAC] +synonym: "O1CCN(CC1)CC2=CC=C(C=C2)C#CC3=CC=C(C(=O)N[C@@H]([C@H](O)C)C(=O)NO)C=C3" RELATED SMILES [ChEBI] +xref: colombos:CHIR-090 +xref: PMCID:PMC3197220 "Europe PMC" +xref: PMID:17335290 "Europe PMC" +xref: PMID:18025458 "Europe PMC" +xref: PMID:20516283 "Europe PMC" +xref: PMID:21171638 "Europe PMC" +xref: PMID:22024823 "Europe PMC" +xref: PMID:26833150 "Europe PMC" +xref: PMID:27330072 "Europe PMC" +xref: PMID:27526195 "Europe PMC" +xref: Reaxys:18777591 "Reaxys" +is_a: CHEBI:22702 ! benzamides +is_a: CHEBI:24650 ! hydroxamic acid +is_a: CHEBI:38785 ! morpholines +is_a: CHEBI:73474 ! acetylenic compound +is_a: CHEBI:84189 ! L-threonine derivative +relationship: has_role CHEBI:134108 ! lipopolysaccharide biosynthesis inhibitor +relationship: has_role CHEBI:134109 ! EC 3.5.1.108 (UDP-3-O-acyl-N-acetylglucosamine deacetylase) inhibitor +relationship: has_role CHEBI:33281 ! antimicrobial agent + +[Term] +id: CHEBI:134108 +name: lipopolysaccharide biosynthesis inhibitor +namespace: chebi_ontology +def: "Any compound that inhibits the biosynthesis of any lipopolysaccharide." [] +subset: 3_STAR +synonym: "lipopolysaccharide biosynthesis inhibitors" RELATED [ChEBI] +is_a: CHEBI:35222 ! inhibitor +is_a: CHEBI:52206 ! biochemical role + +[Term] +id: CHEBI:134109 +name: EC 3.5.1.108 (UDP-3-O-acyl-N-acetylglucosamine deacetylase) inhibitor +namespace: chebi_ontology +def: "An EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor that interferes with the action of UDP-3-O-acyl-N-acetylglucosamine deacetylase (EC 3.5.1.108)." [] +subset: 3_STAR +synonym: "deacetylase LpxC inhibitor" RELATED [ChEBI] +synonym: "deacetylase LpxC inhibitors" RELATED [ChEBI] +synonym: "EC 3.5.1.108 (UDP-3-O-acyl-N-acetylglucosamine deacetylase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.5.1.108 inhibitor" RELATED [ChEBI] +synonym: "EC 3.5.1.108 inhibitors" RELATED [ChEBI] +synonym: "LpxC deacetylase inhibitor" RELATED [ChEBI] +synonym: "LpxC deacetylase inhibitors" RELATED [ChEBI] +synonym: "LpxC enzyme inhibitor" RELATED [ChEBI] +synonym: "LpxC enzyme inhibitors" RELATED [ChEBI] +synonym: "LpxC inhibitor" RELATED [ChEBI] +synonym: "LpxC inhibitors" RELATED [ChEBI] +synonym: "UDP-(3-O-(R-3-hydroxymyristoyl))-N-acetylglucosamine deacetylase inhibitor" RELATED [ChEBI] +synonym: "UDP-(3-O-(R-3-hydroxymyristoyl))-N-acetylglucosamine deacetylase inhibitors" RELATED [ChEBI] +synonym: "UDP-(3-O-acyl)-N-acetylglucosamine deacetylase inhibitor" RELATED [ChEBI] +synonym: "UDP-(3-O-acyl)-N-acetylglucosamine deacetylase inhibitors" RELATED [ChEBI] +synonym: "UDP-3-O-((R)-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase inhibitor" RELATED [ChEBI] +synonym: "UDP-3-O-((R)-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase inhibitors" RELATED [ChEBI] +synonym: "UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase inhibitor" RELATED [ChEBI] +synonym: "UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase inhibitors" RELATED [ChEBI] +synonym: "UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-alpha-D-glucosamine amidohydrolase inhibitor" RELATED [ChEBI] +synonym: "UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-alpha-D-glucosamine amidohydrolase inhibitors" RELATED [ChEBI] +synonym: "UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetylglucosamine amidohydrolase inhibitor" RELATED [ChEBI] +synonym: "UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetylglucosamine amidohydrolase inhibitors" RELATED [ChEBI] +synonym: "UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase inhibitor" RELATED [ChEBI] +synonym: "UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase inhibitors" RELATED [ChEBI] +synonym: "UDP-3-O-acyl-GlcNAc deacetylase inhibitor" RELATED [ChEBI] +synonym: "UDP-3-O-acyl-GlcNAc deacetylase inhibitors" RELATED [ChEBI] +xref: Wikipedia:UDP-3-O-N-acetylglucosamine_deacetylase +is_a: CHEBI:76807 ! EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor + +[Term] +id: CHEBI:134179 +name: volatile organic compound +namespace: chebi_ontology +def: "Any organic compound having an initial boiling point less than or equal to 250 degreeC (482 degreeF) measured at a standard atmospheric pressure of 101.3 kPa." [] +subset: 3_STAR +synonym: "VOC" RELATED [ChEBI] +synonym: "VOCs" RELATED [ChEBI] +synonym: "volatile organic compounds" RELATED [ChEBI] +xref: colombos:VOC +xref: colombos:VOC\:-1+1 +xref: Wikipedia:Volatile_organic_compound +is_a: CHEBI:72695 ! organic molecule +property_value: MCO:0000190 "volatile organic compounds" xsd:string + +[Term] +id: CHEBI:134249 +name: alkanesulfonate oxoanion +namespace: chebi_ontology +alt_id: CHEBI:22318 +def: "An alkanesulfonate in which the carbon at position 1 is attached to R, which can represent hydrogens, a carbon chain, or other groups." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "93.972" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "94.091" RELATED MASS [ChEBI] +synonym: "alkanesulfonate oxoanions" RELATED [ChEBI] +synonym: "alkanesulfonates" RELATED [ChEBI] +synonym: "an alkanesulfonate" RELATED [UniProt] +synonym: "C(S([O-])(=O)=O)*" RELATED SMILES [ChEBI] +synonym: "CH2O3SR" RELATED FORMULA [ChEBI] +xref: MetaCyc:Alkanesulfonates +is_a: CHEBI:33554 ! organosulfonate oxoanion + +[Term] +id: CHEBI:134363 +name: tertiary amine oxide +namespace: chebi_ontology +def: "An N-oxide where there are three organic groups bonded to the nitrogen atom." [] +subset: 3_STAR +synonym: "*[N+](*)([O-])*" RELATED SMILES [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "29.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "30.006" RELATED MASS [ChEBI] +synonym: "NOR3" RELATED FORMULA [ChEBI] +synonym: "tertiary amine oxides" RELATED [ChEBI] +xref: Patent:EP0545208 +xref: Patent:EP0757983 +xref: Patent:EP0866058 +xref: Patent:EP1068179 +xref: Patent:US4206204 +xref: Patent:WO9950236 +is_a: CHEBI:35580 ! N-oxide +relationship: has_functional_parent CHEBI:50996 ! tertiary amino compound + +[Term] +id: CHEBI:134416 +name: 3-oxo fatty acid +namespace: chebi_ontology +def: "Any oxo fatty acid in which an oxo substituent is located at position 3." [] +subset: 3_STAR +synonym: "3-keto fatty acid" RELATED [ChEBI] +synonym: "3-keto fatty acids" RELATED [ChEBI] +synonym: "3-oxo fatty acids" RELATED [ChEBI] +is_a: CHEBI:47881 ! 3-oxo monocarboxylic acid +is_a: CHEBI:59644 ! oxo fatty acid +relationship: is_conjugate_acid_of CHEBI:133292 ! 3-oxo fatty acid anion + +[Term] +id: CHEBI:134438 +name: titanium oxides +namespace: chebi_ontology +def: "A class containing any titanium molecular entity that is an oxide of titanium." [] +subset: 3_STAR +synonym: "titanium oxide" RELATED [ChEBI] +is_a: CHEBI:37217 ! titanium molecular entity + +[Term] +id: CHEBI:134441 +name: titanium oxide nanoparticle +namespace: chebi_ontology +def: "A nanoparticle composed of any titanium oxide." [] +subset: 3_STAR +is_a: CHEBI:134438 ! titanium oxides +is_a: CHEBI:52855 ! inorganic nanoparticle + +[Term] +id: CHEBI:13643 +name: glycol +namespace: chebi_ontology +def: "A diol in which the two hydroxy groups are on different carbon atoms, usually but not necessarily adjacent." [] +subset: 3_STAR +synonym: "a glycol" RELATED [UniProt] +synonym: "glycols" EXACT IUPAC_NAME [IUPAC] +synonym: "Glykol" RELATED [ChEBI] +is_a: CHEBI:23824 ! diol + +[Term] +id: CHEBI:136622 +name: aci-nitro compound +namespace: chebi_ontology +def: "Organonitrogen compounds that have the general structure R(1)(R(2))C=N(O)OH (R(1),R(2) = H, organyl). They are tautomers of C-nitro compounds." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "59.001" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "59.024" RELATED MASS [ChEBI] +synonym: "aci-nitro compounds" RELATED [ChEBI] +synonym: "C(*)(=[N+](O)[O-])*" RELATED SMILES [ChEBI] +synonym: "CHNO2R2" RELATED FORMULA [ChEBI] +synonym: "oxime N-oxide" RELATED [ChEBI] +synonym: "oxime N-oxides" RELATED [ChEBI] +is_a: CHEBI:35352 ! organonitrogen compound +relationship: has_functional_parent CHEBI:25750 ! oxime +relationship: is_tautomer_of CHEBI:35716 ! C-nitro compound + +[Term] +id: CHEBI:136849 +name: 3-oxo-Delta(4)-steroid group +namespace: chebi_ontology +def: "An organic group derived from any 3-oxo-Delta(4)-steroid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "94.042" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "94.111" RELATED MASS [ChEBI] +synonym: "a 3-oxo-Delta4-steroid group" RELATED [UniProt] +synonym: "C1=C(C*)*C(CC1=O)*" RELATED SMILES [ChEBI] +synonym: "C6H6O" RELATED FORMULA [ChEBI] +is_a: CHEBI:33247 ! organic group + +[Term] +id: CHEBI:136859 +name: pro-agent +namespace: chebi_ontology +def: "A compound that, on administration, undergoes conversion by biochemical (enzymatic), chemical (possibly following an enzymatic step), or physical (e.g. photochemical) activation processes before becoming the active agent for which it is a pro-agent." [] +subset: 3_STAR +synonym: "pro-agents" RELATED [ChEBI] +synonym: "proagent" RELATED [ChEBI] +synonym: "proagents" RELATED [ChEBI] +xref: PMID:26449612 "Europe PMC" +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:136889 +name: 5beta steroid +namespace: chebi_ontology +subset: 1_STAR +synonym: "5beta steroids" RELATED [ChEBI] +synonym: "5beta-steroid" RELATED [ChEBI] +synonym: "5beta-steroids" RELATED [ChEBI] +is_a: CHEBI:35341 ! steroid + +[Term] +id: CHEBI:13705 +name: acetoacetate +namespace: chebi_ontology +def: "A 3-oxo monocarboxylic acid anion that is the conjugate base of acetoacetic acid, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "101.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "101.08070" RELATED MASS [ChEBI] +synonym: "3-oxobutanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "Acetoacetate" EXACT [KEGG_COMPOUND] +synonym: "acetoacetate" EXACT [UniProt] +synonym: "Acetoacetate ion(1-)" RELATED [ChemIDplus] +synonym: "Butanoic acid, 3-oxo-, ion(1-)" RELATED [ChemIDplus] +synonym: "C4H5O3" RELATED FORMULA [ChEBI] +synonym: "CC(=O)CC([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C4H6O3/c1-3(5)2-4(6)7/h2H2,1H3,(H,6,7)/p-1" RELATED InChI [ChEBI] +synonym: "WDJHALXBUFZDSR-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:4128534 "Beilstein" +xref: CAS:141-81-1 "ChemIDplus" +xref: KEGG:C00164 +xref: MetaCyc:3-KETOBUTYRATE +xref: Reaxys:4128534 "Reaxys" +xref: UM-BBD_compID:c0069 "UM-BBD" +is_a: CHEBI:133292 ! 3-oxo fatty acid anion +relationship: has_functional_parent CHEBI:17968 ! butyrate +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:15344 ! acetoacetic acid + +[Term] +id: CHEBI:137081 +name: CORM 3 +namespace: chebi_ontology +def: "Water-soluble carbon monoxide-releasing molecule." [] +subset: 2_STAR +synonym: "0" RELATED CHARGE [SUBMITTER] +synonym: "292.591" RELATED MASS [SUBMITTER] +synonym: "292.866" RELATED MONOISOTOPIC_MASS [SUBMITTER] +synonym: "[Ru+2]1([Cl-])([O-]C(=O)C[N]1)([C]=O)([C]=O)[C]=O" RELATED SMILES [ChEBI] +synonym: "C5H2ClNO5Ru" RELATED FORMULA [SUBMITTER] +synonym: "Carbon monoxide releasing molecule 3" RELATED [SUBMITTER] +synonym: "InChI=1S/C2H3NO2.3CO.ClH.Ru/c3-1-2(4)5;3*1-2;;/h1H2,(H,4,5);;;;1H;/q;;;;;+2/p-2" RELATED InChI [ChEBI] +synonym: "Tricarbonylchloro(glycinato)ruthenium" RELATED [SUBMITTER] +synonym: "UQJJDVOKPPHMJI-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +xref: CAS:475473-26-8 "SUBMITTER" +xref: colombos:CORM-3 +xref: PDBeChem:318487530 "SUBMITTER" +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:137980 +name: metalloid atom +namespace: chebi_ontology +def: "An atom of an element that exhibits properties that are between those of metals and nonmetals, or that has a mixture of them. The term generally includes boron, silicon, germanium, arsenic, antimony, and tellurium, while carbon, aluminium, selenium, polonium, and astatine are less commonly included." [] +subset: 3_STAR +synonym: "metalloid" RELATED [ChEBI] +synonym: "metalloids" RELATED [ChEBI] +xref: Wikipedia:Metalloid +is_a: CHEBI:33250 ! atom + +[Term] +id: CHEBI:137982 +name: tertiary amine(1+) +namespace: chebi_ontology +def: "A compound formally derived from ammonium by replacing three hydrogen atoms by hydrocarbyl groups." [] +subset: 2_STAR +synonym: "+1" RELATED CHARGE [SUBMITTER] +synonym: "15.011" RELATED MONOISOTOPIC_MASS [SUBMITTER] +synonym: "15.015" RELATED MASS [SUBMITTER] +synonym: "[NH+](*)(*)*" RELATED SMILES [ChEBI] +synonym: "a tertiary amine" RELATED [UniProt] +synonym: "HNR3" RELATED FORMULA [SUBMITTER] +is_a: CHEBI:50860 ! organic molecular entity +relationship: is_conjugate_acid_of CHEBI:32876 ! tertiary amine + +[Term] +id: CHEBI:138015 +name: endocrine disruptor +namespace: chebi_ontology +def: "Any compound that can disrupt the functions of the endocrine (hormone) system" [] +subset: 3_STAR +synonym: "endocrine disrupting chemical" RELATED [ChEBI] +synonym: "endocrine disrupting chemicals" RELATED [ChEBI] +synonym: "endocrine disrupting compound" RELATED [ChEBI] +synonym: "endocrine disrupting compounds" RELATED [ChEBI] +synonym: "endocrine disruptors" RELATED [ChEBI] +synonym: "endocrine-disrupting chemical" RELATED [ChEBI] +synonym: "endocrine-disrupting chemicals" RELATED [ChEBI] +synonym: "hormonally active agent" RELATED [ChEBI] +synonym: "hormonally active agents" RELATED [ChEBI] +xref: PMID:27929035 "Europe PMC" +xref: PMID:28356401 "Europe PMC" +xref: PMID:28526231 "Europe PMC" +xref: Wikipedia:Endocrine_disruptor +is_a: CHEBI:51061 ! hormone receptor modulator + +[Term] +id: CHEBI:13941 +name: carbamate +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "60.009" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "60.03212" RELATED MASS [ChEBI] +synonym: "Carbamat" RELATED [ChEBI] +synonym: "carbamate" EXACT [UniProt] +synonym: "carbamate" EXACT IUPAC_NAME [IUPAC] +synonym: "carbamate ion" RELATED [ChemIDplus] +synonym: "carbamic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "CH2NO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)/p-1" RELATED InChI [ChEBI] +synonym: "Karbamat" RELATED [ChEBI] +synonym: "KXDHJXZQYSOELW-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "NC([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:3903503 "Beilstein" +xref: CAS:302-11-4 "ChemIDplus" +xref: Gmelin:239604 "Gmelin" +is_a: CHEBI:37022 ! amino-acid anion +relationship: is_conjugate_base_of CHEBI:28616 ! carbamic acid + +[Term] +id: CHEBI:14314 +name: D-glucose 6-phosphate +namespace: chebi_ontology +def: "A D-glucose monophosphate in which the phosphate group is attached to position 6." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "260.13578" RELATED MASS [ChEBI] +synonym: "6-O-phosphono-D-glucose" RELATED [IUPAC] +synonym: "C6H13O9P" RELATED FORMULA [ChEBI] +synonym: "D-glucose 6-(dihydrogen phosphate)" RELATED [IUPAC] +is_a: CHEBI:17348 ! D-aldohexose 6-phosphate +is_a: CHEBI:21006 ! D-glucose monophosphate +relationship: has_role CHEBI:78675 ! fundamental metabolite + +[Term] +id: CHEBI:14336 +name: glycerol 1-phosphate +namespace: chebi_ontology +def: "A glycerol monophosphate having the phosphate group located at position 1." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,2,3-propanetriol, 1-(dihydrogen phosphate)" RELATED [ChemIDplus] +synonym: "1-glycerophosphate" RELATED [ChemIDplus] +synonym: "1-glycerophosphoric acid" RELATED [ChemIDplus] +synonym: "1-phosphoglycerol" RELATED [ChEBI] +synonym: "172.014" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "172.07370" RELATED MASS [ChEBI] +synonym: "2,3-dihydroxypropyl dihydrogen phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "2,3-dihydroxypropyl dihydrogen phosphate" RELATED [ChEBI] +synonym: "2,3-hydroxy-1-propyl dihydrogen phosphate" RELATED [ChemIDplus] +synonym: "3-glycerophosphate" RELATED [ChemIDplus] +synonym: "alpha-glycerophosphoric acid" RELATED [ChemIDplus] +synonym: "alpha-phosphoglycerol" RELATED [ChemIDplus] +synonym: "AWUCVROLDVIAJX-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "C3H9O6P" RELATED FORMULA [ChEBI] +synonym: "D,L-alpha-glycerol-phosphate" RELATED [MetaCyc] +synonym: "DL-glycerol 1-phosphate" RELATED [MetaCyc] +synonym: "DL-Glycerol 3-phosphate" RELATED [HMDB] +synonym: "DL-Glycerol 3-phosphate" RELATED [KEGG_COMPOUND] +synonym: "DL-Glyceryl 1-phosphate" RELATED [KEGG_COMPOUND] +synonym: "glycerol 1-(dihydrogen phosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "Glycerol 1-phosphate" EXACT [KEGG_COMPOUND] +synonym: "glycerol alpha-phosphate" RELATED [ChemIDplus] +synonym: "InChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)" RELATED InChI [ChEBI] +synonym: "OCC(O)COP(O)(O)=O" RELATED SMILES [ChEBI] +synonym: "PG" RELATED [ChEBI] +synonym: "rac-Glycerol 1-phosphate" RELATED [KEGG_COMPOUND] +xref: CAS:57-03-4 "KEGG COMPOUND" +xref: HMDB:HMDB00126 +xref: KEGG:C03189 +xref: MetaCyc:Glycerol-1-phosphate +xref: PMID:1694860 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:6083437 "Europe PMC" +xref: Reaxys:1723974 "Reaxys" +xref: Wikipedia:Glycerol_1-phosphate +is_a: CHEBI:16890 ! glycerol monophosphate +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_acid_of CHEBI:231935 ! glycerol 1-phosphate(2-) + +[Term] +id: CHEBI:15138 +name: sulfide(2-) +namespace: chebi_ontology +def: "A divalent inorganic anion obtained by removal of both protons from hydrogen sulfide." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "31.972" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "32.06600" RELATED MASS [ChEBI] +synonym: "[S--]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/S/q-2" RELATED InChI [ChEBI] +synonym: "S" RELATED FORMULA [ChEBI] +synonym: "S(2-)" RELATED [IUPAC] +synonym: "sulfanediide" EXACT IUPAC_NAME [IUPAC] +synonym: "Sulfide" RELATED [ChemIDplus] +synonym: "sulfide" RELATED [UniProt] +synonym: "sulfide(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "sulphide" RELATED [ChEBI] +synonym: "UCKMPCXJQFINFW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:18496-25-8 "ChemIDplus" +xref: UM-BBD_compID:c0569 "UM-BBD" +is_a: CHEBI:79388 ! divalent inorganic anion +relationship: is_conjugate_base_of CHEBI:29919 ! hydrosulfide + +[Term] +id: CHEBI:15193 +name: tartrate(2-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "148.07096" RELATED MASS [ChEBI] +synonym: "C4H4O6" RELATED FORMULA [ChEBI] +synonym: "rel-(2R,3R)-2,3-dihydroxybutanedioate" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:5740673 "Beilstein" +is_a: CHEBI:30929 ! 2,3-dihydroxybutanedioate +relationship: is_conjugate_base_of CHEBI:35397 ! tartrate(1-) + +[Term] +id: CHEBI:15339 +name: acceptor +namespace: chebi_ontology +alt_id: CHEBI:13699 +alt_id: CHEBI:2377 +def: "A molecular entity that can accept an electron, a pair of electrons, an atom or a group from another molecular entity." [] +subset: 3_STAR +synonym: "A" RELATED [KEGG_COMPOUND] +synonym: "accepteur" RELATED [ChEBI] +synonym: "Acceptor" EXACT [KEGG_COMPOUND] +synonym: "acceptor" EXACT [UniProt] +synonym: "Akzeptor" RELATED [ChEBI] +synonym: "Hydrogen-acceptor" RELATED [KEGG_COMPOUND] +synonym: "Oxidized donor" RELATED [KEGG_COMPOUND] +xref: KEGG:C00028 +xref: KEGG:C16722 +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:15344 +name: acetoacetic acid +namespace: chebi_ontology +alt_id: CHEBI:22172 +alt_id: CHEBI:2391 +alt_id: CHEBI:40507 +def: "A 3-oxo monocarboxylic acid that is butyric acid bearing a 3-oxo substituent." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "102.032" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "102.08864" RELATED MASS [ChEBI] +synonym: "3-ketobutanoic acid" RELATED [ChEBI] +synonym: "3-Ketobutyric acid" RELATED [HMDB] +synonym: "3-Oxobutanoic acid" RELATED [KEGG_COMPOUND] +synonym: "3-oxobutanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "3-Oxobutyric acid" RELATED [ChemIDplus] +synonym: "Acetoacetic acid" EXACT [KEGG_COMPOUND] +synonym: "beta-Ketobutyric acid" RELATED [KEGG_COMPOUND] +synonym: "C4H6O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(=O)CC(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C4H6O3/c1-3(5)2-4(6)7/h2H2,1H3,(H,6,7)" RELATED InChI [ChEBI] +synonym: "WDJHALXBUFZDSR-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1747690 "Beilstein" +xref: CAS:541-50-4 "KEGG COMPOUND" +xref: DrugBank:DB01762 +xref: HMDB:HMDB00060 +xref: KEGG:C00164 +xref: KNApSAcK:C00007458 +xref: LIPID_MAPS_instance:LMFA01060003 "LIPID MAPS" +xref: MetaCyc:3-KETOBUTYRATE +xref: PMID:17190852 "Europe PMC" +xref: PMID:20444635 "Europe PMC" +xref: PMID:21806064 "Europe PMC" +xref: PMID:22382897 "Europe PMC" +xref: PMID:3884391 "Europe PMC" +xref: Reaxys:1747690 "Reaxys" +xref: UM-BBD_compID:c0069 "ChEBI" +xref: Wikipedia:Acetoacetic_acid +is_a: CHEBI:134416 ! 3-oxo fatty acid +is_a: CHEBI:73693 ! ketone body +relationship: has_functional_parent CHEBI:30772 ! butyric acid +relationship: is_conjugate_acid_of CHEBI:13705 ! acetoacetate +relationship: is_tautomer_of CHEBI:131367 ! 3-hydroxy-3-butenoic acid + +[Term] +id: CHEBI:15346 +name: coenzyme A +namespace: chebi_ontology +alt_id: CHEBI:13294 +alt_id: CHEBI:13295 +alt_id: CHEBI:13298 +alt_id: CHEBI:23355 +alt_id: CHEBI:3771 +alt_id: CHEBI:41597 +alt_id: CHEBI:41631 +alt_id: CHEBI:741566 +def: "A thiol comprising a panthothenate unit in phosphoric anhydride linkage with a 3',5'-adenosine diphosphate unit; and an aminoethanethiol unit." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3'-phosphoadenosine 5'-{3-[(3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-({3-oxo-3-[(2-sulfanylethyl)amino]propyl}amino)butyl] dihydrogen diphosphate}" EXACT IUPAC_NAME [IUPAC] +synonym: "3'-phosphoadenosine-(5')diphospho(4')pantatheine" RELATED [ChEBI] +synonym: "767.115" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "767.53540" RELATED MASS [ChEBI] +synonym: "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R)-3-hydroxy-4-({3-oxo-3-[(2-sulfanylethyl)amino]propyl}amino)-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate" RELATED [ChEBI] +synonym: "C21H36N7O16P3S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCS" RELATED SMILES [ChEBI] +synonym: "CoA" RELATED [KEGG_COMPOUND] +synonym: "CoA-SH" RELATED [KEGG_COMPOUND] +synonym: "CoASH" RELATED [ChEBI] +synonym: "Coenzym A" RELATED [ChEBI] +synonym: "COENZYME A" EXACT [PDBeChem] +synonym: "Coenzyme A" EXACT [KEGG_COMPOUND] +synonym: "HSCoA" RELATED [ChEBI] +synonym: "InChI=1S/C21H36N7O16P3S/c1-21(2,16(31)19(32)24-4-3-12(29)23-5-6-48)8-41-47(38,39)44-46(36,37)40-7-11-15(43-45(33,34)35)14(30)20(42-11)28-10-27-13-17(22)25-9-26-18(13)28/h9-11,14-16,20,30-31,48H,3-8H2,1-2H3,(H,23,29)(H,24,32)(H,36,37)(H,38,39)(H2,22,25,26)(H2,33,34,35)/t11-,14-,15-,16+,20-/m1/s1" RELATED InChI [ChEBI] +synonym: "Koenzym A" RELATED [ChEBI] +synonym: "RGJOEKWQDUBAIZ-IBOSZNHHSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:77809 "Beilstein" +xref: CAS:85-61-0 "KEGG COMPOUND" +xref: DrugBank:DB01992 +xref: KEGG:C00010 +xref: KNApSAcK:C00007258 +xref: PDBeChem:COA +xref: PDBeChem:COZ +xref: PMID:11923312 "Europe PMC" +xref: PMID:13025483 "Europe PMC" +xref: PMID:15014152 "Europe PMC" +xref: PMID:15893380 "Europe PMC" +xref: PMID:18407920 "Europe PMC" +xref: PMID:19666462 "Europe PMC" +xref: PMID:20351285 "Europe PMC" +xref: PMID:2981478 "Europe PMC" +xref: PMID:7310833 "ChEMBL" +xref: Wikipedia:Coenzyme_A +is_a: CHEBI:37240 ! adenosine 3',5'-bisphosphate +relationship: has_functional_parent CHEBI:16761 ! ADP +relationship: has_role CHEBI:23354 ! coenzyme +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:57287 ! coenzyme A(4-) + +[Term] +id: CHEBI:15351 +name: acetyl-CoA +namespace: chebi_ontology +alt_id: CHEBI:13712 +alt_id: CHEBI:22192 +alt_id: CHEBI:2408 +alt_id: CHEBI:40470 +def: "An acyl-CoA having acetyl as its S-acetyl component." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3'-phosphoadenosine 5'-(3-{(3R)-4-[(3-{[2-(acetylsulfanyl)ethyl]amino}-3-oxopropyl)amino]-3-hydroxy-2,2-dimethyl-4-oxobutyl} dihydrogen diphosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "809.126" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "809.57208" RELATED MASS [ChEBI] +synonym: "AcCoA" RELATED [ChEBI] +synonym: "Acetyl coenzyme A" RELATED [KEGG_COMPOUND] +synonym: "Acetyl-CoA" EXACT [KEGG_COMPOUND] +synonym: "C23H38N7O17P3S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)n1cnc2c(N)ncnc12" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C23H38N7O17P3S/c1-12(31)51-7-6-25-14(32)4-5-26-21(35)18(34)23(2,3)9-44-50(41,42)47-49(39,40)43-8-13-17(46-48(36,37)38)16(33)22(45-13)30-11-29-15-19(24)27-10-28-20(15)30/h10-11,13,16-18,22,33-34H,4-9H2,1-3H3,(H,25,32)(H,26,35)(H,39,40)(H,41,42)(H2,24,27,28)(H2,36,37,38)/t13-,16-,17-,18+,22-/m1/s1" RELATED InChI [ChEBI] +synonym: "S-acetyl-CoA" RELATED [ChEBI] +synonym: "S-acetyl-coenzyme A" RELATED [ChEBI] +synonym: "ZSLZBFCDCINBPY-ZSJPKINUSA-N" RELATED InChIKey [ChEBI] +xref: CAS:72-89-9 "KEGG COMPOUND" +xref: ECMDB:ECMDB01206 +xref: HMDB:HMDB01206 +xref: KEGG:C00024 +xref: KNApSAcK:C00007259 +xref: PDBeChem:ACO +xref: PMID:12527305 "Europe PMC" +xref: PMID:12739170 "Europe PMC" +xref: PMID:15247244 "Europe PMC" +xref: PMID:16101314 "Europe PMC" +xref: PMID:16667687 "Europe PMC" +xref: PMID:16708165 "Europe PMC" +xref: PMID:17189273 "Europe PMC" +xref: PMID:17242360 "Europe PMC" +xref: PMID:17631502 "Europe PMC" +xref: PMID:18613815 "Europe PMC" +xref: PMID:19356710 "Europe PMC" +xref: PMID:19596230 "Europe PMC" +xref: PMID:19914586 "Europe PMC" +xref: PMID:3950616 "Europe PMC" +xref: Reaxys:78145 "Reaxys" +xref: UM-BBD_compID:c0031 "ChEBI" +xref: Wikipedia:Acetyl-CoA +xref: YMDB:YMDB00312 +is_a: CHEBI:17984 ! acyl-CoA +relationship: has_functional_parent CHEBI:15366 ! acetic acid +relationship: has_role CHEBI:23354 ! coenzyme +relationship: has_role CHEBI:35224 ! effector +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:57288 ! acetyl-CoA(4-) + +[Term] +id: CHEBI:15354 +name: choline +namespace: chebi_ontology +alt_id: CHEBI:13985 +alt_id: CHEBI:23212 +alt_id: CHEBI:3665 +alt_id: CHEBI:41524 +def: "A choline that is the parent compound of the cholines class, consisting of ethanolamine having three methyl substituents attached to the amino function." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "104.108" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "104.17080" RELATED MASS [ChEBI] +synonym: "2-hydroxy-N,N,N-trimethylethanaminium" EXACT IUPAC_NAME [IUPAC] +synonym: "Bilineurine" RELATED [KEGG_COMPOUND] +synonym: "C5H14NO" RELATED FORMULA [ChEBI] +synonym: "C[N+](C)(C)CCO" RELATED SMILES [ChEBI] +synonym: "Choline" EXACT [KEGG_COMPOUND] +synonym: "choline" EXACT [UniProt] +synonym: "CHOLINE ION" RELATED [PDBeChem] +synonym: "InChI=1S/C5H14NO/c1-6(2,3)4-5-7/h7H,4-5H2,1-3H3/q+1" RELATED InChI [ChEBI] +synonym: "N,N,N-trimethylethanol-ammonium" RELATED [ChEBI] +synonym: "N-trimethylethanolamine" RELATED [ChEBI] +synonym: "OEYIOHPDSNJKLS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "trimethylethanolamine" RELATED [ChEBI] +xref: Beilstein:1736748 "Beilstein" +xref: CAS:62-49-7 "KEGG COMPOUND" +xref: Drug_Central:3097 "DrugCentral" +xref: DrugBank:DB00122 +xref: ECMDB:ECMDB00097 +xref: Gmelin:324597 "Gmelin" +xref: HMDB:HMDB00097 +xref: KEGG:C00114 +xref: KEGG:D07690 +xref: KNApSAcK:C00007298 +xref: MetaCyc:CHOLINE +xref: PDBeChem:CHT +xref: PMID:10930630 "Europe PMC" +xref: PMID:12826235 "Europe PMC" +xref: PMID:12946691 "Europe PMC" +xref: PMID:14972364 "Europe PMC" +xref: PMID:16210714 "Europe PMC" +xref: PMID:17087106 "Europe PMC" +xref: PMID:17283071 "Europe PMC" +xref: PMID:17344490 "Europe PMC" +xref: PMID:18204095 "Europe PMC" +xref: PMID:18230680 "Europe PMC" +xref: PMID:18786517 "Europe PMC" +xref: PMID:18786520 "Europe PMC" +xref: PMID:19246089 "Europe PMC" +xref: PMID:20038853 "Europe PMC" +xref: PMID:20446114 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:22961562 "Europe PMC" +xref: PMID:23095202 "Europe PMC" +xref: PMID:23616508 "Europe PMC" +xref: PMID:23637565 "Europe PMC" +xref: PMID:23733158 "Europe PMC" +xref: PMID:6420466 "Europe PMC" +xref: PMID:7590654 "Europe PMC" +xref: PMID:9517478 "Europe PMC" +xref: Reaxys:1736748 "Reaxys" +xref: Wikipedia:Choline +xref: YMDB:YMDB00227 +is_a: CHEBI:23217 ! cholines +relationship: has_role CHEBI:25512 ! neurotransmitter +relationship: has_role CHEBI:33284 ! nutrient +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite + +[Term] +id: CHEBI:15356 +name: cysteine +namespace: chebi_ontology +alt_id: CHEBI:14061 +alt_id: CHEBI:23508 +alt_id: CHEBI:4050 +def: "A sulfur-containing amino acid that is propanoic acid with an amino group at position 2 and a sulfanyl group at position 3." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "121.020" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "121.15922" RELATED MASS [ChEBI] +synonym: "2-amino-3-mercaptopropanoic acid" RELATED [JCBN] +synonym: "2-Amino-3-mercaptopropionic acid" RELATED [KEGG_COMPOUND] +synonym: "2-amino-3-sulfanylpropanoic acid" RELATED [IUPAC] +synonym: "C" RELATED [ChEBI] +synonym: "C3H7NO2S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "cisteina" RELATED [ChEBI] +synonym: "Cys" RELATED [ChEBI] +synonym: "Cystein" RELATED [ChEBI] +synonym: "Cysteine" EXACT [KEGG_COMPOUND] +synonym: "cysteine" EXACT IUPAC_NAME [IUPAC] +synonym: "cysteine" EXACT [ChEBI] +synonym: "Hcys" RELATED [IUPAC] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)" RELATED InChI [ChEBI] +synonym: "NC(CS)C(O)=O" RELATED SMILES [ChEBI] +synonym: "XUJNEKJLAYXESH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Zystein" RELATED [ChEBI] +xref: Beilstein:1721406 "Beilstein" +xref: CAS:3374-22-9 "KEGG COMPOUND" +xref: colombos:CYSTEINE +xref: colombos:CYSTEINE\:+UNKNOWNg/L +xref: Gmelin:2933 "Gmelin" +xref: KEGG:C00736 +xref: KNApSAcK:C00001351 +xref: KNApSAcK:C00007323 +xref: PMID:17439666 "Europe PMC" +xref: PMID:25181601 "Europe PMC" +xref: Reaxys:1721406 "Reaxys" +xref: Wikipedia:Cysteine +is_a: CHEBI:26834 ! sulfur-containing amino acid +is_a: CHEBI:33704 ! alpha-amino acid +relationship: has_part CHEBI:50326 ! sulfanylmethyl group +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:32456 ! cysteinate(1-) +relationship: is_conjugate_base_of CHEBI:32458 ! cysteinium +relationship: is_tautomer_of CHEBI:35237 ! cysteine zwitterion + +[Term] +id: CHEBI:15361 +name: pyruvate +namespace: chebi_ontology +alt_id: CHEBI:14987 +alt_id: CHEBI:26462 +def: "A 2-oxo monocarboxylic acid anion that is the conjugate base of pyruvic acid, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "2-oxopropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "2-oxopropanoate" RELATED [ChEBI] +synonym: "2-oxopropanoic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "87.008" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "87.05412" RELATED MASS [ChEBI] +synonym: "C3H3O3" RELATED FORMULA [ChEBI] +synonym: "CC(=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H4O3/c1-2(4)3(5)6/h1H3,(H,5,6)/p-1" RELATED InChI [ChEBI] +synonym: "LCTONWCANYUPML-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "pyruvate" EXACT [UniProt] +xref: Beilstein:3587721 "Beilstein" +xref: CAS:57-60-3 "ChemIDplus" +xref: colombos:PYRUVATE +xref: Gmelin:2502 "Gmelin" +xref: KEGG:C00022 "ChEBI" +xref: PMID:17190852 "Europe PMC" +xref: PMID:21603897 "Europe PMC" +xref: PMID:21823181 "Europe PMC" +xref: PMID:21854850 "Europe PMC" +xref: PMID:22006570 "Europe PMC" +xref: PMID:22016370 "Europe PMC" +xref: PMID:22215378 "Europe PMC" +xref: PMID:22311625 "Europe PMC" +xref: PMID:22451307 "Europe PMC" +xref: PMID:22458763 "Europe PMC" +xref: Reaxys:3587721 "Reaxys" +xref: UM-BBD_compID:c0159 "ChEBI" +is_a: CHEBI:35179 ! 2-oxo monocarboxylic acid anion +relationship: has_functional_parent CHEBI:17272 ! propionate +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:32816 ! pyruvic acid + +[Term] +id: CHEBI:15366 +name: acetic acid +namespace: chebi_ontology +alt_id: CHEBI:22169 +alt_id: CHEBI:2387 +alt_id: CHEBI:40486 +def: "A simple monocarboxylic acid containing two carbons." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "60.021" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "60.05200" RELATED MASS [ChEBI] +synonym: "ACETIC ACID" EXACT [PDBeChem] +synonym: "Acetic acid" EXACT [KEGG_COMPOUND] +synonym: "acetic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "acide acetique" RELATED [ChemIDplus] +synonym: "AcOH" RELATED [ChEBI] +synonym: "C2H4O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(O)=O" RELATED SMILES [ChEBI] +synonym: "CH3-COOH" RELATED [IUPAC] +synonym: "CH3CO2H" RELATED [ChEBI] +synonym: "E 260" RELATED [ChEBI] +synonym: "E-260" RELATED [ChEBI] +synonym: "E260" RELATED [ChEBI] +synonym: "Essigsaeure" RELATED [ChEBI] +synonym: "Ethanoic acid" RELATED [KEGG_COMPOUND] +synonym: "ethoic acid" RELATED [ChEBI] +synonym: "Ethylic acid" RELATED [ChemIDplus] +synonym: "HOAc" RELATED [ChEBI] +synonym: "InChI=1S/C2H4O2/c1-2(3)4/h1H3,(H,3,4)" RELATED InChI [ChEBI] +synonym: "INS No. 260" RELATED [ChEBI] +synonym: "MeCO2H" RELATED [ChEBI] +synonym: "MeCOOH" RELATED [ChEBI] +synonym: "Methanecarboxylic acid" RELATED [ChemIDplus] +synonym: "QTBSBXVTEAMEQO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:506007 "Beilstein" +xref: CAS:64-19-7 "KEGG COMPOUND" +xref: Drug_Central:4211 "DrugCentral" +xref: Gmelin:1380 "Gmelin" +xref: HMDB:HMDB00042 +xref: KEGG:C00033 +xref: KEGG:D00010 +xref: KNApSAcK:C00001176 +xref: LIPID_MAPS_instance:LMFA01010002 "LIPID MAPS" +xref: MetaCyc:ACET +xref: PDBeChem:ACT +xref: PDBeChem:ACY +xref: PMID:12005138 "Europe PMC" +xref: PMID:15107950 "Europe PMC" +xref: PMID:16630552 "Europe PMC" +xref: PMID:16774200 "Europe PMC" +xref: PMID:17190852 "Europe PMC" +xref: PMID:19416101 "Europe PMC" +xref: PMID:19469536 "Europe PMC" +xref: PMID:22153255 "Europe PMC" +xref: PMID:22173419 "Europe PMC" +xref: Reaxys:506007 "Reaxys" +xref: Wikipedia:Acetic_acid +is_a: CHEBI:25384 ! monocarboxylic acid +relationship: has_role CHEBI:48356 ! protic solvent +relationship: has_role CHEBI:64049 ! food acidity regulator +relationship: has_role CHEBI:65256 ! antimicrobial food preservative +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_conjugate_acid_of CHEBI:30089 ! acetate +relationship: MCO:0000858 MCO:0000864 ! sucrose 15% carbon source + +[Term] +id: CHEBI:15379 +name: dioxygen +namespace: chebi_ontology +alt_id: CHEBI:10745 +alt_id: CHEBI:13416 +alt_id: CHEBI:23833 +alt_id: CHEBI:25366 +alt_id: CHEBI:30491 +alt_id: CHEBI:44742 +alt_id: CHEBI:7860 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "31.990" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "31.99880" RELATED MASS [ChEBI] +synonym: "[OO]" RELATED [MolBase] +synonym: "dioxygen" EXACT IUPAC_NAME [IUPAC] +synonym: "dioxygene" RELATED [ChEBI] +synonym: "Disauerstoff" RELATED [ChEBI] +synonym: "E 948" RELATED [ChEBI] +synonym: "E-948" RELATED [ChEBI] +synonym: "E948" RELATED [ChEBI] +synonym: "InChI=1S/O2/c1-2" RELATED InChI [ChEBI] +synonym: "molecular oxygen" RELATED [ChEBI] +synonym: "MYMOFIZGZYHOMD-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "O2" RELATED [UniProt] +synonym: "O2" RELATED [IUPAC] +synonym: "O2" RELATED [KEGG_COMPOUND] +synonym: "O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "O=O" RELATED SMILES [ChEBI] +synonym: "Oxygen" RELATED [KEGG_COMPOUND] +synonym: "OXYGEN MOLECULE" RELATED [PDBeChem] +xref: CAS:7782-44-7 "KEGG COMPOUND" +xref: colombos:OXYGEN +xref: Gmelin:485 "Gmelin" +xref: HMDB:HMDB01377 +xref: KEGG:C00007 +xref: KEGG:D00003 +xref: MetaCyc:OXYGEN-MOLECULE +xref: MolBase:750 +xref: PDBeChem:OXY +xref: PMID:10906528 "Europe PMC" +xref: PMID:16977326 "Europe PMC" +xref: PMID:18210929 "Europe PMC" +xref: PMID:18638417 "Europe PMC" +xref: PMID:19840863 "Europe PMC" +xref: PMID:7710549 "Europe PMC" +xref: PMID:9463773 "Europe PMC" +xref: Wikipedia:Oxygen +is_a: CHEBI:25362 ! elemental molecule +is_a: CHEBI:33263 ! diatomic oxygen +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:33893 ! reagent +relationship: has_role CHEBI:35472 ! anti-inflammatory drug +relationship: has_role CHEBI:63248 ! oxidising agent +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:77974 ! food packaging gas +relationship: is_conjugate_base_of CHEBI:29793 ! hydridodioxygen(1+) + +[Term] +id: CHEBI:15414 +name: S-adenosyl-L-methionine +namespace: chebi_ontology +alt_id: CHEBI:10786 +alt_id: CHEBI:10833 +alt_id: CHEBI:12742 +alt_id: CHEBI:12757 +alt_id: CHEBI:12760 +alt_id: CHEBI:22036 +alt_id: CHEBI:45607 +alt_id: CHEBI:527887 +alt_id: CHEBI:8946 +def: "A sulfonium compound that is the S-adenosyl derivative of L-methionine. It is an intermediate in the metabolic pathway of methionine." [] +subset: 3_STAR +synonym: "(3S)-5'-[(3-amino-3-carboxypropyl)methylsulfonio]-5'-deoxyadenosine, inner salt" RELATED [ChemIDplus] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "399.145" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "399.44500" RELATED MASS [ChEBI] +synonym: "[(3S)-3-amino-3-carboxypropyl](5'-deoxyadenosin-5'-yl)(methyl)sulfonium" EXACT IUPAC_NAME [IUPAC] +synonym: "[1-(adenin-9-yl)-1,5-dideoxy-beta-D-ribofuranos-5-yl][(3S)-3-amino-3-carboxypropyl](methyl)sulfonium" RELATED [IUPAC] +synonym: "Acylcarnitine" RELATED [KEGG_COMPOUND] +synonym: "AdoMet" RELATED [JCBN] +synonym: "C15H23N6O5S" RELATED FORMULA [ChEBI] +synonym: "C[S+](CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/p+1/t7-,8+,10+,11+,14+,27?/m0/s1" RELATED InChI [ChEBI] +synonym: "MEFKEPWMEQBLKI-AIRLBKTGSA-O" RELATED InChIKey [ChEBI] +synonym: "S-(5'-deoxyadenosin-5'-yl)-L-methionine" RELATED [JCBN] +synonym: "S-Adenosyl-L-methionine" EXACT [KEGG_COMPOUND] +synonym: "S-adenosyl-L-methionine" EXACT [ChEBI] +synonym: "S-Adenosylmethionine" RELATED [KEGG_COMPOUND] +synonym: "S-adenosylmethionine" RELATED [ChEBI] +synonym: "SAM" RELATED [JCBN] +synonym: "SAMe" RELATED [ChemIDplus] +xref: Beilstein:3576439 "Beilstein" +xref: CAS:29908-03-0 "KEGG COMPOUND" +xref: COMe:MOL000172 +xref: DrugBank:DB00118 +xref: HMDB:HMDB01185 +xref: KEGG:C00019 +xref: KNApSAcK:C00007347 +xref: MetaCyc:S-ADENOSYLMETHIONINE +xref: PMID:11017945 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: Reaxys:3919754 "Reaxys" +xref: Wikipedia:S-Adenosyl_methionine +is_a: CHEBI:26830 ! sulfonium compound +relationship: has_role CHEBI:131604 ! Mycoplasma genitalium metabolite +relationship: has_role CHEBI:23354 ! coenzyme +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:67040 ! S-adenosyl-L-methioninate +relationship: is_tautomer_of CHEBI:59789 ! S-adenosyl-L-methionine zwitterion + +[Term] +id: CHEBI:15422 +name: ATP +namespace: chebi_ontology +alt_id: CHEBI:10789 +alt_id: CHEBI:10841 +alt_id: CHEBI:13236 +alt_id: CHEBI:22249 +alt_id: CHEBI:2359 +alt_id: CHEBI:40938 +def: "An adenosine 5'-phosphate in which the 5'-phosphate is a triphosphate group. It is involved in the transportation of chemical energy during metabolic pathways." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "506.996" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "507.18100" RELATED MASS [ChEBI] +synonym: "adenosine 5'-(tetrahydrogen triphosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "Adenosine 5'-triphosphate" RELATED [KEGG_COMPOUND] +synonym: "Adenosine triphosphate" RELATED [ChemIDplus] +synonym: "ADENOSINE-5'-TRIPHOSPHATE" RELATED [PDBeChem] +synonym: "ATP" EXACT [KEGG_COMPOUND] +synonym: "C10H16N5O13P3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "H4atp" RELATED [IUPAC] +synonym: "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "ZKHQWZAMYRWXGA-KQYNXXCUSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:73010 "Beilstein" +xref: CAS:56-65-5 "KEGG COMPOUND" +xref: Drug_Central:91 "DrugCentral" +xref: DrugBank:DB00171 +xref: Gmelin:34857 "Gmelin" +xref: HMDB:HMDB00538 +xref: KEGG:C00002 +xref: KEGG:D08646 +xref: KNApSAcK:C00001491 +xref: Patent:US3079379 +xref: PDBeChem:ATP +xref: Reaxys:73010 "Reaxys" +xref: Wikipedia:Adenosine_triphosphate +is_a: CHEBI:37045 ! purine ribonucleoside 5'-triphosphate +is_a: CHEBI:37096 ! adenosine 5'-phosphate +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:57299 ! ATP(3-) + +[Term] +id: CHEBI:15428 +name: glycine +namespace: chebi_ontology +alt_id: CHEBI:10792 +alt_id: CHEBI:14344 +alt_id: CHEBI:24368 +alt_id: CHEBI:42964 +alt_id: CHEBI:5460 +def: "The simplest (and the only achiral) proteinogenic amino acid, with a hydrogen atom as its side chain." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "75.032" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "75.06664" RELATED MASS [ChEBI] +synonym: "Aminoacetic acid" RELATED [KEGG_COMPOUND] +synonym: "aminoacetic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "Aminoessigsaeure" RELATED [ChEBI] +synonym: "aminoethanoic acid" RELATED [ChEBI] +synonym: "aminoethanoic acid" RELATED [JCBN] +synonym: "C2H5NO2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "DHMQDGOQFOQNFH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "G" RELATED [ChEBI] +synonym: "Gly" RELATED [KEGG_COMPOUND] +synonym: "Glycin" RELATED [ChemIDplus] +synonym: "GLYCINE" EXACT [PDBeChem] +synonym: "Glycine" EXACT [KEGG_COMPOUND] +synonym: "glycine" EXACT IUPAC_NAME [IUPAC] +synonym: "Glycocoll" RELATED [ChemIDplus] +synonym: "Glykokoll" RELATED [ChEBI] +synonym: "Glyzin" RELATED [ChEBI] +synonym: "H2N-CH2-COOH" RELATED [IUPAC] +synonym: "Hgly" RELATED [IUPAC] +synonym: "InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)" RELATED InChI [ChEBI] +synonym: "Leimzucker" RELATED [ChemIDplus] +synonym: "NCC(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:635782 "Beilstein" +xref: CAS:56-40-6 "KEGG COMPOUND" +xref: Drug_Central:1319 "DrugCentral" +xref: DrugBank:DB00145 +xref: ECMDB:ECMDB00123 +xref: Gmelin:1808 "Gmelin" +xref: HMDB:HMDB00123 +xref: KEGG:C00037 +xref: KEGG:D00011 +xref: KNApSAcK:C00001361 +xref: MetaCyc:GLY +xref: PDBeChem:GLY +xref: PMID:10930630 "Europe PMC" +xref: PMID:11019925 "Europe PMC" +xref: PMID:11174716 "Europe PMC" +xref: PMID:11542461 "Europe PMC" +xref: PMID:11806864 "Europe PMC" +xref: PMID:12631515 "Europe PMC" +xref: PMID:12754315 "Europe PMC" +xref: PMID:12770151 "Europe PMC" +xref: PMID:12921899 "Europe PMC" +xref: PMID:15331688 "Europe PMC" +xref: PMID:15388434 "Europe PMC" +xref: PMID:15710237 "Europe PMC" +xref: PMID:16105183 "Europe PMC" +xref: PMID:16151895 "Europe PMC" +xref: PMID:16214212 "Europe PMC" +xref: PMID:16417482 "Europe PMC" +xref: PMID:16444815 "Europe PMC" +xref: PMID:16664855 "Europe PMC" +xref: PMID:16901953 "Europe PMC" +xref: PMID:16918424 "Europe PMC" +xref: PMID:16986325 "Europe PMC" +xref: PMID:16998855 "Europe PMC" +xref: PMID:17154252 "Europe PMC" +xref: PMID:17383967 "Europe PMC" +xref: PMID:17582620 "Europe PMC" +xref: PMID:17970719 "Europe PMC" +xref: PMID:18079355 "Europe PMC" +xref: PMID:18396796 "Europe PMC" +xref: PMID:18440992 "Europe PMC" +xref: PMID:18593588 "Europe PMC" +xref: PMID:18816054 "Europe PMC" +xref: PMID:18840508 "Europe PMC" +xref: PMID:19028609 "Europe PMC" +xref: PMID:19120667 "Europe PMC" +xref: PMID:19449910 "Europe PMC" +xref: PMID:19526731 "Europe PMC" +xref: PMID:19544666 "Europe PMC" +xref: PMID:19738917 "Europe PMC" +xref: PMID:19916621 "Europe PMC" +xref: PMID:19924257 "Europe PMC" +xref: PMID:21751272 "Europe PMC" +xref: PMID:22044190 "Europe PMC" +xref: PMID:22079563 "Europe PMC" +xref: PMID:22234938 "Europe PMC" +xref: PMID:22264337 "Europe PMC" +xref: PMID:22293292 "Europe PMC" +xref: PMID:22401276 "Europe PMC" +xref: PMID:22434786 "Europe PMC" +xref: Reaxys:635782 "Reaxys" +xref: Wikipedia:Glycine +xref: YMDB:YMDB00016 +is_a: CHEBI:26650 ! serine family amino acid +relationship: has_role CHEBI:25512 ! neurotransmitter +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: has_role CHEBI:62868 ! hepatoprotective agent +relationship: has_role CHEBI:64570 ! EC 2.1.2.1 (glycine hydroxymethyltransferase) inhibitor +relationship: has_role CHEBI:64571 ! NMDA receptor agonist +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:32508 ! glycinate +relationship: is_conjugate_base_of CHEBI:32507 ! glycinium +relationship: is_tautomer_of CHEBI:57305 ! glycine zwitterion +relationship: MCO:0000858 MCO:0000864 ! sucrose 15% carbon source +relationship: MCO:0000858 MCO:0000865 ! sucrose 15% nitrogen source + +[Term] +id: CHEBI:1549 +name: 3-hydroxymonocarboxylic acid +namespace: chebi_ontology +subset: 2_STAR +synonym: "0" RELATED CHARGE [KEGG_COMPOUND] +synonym: "3-Hydroxymonocarboxylic acid" EXACT [KEGG_COMPOUND] +synonym: "89.024" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "89.070" RELATED MASS [KEGG_COMPOUND] +synonym: "C3H5O3R" RELATED FORMULA [KEGG_COMPOUND] +synonym: "OC([*])CC(O)=O" RELATED SMILES [ChEBI] +xref: KEGG:C03834 +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:15537 +name: phenylacetyl-CoA +namespace: chebi_ontology +alt_id: CHEBI:14780 +alt_id: CHEBI:25980 +alt_id: CHEBI:8086 +def: "An acyl-CoA that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of phenylacetic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3'-phosphoadenosine 5'-{3-[(3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-{[3-oxo-3-({2-[(phenylacetyl)sulfanyl]ethyl}amino)propyl]amino}butyl] dihydrogen diphosphate}" EXACT IUPAC_NAME [IUPAC] +synonym: "885.157" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "885.66804" RELATED MASS [ChEBI] +synonym: "C29H42N7O17P3S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)Cc1ccccc1" RELATED SMILES [ChEBI] +synonym: "Coenzyme A, S-(benzeneacetate)" RELATED [ChemIDplus] +synonym: "InChI=1S/C29H42N7O17P3S/c1-29(2,24(40)27(41)32-9-8-19(37)31-10-11-57-20(38)12-17-6-4-3-5-7-17)14-50-56(47,48)53-55(45,46)49-13-18-23(52-54(42,43)44)22(39)28(51-18)36-16-35-21-25(30)33-15-34-26(21)36/h3-7,15-16,18,22-24,28,39-40H,8-14H2,1-2H3,(H,31,37)(H,32,41)(H,45,46)(H,47,48)(H2,30,33,34)(H2,42,43,44)/t18-,22-,23-,24+,28-/m1/s1" RELATED InChI [ChEBI] +synonym: "Phenylacetyl coenzyme A" RELATED [KEGG_COMPOUND] +synonym: "Phenylacetyl-CoA" EXACT [KEGG_COMPOUND] +synonym: "Phenylacetyl-coa" EXACT [ChemIDplus] +synonym: "Phenylacetyl-coenzyme A" RELATED [ChemIDplus] +synonym: "ZIGIFDRJFZYEEQ-CECATXLMSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7532-39-0 "ChemIDplus" +xref: HMDB:HMDB06503 +xref: KEGG:C00582 +xref: KNApSAcK:C00007536 +xref: PMID:11260461 "Europe PMC" +xref: PMID:2009287 "Europe PMC" +xref: PMID:2553650 "Europe PMC" +xref: PMID:6142928 "Europe PMC" +xref: PMID:666745 "Europe PMC" +xref: PMID:6838224 "Europe PMC" +xref: PMID:8352646 "Europe PMC" +xref: PMID:9297469 "Europe PMC" +xref: Reaxys:8399067 "Reaxys" +is_a: CHEBI:17984 ! acyl-CoA +relationship: has_functional_parent CHEBI:15351 ! acetyl-CoA +relationship: has_functional_parent CHEBI:30745 ! phenylacetic acid +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:57390 ! phenylacetyl-CoA(4-) + +[Term] +id: CHEBI:15570 +name: D-alanine +namespace: chebi_ontology +alt_id: CHEBI:10840 +alt_id: CHEBI:12899 +alt_id: CHEBI:20893 +alt_id: CHEBI:4087 +alt_id: CHEBI:41756 +alt_id: CHEBI:41798 +alt_id: CHEBI:41848 +alt_id: CHEBI:41877 +def: "The D-enantiomer of alanine." [] +subset: 3_STAR +synonym: "(2R)-2-aminopropanoic acid" RELATED [IUPAC] +synonym: "(R)-2-aminopropanoic acid" RELATED [ChEBI] +synonym: "(R)-alanine" RELATED [NIST_Chemistry_WebBook] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "89.048" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "89.09322" RELATED MASS [ChEBI] +synonym: "C3H7NO2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C[C@@H](N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "D-2-Aminopropionic acid" RELATED [KEGG_COMPOUND] +synonym: "D-Ala" RELATED [KEGG_COMPOUND] +synonym: "D-Alanin" RELATED [ChEBI] +synonym: "D-Alanine" EXACT [KEGG_COMPOUND] +synonym: "D-alanine" EXACT IUPAC_NAME [IUPAC] +synonym: "D-alpha-alanine" RELATED [NIST_Chemistry_WebBook] +synonym: "D-alpha-aminopropionic acid" RELATED [ChEBI] +synonym: "DAL" RELATED [PDBeChem] +synonym: "InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "QNAYBMKLOCPYGJ-UWTATZPHSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1720249 "Beilstein" +xref: CAS:338-69-2 "KEGG COMPOUND" +xref: DrugBank:DB01786 +xref: ECMDB:ECMDB01310 +xref: Gmelin:82157 "Gmelin" +xref: HMDB:HMDB01310 +xref: KEGG:C00133 +xref: KNApSAcK:C00019654 +xref: MetaCyc:D-ALANINE +xref: PDBeChem:DAL +xref: PMID:10977898 "Europe PMC" +xref: PMID:1450921 "Europe PMC" +xref: PMID:22005737 "Europe PMC" +xref: PMID:22075031 "Europe PMC" +xref: PMID:22123251 "Europe PMC" +xref: PMID:22313760 "Europe PMC" +xref: PMID:3275662 "Europe PMC" +xref: Reaxys:1720249 "Reaxys" +xref: YMDB:YMDB00993 +is_a: CHEBI:16449 ! alanine +is_a: CHEBI:16733 ! D-alpha-amino acid +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:77881 ! EC 4.3.1.15 (diaminopropionate ammonia-lyase) inhibitor +relationship: is_conjugate_acid_of CHEBI:32435 ! D-alaninate +relationship: is_conjugate_base_of CHEBI:32436 ! D-alaninium +relationship: is_enantiomer_of CHEBI:16977 ! L-alanine +relationship: is_tautomer_of CHEBI:57416 ! D-alanine zwitterion + +[Term] +id: CHEBI:15588 +name: (R)-malate(2-) +namespace: chebi_ontology +alt_id: CHEBI:11002 +alt_id: CHEBI:18685 +def: "An optically active form of malate having (R)-configuration." [] +subset: 3_STAR +synonym: "(2R)-2-hydroxybutanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "(R)-malate" RELATED [UniProt] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "132.006" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "132.07156" RELATED MASS [ChEBI] +synonym: "BJEPYKJPYRNKOW-UWTATZPHSA-L" RELATED InChIKey [ChEBI] +synonym: "C4H4O5" RELATED FORMULA [ChEBI] +synonym: "D-malate" RELATED [ChEBI] +synonym: "InChI=1S/C4H6O5/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/p-2/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "O[C@H](CC([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +xref: KEGG:C00497 "ChEBI" +xref: MetaCyc:CPD-660 +is_a: CHEBI:15595 ! malate(2-) +relationship: is_conjugate_base_of CHEBI:30796 ! (R)-malic acid +relationship: is_enantiomer_of CHEBI:15589 ! (S)-malate(2-) + +[Term] +id: CHEBI:15589 +name: (S)-malate(2-) +namespace: chebi_ontology +alt_id: CHEBI:11066 +alt_id: CHEBI:13140 +alt_id: CHEBI:18784 +def: "An optically active form of malate having (S)-configuration." [] +subset: 3_STAR +synonym: "(2S)-2-hydroxybutanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "(S)-malate" RELATED [UniProt] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "132.006" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "132.07156" RELATED MASS [ChEBI] +synonym: "BJEPYKJPYRNKOW-REOHCLBHSA-L" RELATED InChIKey [ChEBI] +synonym: "C4H4O5" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H6O5/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/p-2/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-malate" RELATED [ChEBI] +synonym: "O[C@@H](CC([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:4133558 "Beilstein" +xref: KEGG:C00149 "ChEBI" +xref: MetaCyc:MAL +xref: Reaxys:4133558 "Reaxys" +is_a: CHEBI:15595 ! malate(2-) +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:30797 ! (S)-malic acid +relationship: is_enantiomer_of CHEBI:15588 ! (R)-malate(2-) + +[Term] +id: CHEBI:15595 +name: malate(2-) +namespace: chebi_ontology +alt_id: CHEBI:14556 +alt_id: CHEBI:25114 +def: "A C4-dicarboxylate resulting from deprotonation of both carboxy groups of malic acid." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "132.006" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "132.07156" RELATED MASS [ChEBI] +synonym: "2-hydroxybutanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "BJEPYKJPYRNKOW-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "C4H4O5" RELATED FORMULA [ChEBI] +synonym: "hydroxybutanedioic acid, ion(2-)" RELATED [ChemIDplus] +synonym: "InChI=1S/C4H6O5/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/p-2" RELATED InChI [ChEBI] +synonym: "mal" RELATED [IUPAC] +synonym: "malate anion" RELATED [ChEBI] +synonym: "malate dianion" RELATED [ChEBI] +synonym: "OC(CC([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:3664410 "Beilstein" +xref: CAS:149-61-1 "ChemIDplus" +xref: Gmelin:327305 "Gmelin" +xref: KEGG:C00711 "ChEBI" +xref: PMID:17190852 "Europe PMC" +xref: Reaxys:3664410 "Reaxys" +is_a: CHEBI:25115 ! malate +is_a: CHEBI:61336 ! C4-dicarboxylate +relationship: has_functional_parent CHEBI:30031 ! succinate(2-) +relationship: has_role CHEBI:78675 ! fundamental metabolite + +[Term] +id: CHEBI:15671 +name: L-tartaric acid +namespace: chebi_ontology +alt_id: CHEBI:18710 +alt_id: CHEBI:358 +alt_id: CHEBI:45866 +subset: 3_STAR +synonym: "(+)-(R,R)-tartaric acid" RELATED [ChemIDplus] +synonym: "(+)-L-tartaric acid" RELATED [ChemIDplus] +synonym: "(+)-Tartaric acid" RELATED [KEGG_COMPOUND] +synonym: "(+)-tartaric acid" RELATED [IUPAC] +synonym: "(+)-Weinsaeure" RELATED [ChEBI] +synonym: "(2R,3R)-2,3-Dihydroxybernsteinsaeure" RELATED [ChemIDplus] +synonym: "(2R,3R)-2,3-dihydroxybutanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "(2R,3R)-2,3-dihydroxysuccinic acid" RELATED [ChEBI] +synonym: "(2R,3R)-Tartaric acid" RELATED [KEGG_COMPOUND] +synonym: "(2R,3R)-tartaric acid" RELATED [IUPAC] +synonym: "(R,R)-(+)-tartaric acid" RELATED [NIST_Chemistry_WebBook] +synonym: "(R,R)-Tartaric acid" RELATED [KEGG_COMPOUND] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.016" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "150.08684" RELATED MASS [ChEBI] +synonym: "C4H6O6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "FEWJPZIEWOKRBE-JCYAYHJZSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/t1-,2-/m1/s1" RELATED InChI [ChEBI] +synonym: "L(+)-TARTARIC ACID" RELATED [PDBeChem] +synonym: "L-Tartaric acid" EXACT [KEGG_COMPOUND] +synonym: "L-threaric acid" RELATED [IUPAC] +synonym: "O[C@H]([C@@H](O)C(O)=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "Rechtsweinsaeure" RELATED [ChEBI] +synonym: "Weinsteinsaeure" RELATED [ChemIDplus] +xref: Beilstein:1725147 "Beilstein" +xref: Beilstein:4231301 "Beilstein" +xref: CAS:526-83-0 "ChemIDplus" +xref: CAS:87-69-4 "KEGG COMPOUND" +xref: Drug_Central:2566 "DrugCentral" +xref: Gmelin:82690 "Gmelin" +xref: KEGG:C00898 +xref: PDBeChem:TLA +is_a: CHEBI:26849 ! tartaric acid +relationship: is_conjugate_acid_of CHEBI:35398 ! L-tartrate(1-) +relationship: is_enantiomer_of CHEBI:15672 ! D-tartaric acid + +[Term] +id: CHEBI:15672 +name: D-tartaric acid +namespace: chebi_ontology +alt_id: CHEBI:18806 +alt_id: CHEBI:446 +alt_id: CHEBI:45873 +def: "The D-enantiomer of tartaric acid." [] +subset: 3_STAR +synonym: "(-)-(S,S)-tartaric acid" RELATED [ChemIDplus] +synonym: "(-)-D-tartaric acid" RELATED [ChemIDplus] +synonym: "(-)-Tartaric acid" RELATED [KEGG_COMPOUND] +synonym: "(-)-tartaric acid" RELATED [IUPAC] +synonym: "(-)-Weinsaeure" RELATED [ChEBI] +synonym: "(2S,3S)-(-)-tartaric acid" RELATED [ChemIDplus] +synonym: "(2S,3S)-2,3-dihydroxybutanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "(2S,3S)-Tartaric acid" RELATED [KEGG_COMPOUND] +synonym: "(2S,3S)-tartaric acid" RELATED [IUPAC] +synonym: "(S,S)-(-)-tartaric acid" RELATED [ChemIDplus] +synonym: "(S,S)-Tartaric acid" RELATED [KEGG_COMPOUND] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.016" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "150.08684" RELATED MASS [ChEBI] +synonym: "C4H6O6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D(-)-TARTARIC ACID" RELATED [PDBeChem] +synonym: "D-(-)-tartaric acid" RELATED [ChemIDplus] +synonym: "D-Tartaric acid" EXACT [KEGG_COMPOUND] +synonym: "D-threaric acid" RELATED [IUPAC] +synonym: "FEWJPZIEWOKRBE-LWMBPPNESA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/t1-,2-/m0/s1" RELATED InChI [ChEBI] +synonym: "Linksweinsaeure" RELATED [ChEBI] +synonym: "O[C@@H]([C@H](O)C(O)=O)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:1725145 "Beilstein" +xref: Beilstein:4666810 "Beilstein" +xref: CAS:147-71-7 "ChemIDplus" +xref: DrugBank:DB01694 +xref: Gmelin:50225 "Gmelin" +xref: HMDB:HMDB29878 +xref: KEGG:C02107 +xref: MetaCyc:D-TARTRATE +xref: PDBeChem:TAR +xref: Reaxys:1725145 "Reaxys" +is_a: CHEBI:26849 ! tartaric acid +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:35399 ! D-tartrate(1-) +relationship: is_enantiomer_of CHEBI:15671 ! L-tartaric acid + +[Term] +id: CHEBI:15673 +name: meso-tartaric acid +namespace: chebi_ontology +alt_id: CHEBI:10599 +alt_id: CHEBI:25206 +alt_id: CHEBI:45680 +def: "A 2,3-dihydroxybutanedioic acid that has meso configuration." [] +subset: 3_STAR +synonym: "(2R,3S)-2,3-dihydroxybutanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "(2R,3S)-2,3-dihydroxysuccinic acid" RELATED [ChEBI] +synonym: "(2R,3S)-rel-2,3-dihydroxybutanedioic acid" RELATED [ChemIDplus] +synonym: "(2R,3S)-tartaric acid" RELATED [IUPAC] +synonym: "(R*,S*)-2,3-dihydroxybutanedioic acid" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.016" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "150.08684" RELATED MASS [ChEBI] +synonym: "C4H6O6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "erythraric acid" RELATED [IUPAC] +synonym: "FEWJPZIEWOKRBE-XIXRPRMCSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/t1-,2+" RELATED InChI [ChEBI] +synonym: "internally compensated tartaric acid" RELATED [NIST_Chemistry_WebBook] +synonym: "m-tartaric acid" RELATED [ChEBI] +synonym: "meso-Tartaric acid" EXACT [KEGG_COMPOUND] +synonym: "meso-tartaric acid" EXACT [IUPAC] +synonym: "meso-tartaric acid" EXACT [UniProt] +synonym: "mesotartaric acid" RELATED [ChemIDplus] +synonym: "Mesoweinsaeure" RELATED [ChEBI] +synonym: "O[C@@H]([C@@H](O)C(O)=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "S,R MESO-TARTARIC ACID" RELATED [PDBeChem] +synonym: "unresolvable tartaric acid" RELATED [NIST_Chemistry_WebBook] +xref: Beilstein:1725146 "Beilstein" +xref: Beilstein:4666811 "Beilstein" +xref: CAS:147-73-9 "KEGG COMPOUND" +xref: Gmelin:3214 "Gmelin" +xref: KEGG:C00552 +xref: PDBeChem:SRT +is_a: CHEBI:15674 ! 2,3-dihydroxybutanedioic acid +relationship: is_conjugate_acid_of CHEBI:35400 ! meso-tartrate(1-) + +[Term] +id: CHEBI:15674 +name: 2,3-dihydroxybutanedioic acid +namespace: chebi_ontology +alt_id: CHEBI:9404 +def: "A tetraric acid that is butanedioic acid substituted by hydroxy groups at positions 2 and 3." [] +subset: 3_STAR +synonym: "(+)-Tartaric acid" RELATED [KEGG_COMPOUND] +synonym: "(2R,3R)-Tartaric acid" RELATED [KEGG_COMPOUND] +synonym: "(R,R)-Tartrate" RELATED [KEGG_COMPOUND] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.016" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "150.08684" RELATED MASS [ChEBI] +synonym: "2,3-dihydroxybutanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "2,3-dihydroxysuccinic acid" RELATED [ChEBI] +synonym: "C4H6O6" RELATED FORMULA [ChEBI] +synonym: "FEWJPZIEWOKRBE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)" RELATED InChI [ChEBI] +synonym: "L-Tartaric acid" RELATED [KEGG_COMPOUND] +synonym: "OC(C(O)C(O)=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "Tartaric acid" RELATED [KEGG_COMPOUND] +xref: CAS:87-69-4 "KEGG COMPOUND" +xref: Gmelin:27021 "Gmelin" +xref: KEGG:C00898 +xref: KEGG:D00103 +xref: KNApSAcK:C00001206 +xref: Reaxys:510169 "Reaxys" +xref: Wikipedia:Tartaric_Acid +is_a: CHEBI:26933 ! tetraric acid +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76967 ! human xenobiotic metabolite +relationship: is_conjugate_acid_of CHEBI:48929 ! 3-carboxy-2,3-dihydroxypropanoate + +[Term] +id: CHEBI:15676 +name: allantoin +namespace: chebi_ontology +alt_id: CHEBI:13761 +alt_id: CHEBI:22354 +alt_id: CHEBI:2594 +def: "An imidazolidine-2,4-dione that is 5-aminohydantoin in which a carbamoyl group is attached to the exocyclic nitrogen." [] +subset: 3_STAR +synonym: "(2,5-Dioxo-4-imidazolidinyl)urea" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "158.044" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "158.11560" RELATED MASS [ChEBI] +synonym: "2,5-Dioxo-4-imidazolidinyl-urea" RELATED [NIST_Chemistry_WebBook] +synonym: "4-ureido-2,5-imidazolidinedione" RELATED [HMDB] +synonym: "5-Ureido-2,4-imidazolidindione" RELATED [ChemIDplus] +synonym: "5-Ureidohydantoin" RELATED [KEGG_COMPOUND] +synonym: "Allantoin" EXACT [KEGG_COMPOUND] +synonym: "allantoin" EXACT [UniProt] +synonym: "C4H6N4O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Glyoxyldiureide" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C4H6N4O3/c5-3(10)6-1-2(9)8-4(11)7-1/h1H,(H3,5,6,10)(H2,7,8,9,11)" RELATED InChI [ChEBI] +synonym: "N-(2,5-Dioxo-4-imidazolidinyl)urea" RELATED [HMDB] +synonym: "N-(2,5-dioxoimidazolidin-4-yl)urea" EXACT IUPAC_NAME [IUPAC] +synonym: "NC(=O)NC1NC(=O)NC1=O" RELATED SMILES [ChEBI] +synonym: "POJWUDADGALRAB-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:97-59-6 "KEGG COMPOUND" +xref: Drug_Central:4268 "DrugCentral" +xref: HMDB:HMDB00462 +xref: KEGG:C01551 +xref: KEGG:D00121 +xref: KNApSAcK:C00007468 +xref: LINCS:LSM-5190 +xref: MetaCyc:ALLANTOIN +xref: Patent:US2158098 +xref: PMID:11157020 "Europe PMC" +xref: PMID:14619112 "Europe PMC" +xref: PMID:17190852 "Europe PMC" +xref: Reaxys:83514 "Reaxys" +xref: Wikipedia:Allantoin +is_a: CHEBI:24628 ! imidazolidine-2,4-dione +is_a: CHEBI:47857 ! ureas +relationship: has_functional_parent CHEBI:27612 ! hydantoin +relationship: has_role CHEBI:73336 ! vulnerary +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_tautomer_of CHEBI:74345 ! 1-(5-hydroxy-2-oxo-2,3-dihydroimidazol-4-yl)urea + +[Term] +id: CHEBI:15693 +name: aldose +namespace: chebi_ontology +alt_id: CHEBI:13755 +alt_id: CHEBI:22305 +alt_id: CHEBI:2561 +def: "Aldehydic parent sugars (polyhydroxy aldehydes H[CH(OH)]nC(=O)H, n >= 2) and their intramolecular hemiacetals." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "90.07790" RELATED MASS [ChEBI] +synonym: "Aldose" EXACT [KEGG_COMPOUND] +synonym: "aldoses" RELATED [ChEBI] +synonym: "an aldose" RELATED [UniProt] +synonym: "C2H4O2(CH2O)n" RELATED FORMULA [ChEBI] +xref: KEGG:C01370 +xref: Wikipedia:Aldose +is_a: CHEBI:35381 ! monosaccharide + +[Term] +id: CHEBI:15705 +name: L-alpha-amino acid +namespace: chebi_ontology +alt_id: CHEBI:13072 +alt_id: CHEBI:13243 +alt_id: CHEBI:13797 +alt_id: CHEBI:21224 +alt_id: CHEBI:6175 +def: "Any alpha-amino acid having L-configuration at the alpha-carbon." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "74.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "74.05870" RELATED MASS [ChEBI] +synonym: "C2H4NO2R" RELATED FORMULA [ChEBI] +synonym: "L-2-Amino acid" RELATED [KEGG_COMPOUND] +synonym: "L-alpha-amino acid" EXACT [IUPAC] +synonym: "L-alpha-amino acids" EXACT IUPAC_NAME [IUPAC] +synonym: "L-alpha-amino acids" RELATED [ChEBI] +synonym: "L-Amino acid" RELATED [KEGG_COMPOUND] +synonym: "N[C@@H]([*])C(O)=O" RELATED SMILES [ChEBI] +xref: KEGG:C00151 +is_a: CHEBI:33704 ! alpha-amino acid +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: is_conjugate_acid_of CHEBI:59814 ! L-alpha-amino acid anion +relationship: is_tautomer_of CHEBI:59869 ! L-alpha-amino acid zwitterion + +[Term] +id: CHEBI:15713 +name: UTP +namespace: chebi_ontology +alt_id: CHEBI:13510 +alt_id: CHEBI:27233 +alt_id: CHEBI:9850 +def: "A pyrimidine ribonucleoside 5'-triphosphate having uracil as the nucleobase." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "483.969" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "484.14116" RELATED MASS [ChEBI] +synonym: "5'-UTP" RELATED [ChemIDplus] +synonym: "C9H15N2O15P3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "H4utp" RELATED [ChEBI] +synonym: "InChI=1S/C9H15N2O15P3/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" RELATED InChI [ChEBI] +synonym: "O[C@@H]1[C@@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)O[C@H]([C@@H]1O)n1ccc(=O)[nH]c1=O" RELATED SMILES [ChEBI] +synonym: "PGAVKCOVUIYSFO-XVFCMESISA-N" RELATED InChIKey [ChEBI] +synonym: "uridine 5'-(tetrahydrogen triphosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "Uridine 5'-triphosphate" RELATED [KEGG_COMPOUND] +synonym: "uridine 5'-triphosphoric acid" RELATED [ChemIDplus] +synonym: "Uridine triphosphate" RELATED [KEGG_COMPOUND] +synonym: "UTP" EXACT [KEGG_COMPOUND] +xref: Beilstein:71520 "Beilstein" +xref: CAS:63-39-8 "KEGG COMPOUND" +xref: Drug_Central:3639 "DrugCentral" +xref: DrugBank:DB04005 +xref: Gmelin:307896 "Gmelin" +xref: KEGG:C00075 +xref: PDBeChem:UTP +is_a: CHEBI:27232 ! uridine 5'-phosphate +is_a: CHEBI:37044 ! pyrimidine ribonucleoside 5'-triphosphate +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:46398 ! UTP(4-) +relationship: is_conjugate_acid_of CHEBI:57481 ! UTP(3-) + +[Term] +id: CHEBI:15724 +name: trimethylamine N-oxide +namespace: chebi_ontology +alt_id: CHEBI:15262 +alt_id: CHEBI:15263 +alt_id: CHEBI:27126 +alt_id: CHEBI:9733 +def: "A tertiary amine oxide resulting from the oxidation of the amino group of trimethylamine." [] +subset: 3_STAR +synonym: "(CH3)3NO" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "75.068" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "75.110" RELATED MASS [ChEBI] +synonym: "C3H9NO" RELATED FORMULA [ChEBI] +synonym: "C[N+](C)([O-])C" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H9NO/c1-4(2,3)5/h1-3H3" RELATED InChI [ChEBI] +synonym: "Me3N(+)O(-)" RELATED [ChEBI] +synonym: "Me3N(O)" RELATED [ChEBI] +synonym: "N(CH3)3O" RELATED [ChEBI] +synonym: "N,N-dimethylmethanamine oxide" EXACT IUPAC_NAME [IUPAC] +synonym: "TMAO" RELATED [NIST_Chemistry_WebBook] +synonym: "Trimethylamine N-oxide" EXACT [KEGG_COMPOUND] +synonym: "trimethylamine N-oxide" EXACT [UniProt] +synonym: "trimethylamine oxide" RELATED [NIST_Chemistry_WebBook] +synonym: "Trimethylaminoxid" RELATED [ChEBI] +synonym: "trimethyloxamine" RELATED [ChemIDplus] +synonym: "UYPYRKYUKCHHIB-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1734787 "Beilstein" +xref: CAS:1184-78-7 "ChemIDplus" +xref: Gmelin:1839 "Gmelin" +xref: HMDB:HMDB00925 +xref: KEGG:C01104 +xref: MetaCyc:TRIMENTHLAMINE-N-O +xref: PDBeChem:TMO +xref: PMID:12683801 "Europe PMC" +xref: PMID:1453985 "Europe PMC" +xref: PMID:17697669 "Europe PMC" +xref: PMID:19425246 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:3170512 "Europe PMC" +xref: PMID:3674879 "Europe PMC" +xref: Reaxys:1734787 "Reaxys" +xref: Wikipedia:Trimethylamine_oxide +is_a: CHEBI:134363 ! tertiary amine oxide +relationship: has_functional_parent CHEBI:18139 ! trimethylamine +relationship: has_role CHEBI:25728 ! osmolyte +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite + +[Term] +id: CHEBI:15734 +name: primary alcohol +namespace: chebi_ontology +alt_id: CHEBI:13676 +alt_id: CHEBI:14887 +alt_id: CHEBI:26262 +alt_id: CHEBI:57489 +alt_id: CHEBI:8406 +def: "A primary alcohol is a compound in which a hydroxy group, -OH, is attached to a saturated carbon atom which has either three hydrogen atoms attached to it or only one other carbon atom and two hydrogen atoms attached to it." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-Alcohol" RELATED [KEGG_COMPOUND] +synonym: "31.018" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "31.03390" RELATED MASS [ChEBI] +synonym: "[H]C([H])(O)[*]" RELATED SMILES [ChEBI] +synonym: "a primary alcohol" RELATED [UniProt] +synonym: "CH3OR" RELATED FORMULA [ChEBI] +synonym: "Primary alcohol" EXACT [KEGG_COMPOUND] +synonym: "primary alcohols" RELATED [ChEBI] +xref: KEGG:C00226 +is_a: CHEBI:30879 ! alcohol + +[Term] +id: CHEBI:15740 +name: formate +namespace: chebi_ontology +alt_id: CHEBI:14276 +alt_id: CHEBI:24081 +def: "A monocarboxylic acid anion that is the conjugate base of formic acid. Induces severe metabolic acidosis and ocular injury in human subjects." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "44.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "45.01744" RELATED MASS [ChEBI] +synonym: "[H]C([O-])=O" RELATED SMILES [ChEBI] +synonym: "aminate" RELATED [ChEBI] +synonym: "BDAGIHXWWSANSR-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "CHO2" RELATED FORMULA [ChEBI] +synonym: "formate" EXACT IUPAC_NAME [IUPAC] +synonym: "formate" EXACT [UniProt] +synonym: "formiate" RELATED [ChEBI] +synonym: "formic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "formylate" RELATED [ChEBI] +synonym: "HCO2 anion" RELATED [NIST_Chemistry_WebBook] +synonym: "hydrogen carboxylate" RELATED [ChEBI] +synonym: "InChI=1S/CH2O2/c2-1-3/h1H,(H,2,3)/p-1" RELATED InChI [ChEBI] +synonym: "methanoate" RELATED [ChEBI] +xref: Beilstein:1901205 "Beilstein" +xref: CAS:71-47-6 "NIST Chemistry WebBook" +xref: colombos:FORMATE +xref: Gmelin:1006 "Gmelin" +xref: HMDB:HMDB00142 +xref: KEGG:C00058 +xref: MetaCyc:FORMATE +xref: PMID:17190852 "Europe PMC" +xref: PMID:3946945 "Europe PMC" +xref: Reaxys:1901205 "Reaxys" +xref: UM-BBD_compID:c0106 "ChEBI" +xref: Wikipedia:Formate +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:30751 ! formic acid + +[Term] +id: CHEBI:15741 +name: succinic acid +namespace: chebi_ontology +alt_id: CHEBI:22943 +alt_id: CHEBI:26807 +alt_id: CHEBI:45639 +alt_id: CHEBI:9304 +def: "An alpha,omega-dicarboxylic acid resulting from the formal oxidation of each of the terminal methyl groups of butane to the corresponding carboxy group. It is an intermediate metabolite in the citric acid cycle." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,2-ethanedicarboxylic acid" RELATED [ChemIDplus] +synonym: "118.027" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "118.08800" RELATED MASS [ChEBI] +synonym: "acide butanedioique" RELATED [ChEBI] +synonym: "acide succinique" RELATED [ChEBI] +synonym: "acidum succinicum" RELATED [ChemIDplus] +synonym: "amber acid" RELATED [NIST_Chemistry_WebBook] +synonym: "asuccin" RELATED [NIST_Chemistry_WebBook] +synonym: "Bernsteinsaeure" RELATED [ChEBI] +synonym: "Butandisaeure" RELATED [ChemIDplus] +synonym: "butanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "Butanedionic acid" RELATED [KEGG_COMPOUND] +synonym: "C4H6O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Dihydrofumaric acid" RELATED [HMDB] +synonym: "E363" RELATED [ChEBI] +synonym: "Ethylenesuccinic acid" RELATED [KEGG_COMPOUND] +synonym: "HOOC-CH2-CH2-COOH" RELATED [IUPAC] +synonym: "InChI=1S/C4H6O4/c5-3(6)1-2-4(7)8/h1-2H2,(H,5,6)(H,7,8)" RELATED InChI [ChEBI] +synonym: "KDYFGRWQOYBRFD-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "OC(=O)CCC(O)=O" RELATED SMILES [ChEBI] +synonym: "spirit of amber" RELATED [ChEBI] +synonym: "SUCCINIC ACID" EXACT [PDBeChem] +synonym: "Succinic acid" EXACT [KEGG_COMPOUND] +synonym: "succinic acid" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:1754069 "Beilstein" +xref: CAS:110-15-6 "KEGG COMPOUND" +xref: Drug_Central:2487 "DrugCentral" +xref: DrugBank:DB00139 +xref: ECMDB:ECMDB00254 +xref: Gmelin:2785 "Gmelin" +xref: HMDB:HMDB00254 +xref: KEGG:C00042 +xref: KNApSAcK:C00001205 +xref: LIPID_MAPS_instance:LMFA01170043 "LIPID MAPS" +xref: MetaCyc:SUC +xref: PDBeChem:SIN +xref: PMID:17439666 "Europe PMC" +xref: Reaxys:1754069 "Reaxys" +xref: Wikipedia:Succinic_acid +xref: YMDB:YMDB00338 +is_a: CHEBI:28383 ! alpha,omega-dicarboxylic acid +is_a: CHEBI:66873 ! C4-dicarboxylic acid +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:49201 ! anti-ulcer drug +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: has_role CHEBI:66987 ! radiation protective agent +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:30779 ! succinate(1-) + +[Term] +id: CHEBI:15760 +name: tyramine +namespace: chebi_ontology +alt_id: CHEBI:15276 +alt_id: CHEBI:27174 +alt_id: CHEBI:9799 +def: "A primary amino compound obtained by formal decarboxylation of the amino acid tyrosine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "137.084" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "137.17900" RELATED MASS [ChEBI] +synonym: "2-(p-Hydroxyphenyl)ethylamine" RELATED [KEGG_COMPOUND] +synonym: "4-(2-aminoethyl)phenol" EXACT IUPAC_NAME [IUPAC] +synonym: "4-Hydroxy-beta-phenylethylamine" RELATED [HMDB] +synonym: "4-hydroxyphenethylamine" RELATED [ChEBI] +synonym: "4-Hydroxyphenylethylamine" RELATED [HMDB] +synonym: "beta-(4-Hydroxyphenyl)ethylamine" RELATED [HMDB] +synonym: "C8H11NO" RELATED FORMULA [KEGG_COMPOUND] +synonym: "DZGWFCGJZKJUFP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C8H11NO/c9-6-5-7-1-3-8(10)4-2-7/h1-4,10H,5-6,9H2" RELATED InChI [ChEBI] +synonym: "NCCc1ccc(O)cc1" RELATED SMILES [ChEBI] +synonym: "p-(2-Aminoethyl)phenol" RELATED [HMDB] +synonym: "p-(2-aminoethyl)phenol" RELATED [ChEBI] +synonym: "p-hydroxyphenethylamine" RELATED [HMDB] +synonym: "p-hydroxyphenylethylamine" RELATED [HMDB] +synonym: "p-tyramine" RELATED [HMDB] +synonym: "Tyramin" RELATED [ChemIDplus] +synonym: "Tyramine" EXACT [KEGG_COMPOUND] +xref: Beilstein:1099914 "ChemIDplus" +xref: CAS:51-67-2 "ChemIDplus" +xref: Drug_Central:2784 "DrugCentral" +xref: Gmelin:82946 "Gmelin" +xref: HMDB:HMDB00306 +xref: KEGG:C00483 +xref: KNApSAcK:C00001435 +xref: LINCS:LSM-19016 +xref: MetaCyc:TYRAMINE +xref: PDBeChem:AEF +xref: PMID:11919655 "Europe PMC" +xref: PMID:12183041 "Europe PMC" +xref: PMID:12811595 "Europe PMC" +xref: PMID:15000446 "Europe PMC" +xref: PMID:15848803 "Europe PMC" +xref: PMID:18422653 "Europe PMC" +xref: PMID:18970430 "Europe PMC" +xref: PMID:19137318 "Europe PMC" +xref: PMID:19189084 "Europe PMC" +xref: PMID:21570963 "Europe PMC" +xref: PMID:21628600 "Europe PMC" +xref: PMID:21651557 "Europe PMC" +xref: PMID:21679153 "Europe PMC" +xref: PMID:21850574 "Europe PMC" +xref: PMID:21909937 "Europe PMC" +xref: PMID:22735334 "Europe PMC" +xref: PMID:3137238 "Europe PMC" +xref: Reaxys:1099914 "Reaxys" +xref: Wikipedia:Tyramine +is_a: CHEBI:25375 ! monoamine molecular messenger +is_a: CHEBI:27175 ! tyramines +is_a: CHEBI:50994 ! primary amino compound +relationship: has_role CHEBI:25512 ! neurotransmitter +relationship: has_role CHEBI:37733 ! EC 3.1.1.8 (cholinesterase) inhibitor +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:327995 ! tyraminium + +[Term] +id: CHEBI:15778 +name: N-acyl-D-amino acid +namespace: chebi_ontology +alt_id: CHEBI:12474 +alt_id: CHEBI:21631 +alt_id: CHEBI:7224 +def: "Any N-acyl-amino acid in which the amino acid moiety has D configuration." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "101.011" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "101.06080" RELATED MASS [ChEBI] +synonym: "C3H3NO3R2" RELATED FORMULA [ChEBI] +synonym: "OC(=O)[C@@H]([*])NC([*])=O" RELATED SMILES [ChEBI] +is_a: CHEBI:51569 ! N-acyl-amino acid +is_a: CHEBI:83812 ! non-proteinogenic amino acid derivative +relationship: is_conjugate_acid_of CHEBI:59876 ! N-acyl-D-alpha-amino acid anion +relationship: is_enantiomer_of CHEBI:21644 ! N-acyl-L-amino acid + +[Term] +id: CHEBI:15784 +name: N-acetyl-D-glucosamine 6-phosphate +namespace: chebi_ontology +alt_id: CHEBI:12456 +alt_id: CHEBI:12564 +alt_id: CHEBI:21521 +alt_id: CHEBI:7127 +def: "An N-acyl-D-glucosamine 6-phosphate that is the N-acetyl derivative of D-glucosamine 6-phosphate. It is a component of the aminosugar metabolism." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-acetamido-2-deoxy-6-O-phosphono-D-glucopyranose" RELATED [ChEBI] +synonym: "2-acetamido-2-deoxy-D-glucopyranose 6-(dihydrogen phosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "301.056" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "301.18774" RELATED MASS [ChEBI] +synonym: "BRGMHAYQAZFZDJ-RTRLPJTCSA-N" RELATED InChIKey [ChEBI] +synonym: "C8H16NO9P" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(=O)N[C@H]1C(O)O[C@H](COP(O)(O)=O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C8H16NO9P/c1-3(10)9-5-7(12)6(11)4(18-8(5)13)2-17-19(14,15)16/h4-8,11-13H,2H2,1H3,(H,9,10)(H2,14,15,16)/t4-,5-,6-,7-,8?/m1/s1" RELATED InChI [ChEBI] +synonym: "N-Acetyl-D-glucosamine 6-phosphate" EXACT [KEGG_COMPOUND] +synonym: "N-acetyl-D-glucosamine 6-phosphate" EXACT [ChEBI] +xref: DrugBank:DB03951 +xref: HMDB:HMDB01062 +xref: KEGG:C00357 +xref: KNApSAcK:C00019661 +xref: PMID:17077487 "Europe PMC" +xref: PMID:8125098 "Europe PMC" +xref: PMID:8747459 "Europe PMC" +xref: Reaxys:2337906 "Reaxys" +is_a: CHEBI:15993 ! N-acyl-D-glucosamine 6-phosphate +relationship: has_functional_parent CHEBI:17315 ! D-glucosamine +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:57513 ! N-acetyl-D-glucosamine 6-phosphate(2-) + +[Term] +id: CHEBI:15816 +name: D-arginine +namespace: chebi_ontology +alt_id: CHEBI:12917 +alt_id: CHEBI:20917 +alt_id: CHEBI:4106 +alt_id: CHEBI:41855 +def: "A D-alpha-amino acid that is the D-isomer of arginine." [] +subset: 3_STAR +synonym: "(2R)-2-amino-5-(carbamimidamido)pentanoic acid" RELATED [IUPAC] +synonym: "(2R)-2-amino-5-guanidinopentanoic acid" RELATED [JCBN] +synonym: "(R)-2-amino-5-guanidinopentanoic acid" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "174.112" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "174.20100" RELATED MASS [ChEBI] +synonym: "C6H14N4O2" RELATED FORMULA [ChEBI] +synonym: "D-2-Amino-5-guanidinovaleric acid" RELATED [KEGG_COMPOUND] +synonym: "D-Arginin" RELATED [ChEBI] +synonym: "D-Arginine" EXACT [KEGG_COMPOUND] +synonym: "D-arginine" EXACT IUPAC_NAME [IUPAC] +synonym: "DAR" RELATED [PDBeChem] +synonym: "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/t4-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H](CCCNC(N)=N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "ODKSFYDXXFIFQN-SCSAIBSYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1725412 "Beilstein" +xref: CAS:157-06-2 "KEGG COMPOUND" +xref: DrugBank:DB04027 +xref: Gmelin:364938 "Gmelin" +xref: HMDB:HMDB03416 +xref: KEGG:C00792 +xref: MetaCyc:CPD-220 +xref: PDBeChem:DAR +xref: PMID:15540275 "Europe PMC" +xref: PMID:15723827 "Europe PMC" +xref: PMID:16912865 "Europe PMC" +xref: PMID:19651461 "Europe PMC" +xref: PMID:22518022 "Europe PMC" +xref: Reaxys:1725412 "Reaxys" +is_a: CHEBI:16733 ! D-alpha-amino acid +is_a: CHEBI:29016 ! arginine +relationship: has_role CHEBI:65053 ! EC 4.1.1.19 (arginine decarboxylase) inhibitor +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: is_conjugate_acid_of CHEBI:32688 ! D-argininate +relationship: is_conjugate_base_of CHEBI:32689 ! D-argininium(1+) +relationship: is_enantiomer_of CHEBI:16467 ! L-arginine + +[Term] +id: CHEBI:15824 +name: D-fructose +namespace: chebi_ontology +alt_id: CHEBI:12923 +alt_id: CHEBI:20929 +alt_id: CHEBI:4118 +def: "Fructose is a levorotatory monosaccharide and an isomer of glucose. Although fructose is a hexose (6 carbon sugar), it generally exists as a 5-member hemiketal ring (a furanose)." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "180.15588" RELATED MASS [ChEBI] +synonym: "C6H12O6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-arabino-hex-2-ulose" EXACT IUPAC_NAME [IUPAC] +synonym: "D-arabino-Hexulose" RELATED [KEGG_COMPOUND] +synonym: "D-Fru" RELATED [JCBN] +synonym: "D-fructose" EXACT IUPAC_NAME [IUPAC] +synonym: "D-laevulose" RELATED [ChEBI] +synonym: "Fruit sugar" RELATED [KEGG_COMPOUND] +synonym: "Laevulose" RELATED [ChEBI] +synonym: "Levulose" RELATED [KEGG_COMPOUND] +xref: CAS:57-48-7 "KEGG COMPOUND" +xref: HMDB:HMDB00660 +xref: KEGG:C00095 +xref: MetaCyc:FRU +xref: PDBeChem:FRU +xref: PMID:22735334 "Europe PMC" +is_a: CHEBI:28757 ! fructose +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite + +[Term] +id: CHEBI:15858 +name: bromide +namespace: chebi_ontology +alt_id: CHEBI:13918 +alt_id: CHEBI:3178 +alt_id: CHEBI:49515 +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "78.918" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "79.90400" RELATED MASS [ChEBI] +synonym: "[Br-]" RELATED SMILES [ChEBI] +synonym: "Br" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Br(-)" RELATED [IUPAC] +synonym: "Br-" RELATED [KEGG_COMPOUND] +synonym: "Bromide" EXACT [KEGG_COMPOUND] +synonym: "bromide" EXACT [UniProt] +synonym: "bromide" EXACT IUPAC_NAME [IUPAC] +synonym: "BROMIDE ION" RELATED [PDBeChem] +synonym: "bromide(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "bromine anion" RELATED [NIST_Chemistry_WebBook] +synonym: "CPELXLSAUQHCOX-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/BrH/h1H/p-1" RELATED InChI [ChEBI] +xref: Beilstein:3587179 "Beilstein" +xref: CAS:24959-67-9 "KEGG COMPOUND" +xref: Gmelin:14908 "Gmelin" +xref: KEGG:C00720 +xref: KEGG:C01324 +xref: PDBeChem:BR +is_a: CHEBI:16042 ! halide anion +is_a: CHEBI:36896 ! monoatomic bromine +relationship: is_conjugate_base_of CHEBI:47266 ! hydrogen bromide + +[Term] +id: CHEBI:15904 +name: long-chain fatty acid +namespace: chebi_ontology +alt_id: CHEBI:13655 +alt_id: CHEBI:14529 +alt_id: CHEBI:25075 +alt_id: CHEBI:6528 +def: "A fatty acid with a chain length ranging from C13 to C22." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "44.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "CHO2R" RELATED FORMULA [ChEBI] +synonym: "Higher fatty acid" RELATED [KEGG_COMPOUND] +synonym: "LCFA" RELATED [ChEBI] +synonym: "LCFAs" RELATED [ChEBI] +synonym: "Long-chain fatty acid" EXACT [KEGG_COMPOUND] +synonym: "long-chain fatty acids" RELATED [ChEBI] +synonym: "OC([*])=O" RELATED SMILES [ChEBI] +xref: KEGG:C00638 +is_a: CHEBI:35366 ! fatty acid +relationship: is_conjugate_acid_of CHEBI:57560 ! long-chain fatty acid anion + +[Term] +id: CHEBI:15956 +name: biotin +namespace: chebi_ontology +alt_id: CHEBI:13905 +alt_id: CHEBI:22882 +alt_id: CHEBI:22884 +alt_id: CHEBI:3108 +alt_id: CHEBI:41236 +def: "An organic heterobicyclic compound that consists of 2-oxohexahydro-1H-thieno[3,4-d]imidazole having a valeric acid substituent attached to the tetrahydrothiophene ring. The parent of the class of biotins." [] +subset: 3_STAR +synonym: "(+)-cis-Hexahydro-2-oxo-1H-thieno[3,4]imidazole-4-valeric acid" RELATED [HMDB] +synonym: "(3aS,4S,6aR)-Hexahydro-2-oxo-1H-thieno[3,4-d]imidazole-4-valeric acid" RELATED [HMDB] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "244.088" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "244.31172" RELATED MASS [ChEBI] +synonym: "5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanoic acid" RELATED [HMDB] +synonym: "5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]12CS[C@@H](CCCCC(O)=O)[C@@]1([H])NC(=O)N2" RELATED SMILES [ChEBI] +synonym: "BIOTIN" EXACT [PDBeChem] +synonym: "Biotin" EXACT [KEGG_COMPOUND] +synonym: "biotina" RELATED INN [ChemIDplus] +synonym: "biotine" RELATED INN [ChemIDplus] +synonym: "biotinum" RELATED INN [ChemIDplus] +synonym: "C10H16N2O3S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "cis-(+)-Tetrahydro-2-oxothieno[3,4]imidazoline-4-valeric acid" RELATED [HMDB] +synonym: "cis-Hexahydro-2-oxo-1H-thieno(3,4)imidazole-4-valeric acid" RELATED [HMDB] +synonym: "cis-Tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid" RELATED [HMDB] +synonym: "Coenzyme R" RELATED [KEGG_COMPOUND] +synonym: "D-(+)-biotin" RELATED [NIST_Chemistry_WebBook] +synonym: "D-Biotin" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C10H16N2O3S/c13-8(14)4-2-1-3-7-9-6(5-16-7)11-10(15)12-9/h6-7,9H,1-5H2,(H,13,14)(H2,11,12,15)/t6-,7-,9-/m0/s1" RELATED InChI [ChEBI] +synonym: "vitamin B7" RELATED [NIST_Chemistry_WebBook] +synonym: "Vitamin H" RELATED [KEGG_COMPOUND] +synonym: "YBJHBAHKTGYVGT-ZKWXMUAHSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:86838 "Beilstein" +xref: CAS:58-85-5 "NIST Chemistry WebBook" +xref: COMe:MOL000144 +xref: Drug_Central:373 "DrugCentral" +xref: DrugBank:DB00121 +xref: Gmelin:1918703 "Gmelin" +xref: HMDB:HMDB00030 +xref: KEGG:C00120 +xref: KEGG:D00029 +xref: KNApSAcK:C00000756 +xref: LINCS:LSM-3994 +xref: MetaCyc:BIOTIN +xref: PDBeChem:BTN +xref: PMID:11435506 "Europe PMC" +xref: PMID:11800048 "Europe PMC" +xref: PMID:12055344 "Europe PMC" +xref: PMID:12803839 "Europe PMC" +xref: PMID:15012185 "Europe PMC" +xref: PMID:15202718 "Europe PMC" +xref: PMID:15272000 "Europe PMC" +xref: PMID:15899401 "Europe PMC" +xref: PMID:16419467 "Europe PMC" +xref: PMID:16676358 "Europe PMC" +xref: PMID:16677798 "Europe PMC" +xref: PMID:16769720 "Europe PMC" +xref: PMID:17297119 "Europe PMC" +xref: PMID:18452485 "Europe PMC" +xref: PMID:18509457 "Europe PMC" +xref: PMID:19319844 "Europe PMC" +xref: PMID:19727438 "Europe PMC" +xref: PMID:19928962 "Europe PMC" +xref: PMID:20967359 "Europe PMC" +xref: PMID:20974274 "Europe PMC" +xref: PMID:21248194 "Europe PMC" +xref: PMID:21356565 "Europe PMC" +xref: PMID:21373679 "Europe PMC" +xref: PMID:21596550 "Europe PMC" +xref: PMID:21871906 "Europe PMC" +xref: PMID:25515858 "Europe PMC" +xref: Reaxys:86838 "Reaxys" +xref: Wikipedia:Biotin +is_a: CHEBI:51570 ! biotins +relationship: has_role CHEBI:23354 ! coenzyme +relationship: has_role CHEBI:26348 ! prosthetic group +relationship: has_role CHEBI:75769 ! B vitamin +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:57586 ! biotinate + +[Term] +id: CHEBI:15965 +name: D-hexose phosphate +namespace: chebi_ontology +alt_id: CHEBI:12992 +alt_id: CHEBI:4196 +def: "Any mono-phosphorylated D-hexose having a chain of six carbon atoms in the molecule." [] +subset: 3_STAR +synonym: "D-Hexose phosphate" EXACT [KEGG_COMPOUND] +synonym: "D-hexose phosphate" EXACT [UniProt] +xref: KEGG:C02672 +is_a: CHEBI:47878 ! hexose phosphate + +[Term] +id: CHEBI:15978 +name: sn-glycerol 3-phosphate +namespace: chebi_ontology +alt_id: CHEBI:10648 +alt_id: CHEBI:12843 +alt_id: CHEBI:12848 +alt_id: CHEBI:26705 +alt_id: CHEBI:42793 +def: "An sn-glycerol 3-phosphate having unsubstituted hydroxy groups." [] +subset: 3_STAR +synonym: "(2R)-2,3-dihydroxypropyl dihydrogen phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "(R)-glycerol 1-phosphate" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "172.014" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "172.07372" RELATED MASS [ChEBI] +synonym: "AWUCVROLDVIAJX-GSVOUGTGSA-N" RELATED InChIKey [ChEBI] +synonym: "C3H9O6P" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-(glycerol 1-phosphate)" RELATED [CBN] +synonym: "D-Glycerol 1-phosphate" RELATED [KEGG_COMPOUND] +synonym: "Glycerol-3-phosphate" RELATED [KEGG_COMPOUND] +synonym: "Glycerophosphoric acid" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/t3-/m1/s1" RELATED InChI [ChEBI] +synonym: "L-(glycerol 3-phosphate)" RELATED [CBN] +synonym: "OC[C@@H](O)COP(O)(O)=O" RELATED SMILES [ChEBI] +synonym: "phosphoric acid mono-((R)-2,3-dihydroxy-propyl) ester" RELATED [ChEBI] +synonym: "Phosphorsaeure-mono-((R)-2,3-dihydroxy-propylester)" RELATED [ChEBI] +synonym: "sn-glycerol 3-(dihydrogen phosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "sn-Glycerol 3-phosphate" EXACT [KEGG_COMPOUND] +synonym: "SN-GLYCEROL-3-PHOSPHATE" RELATED [PDBeChem] +synonym: "sn-Gro-1-P" RELATED [KEGG_COMPOUND] +xref: Beilstein:1723975 "Beilstein" +xref: CAS:17989-41-2 "KEGG COMPOUND" +xref: KEGG:C00093 +xref: KNApSAcK:C00007288 +xref: MetaCyc:GLYCEROL-3P +xref: PDBeChem:G3P +xref: PDBeChem:GP9 +xref: PMID:16745347 "Europe PMC" +xref: PMID:1694860 "Europe PMC" +xref: PMID:19049970 "Europe PMC" +xref: Reaxys:1723975 "Reaxys" +is_a: CHEBI:14336 ! glycerol 1-phosphate +is_a: CHEBI:26706 ! sn-glycerol 3-phosphates +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:57597 ! sn-glycerol 3-phosphate(2-) +relationship: is_enantiomer_of CHEBI:16221 ! sn-glycerol 1-phosphate + +[Term] +id: CHEBI:15993 +name: N-acyl-D-glucosamine 6-phosphate +namespace: chebi_ontology +alt_id: CHEBI:12477 +alt_id: CHEBI:21636 +alt_id: CHEBI:7227 +def: "An N-acyl-D-glucosamine phosphate having the phosphate group placed at the 6-position." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "286.033" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "286.15320" RELATED MASS [ChEBI] +synonym: "C7H13NO9PR" RELATED FORMULA [ChEBI] +synonym: "N-Acyl-D-glucosamine 6-phosphate" EXACT [KEGG_COMPOUND] +synonym: "N-acyl-D-glucosamine 6-phosphates" RELATED [ChEBI] +synonym: "O[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H](O)[C@H]1NC([*])=O" RELATED SMILES [ChEBI] +xref: KEGG:C04136 +is_a: CHEBI:21637 ! N-acyl-D-glucosamine phosphate +relationship: is_conjugate_acid_of CHEBI:57599 ! N-acyl-D-glucosamine 6-phosphate(2-) + +[Term] +id: CHEBI:15996 +name: GTP +namespace: chebi_ontology +alt_id: CHEBI:13342 +alt_id: CHEBI:24451 +alt_id: CHEBI:42934 +alt_id: CHEBI:5234 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "5'-GTP" RELATED [ChemIDplus] +synonym: "522.991" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "523.18062" RELATED MASS [ChEBI] +synonym: "C10H16N5O14P3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "GTP" EXACT [KEGG_COMPOUND] +synonym: "guanosine 5'-(tetrahydrogen triphosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "Guanosine 5'-triphosphate" RELATED [KEGG_COMPOUND] +synonym: "guanosine 5'-triphosphoric acid" RELATED [ChemIDplus] +synonym: "guanosine triphosphate" RELATED [ChemIDplus] +synonym: "GUANOSINE-5'-TRIPHOSPHATE" RELATED [PDBeChem] +synonym: "H4gtp" RELATED [ChEBI] +synonym: "InChI=1S/C10H16N5O14P3/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "XKMLYUALXHKNFT-UUOKFMHZSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1201437 "ChemIDplus" +xref: Beilstein:74004 "Beilstein" +xref: CAS:86-01-1 "KEGG COMPOUND" +xref: DrugBank:DB04137 +xref: KEGG:C00044 +xref: KNApSAcK:C00007223 +xref: PDBeChem:GTP +is_a: CHEBI:37045 ! purine ribonucleoside 5'-triphosphate +is_a: CHEBI:37121 ! guanosine 5'-phosphate +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:57600 ! GTP(3-) + +[Term] +id: CHEBI:16002 +name: D-glucaric acid +namespace: chebi_ontology +alt_id: CHEBI:20982 +alt_id: CHEBI:4155 +def: "The D-enantiomer of glucaric acid." [] +subset: 3_STAR +synonym: "(2R,3S,4S,5S)-2,3,4,5-tetrahydroxyhexanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "210.038" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "210.13880" RELATED MASS [ChEBI] +synonym: "C6H10O8" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-(+)-saccharic acid" RELATED [HMDB] +synonym: "D-Glucaric acid" EXACT [KEGG_COMPOUND] +synonym: "D-glucaric acid" EXACT [ChEBI] +synonym: "D-glucaric acid" EXACT IUPAC_NAME [IUPAC] +synonym: "D-Glucosaccharic acid" RELATED [KEGG_COMPOUND] +synonym: "D-Saccharic acid" RELATED [KEGG_COMPOUND] +synonym: "DSLZVSRJTYRBFB-LLEIAEIESA-N" RELATED InChIKey [ChEBI] +synonym: "Glucaric acid" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C6H10O8/c7-1(3(9)5(11)12)2(8)4(10)6(13)14/h1-4,7-10H,(H,11,12)(H,13,14)/t1-,2-,3-,4+/m0/s1" RELATED InChI [ChEBI] +synonym: "L-Gularic acid" RELATED [KEGG_COMPOUND] +synonym: "O[C@@H]([C@H](O)[C@@H](O)C(O)=O)[C@H](O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "saccharic acid" RELATED [NIST_Chemistry_WebBook] +xref: Beilstein:1728113 "Beilstein" +xref: CAS:87-73-0 "KEGG COMPOUND" +xref: Gmelin:604332 "Gmelin" +xref: HMDB:HMDB29881 +xref: KEGG:C00818 +xref: MetaCyc:D-GLUCARATE +xref: PMID:18384797 "Europe PMC" +xref: PMID:21269605 "Europe PMC" +xref: PMID:24333274 "Europe PMC" +xref: Reaxys:1728113 "Reaxys" +xref: Wikipedia:Saccharic_acid +is_a: CHEBI:17301 ! glucaric acid +relationship: has_role CHEBI:35610 ! antineoplastic agent +relationship: is_conjugate_acid_of CHEBI:33801 ! D-glucarate(1-) +relationship: is_enantiomer_of CHEBI:47537 ! L-glucaric acid + +[Term] +id: CHEBI:16004 +name: (R)-lactate +namespace: chebi_ontology +alt_id: CHEBI:11001 +alt_id: CHEBI:18684 +def: "An optically active form of lactate having (R)-configuration." [] +subset: 3_STAR +synonym: "(2R)-2-hydroxypropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "(R)-lactate" EXACT [UniProt] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "89.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "89.07000" RELATED MASS [ChEBI] +synonym: "C3H5O3" RELATED FORMULA [ChEBI] +synonym: "C[C@@H](O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "D-2-hydroxypropanoate" RELATED [ChEBI] +synonym: "D-2-hydroxypropionate" RELATED [ChEBI] +synonym: "D-lactate" RELATED [ChEBI] +synonym: "InChI=1S/C3H6O3/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6)/p-1/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "JVTAAEKCZFNVCJ-UWTATZPHSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:4655978 "Beilstein" +xref: Gmelin:362716 "Gmelin" +xref: KEGG:C00256 "ChEBI" +xref: MetaCyc:D-LACTATE +xref: Reaxys:4655978 "Reaxys" +is_a: CHEBI:24996 ! lactate +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: is_conjugate_base_of CHEBI:42111 ! (R)-lactic acid +relationship: is_enantiomer_of CHEBI:16651 ! (S)-lactate + +[Term] +id: CHEBI:16016 +name: dihydroxyacetone +namespace: chebi_ontology +alt_id: CHEBI:14340 +alt_id: CHEBI:24354 +alt_id: CHEBI:39809 +alt_id: CHEBI:5453 +def: "A ketotriose consisting of acetone bearing hydroxy substituents at positions 1 and 3. The simplest member of the class of ketoses and the parent of the class of glycerones." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,3-Dihydroxy-2-propanone" RELATED [KEGG_COMPOUND] +synonym: "1,3-Dihydroxyacetone" RELATED [KEGG_COMPOUND] +synonym: "1,3-Dihydroxydimethyl ketone" RELATED [ChemIDplus] +synonym: "1,3-Dihydroxypropan-2-one" RELATED [KEGG_COMPOUND] +synonym: "1,3-dihydroxypropan-2-one" EXACT IUPAC_NAME [IUPAC] +synonym: "1,3-Dihydroxypropanone" RELATED [ChemIDplus] +synonym: "1,3-propanediol-2-one" RELATED [ChEBI] +synonym: "90.032" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "90.078" RELATED MASS [ChEBI] +synonym: "alpha,alpha'-dihydroxyacetone" RELATED [HMDB] +synonym: "Bis(hydroxymethyl) ketone" RELATED [HMDB] +synonym: "C(CO)(CO)=O" RELATED SMILES [ChEBI] +synonym: "C3H6O3" RELATED FORMULA [ChEBI] +synonym: "DHA" RELATED [ChEBI] +synonym: "DIHYDROXYACETONE" EXACT [PDBeChem] +synonym: "Dihydroxyacetone" EXACT [KEGG_COMPOUND] +synonym: "dihydroxyacetone" EXACT [UniProt] +synonym: "Glycerone" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C3H6O3/c4-1-3(6)2-5/h4-5H,1-2H2" RELATED InChI [ChEBI] +synonym: "RXKJFZQQPQGTFL-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1740268 "Beilstein" +xref: CAS:96-26-4 "KEGG COMPOUND" +xref: DrugBank:DB01775 +xref: HMDB:HMDB01882 +xref: KEGG:C00184 +xref: KEGG:D07841 +xref: MetaCyc:DIHYDROXYACETONE +xref: PDBeChem:2HA +xref: PMID:20936361 "Europe PMC" +xref: PMID:21549029 "Europe PMC" +xref: PMID:21598406 "Europe PMC" +xref: PMID:23543734 "Europe PMC" +xref: PMID:23554234 "Europe PMC" +xref: PMID:23748086 "Europe PMC" +xref: PMID:24209782 "Europe PMC" +xref: Reaxys:1740268 "Reaxys" +xref: Wikipedia:Dihydroxyacetone +is_a: CHEBI:24982 ! ketotriose +relationship: has_role CHEBI:35718 ! antifungal agent +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:16027 +name: AMP +namespace: chebi_ontology +alt_id: CHEBI:12056 +alt_id: CHEBI:13234 +alt_id: CHEBI:13235 +alt_id: CHEBI:13736 +alt_id: CHEBI:13740 +alt_id: CHEBI:22242 +alt_id: CHEBI:22245 +alt_id: CHEBI:2356 +alt_id: CHEBI:40510 +alt_id: CHEBI:40726 +alt_id: CHEBI:40786 +alt_id: CHEBI:40826 +alt_id: CHEBI:47222 +def: "A purine ribonucleoside 5'-monophosphate having adenine as the nucleobase." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "347.063" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "347.22120" RELATED MASS [ChEBI] +synonym: "5'-Adenosine monophosphate" RELATED [KEGG_COMPOUND] +synonym: "5'-Adenylic acid" RELATED [KEGG_COMPOUND] +synonym: "5'-adenylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "5'-AMP" RELATED [KEGG_COMPOUND] +synonym: "5'-O-phosphonoadenosine" RELATED [CBN] +synonym: "adenosine 5'-(dihydrogen phosphate)" RELATED [CBN] +synonym: "Adenosine 5'-monophosphate" RELATED [KEGG_COMPOUND] +synonym: "Adenosine 5'-phosphate" RELATED [KEGG_COMPOUND] +synonym: "ADENOSINE MONOPHOSPHATE" RELATED [PDBeChem] +synonym: "adenosine phosphate" RELATED [ChemIDplus] +synonym: "adenosine phosphate" RELATED INN [WHO_MedNet] +synonym: "Adenosine-5'-monophosphoric acid" RELATED [HMDB] +synonym: "adenosine-5'P" RELATED [CBN] +synonym: "adenosini phosphas" RELATED INN [WHO_MedNet] +synonym: "Adenylate" RELATED [KEGG_COMPOUND] +synonym: "Adenylic acid" RELATED [KEGG_COMPOUND] +synonym: "Ado5'P" RELATED [CBN] +synonym: "AMP" EXACT [KEGG_COMPOUND] +synonym: "C10H14N5O7P" RELATED FORMULA [KEGG_COMPOUND] +synonym: "fosfato de adenosina" RELATED INN [WHO_MedNet] +synonym: "InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "pA" RELATED [ChEBI] +synonym: "PAdo" RELATED [CBN] +synonym: "phosphate d'adenosine" RELATED INN [WHO_MedNet] +synonym: "UDMBCSSLTHHNCD-KQYNXXCUSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:54612 "Beilstein" +xref: CAS:61-19-8 "KEGG COMPOUND" +xref: COMe:MOL000174 +xref: Drug_Central:92 "DrugCentral" +xref: DrugBank:DB00131 +xref: Gmelin:38561 "Gmelin" +xref: HMDB:HMDB00045 +xref: KEGG:C00020 +xref: KEGG:D02769 +xref: KNApSAcK:C00019347 +xref: LINCS:LSM-5914 +xref: MetaCyc:AMP +xref: PDBeChem:AMP +xref: PMID:11307758 "Europe PMC" +xref: PMID:12020809 "Europe PMC" +xref: PMID:12181610 "Europe PMC" +xref: PMID:15148540 "Europe PMC" +xref: PMID:15946677 "Europe PMC" +xref: PMID:16091942 "Europe PMC" +xref: PMID:16250233 "Europe PMC" +xref: PMID:16295522 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:22215671 "Europe PMC" +xref: PMID:22624049 "Europe PMC" +xref: PMID:2559771 "Europe PMC" +xref: Reaxys:54612 "Reaxys" +xref: Wikipedia:Adenylic_acid +is_a: CHEBI:37096 ! adenosine 5'-phosphate +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: has_role CHEBI:63332 ! EC 3.1.3.1 (alkaline phosphatase) inhibitor +relationship: has_role CHEBI:65056 ! EC 3.1.3.11 (fructose-bisphosphatase) inhibitor +relationship: has_role CHEBI:65057 ! adenosine A1 receptor agonist +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:456215 ! AMP(2-) +relationship: is_conjugate_base_of CHEBI:40721 ! AMP(1+) + +[Term] +id: CHEBI:16040 +name: cytosine +namespace: chebi_ontology +alt_id: CHEBI:14066 +alt_id: CHEBI:23531 +alt_id: CHEBI:4072 +alt_id: CHEBI:41732 +def: "An aminopyrimidine that is pyrimidin-2-one having the amino group located at position 4." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "111.043" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "111.10212" RELATED MASS [ChEBI] +synonym: "4-amino-2(1H)-pyrimidinone" RELATED [NIST_Chemistry_WebBook] +synonym: "4-amino-2-hydroxypyrimidine" RELATED [NIST_Chemistry_WebBook] +synonym: "4-aminopyrimidin-2(1H)-one" EXACT IUPAC_NAME [IUPAC] +synonym: "C" RELATED [ChEBI] +synonym: "C4H5N3O" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cyt" RELATED [CBN] +synonym: "Cytosin" RELATED [ChEBI] +synonym: "Cytosine" EXACT [KEGG_COMPOUND] +synonym: "cytosine" EXACT [UniProt] +synonym: "InChI=1S/C4H5N3O/c5-3-1-2-6-4(8)7-3/h1-2H,(H3,5,6,7,8)" RELATED InChI [ChEBI] +synonym: "Nc1cc[nH]c(=O)n1" RELATED SMILES [ChEBI] +synonym: "OPTASPLRGRRNAP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Zytosin" RELATED [ChEBI] +xref: Beilstein:2637 "Beilstein" +xref: CAS:71-30-7 "NIST Chemistry WebBook" +xref: Gmelin:82472 "Gmelin" +xref: HMDB:HMDB00630 +xref: KEGG:C00380 +xref: KNApSAcK:C00001498 +xref: MetaCyc:CYTOSINE +xref: PDBeChem:CYT +xref: PMID:14253484 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:7877593 "Europe PMC" +xref: Reaxys:2637 "Reaxys" +xref: Wikipedia:Cytosine +is_a: CHEBI:26432 ! pyrimidine nucleobase +is_a: CHEBI:38337 ! pyrimidone +is_a: CHEBI:38338 ! aminopyrimidine +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:16042 +name: halide anion +namespace: chebi_ontology +alt_id: CHEBI:14384 +alt_id: CHEBI:5605 +def: "A monoatomic monoanion resulting from the addition of an electron to any halogen atom." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "0.0" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "0.0" RELATED MASS [ChEBI] +synonym: "[*-]" RELATED SMILES [ChEBI] +synonym: "a halide anion" RELATED [UniProt] +synonym: "Halide" RELATED [KEGG_COMPOUND] +synonym: "halide anions" RELATED [ChEBI] +synonym: "halide ions" EXACT IUPAC_NAME [IUPAC] +synonym: "halide(1-)" RELATED [ChEBI] +synonym: "halides" RELATED [ChEBI] +synonym: "halogen anion" RELATED [ChEBI] +synonym: "HX" RELATED [KEGG_COMPOUND] +synonym: "X" RELATED FORMULA [KEGG_COMPOUND] +xref: KEGG:C00462 +is_a: CHEBI:33429 ! monoatomic monoanion +is_a: CHEBI:79389 ! monovalent inorganic anion + +[Term] +id: CHEBI:16062 +name: N-acyl-D-mannosamine +namespace: chebi_ontology +alt_id: CHEBI:12479 +alt_id: CHEBI:12583 +alt_id: CHEBI:21641 +alt_id: CHEBI:57625 +alt_id: CHEBI:7229 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "206.066" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "206.17330" RELATED MASS [ChEBI] +synonym: "an N-acyl-D-mannosamine" RELATED [UniProt] +synonym: "C7H12NO6R" RELATED FORMULA [ChEBI] +synonym: "N-Acyl-D-mannosamine" EXACT [KEGG_COMPOUND] +synonym: "OC[C@H](O)[C@H](O)[C@@H](O)[C@@H](NC([*])=O)C=O" RELATED SMILES [ChEBI] +xref: KEGG:C00625 +is_a: CHEBI:21656 ! N-acyl-hexosamine +is_a: CHEBI:25166 ! mannosamine +relationship: has_role CHEBI:75771 ! mouse metabolite + +[Term] +id: CHEBI:16072 +name: maleimide +namespace: chebi_ontology +alt_id: CHEBI:14560 +alt_id: CHEBI:6654 +def: "A cyclic dicarboximide in which the two carboacyl groups on nitrogen together with the nitogen itself form a 1H-pyrrole-2,5-dione structure." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1H-pyrrole-2,5-dione" EXACT IUPAC_NAME [IUPAC] +synonym: "2,5-Pyrroledione" RELATED [KEGG_COMPOUND] +synonym: "97.016" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "97.07210" RELATED MASS [ChEBI] +synonym: "C4H3NO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H3NO2/c6-3-1-2-4(7)5-3/h1-2H,(H,5,6,7)" RELATED InChI [ChEBI] +synonym: "Maleic imide" RELATED [ChemIDplus] +synonym: "Maleimide" EXACT [KEGG_COMPOUND] +synonym: "O=C1NC(=O)C=C1" RELATED SMILES [ChEBI] +synonym: "PEEHTFAAVSWFBL-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:541-59-3 "KEGG COMPOUND" +xref: KEGG:C07272 +xref: MetaCyc:MALEIMIDE +xref: PMID:11961142 "Europe PMC" +xref: Reaxys:106910 "Reaxys" +xref: Wikipedia:Maleimide +is_a: CHEBI:55417 ! maleimides +relationship: has_parent_hydride CHEBI:19203 ! 1H-pyrrole +relationship: has_role CHEBI:50750 ! EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor + +[Term] +id: CHEBI:16080 +name: gamma-amino-beta-hydroxybutyric acid +namespace: chebi_ontology +alt_id: CHEBI:1780 +alt_id: CHEBI:20311 +def: "A gamma-amino acid comprising 4-aminobutyric acid having a 2-hydroxy substituent." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "119.058" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "119.11920" RELATED MASS [ChEBI] +synonym: "3-hydroxy-GABA" RELATED [ChemIDplus] +synonym: "4-Amino-3-hydroxybutanoic acid" RELATED [KEGG_COMPOUND] +synonym: "4-amino-3-hydroxybutanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "4-amino-3-hydroxybutyric acid" RELATED [ChemIDplus] +synonym: "C4H9NO3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "GABOB" RELATED [KEGG_COMPOUND] +synonym: "gamma-Amino-beta-hydroxybutyric acid" EXACT [KEGG_COMPOUND] +synonym: "gamma-amino-beta-hydroxybutyric acid" EXACT [UniProt] +synonym: "InChI=1S/C4H9NO3/c5-2-3(6)1-4(7)8/h3,6H,1-2,5H2,(H,7,8)" RELATED InChI [ChEBI] +synonym: "NCC(O)CC(O)=O" RELATED SMILES [ChEBI] +synonym: "YQGDEPYYFWUPGO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1721708 "Beilstein" +xref: Beilstein:1752568 "Beilstein" +xref: CAS:352-21-6 "ChemIDplus" +xref: Drug_Central:1263 "DrugCentral" +xref: KEGG:C03678 +xref: KEGG:D00174 +is_a: CHEBI:33707 ! gamma-amino acid +is_a: CHEBI:35969 ! 3-hydroxy monocarboxylic acid +relationship: has_functional_parent CHEBI:30772 ! butyric acid +relationship: is_conjugate_acid_of CHEBI:11955 ! 4-amino-3-hydroxybutanoate +relationship: is_tautomer_of CHEBI:57630 ! gamma-amino-beta-hydroxybutyric acid zwitterion + +[Term] +id: CHEBI:16094 +name: thiosulfate(2-) +namespace: chebi_ontology +alt_id: CHEBI:15242 +alt_id: CHEBI:45922 +alt_id: CHEBI:9569 +def: "A divalent inorganic anion obtained by removal of both protons from thiosulfuric acid." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "111.929" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "112.13020" RELATED MASS [ChEBI] +synonym: "[O-]S([S-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "[SO3S](2-)" RELATED [IUPAC] +synonym: "DHCDFWKWKRSZHF-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "Hyposulfite" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/H2O3S2/c1-5(2,3)4/h(H2,1,2,3,4)/p-2" RELATED InChI [ChEBI] +synonym: "O3S2" RELATED FORMULA [ChEBI] +synonym: "S2O3" RELATED [ChEBI] +synonym: "S2O3(2-)" RELATED [IUPAC] +synonym: "sulfurothioate" EXACT IUPAC_NAME [IUPAC] +synonym: "TETRATHIONATE" RELATED [PDBeChem] +synonym: "Thiosulfate" RELATED [KEGG_COMPOUND] +synonym: "thiosulfate" EXACT IUPAC_NAME [IUPAC] +synonym: "thiosulfate ion(2-)" RELATED [ChemIDplus] +synonym: "thiosulphate" RELATED [ChemIDplus] +synonym: "trioxido-1kappa(3)O-disulfate(S--S)(2-)" RELATED [IUPAC] +synonym: "trioxidosulfidosulfate(2-)" EXACT IUPAC_NAME [IUPAC] +xref: CAS:14383-50-7 "ChemIDplus" +xref: Gmelin:2031 "Gmelin" +xref: PDBeChem:THJ +is_a: CHEBI:33482 ! sulfur oxoanion +is_a: CHEBI:48154 ! sulfur oxide +is_a: CHEBI:79388 ! divalent inorganic anion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:33541 ! thiosulfate(1-) + +[Term] +id: CHEBI:16134 +name: ammonia +namespace: chebi_ontology +alt_id: CHEBI:13405 +alt_id: CHEBI:13406 +alt_id: CHEBI:13407 +alt_id: CHEBI:13771 +alt_id: CHEBI:22533 +alt_id: CHEBI:44269 +alt_id: CHEBI:44284 +alt_id: CHEBI:44404 +alt_id: CHEBI:7434 +def: "An azane that consists of a single nitrogen atom covelently bonded to three hydrogen atoms." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "17.027" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "17.03056" RELATED MASS [ChEBI] +synonym: "[H]N([H])[H]" RELATED SMILES [ChEBI] +synonym: "[NH3]" RELATED [MolBase] +synonym: "AMMONIA" EXACT [PDBeChem] +synonym: "Ammonia" EXACT [KEGG_COMPOUND] +synonym: "ammonia" EXACT IUPAC_NAME [IUPAC] +synonym: "ammoniac" RELATED [ChEBI] +synonym: "Ammoniak" RELATED [ChemIDplus] +synonym: "amoniaco" RELATED [ChEBI] +synonym: "azane" EXACT IUPAC_NAME [IUPAC] +synonym: "H3N" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/H3N/h1H3" RELATED InChI [ChEBI] +synonym: "NH3" RELATED [KEGG_COMPOUND] +synonym: "NH3" RELATED [UniProt] +synonym: "NH3" RELATED [IUPAC] +synonym: "QGZKDVFQNNGYKY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "R-717" RELATED [ChEBI] +synonym: "spirit of hartshorn" RELATED [ChemIDplus] +xref: Beilstein:3587154 "Beilstein" +xref: CAS:7664-41-7 "ChemIDplus" +xref: Drug_Central:4625 "DrugCentral" +xref: Gmelin:79 "Gmelin" +xref: HMDB:HMDB00051 +xref: KEGG:C00014 +xref: KEGG:D02916 +xref: KNApSAcK:C00007267 +xref: MetaCyc:AMMONIA +xref: MolBase:930 +xref: PDBeChem:NH3 +xref: PMID:110589 "Europe PMC" +xref: PMID:11139349 "Europe PMC" +xref: PMID:11540049 "Europe PMC" +xref: PMID:11746427 "Europe PMC" +xref: PMID:11783653 "Europe PMC" +xref: PMID:13753780 "Europe PMC" +xref: PMID:14663195 "Europe PMC" +xref: PMID:15092448 "Europe PMC" +xref: PMID:15094021 "Europe PMC" +xref: PMID:15554424 "Europe PMC" +xref: PMID:15969015 "Europe PMC" +xref: PMID:16008360 "Europe PMC" +xref: PMID:16050680 "Europe PMC" +xref: PMID:16348008 "Europe PMC" +xref: PMID:16349403 "Europe PMC" +xref: PMID:16614889 "Europe PMC" +xref: PMID:16664306 "Europe PMC" +xref: PMID:16842901 "Europe PMC" +xref: PMID:17025297 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:17569513 "Europe PMC" +xref: PMID:17737668 "Europe PMC" +xref: PMID:18670398 "Europe PMC" +xref: PMID:22002069 "Europe PMC" +xref: PMID:22081570 "Europe PMC" +xref: PMID:22088435 "Europe PMC" +xref: PMID:22100291 "Europe PMC" +xref: PMID:22130175 "Europe PMC" +xref: PMID:22150211 "Europe PMC" +xref: PMID:22240068 "Europe PMC" +xref: PMID:22290316 "Europe PMC" +xref: PMID:22342082 "Europe PMC" +xref: PMID:22385337 "Europe PMC" +xref: PMID:22443779 "Europe PMC" +xref: PMID:22560242 "Europe PMC" +xref: Reaxys:3587154 "Reaxys" +xref: Wikipedia:Ammonia +is_a: CHEBI:35107 ! azane +is_a: CHEBI:37176 ! mononuclear parent hydride +relationship: has_role CHEBI:50910 ! neurotoxin +relationship: has_role CHEBI:59740 ! nucleophilic reagent +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77941 ! EC 3.5.1.4 (amidase) inhibitor +relationship: has_role CHEBI:78433 ! refrigerant +relationship: is_conjugate_acid_of CHEBI:29337 ! azanide +relationship: is_conjugate_base_of CHEBI:28938 ! ammonium + +[Term] +id: CHEBI:16136 +name: hydrogen sulfide +namespace: chebi_ontology +alt_id: CHEBI:13356 +alt_id: CHEBI:14414 +alt_id: CHEBI:24639 +alt_id: CHEBI:43058 +alt_id: CHEBI:45489 +alt_id: CHEBI:5787 +def: "A sulfur hydride consisting of s single sulfur atom bonded to two hydrogen atoms. A highly poisonous, flammable gas with a characteristic odour of rotten eggs, it is often produced by bacterial decomposition of organic matter in the absence of oxygen." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "33.988" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "34.08188" RELATED MASS [ChEBI] +synonym: "[H]S[H]" RELATED SMILES [ChEBI] +synonym: "[SH2]" RELATED [MolBase] +synonym: "acide sulfhydrique" RELATED [ChemIDplus] +synonym: "dihydridosulfur" EXACT IUPAC_NAME [IUPAC] +synonym: "dihydrogen monosulfide" RELATED [NIST_Chemistry_WebBook] +synonym: "dihydrogen sulfide" RELATED [NIST_Chemistry_WebBook] +synonym: "dihydrogen(sulfide)" EXACT IUPAC_NAME [IUPAC] +synonym: "H2S" RELATED [IUPAC] +synonym: "H2S" RELATED [KEGG_COMPOUND] +synonym: "H2S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "hydrogen monosulfide" RELATED [NIST_Chemistry_WebBook] +synonym: "Hydrogen sulfide" EXACT [KEGG_COMPOUND] +synonym: "hydrogen sulfide" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogen sulphide" RELATED [ChemIDplus] +synonym: "Hydrogen-sulfide" RELATED [KEGG_COMPOUND] +synonym: "hydrogene sulfure" RELATED [ChemIDplus] +synonym: "HYDROSULFURIC ACID" RELATED [PDBeChem] +synonym: "InChI=1S/H2S/h1H2" RELATED InChI [ChEBI] +synonym: "RWSOTUBLDIXVET-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Schwefelwasserstoff" RELATED [ChemIDplus] +synonym: "sulfane" EXACT IUPAC_NAME [IUPAC] +synonym: "Sulfide" RELATED [KEGG_COMPOUND] +synonym: "sulfure d'hydrogene" RELATED [ChEBI] +xref: Beilstein:3535004 "Beilstein" +xref: CAS:7783-06-4 "KEGG COMPOUND" +xref: Drug_Central:4260 "DrugCentral" +xref: Gmelin:303 "Gmelin" +xref: KEGG:C00283 +xref: KNApSAcK:C00007266 +xref: MolBase:1709 +xref: PDBeChem:H2S +xref: PMID:11788560 "Europe PMC" +xref: PMID:14654297 "Europe PMC" +xref: PMID:15003943 "Europe PMC" +xref: PMID:15607739 "Europe PMC" +xref: PMID:16446402 "Europe PMC" +xref: PMID:18098324 "Europe PMC" +xref: PMID:18524810 "Europe PMC" +xref: PMID:18948540 "Europe PMC" +xref: PMID:19695225 "Europe PMC" +xref: PMID:22004989 "Europe PMC" +xref: PMID:22378060 "Europe PMC" +xref: PMID:22448627 "Europe PMC" +xref: PMID:22473176 "Europe PMC" +xref: PMID:22486842 "Europe PMC" +xref: PMID:22520971 "Europe PMC" +xref: PMID:22787557 "Europe PMC" +xref: UM-BBD_compID:c0239 "ChEBI" +xref: Wikipedia:Hydrogen_sulfide +is_a: CHEBI:33405 ! hydracid +is_a: CHEBI:33535 ! sulfur hydride +is_a: CHEBI:37176 ! mononuclear parent hydride +relationship: has_role CHEBI:27026 ! toxin +relationship: has_role CHEBI:35620 ! vasodilator agent +relationship: has_role CHEBI:50902 ! genotoxin +relationship: has_role CHEBI:62488 ! signalling molecule +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:29919 ! hydrosulfide +relationship: is_conjugate_base_of CHEBI:30488 ! sulfonium + +[Term] +id: CHEBI:16150 +name: benzoate +namespace: chebi_ontology +alt_id: CHEBI:13879 +alt_id: CHEBI:22717 +def: "The simplest member of the class of benzoates that is the conjugate base of benzoic acid, comprising a benzoic acid core with a proton missing to give a charge of -1." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "121.029" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "121.11340" RELATED MASS [ChEBI] +synonym: "[O-]C(=O)c1ccccc1" RELATED SMILES [ChEBI] +synonym: "Benzenecarboxylate" RELATED [HMDB] +synonym: "Benzeneformate" RELATED [HMDB] +synonym: "Benzenemethanoate" RELATED [HMDB] +synonym: "benzoate" EXACT IUPAC_NAME [IUPAC] +synonym: "benzoate" EXACT [UniProt] +synonym: "benzoate anion" RELATED [NIST_Chemistry_WebBook] +synonym: "benzoic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "C7H5O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C7H6O2/c8-7(9)6-4-2-1-3-5-6/h1-5H,(H,8,9)/p-1" RELATED InChI [ChEBI] +synonym: "Phenylcarboxylate" RELATED [HMDB] +synonym: "Phenylformate" RELATED [HMDB] +synonym: "WPYMKLBDIGXBTP-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:1862486 "Beilstein" +xref: CAS:766-76-7 "NIST Chemistry WebBook" +xref: Gmelin:2945 "Gmelin" +xref: HMDB:HMDB01870 +xref: KEGG:C00180 "ChEBI" +xref: MetaCyc:BENZOATE +xref: Reaxys:1862486 "Reaxys" +xref: UM-BBD_compID:c0121 "ChEBI" +is_a: CHEBI:22718 ! benzoates +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76967 ! human xenobiotic metabolite +relationship: is_conjugate_base_of CHEBI:30746 ! benzoic acid + +[Term] +id: CHEBI:16180 +name: N-acylglycine +namespace: chebi_ontology +alt_id: CHEBI:12484 +alt_id: CHEBI:21660 +alt_id: CHEBI:7238 +def: "An N-acyl-amino acid in which amino acid specified is glycine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "102.019" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "102.06880" RELATED MASS [ChEBI] +synonym: "C3H4NO3R" RELATED FORMULA [ChEBI] +synonym: "N-Acylglycine" EXACT [KEGG_COMPOUND] +synonym: "OC(=O)CNC([*])=O" RELATED SMILES [ChEBI] +xref: KEGG:C02055 +xref: MetaCyc:CPD-426 +is_a: CHEBI:24373 ! glycine derivative +is_a: CHEBI:51569 ! N-acyl-amino acid +relationship: is_conjugate_acid_of CHEBI:57670 ! N-acylglycinate + +[Term] +id: CHEBI:16183 +name: methane +namespace: chebi_ontology +alt_id: CHEBI:14585 +alt_id: CHEBI:25220 +alt_id: CHEBI:6811 +def: "A one-carbon compound in which the carbon is attached by single bonds to four hydrogen atoms. It is a colourless, odourless, non-toxic but flammable gas (b.p. -161degreeC)." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "16.031" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "16.04246" RELATED MASS [ChEBI] +synonym: "[H]C([H])([H])[H]" RELATED SMILES [ChEBI] +synonym: "CH4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CH4" RELATED [IUPAC] +synonym: "InChI=1S/CH4/h1H4" RELATED InChI [ChEBI] +synonym: "marsh gas" RELATED [NIST_Chemistry_WebBook] +synonym: "metano" RELATED [ChEBI] +synonym: "Methan" RELATED [ChEBI] +synonym: "Methane" EXACT [KEGG_COMPOUND] +synonym: "methane" EXACT IUPAC_NAME [IUPAC] +synonym: "methane" EXACT [UniProt] +synonym: "methane" EXACT [ChEBI] +synonym: "methyl hydride" RELATED [ChemIDplus] +synonym: "tetrahydridocarbon" EXACT IUPAC_NAME [IUPAC] +synonym: "VNWKTOKETHGBQD-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1718732 "ChemIDplus" +xref: CAS:74-82-8 "KEGG COMPOUND" +xref: Gmelin:59 "Gmelin" +xref: HMDB:HMDB02714 +xref: KEGG:C01438 +xref: MetaCyc:CH4 +xref: Patent:FR994032 +xref: Patent:US2583090 +xref: PDBeChem:CH3 +xref: PMID:17791569 "Europe PMC" +xref: PMID:23104415 "Europe PMC" +xref: PMID:23353606 "Europe PMC" +xref: PMID:23376302 "Europe PMC" +xref: PMID:23397538 "Europe PMC" +xref: PMID:23718889 "Europe PMC" +xref: PMID:23739479 "Europe PMC" +xref: PMID:23742231 "Europe PMC" +xref: PMID:23756351 "Europe PMC" +xref: PMID:24132456 "Europe PMC" +xref: PMID:24161402 "Europe PMC" +xref: PMID:24259373 "Europe PMC" +xref: Reaxys:1718732 "Reaxys" +xref: UM-BBD_compID:c0095 "UM-BBD" +xref: Wikipedia:Methane +is_a: CHEBI:18310 ! alkane +is_a: CHEBI:37176 ! mononuclear parent hydride +is_a: CHEBI:64708 ! one-carbon compound +relationship: has_role CHEBI:35230 ! fossil fuel +relationship: has_role CHEBI:76413 ! greenhouse gas +relationship: has_role CHEBI:76969 ! bacterial metabolite +relationship: is_conjugate_acid_of CHEBI:29438 ! methanide + +[Term] +id: CHEBI:16189 +name: sulfate +namespace: chebi_ontology +alt_id: CHEBI:15135 +alt_id: CHEBI:45687 +alt_id: CHEBI:9335 +def: "A sulfur oxoanion obtained by deprotonation of both OH groups of sulfuric acid." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "95.952" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "96.06360" RELATED MASS [ChEBI] +synonym: "[O-]S([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "[SO4](2-)" RELATED [IUPAC] +synonym: "InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2" RELATED InChI [ChEBI] +synonym: "O4S" RELATED FORMULA [ChEBI] +synonym: "QAOWNCQODCNURD-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "SO4(2-)" RELATED [IUPAC] +synonym: "Sulfate" EXACT [KEGG_COMPOUND] +synonym: "sulfate" EXACT [UniProt] +synonym: "sulfate" EXACT IUPAC_NAME [IUPAC] +synonym: "Sulfate anion(2-)" RELATED [HMDB] +synonym: "Sulfate dianion" RELATED [HMDB] +synonym: "SULFATE ION" RELATED [PDBeChem] +synonym: "Sulfate(2-)" RELATED [HMDB] +synonym: "Sulfuric acid ion(2-)" RELATED [HMDB] +synonym: "sulphate" RELATED [ChEBI] +synonym: "sulphate ion" RELATED [ChEBI] +synonym: "tetraoxidosulfate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "tetraoxosulfate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "tetraoxosulfate(VI)" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:3648446 "Beilstein" +xref: CAS:14808-79-8 "ChemIDplus" +xref: Gmelin:2120 "Gmelin" +xref: HMDB:HMDB01448 +xref: KEGG:C00059 +xref: KEGG:D05963 +xref: MetaCyc:SULFATE +xref: PDBeChem:SO4 +xref: PMID:11200094 "Europe PMC" +xref: PMID:11452993 "Europe PMC" +xref: PMID:11581495 "Europe PMC" +xref: PMID:11798107 "Europe PMC" +xref: PMID:12166931 "Europe PMC" +xref: PMID:12668033 "Europe PMC" +xref: PMID:14597181 "Europe PMC" +xref: PMID:15093386 "Europe PMC" +xref: PMID:15984785 "Europe PMC" +xref: PMID:16186560 "Europe PMC" +xref: PMID:16345535 "Europe PMC" +xref: PMID:16347366 "Europe PMC" +xref: PMID:16348007 "Europe PMC" +xref: PMID:16483812 "Europe PMC" +xref: PMID:16534979 "Europe PMC" +xref: PMID:16656509 "Europe PMC" +xref: PMID:16742508 "Europe PMC" +xref: PMID:16742518 "Europe PMC" +xref: PMID:17120760 "Europe PMC" +xref: PMID:17420092 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:17709180 "Europe PMC" +xref: PMID:18398178 "Europe PMC" +xref: PMID:18815700 "Europe PMC" +xref: PMID:18846414 "Europe PMC" +xref: PMID:19047345 "Europe PMC" +xref: PMID:19244483 "Europe PMC" +xref: PMID:19544990 "Europe PMC" +xref: PMID:19628332 "Europe PMC" +xref: PMID:19812358 "Europe PMC" +xref: Reaxys:3648446 "Reaxys" +xref: Wikipedia:Sulfate +is_a: CHEBI:33482 ! sulfur oxoanion +is_a: CHEBI:48154 ! sulfur oxide +is_a: CHEBI:79388 ! divalent inorganic anion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:45696 ! hydrogensulfate + +[Term] +id: CHEBI:16199 +name: urea +namespace: chebi_ontology +alt_id: CHEBI:15292 +alt_id: CHEBI:27218 +alt_id: CHEBI:46379 +alt_id: CHEBI:9888 +def: "A carbonyl group with two C-bound amine groups." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "60.032" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "60.05534" RELATED MASS [ChEBI] +synonym: "Carbamide" RELATED [KEGG_COMPOUND] +synonym: "carbamide" RELATED INN [ChEBI] +synonym: "carbonyldiamide" RELATED [NIST_Chemistry_WebBook] +synonym: "CH4N2O" RELATED FORMULA [KEGG_COMPOUND] +synonym: "E927b" RELATED [ChEBI] +synonym: "H2NC(O)NH2" RELATED [ChEBI] +synonym: "Harnstoff" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/CH4N2O/c2-1(3)4/h(H4,2,3,4)" RELATED InChI [ChEBI] +synonym: "Karbamid" RELATED [ChEBI] +synonym: "NC(N)=O" RELATED SMILES [ChEBI] +synonym: "ur" RELATED [IUPAC] +synonym: "UREA" EXACT [PDBeChem] +synonym: "Urea" EXACT [KEGG_COMPOUND] +synonym: "urea" EXACT [UniProt] +synonym: "urea" EXACT IUPAC_NAME [IUPAC] +synonym: "uree" RELATED [ChEBI] +synonym: "XSQUKJJJFZCRTK-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:635724 "Beilstein" +xref: CAS:57-13-6 "KEGG COMPOUND" +xref: Drug_Central:4264 "DrugCentral" +xref: DrugBank:DB03904 +xref: ECMDB:ECMDB04172 +xref: Gmelin:1378 "Gmelin" +xref: HMDB:HMDB00294 +xref: KEGG:C00086 +xref: KEGG:D00023 +xref: KNApSAcK:C00007314 +xref: MetaCyc:UREA +xref: PDBeChem:URE +xref: PMID:18037357 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: Reaxys:635724 "Reaxys" +xref: UM-BBD_compID:c0165 "UM-BBD" +xref: Wikipedia:Urea +xref: YMDB:YMDB00003 +is_a: CHEBI:29347 ! monocarboxylic acid amide +is_a: CHEBI:64708 ! one-carbon compound +relationship: has_functional_parent CHEBI:28976 ! carbonic acid +relationship: has_role CHEBI:33287 ! fertilizer +relationship: has_role CHEBI:64577 ! flour treatment agent +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_tautomer_of CHEBI:48376 ! carbamimidic acid + +[Term] +id: CHEBI:16215 +name: phosphonate(2-) +namespace: chebi_ontology +alt_id: CHEBI:14820 +alt_id: CHEBI:39856 +alt_id: CHEBI:8154 +def: "A divalent inorganic anion obtained by removal of both protons from phosphonic acid" [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "79.966" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "79.97990" RELATED MASS [ChEBI] +synonym: "[H]P([O-])([O-])=O" RELATED SMILES [ChEBI] +synonym: "[PHO3](2-)" RELATED [IUPAC] +synonym: "ABLZXFCXXLZCGV-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "HO3P" RELATED FORMULA [ChEBI] +synonym: "hydridotrioxidophosphate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydridotrioxophosphate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H3O3P/c1-4(2)3/h4H,(H2,1,2,3)/p-2" RELATED InChI [ChEBI] +synonym: "PHO3(2-)" RELATED [IUPAC] +synonym: "PHOSPHONATE" RELATED [PDBeChem] +synonym: "Phosphonate" RELATED [KEGG_COMPOUND] +synonym: "phosphonate" RELATED [UniProt] +synonym: "phosphonate" RELATED [IUPAC] +xref: Gmelin:1618 "Gmelin" +xref: KEGG:C06701 +xref: MetaCyc:PHOSPHONATE +xref: PDBeChem:2PO +is_a: CHEBI:33461 ! phosphorus oxoanion +is_a: CHEBI:79388 ! divalent inorganic anion +relationship: is_conjugate_base_of CHEBI:33462 ! phosphonate(1-) + +[Term] +id: CHEBI:16221 +name: sn-glycerol 1-phosphate +namespace: chebi_ontology +alt_id: CHEBI:12844 +alt_id: CHEBI:26702 +alt_id: CHEBI:26703 +alt_id: CHEBI:39668 +alt_id: CHEBI:5450 +def: "An optically active glycerol 1-phosphate having (S)-configuration." [] +subset: 3_STAR +synonym: "(2S)-2,3-dihydroxypropyl dihydrogen phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "172.014" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "172.07372" RELATED MASS [ChEBI] +synonym: "AWUCVROLDVIAJX-VKHMYHEASA-N" RELATED InChIKey [ChEBI] +synonym: "C3H9O6P" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-(glycerol 3-phosphate)" RELATED [CBN] +synonym: "InChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/t3-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-(glycerol 1-phosphate)" RELATED [CBN] +synonym: "L-Glycerol 1-phosphate" RELATED [KEGG_COMPOUND] +synonym: "OC[C@H](O)COP(O)(O)=O" RELATED SMILES [ChEBI] +synonym: "sn-glycerol 1-(dihydrogen phosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "sn-Glycerol 1-phosphate" EXACT [KEGG_COMPOUND] +synonym: "SN-GLYCEROL-1-PHOSPHATE" RELATED [PDBeChem] +synonym: "sn-Gro-1-P" RELATED [KEGG_COMPOUND] +xref: Beilstein:1723976 "Beilstein" +xref: CAS:5746-57-6 "KEGG COMPOUND" +xref: KEGG:C00623 +xref: MetaCyc:SN-GLYCEROL-1-PHOSPHATE +xref: PDBeChem:1GP +xref: PMID:15066037 "Europe PMC" +xref: PMID:16428851 "Europe PMC" +xref: PMID:8586635 "Europe PMC" +xref: Reaxys:1723976 "Reaxys" +is_a: CHEBI:14336 ! glycerol 1-phosphate +is_a: CHEBI:37528 ! sn-glycerol 1-phosphates +relationship: has_role CHEBI:78947 ! archaeal metabolite +relationship: is_conjugate_acid_of CHEBI:57685 ! sn-glycerol 1-phosphate(2-) +relationship: is_enantiomer_of CHEBI:15978 ! sn-glycerol 3-phosphate + +[Term] +id: CHEBI:16235 +name: guanine +namespace: chebi_ontology +alt_id: CHEBI:14371 +alt_id: CHEBI:14372 +alt_id: CHEBI:24443 +alt_id: CHEBI:42948 +alt_id: CHEBI:5563 +def: "A 2-aminopurine carrying a 6-oxo substituent." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "151.049" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "151.126" RELATED MASS [ChEBI] +synonym: "2-amino-1,9-dihydro-6H-purin-6-one" EXACT IUPAC_NAME [IUPAC] +synonym: "2-Amino-6-hydroxypurine" RELATED [KEGG_COMPOUND] +synonym: "2-amino-6-oxopurine" RELATED [ChEBI] +synonym: "C12=C(N=C(NC1=O)N)NC=N2" RELATED SMILES [ChEBI] +synonym: "C5H5N5O" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C5H5N5O" RELATED FORMULA [ChEBI] +synonym: "G" RELATED [ChEBI] +synonym: "Gua" RELATED [CBN] +synonym: "GUANINE" EXACT [PDBeChem] +synonym: "Guanine" EXACT [KEGG_COMPOUND] +synonym: "guanine" EXACT [UniProt] +synonym: "InChI=1S/C5H5N5O/c6-5-9-3-2(4(11)10-5)7-1-8-3/h1H,(H4,6,7,8,9,10,11)" RELATED InChI [ChEBI] +synonym: "UYTPUPDQBNUYGX-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:147911 "Beilstein" +xref: CAS:73-40-5 "KEGG COMPOUND" +xref: DrugBank:DB02377 +xref: Gmelin:431879 "Gmelin" +xref: HMDB:HMDB00132 +xref: KEGG:C00242 +xref: KNApSAcK:C00001501 +xref: MetaCyc:GUANINE +xref: PDBeChem:GUN +xref: PMID:22770225 "Europe PMC" +xref: PMID:8070089 "Europe PMC" +xref: Reaxys:147911 "Reaxys" +xref: Wikipedia:Guanine +is_a: CHEBI:20702 ! 2-aminopurines +is_a: CHEBI:25810 ! oxopurine +is_a: CHEBI:26386 ! purine nucleobase +relationship: has_parent_hydride CHEBI:35589 ! 9H-purine +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:84735 ! algal metabolite + +[Term] +id: CHEBI:16236 +name: ethanol +namespace: chebi_ontology +alt_id: CHEBI:14222 +alt_id: CHEBI:23978 +alt_id: CHEBI:30878 +alt_id: CHEBI:30880 +alt_id: CHEBI:42377 +alt_id: CHEBI:44594 +alt_id: CHEBI:4879 +def: "A primary alcohol that is ethane in which one of the hydrogens is substituted by a hydroxy group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-hydroxyethane" RELATED [ChemIDplus] +synonym: "46.042" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "46.06844" RELATED MASS [ChEBI] +synonym: "[CH2Me(OH)]" RELATED [MolBase] +synonym: "[OEtH]" RELATED [MolBase] +synonym: "Aethanol" RELATED [ChemIDplus] +synonym: "Aethylalkohol" RELATED [ChemIDplus] +synonym: "alcohol" RELATED [NIST_Chemistry_WebBook] +synonym: "alcohol etilico" RELATED [ChEBI] +synonym: "alcool ethylique" RELATED [ChemIDplus] +synonym: "Alkohol" RELATED [ChemIDplus] +synonym: "C2H5OH" RELATED [ChEBI] +synonym: "C2H6O" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CCO" RELATED SMILES [ChEBI] +synonym: "Dehydrated ethanol" RELATED BRAND_NAME [KEGG_DRUG] +synonym: "etanol" RELATED [ChEBI] +synonym: "ETHANOL" EXACT [PDBeChem] +synonym: "Ethanol" EXACT [KEGG_COMPOUND] +synonym: "ethanol" EXACT IUPAC_NAME [IUPAC] +synonym: "ethanol" EXACT [UniProt] +synonym: "ethanol" EXACT [ChEBI] +synonym: "Ethyl alcohol" RELATED [KEGG_COMPOUND] +synonym: "EtOH" RELATED [ChemIDplus] +synonym: "hydroxyethane" RELATED [ChemIDplus] +synonym: "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3" RELATED InChI [ChEBI] +synonym: "LFQSCWFLJHTTHZ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Methylcarbinol" RELATED [KEGG_COMPOUND] +synonym: "spiritus vini" RELATED [ChEBI] +xref: Beilstein:1718733 "Beilstein" +xref: CAS:64-17-5 "NIST Chemistry WebBook" +xref: colombos:ETHANOL +xref: Drug_Central:1076 "DrugCentral" +xref: DrugBank:DB00898 +xref: Gmelin:787 "Gmelin" +xref: HMDB:HMDB00108 +xref: KEGG:C00469 +xref: KEGG:D00068 +xref: KEGG:D06542 +xref: KNApSAcK:C00019560 +xref: MetaCyc:ETOH +xref: MolBase:858 +xref: MolBase:859 +xref: PDBeChem:EOH +xref: PDBeChem:OHE +xref: PMID:11046114 "Europe PMC" +xref: PMID:11090978 "Europe PMC" +xref: PMID:11198720 "Europe PMC" +xref: PMID:11200745 "Europe PMC" +xref: PMID:11262320 "Europe PMC" +xref: PMID:11303910 "Europe PMC" +xref: PMID:11333032 "Europe PMC" +xref: PMID:11505026 "Europe PMC" +xref: PMID:11590970 "Europe PMC" +xref: PMID:11728426 "Europe PMC" +xref: PMID:11750186 "Europe PMC" +xref: PMID:11754521 "Europe PMC" +xref: PMID:11810019 "Europe PMC" +xref: PMID:11826039 "Europe PMC" +xref: PMID:11981228 "Europe PMC" +xref: PMID:12824058 "Europe PMC" +xref: PMID:12829422 "Europe PMC" +xref: PMID:12888778 "Europe PMC" +xref: PMID:12946583 "Europe PMC" +xref: PMID:14674846 "Europe PMC" +xref: PMID:15019421 "Europe PMC" +xref: PMID:15239123 "Europe PMC" +xref: PMID:15285839 "Europe PMC" +xref: PMID:15464411 "Europe PMC" +xref: PMID:15465973 "Europe PMC" +xref: PMID:15749123 "Europe PMC" +xref: PMID:15900217 "Europe PMC" +xref: PMID:15902919 "Europe PMC" +xref: PMID:16084479 "Europe PMC" +xref: PMID:16133132 "Europe PMC" +xref: PMID:16352430 "Europe PMC" +xref: PMID:16390872 "Europe PMC" +xref: PMID:16737463 "Europe PMC" +xref: PMID:16891664 "Europe PMC" +xref: PMID:16934862 "Europe PMC" +xref: PMID:17043811 "Europe PMC" +xref: PMID:17190852 "Europe PMC" +xref: PMID:17663926 "Europe PMC" +xref: PMID:17687877 "Europe PMC" +xref: PMID:18095657 "Europe PMC" +xref: PMID:18249266 "Europe PMC" +xref: PMID:18320157 "Europe PMC" +xref: PMID:18347649 "Europe PMC" +xref: PMID:18408978 "Europe PMC" +xref: PMID:18411066 "Europe PMC" +xref: PMID:18456322 "Europe PMC" +xref: PMID:18513832 "Europe PMC" +xref: PMID:18922656 "Europe PMC" +xref: PMID:18925476 "Europe PMC" +xref: PMID:19280886 "Europe PMC" +xref: PMID:19359288 "Europe PMC" +xref: PMID:19384566 "Europe PMC" +xref: PMID:19458312 "Europe PMC" +xref: PMID:19851413 "Europe PMC" +xref: PMID:19901811 "Europe PMC" +xref: PMID:21600756 "Europe PMC" +xref: PMID:21762181 "Europe PMC" +xref: PMID:21881875 "Europe PMC" +xref: PMID:21967628 "Europe PMC" +xref: PMID:22019193 "Europe PMC" +xref: PMID:22222864 "Europe PMC" +xref: PMID:22261437 "Europe PMC" +xref: PMID:22286266 "Europe PMC" +xref: PMID:22306018 "Europe PMC" +xref: PMID:22331491 "Europe PMC" +xref: PMID:22336593 "Europe PMC" +xref: Reaxys:1718733 "Reaxys" +xref: UM-BBD_compID:c0038 "ChEBI" +xref: Wikipedia:Ethanol +is_a: CHEBI:23982 ! ethanols +is_a: CHEBI:50584 ! alkyl alcohol +relationship: has_role CHEBI:35488 ! central nervous system depressant +relationship: has_role CHEBI:48218 ! antiseptic drug +relationship: has_role CHEBI:48219 ! disinfectant +relationship: has_role CHEBI:48354 ! polar solvent +relationship: has_role CHEBI:50905 ! teratogenic agent +relationship: has_role CHEBI:50910 ! neurotoxin +relationship: has_role CHEBI:60643 ! NMDA receptor antagonist +relationship: has_role CHEBI:64018 ! protein kinase C agonist +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:52092 ! ethoxide + +[Term] +id: CHEBI:16240 +name: hydrogen peroxide +namespace: chebi_ontology +alt_id: CHEBI:13354 +alt_id: CHEBI:13355 +alt_id: CHEBI:24637 +alt_id: CHEBI:44812 +alt_id: CHEBI:5586 +def: "An inorganic peroxide consisting of two hydroxy groups joined by a covalent oxygen-oxygen single bond." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "34.005" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "34.01468" RELATED MASS [ChEBI] +synonym: "[H]OO[H]" RELATED SMILES [ChEBI] +synonym: "[OH(OH)]" RELATED [MolBase] +synonym: "bis(hydridooxygen)(O--O)" EXACT IUPAC_NAME [IUPAC] +synonym: "dihydrogen dioxide" RELATED [IUPAC] +synonym: "dihydrogen peroxide" EXACT IUPAC_NAME [IUPAC] +synonym: "dihydrogen(peroxide)" EXACT IUPAC_NAME [IUPAC] +synonym: "dioxidane" EXACT IUPAC_NAME [IUPAC] +synonym: "H2O2" RELATED [UniProt] +synonym: "H2O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "H2O2" RELATED [KEGG_COMPOUND] +synonym: "HOOH" RELATED [IUPAC] +synonym: "HYDROGEN PEROXIDE" EXACT [PDBeChem] +synonym: "Hydrogen peroxide" EXACT [KEGG_COMPOUND] +synonym: "hydrogen peroxide" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H2O2/c1-2/h1-2H" RELATED InChI [ChEBI] +synonym: "MHAJPDPJQMAIIY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Oxydol" RELATED [KEGG_COMPOUND] +synonym: "perhydrol" RELATED [MetaCyc] +xref: Beilstein:3587191 "Beilstein" +xref: CAS:7722-84-1 "KEGG COMPOUND" +xref: colombos:H2O2 +xref: Drug_Central:3281 "DrugCentral" +xref: Gmelin:509 "Gmelin" +xref: HMDB:HMDB03125 +xref: KEGG:C00027 +xref: KEGG:D00008 +xref: MetaCyc:HYDROGEN-PEROXIDE +xref: MolBase:932 +xref: PDBeChem:PEO +xref: PMID:10455187 "Europe PMC" +xref: PMID:10557015 "Europe PMC" +xref: PMID:10849784 "Europe PMC" +xref: PMID:11033421 "Europe PMC" +xref: PMID:11105916 "Europe PMC" +xref: PMID:11318558 "Europe PMC" +xref: PMID:11387393 "Europe PMC" +xref: PMID:11809417 "Europe PMC" +xref: PMID:11864786 "Europe PMC" +xref: PMID:11893576 "Europe PMC" +xref: PMID:12867293 "Europe PMC" +xref: PMID:12934880 "Europe PMC" +xref: PMID:14679422 "Europe PMC" +xref: PMID:15028418 "Europe PMC" +xref: PMID:15133946 "Europe PMC" +xref: PMID:15298493 "Europe PMC" +xref: PMID:16337875 "Europe PMC" +xref: PMID:16463018 "Europe PMC" +xref: PMID:16864869 "Europe PMC" +xref: PMID:17020896 "Europe PMC" +xref: PMID:17179007 "Europe PMC" +xref: PMID:17610934 "Europe PMC" +xref: PMID:17948137 "Europe PMC" +xref: PMID:18179203 "Europe PMC" +xref: PMID:18182702 "Europe PMC" +xref: PMID:18306736 "Europe PMC" +xref: PMID:18443210 "Europe PMC" +xref: PMID:18592736 "Europe PMC" +xref: PMID:19107210 "Europe PMC" +xref: PMID:19229032 "Europe PMC" +xref: PMID:19297450 "Europe PMC" +xref: PMID:19509065 "Europe PMC" +xref: PMID:26352695 "Europe PMC" +xref: PMID:26365231 "Europe PMC" +xref: PMID:7548021 "Europe PMC" +xref: PMID:7581816 "Europe PMC" +xref: PMID:8048546 "Europe PMC" +xref: PMID:8375042 "Europe PMC" +xref: PMID:8451754 "Europe PMC" +xref: PMID:9051670 "Europe PMC" +xref: PMID:9100841 "Europe PMC" +xref: PMID:9168257 "Europe PMC" +xref: PMID:9202721 "Europe PMC" +xref: PMID:9558114 "Europe PMC" +xref: Reaxys:3587191 "Reaxys" +xref: Wikipedia:Hydrogen_peroxide +is_a: CHEBI:24837 ! inorganic peroxide +is_a: CHEBI:26523 ! reactive oxygen species +relationship: has_role CHEBI:132717 ! bleaching agent +relationship: has_role CHEBI:23357 ! cofactor +relationship: has_role CHEBI:48219 ! disinfectant +relationship: has_role CHEBI:50902 ! genotoxin +relationship: has_role CHEBI:50910 ! neurotoxin +relationship: has_role CHEBI:59163 ! biomarker +relationship: has_role CHEBI:63248 ! oxidising agent +relationship: has_role CHEBI:63490 ! explosive +relationship: has_role CHEBI:65259 ! GABA antagonist +relationship: has_role CHEBI:68495 ! apoptosis inducer +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76967 ! human xenobiotic metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:29192 ! hydrogenperoxide(1-) + +[Term] +id: CHEBI:16243 +name: quercetin +namespace: chebi_ontology +alt_id: CHEBI:11704 +alt_id: CHEBI:14991 +alt_id: CHEBI:26472 +alt_id: CHEBI:45280 +alt_id: CHEBI:8696 +def: "A pentahydroxyflavone having the five hydroxy groups placed at the 3-, 3'-, 4'-, 5- and 7-positions. It is one of the most abundant flavonoids in edible vegetables, fruit and wine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-4H-1-benzopyran-4-one" RELATED [ChEBI] +synonym: "2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-4H-chromen-4-one" EXACT IUPAC_NAME [IUPAC] +synonym: "3,3',4',5,7-pentahydroxyflavone" RELATED [ChEBI] +synonym: "3,5,7,3',4'-PENTAHYDROXYFLAVONE" RELATED [PDBeChem] +synonym: "3,5,7,3',4'-Pentahydroxyflavone" RELATED [KEGG_COMPOUND] +synonym: "302.043" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "302.23570" RELATED MASS [ChEBI] +synonym: "C15H10O7" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C15H10O7/c16-7-4-10(19)12-11(5-7)22-15(14(21)13(12)20)6-1-2-8(17)9(18)3-6/h1-5,16-19,21H" RELATED InChI [ChEBI] +synonym: "Oc1cc(O)c2c(c1)oc(-c1ccc(O)c(O)c1)c(O)c2=O" RELATED SMILES [ChEBI] +synonym: "Quercetin" EXACT [KEGG_COMPOUND] +synonym: "REFJWTPEDVJJIY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "sophoretin" RELATED [ChEBI] +synonym: "xanthaurine" RELATED [ChEBI] +xref: Beilstein:317313 "Beilstein" +xref: CAS:117-39-5 "ChemIDplus" +xref: Drug_Central:3514 "DrugCentral" +xref: DrugBank:DB04216 +xref: Gmelin:579210 "Gmelin" +xref: HMDB:HMDB05794 +xref: KEGG:C00389 +xref: KNApSAcK:C00004631 +xref: LINCS:LSM-4199 +xref: LIPID_MAPS_instance:LMPK12110004 "LIPID MAPS" +xref: MetaCyc:CPD-520 +xref: Patent:KR20120121684 +xref: Patent:US2013012577 +xref: PDBeChem:QUE +xref: PMID:16226777 "Europe PMC" +xref: PMID:17015250 "Europe PMC" +xref: PMID:17135030 "Europe PMC" +xref: PMID:17426744 "Europe PMC" +xref: PMID:18096136 "Europe PMC" +xref: PMID:18484521 "Europe PMC" +xref: PMID:18549926 "Europe PMC" +xref: PMID:18564899 "Europe PMC" +xref: PMID:18579649 "Europe PMC" +xref: PMID:18785622 "Europe PMC" +xref: PMID:19461927 "Europe PMC" +xref: PMID:22920589 "Europe PMC" +xref: PMID:23342112 "Europe PMC" +xref: PMID:23359794 "Europe PMC" +xref: PMID:27565033 "Europe PMC" +xref: PMID:27589790 "Europe PMC" +xref: PMID:27591927 "Europe PMC" +xref: PMID:27704720 "Europe PMC" +xref: Reaxys:317313 "Reaxys" +xref: Wikipedia:Quercetin +is_a: CHEBI:25883 ! pentahydroxyflavone +is_a: CHEBI:52267 ! 7-hydroxyflavonol +relationship: has_role CHEBI:33282 ! antibacterial agent +relationship: has_role CHEBI:35610 ! antineoplastic agent +relationship: has_role CHEBI:38161 ! chelator +relationship: has_role CHEBI:48578 ! radical scavenger +relationship: has_role CHEBI:70770 ! Aurora kinase inhibitor +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76989 ! phytoestrogen +relationship: has_role CHEBI:77020 ! EC 1.10.99.2 [ribosyldihydronicotinamide dehydrogenase (quinone)] inhibitor +relationship: is_conjugate_acid_of CHEBI:57694 ! quercetin-7-olate + +[Term] +id: CHEBI:16277 +name: haloacetic acid +namespace: chebi_ontology +alt_id: CHEBI:14385 +alt_id: CHEBI:24467 +alt_id: CHEBI:5608 +def: "A monocarboxylic acid that is acetic acid in which one of the methyl hydrogens has been replaced by a halogen atom." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "C2H3O2X" RELATED FORMULA [ChEBI] +synonym: "OC(=O)C*" RELATED SMILES [ChEBI] +xref: KEGG:C01812 +is_a: CHEBI:25384 ! monocarboxylic acid +is_a: CHEBI:36684 ! organohalogen compound +relationship: has_functional_parent CHEBI:15366 ! acetic acid +relationship: is_conjugate_acid_of CHEBI:85638 ! haloacetate(1-) + +[Term] +id: CHEBI:16284 +name: dATP +namespace: chebi_ontology +alt_id: CHEBI:10491 +alt_id: CHEBI:14069 +alt_id: CHEBI:19238 +alt_id: CHEBI:42290 +def: "A purine 2'-deoxyribonucleoside 5'-triphosphate having adenine as the nucleobase." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2'-deoxyadenosine 5'-(tetrahydrogen triphosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "2'-Deoxyadenosine 5'-triphosphate" RELATED [KEGG_COMPOUND] +synonym: "2'-deoxyadenosine 5'-triphosphate" RELATED [ChEBI] +synonym: "491.001" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "491.18160" RELATED MASS [ChEBI] +synonym: "C10H16N5O12P3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "dATP" EXACT [KEGG_COMPOUND] +synonym: "Deoxyadenosine 5'-triphosphate" RELATED [KEGG_COMPOUND] +synonym: "Deoxyadenosine triphosphate" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C10H16N5O12P3/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(16)6(25-7)2-24-29(20,21)27-30(22,23)26-28(17,18)19/h3-7,16H,1-2H2,(H,20,21)(H,22,23)(H2,11,12,13)(H2,17,18,19)/t5-,6+,7+/m0/s1" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@H]1C[C@H](O)[C@@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)O1" RELATED SMILES [ChEBI] +synonym: "SUYVUBYJARFZHO-RRKCRQDMSA-N" RELATED InChIKey [ChEBI] +xref: CAS:1927-31-7 "KEGG COMPOUND" +xref: DrugBank:DB03222 +xref: KEGG:C00131 +is_a: CHEBI:19237 ! 2'-deoxyadenosine 5'-phosphate +is_a: CHEBI:37042 ! purine 2'-deoxyribonucleoside 5'-triphosphate +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:495505 ! dATP(3-) + +[Term] +id: CHEBI:16296 +name: D-tryptophan +namespace: chebi_ontology +alt_id: CHEBI:13028 +alt_id: CHEBI:21110 +alt_id: CHEBI:42157 +alt_id: CHEBI:42206 +alt_id: CHEBI:42235 +alt_id: CHEBI:42297 +alt_id: CHEBI:4257 +def: "The D-enantiomer of tryptophan." [] +subset: 3_STAR +synonym: "(2R)-2-amino-3-(1H-indol-3-yl)propanoic acid" RELATED [IUPAC] +synonym: "(R)-tryptophan" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "204.090" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "204.22526" RELATED MASS [ChEBI] +synonym: "C11H12N2O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-TRYPTOPHAN" EXACT [PDBeChem] +synonym: "D-Tryptophan" EXACT [KEGG_COMPOUND] +synonym: "D-tryptophan" EXACT IUPAC_NAME [IUPAC] +synonym: "DTR" RELATED [PDBeChem] +synonym: "InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/t9-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H](Cc1c[nH]c2ccccc12)C(O)=O" RELATED SMILES [ChEBI] +synonym: "QIVBCDIJIAJPQS-SECBINFHSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:86198 "Beilstein" +xref: CAS:153-94-6 "KEGG COMPOUND" +xref: DrugBank:DB03225 +xref: Gmelin:83743 "Gmelin" +xref: HMDB:HMDB13609 +xref: KEGG:C00525 +xref: MetaCyc:D-TRYPTOPHAN +xref: PDBeChem:DTR +xref: PMID:21560237 "Europe PMC" +xref: PMID:22156410 "Europe PMC" +xref: PMID:22336999 "Europe PMC" +xref: PMID:24097941 "Europe PMC" +xref: Reaxys:86198 "Reaxys" +xref: YMDB:YMDB00998 +is_a: CHEBI:16733 ! D-alpha-amino acid +is_a: CHEBI:27897 ! tryptophan +relationship: has_role CHEBI:76969 ! bacterial metabolite +relationship: is_conjugate_acid_of CHEBI:32716 ! D-tryptophanate +relationship: is_conjugate_base_of CHEBI:32717 ! D-tryptophanium +relationship: is_enantiomer_of CHEBI:16828 ! L-tryptophan +relationship: is_tautomer_of CHEBI:57719 ! D-tryptophan zwitterion + +[Term] +id: CHEBI:16301 +name: nitrite +namespace: chebi_ontology +alt_id: CHEBI:14658 +alt_id: CHEBI:44396 +alt_id: CHEBI:7585 +def: "The nitrogen oxoanion formed by loss of a proton from nitrous acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "45.993" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "46.00554" RELATED MASS [ChEBI] +synonym: "[NO2](-)" RELATED [IUPAC] +synonym: "[O-]N=O" RELATED SMILES [ChEBI] +synonym: "dioxidonitrate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "dioxonitrate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "dioxonitrate(III)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/HNO2/c2-1-3/h(H,2,3)/p-1" RELATED InChI [ChEBI] +synonym: "IOVCWXUNBOPUCH-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "Nitrit" RELATED [ChEBI] +synonym: "Nitrite" EXACT [KEGG_COMPOUND] +synonym: "nitrite" EXACT [UniProt] +synonym: "nitrite" EXACT IUPAC_NAME [IUPAC] +synonym: "nitrite anion" RELATED [ChemIDplus] +synonym: "NITRITE ION" RELATED [PDBeChem] +synonym: "nitrite(1-)" RELATED [ChemIDplus] +synonym: "nitrous acid, ion(1-)" RELATED [ChemIDplus] +synonym: "NO2" RELATED [ChEBI] +synonym: "NO2" RELATED FORMULA [ChEBI] +synonym: "NO2(-)" RELATED [IUPAC] +xref: CAS:14797-65-0 "NIST Chemistry WebBook" +xref: colombos:NO2 +xref: Gmelin:977 "Gmelin" +xref: KEGG:C00088 +xref: PDBeChem:NO2 +xref: Wikipedia:Nitrite +is_a: CHEBI:33458 ! nitrogen oxoanion +is_a: CHEBI:62764 ! reactive nitrogen species +is_a: CHEBI:79389 ! monovalent inorganic anion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:25567 ! nitrous acid + +[Term] +id: CHEBI:16335 +name: adenosine +namespace: chebi_ontology +alt_id: CHEBI:13734 +alt_id: CHEBI:22237 +alt_id: CHEBI:2472 +alt_id: CHEBI:40558 +alt_id: CHEBI:40825 +alt_id: CHEBI:40906 +def: "A ribonucleoside composed of a molecule of adenine attached to a ribofuranose moiety via a beta-N(9)-glycosidic bond." [] +subset: 3_STAR +synonym: "(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol" RELATED [DrugBank] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "267.097" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "267.24152" RELATED MASS [ChEBI] +synonym: "6-Amino-9-beta-D-ribofuranosyl-9H-purine" RELATED [ChemIDplus] +synonym: "9-beta-D-Ribofuranosidoadenine" RELATED [ChemIDplus] +synonym: "9-beta-D-Ribofuranosyl-9H-purin-6-amine" RELATED [ChemIDplus] +synonym: "9-beta-D-ribofuranosyl-9H-purin-6-amine" RELATED [ChEBI] +synonym: "Ade-Rib" RELATED [CBN] +synonym: "Adenine Deoxyribonucleoside" RELATED [DrugBank] +synonym: "Adenocard" RELATED BRAND_NAME [DrugBank] +synonym: "Adenocor" RELATED BRAND_NAME [DrugBank] +synonym: "Adenoscan" RELATED BRAND_NAME [DrugBank] +synonym: "Adenosin" RELATED [ChEBI] +synonym: "ADENOSINE" EXACT [PDBeChem] +synonym: "Adenosine" EXACT [KEGG_COMPOUND] +synonym: "adenosine" EXACT IUPAC_NAME [IUPAC] +synonym: "adenosine" EXACT [UniProt] +synonym: "Adenyldeoxyriboside" RELATED [DrugBank] +synonym: "Ado" RELATED [CBN] +synonym: "beta-D-Adenosine" RELATED [ChemIDplus] +synonym: "C10H13N5O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Deoxyadenosine" RELATED [DrugBank] +synonym: "Desoxyadenosine" RELATED [DrugBank] +synonym: "InChI=1S/C10H13N5O4/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10/h2-4,6-7,10,16-18H,1H2,(H2,11,12,13)/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "OIRDTQYFTABQOQ-KQYNXXCUSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:93029 "Beilstein" +xref: CAS:58-61-7 "NIST Chemistry WebBook" +xref: Drug_Central:90 "DrugCentral" +xref: DrugBank:DB00640 +xref: ECMDB:ECMDB00050 +xref: Gmelin:53385 "Gmelin" +xref: HMDB:HMDB00050 +xref: KEGG:C00212 +xref: KEGG:D00045 +xref: KNApSAcK:C00007444 +xref: LINCS:LSM-28568 +xref: MetaCyc:ADENOSINE +xref: PDBeChem:ADN +xref: PMID:11213237 "Europe PMC" +xref: PMID:11820865 "Europe PMC" +xref: PMID:11978011 "Europe PMC" +xref: PMID:16183671 "Europe PMC" +xref: PMID:16917093 "Europe PMC" +xref: PMID:17190852 "Europe PMC" +xref: PMID:18000974 "Europe PMC" +xref: PMID:323854 "Europe PMC" +xref: Reaxys:93029 "Reaxys" +xref: Wikipedia:Adenosine +xref: YMDB:YMDB00058 +is_a: CHEBI:22260 ! adenosines +relationship: has_role CHEBI:35480 ! analgesic +relationship: has_role CHEBI:35620 ! vasodilator agent +relationship: has_role CHEBI:38070 ! anti-arrhythmia drug +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite + +[Term] +id: CHEBI:16359 +name: cholic acid +namespace: chebi_ontology +alt_id: CHEBI:1694 +alt_id: CHEBI:20223 +alt_id: CHEBI:23210 +alt_id: CHEBI:41494 +def: "A bile acid that is 5beta-cholan-24-oic acid bearing three alpha-hydroxy substituents at position 3, 7 and 12." [] +subset: 3_STAR +synonym: "(3alpha,5beta,7alpha,12alpha)-3,7,12-trihydroxycholan-24-oic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3alpha,7alpha,12alpha-trihydroxy-5beta-cholan-24-oic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "3alpha,7alpha,12alpha-Trihydroxy-5beta-cholanate" RELATED [KEGG_COMPOUND] +synonym: "3alpha,7alpha,12alpha-Trihydroxy-5beta-cholanic acid" RELATED [KEGG_COMPOUND] +synonym: "3alpha,7alpha,12alpha-trihydroxy-5beta-cholanic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "408.288" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "408.57140" RELATED MASS [ChEBI] +synonym: "[H][C@@]12C[C@H](O)CC[C@]1(C)[C@@]1([H])C[C@H](O)[C@]3(C)[C@]([H])(CC[C@@]3([H])[C@]1([H])[C@H](O)C2)[C@H](C)CCC(O)=O" RELATED SMILES [ChEBI] +synonym: "BHQCQFFYRZLCQQ-OELDTZBJSA-N" RELATED InChIKey [ChEBI] +synonym: "C24H40O5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CHOLIC ACID" EXACT [PDBeChem] +synonym: "Cholic acid" EXACT [KEGG_COMPOUND] +synonym: "Cholsaeure" RELATED [ChEBI] +synonym: "InChI=1S/C24H40O5/c1-13(4-7-21(28)29)16-5-6-17-22-18(12-20(27)24(16,17)3)23(2)9-8-15(25)10-14(23)11-19(22)26/h13-20,22,25-27H,4-12H2,1-3H3,(H,28,29)/t13-,14+,15-,16-,17+,18+,19-,20+,22+,23+,24-/m1/s1" RELATED InChI [ChEBI] +xref: Beilstein:2822009 "ChemIDplus" +xref: CAS:81-25-4 "ChemIDplus" +xref: colombos:CHOLIC_ACID +xref: Drug_Central:3096 "DrugCentral" +xref: DrugBank:DB02659 +xref: HMDB:HMDB00619 +xref: KEGG:C00695 +xref: LINCS:LSM-5541 +xref: LIPID_MAPS_instance:LMST04010001 "LIPID MAPS" +xref: MetaCyc:CHOLATE +xref: PDBeChem:CHD +xref: PMID:22770225 "Europe PMC" +xref: Reaxys:2822009 "Reaxys" +xref: Wikipedia:Cholic_Acid +is_a: CHEBI:131620 ! C24-steroid +is_a: CHEBI:27114 ! trihydroxy-5beta-cholanic acid +is_a: CHEBI:3098 ! bile acid +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:29747 ! cholate + +[Term] +id: CHEBI:16375 +name: D-cysteine +namespace: chebi_ontology +alt_id: CHEBI:12919 +alt_id: CHEBI:20921 +alt_id: CHEBI:4111 +alt_id: CHEBI:41887 +def: "An optically active form of cysteine having D-configuration." [] +subset: 3_STAR +synonym: "(2S)-2-amino-3-mercaptopropanoic acid" RELATED [JCBN] +synonym: "(2S)-2-amino-3-sulfanylpropanoic acid" RELATED [IUPAC] +synonym: "(S)-2-amino-3-mercaptopropanoic acid" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "121.020" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "121.15922" RELATED MASS [ChEBI] +synonym: "C3H7NO2S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-Amino-3-mercaptopropionic acid" RELATED [KEGG_COMPOUND] +synonym: "D-Cystein" RELATED [ChEBI] +synonym: "D-CYSTEINE" EXACT [PDBeChem] +synonym: "D-Cysteine" EXACT [KEGG_COMPOUND] +synonym: "D-cysteine" EXACT IUPAC_NAME [IUPAC] +synonym: "D-Zystein" RELATED [ChEBI] +synonym: "DCY" RELATED [PDBeChem] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H](CS)C(O)=O" RELATED SMILES [ChEBI] +synonym: "XUJNEKJLAYXESH-UWTATZPHSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1721407 "Beilstein" +xref: CAS:921-01-7 "KEGG COMPOUND" +xref: DrugBank:DB03201 +xref: ECMDB:ECMDB03417 +xref: Gmelin:363236 "Gmelin" +xref: HMDB:HMDB03417 +xref: KEGG:C00793 +xref: KNApSAcK:C00007323 +xref: PDBeChem:DCY +xref: PMID:13761469 "Europe PMC" +xref: PMID:23340406 "Europe PMC" +xref: PMID:24800864 "Europe PMC" +xref: Reaxys:1721407 "Reaxys" +xref: YMDB:YMDB00913 +is_a: CHEBI:15356 ! cysteine +is_a: CHEBI:16733 ! D-alpha-amino acid +relationship: is_conjugate_acid_of CHEBI:32449 ! D-cysteinate(1-) +relationship: is_conjugate_base_of CHEBI:32451 ! D-cysteinium +relationship: is_enantiomer_of CHEBI:17561 ! L-cysteine +relationship: is_tautomer_of CHEBI:35236 ! D-cysteine zwitterion + +[Term] +id: CHEBI:16381 +name: 2'-deoxyribonucleoside 5'-triphosphate +namespace: chebi_ontology +alt_id: CHEBI:14121 +alt_id: CHEBI:37072 +alt_id: CHEBI:4426 +subset: 1_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2'-deoxynucleoside 5'-(tetrahydrogen triphosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "2'-deoxyribonucleoside 5'-triphosphates" RELATED [ChEBI] +synonym: "356.954" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "357.06290" RELATED MASS [ChEBI] +synonym: "C5H12O12P3R" RELATED FORMULA [ChEBI] +synonym: "Deoxynucleoside triphosphate" RELATED [KEGG_COMPOUND] +synonym: "O[C@H]1C[C@H]([*])O[C@@H]1COP(O)(=O)OP(O)(=O)OP(O)(O)=O" RELATED SMILES [ChEBI] +xref: KEGG:C00677 +is_a: CHEBI:37016 ! 2'-deoxyribonucleoside 5'-phosphate +relationship: is_conjugate_acid_of CHEBI:61560 ! 2'-deoxyribonucleoside 5'-triphosphate(4-) + +[Term] +id: CHEBI:16398 +name: D-threonine +namespace: chebi_ontology +alt_id: CHEBI:13027 +alt_id: CHEBI:21107 +alt_id: CHEBI:42146 +alt_id: CHEBI:42196 +alt_id: CHEBI:42224 +alt_id: CHEBI:4254 +alt_id: CHEBI:45935 +alt_id: CHEBI:45990 +def: "An optically active form of threonine having D-configuration." [] +subset: 3_STAR +synonym: "(2R,3S)-2-amino-3-hydroxybutanoic acid" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "119.058" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "119.11920" RELATED MASS [ChEBI] +synonym: "AYFVYJQAPQTCCC-STHAYSLISA-N" RELATED InChIKey [ChEBI] +synonym: "C4H9NO3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C[C@H](O)[C@@H](N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "D-2-Amino-3-hydroxybutyric acid" RELATED [KEGG_COMPOUND] +synonym: "D-2-Amino-3-hydroxybutyric acid" RELATED [HMDB] +synonym: "D-Threonin" RELATED [ChEBI] +synonym: "D-THREONINE" EXACT [PDBeChem] +synonym: "D-Threonine" EXACT [KEGG_COMPOUND] +synonym: "D-threonine" EXACT IUPAC_NAME [IUPAC] +synonym: "DTH" RELATED [PDBeChem] +synonym: "InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/t2-,3+/m0/s1" RELATED InChI [ChEBI] +xref: Beilstein:1721643 "ChemIDplus" +xref: Beilstein:4656043 "Beilstein" +xref: CAS:632-20-2 "KEGG COMPOUND" +xref: DrugBank:DB03700 +xref: ECMDB:ECMDB21519 +xref: Gmelin:874136 "Gmelin" +xref: HMDB:HMDB13775 +xref: KEGG:C00820 +xref: PDBeChem:DTH +xref: PMID:15375647 "Europe PMC" +xref: PMID:17081141 "Europe PMC" +xref: PMID:22176976 "Europe PMC" +xref: Reaxys:1721643 "Reaxys" +xref: YMDB:YMDB00802 +is_a: CHEBI:16733 ! D-alpha-amino acid +is_a: CHEBI:26986 ! threonine +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: is_conjugate_acid_of CHEBI:32827 ! D-threoninate +relationship: is_conjugate_base_of CHEBI:32828 ! D-threoninium +relationship: is_enantiomer_of CHEBI:16857 ! L-threonine +relationship: is_tautomer_of CHEBI:57757 ! D-threonine zwitterion + +[Term] +id: CHEBI:16411 +name: indole-3-acetic acid +namespace: chebi_ontology +alt_id: CHEBI:24802 +alt_id: CHEBI:5905 +def: "A monocarboxylic acid that is acetic acid in which one of the methyl hydrogens has been replaced by a 1H-indol-3-yl group." [] +subset: 3_STAR +synonym: "(Indol-3-yl)acetate" RELATED [KEGG_COMPOUND] +synonym: "(indol-3-yl)acetic acid" RELATED [UniProt] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "175.063" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "175.18400" RELATED MASS [ChEBI] +synonym: "1H-indol-3-ylacetic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "2-(indol-3-yl)ethanoic acid" RELATED [ChEBI] +synonym: "3-Indolylessigsaeure" RELATED [ChEBI] +synonym: "C10H9NO2" RELATED FORMULA [ChEBI] +synonym: "heteroauxin" RELATED [NIST_Chemistry_WebBook] +synonym: "IAA" RELATED [NIST_Chemistry_WebBook] +synonym: "IAA" RELATED [KEGG_COMPOUND] +synonym: "IES" RELATED [ChEBI] +synonym: "InChI=1S/C10H9NO2/c12-10(13)5-7-6-11-9-4-2-1-3-8(7)9/h1-4,6,11H,5H2,(H,12,13)" RELATED InChI [ChEBI] +synonym: "Indole-3-acetic acid" EXACT [KEGG_COMPOUND] +synonym: "Indoleacetic acid" RELATED [KEGG_COMPOUND] +synonym: "OC(=O)Cc1c[nH]c2ccccc12" RELATED SMILES [ChEBI] +synonym: "SEOVTRFCIGRIMH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:143358 "Beilstein" +xref: CAS:87-51-4 "KEGG COMPOUND" +xref: colombos:IAA +xref: DrugBank:DB07950 +xref: Gmelin:143197 "Gmelin" +xref: HMDB:HMDB00197 +xref: KEGG:C00954 +xref: KNApSAcK:C00000100 +xref: PDBeChem:IAC +xref: PMID:13610897 "Europe PMC" +xref: PMID:23545355 "Europe PMC" +xref: PMID:24285754 "Europe PMC" +xref: Reaxys:143358 "Reaxys" +xref: Wikipedia:Indole-3-acetic_acid +is_a: CHEBI:24803 ! indole-3-acetic acids +is_a: CHEBI:25384 ! monocarboxylic acid +relationship: has_role CHEBI:22676 ! auxin +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:30854 ! indole-3-acetate + +[Term] +id: CHEBI:16449 +name: alanine +namespace: chebi_ontology +alt_id: CHEBI:13748 +alt_id: CHEBI:22277 +alt_id: CHEBI:2539 +def: "An alpha-amino acid that consists of propionic acid bearing an amino substituent at position 2." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-Aminopropanoic acid" RELATED [KEGG_COMPOUND] +synonym: "2-aminopropanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "2-Aminopropionic acid" RELATED [KEGG_COMPOUND] +synonym: "89.048" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "89.09322" RELATED MASS [ChEBI] +synonym: "A" RELATED [ChEBI] +synonym: "ALA" RELATED [ChEBI] +synonym: "Alanin" RELATED [ChEBI] +synonym: "alanina" RELATED [ChEBI] +synonym: "Alanine" EXACT [KEGG_COMPOUND] +synonym: "alanine" EXACT [UniProt] +synonym: "alanine" EXACT IUPAC_NAME [IUPAC] +synonym: "C3H7NO2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)" RELATED InChI [ChEBI] +synonym: "QNAYBMKLOCPYGJ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:635807 "Beilstein" +xref: CAS:302-72-7 "KEGG COMPOUND" +xref: colombos:ALANINE +xref: Drug_Central:4306 "DrugCentral" +xref: Gmelin:2449 "Gmelin" +xref: KEGG:C01401 +xref: PMID:17439666 "Europe PMC" +xref: PMID:22264337 "Europe PMC" +xref: Reaxys:635807 "Reaxys" +xref: Wikipedia:Alanine +is_a: CHEBI:33704 ! alpha-amino acid +relationship: has_functional_parent CHEBI:30768 ! propionic acid +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:32439 ! alaninate +relationship: is_conjugate_base_of CHEBI:32440 ! alaninium +relationship: is_tautomer_of CHEBI:66916 ! alanine zwitterion + +[Term] +id: CHEBI:16454 +name: pantothenate +namespace: chebi_ontology +alt_id: CHEBI:14739 +alt_id: CHEBI:25846 +def: "A monocarboxylic acid anion that is the conjugate base of pantothenic acid, obtained by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "218.103" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "218.22700" RELATED MASS [ChEBI] +synonym: "3-(2,4-dihydroxy-3,3-dimethylbutanamido)propanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "C9H16NO5" RELATED FORMULA [ChEBI] +synonym: "CC(C)(CO)C(O)C(=O)NCCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "GHOKWGTUZJEAQD-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C9H17NO5/c1-9(2,5-11)7(14)8(15)10-4-3-6(12)13/h7,11,14H,3-5H2,1-2H3,(H,10,15)(H,12,13)/p-1" RELATED InChI [ChEBI] +synonym: "N-(2,4-dihydroxy-3,3-dimethylbutanoyl)-beta-alaninate" RELATED [ChEBI] +synonym: "pantothenate" EXACT [UniProt] +xref: PMID:21463532 "Europe PMC" +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_base_of CHEBI:7916 ! pantothenic acid + +[Term] +id: CHEBI:16467 +name: L-arginine +namespace: chebi_ontology +alt_id: CHEBI:13077 +alt_id: CHEBI:21235 +alt_id: CHEBI:42927 +alt_id: CHEBI:6185 +def: "An L-alpha-amino acid that is the L-isomer of arginine." [] +subset: 3_STAR +synonym: "(2S)-2-amino-5-(carbamimidamido)pentanoic acid" RELATED [IUPAC] +synonym: "(2S)-2-amino-5-guanidinopentanoic acid" RELATED [JCBN] +synonym: "(S)-2-amino-5-guanidinopentanoic acid" RELATED [ChEBI] +synonym: "(S)-2-Amino-5-guanidinovaleric acid" RELATED [KEGG_COMPOUND] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "174.112" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "174.20100" RELATED MASS [ChEBI] +synonym: "Arg" RELATED [DrugBank] +synonym: "arginine" RELATED INN [KEGG_DRUG] +synonym: "C6H14N4O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/t4-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-(+)-arginine" RELATED [NIST_Chemistry_WebBook] +synonym: "L-Arg" RELATED [DrugBank] +synonym: "L-Arginin" RELATED [ChEBI] +synonym: "L-Arginine" EXACT [KEGG_COMPOUND] +synonym: "L-arginine" EXACT IUPAC_NAME [IUPAC] +synonym: "N[C@@H](CCCNC(N)=N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "ODKSFYDXXFIFQN-BYPYZUCNSA-N" RELATED InChIKey [ChEBI] +synonym: "R" RELATED [MetaCyc] +xref: Beilstein:1725413 "ChemIDplus" +xref: CAS:74-79-3 "ChemIDplus" +xref: Drug_Central:1549 "DrugCentral" +xref: DrugBank:DB00125 +xref: ECMDB:ECMDB00517 +xref: Gmelin:83283 "Gmelin" +xref: HMDB:HMDB00517 +xref: KEGG:C00062 +xref: KEGG:D02982 +xref: KNApSAcK:C00001340 +xref: MetaCyc:ARG +xref: PDBeChem:ARG +xref: PDBeChem:GND +xref: PMID:10848923 "Europe PMC" +xref: PMID:11139824 "Europe PMC" +xref: PMID:11300497 "Europe PMC" +xref: PMID:11898853 "Europe PMC" +xref: PMID:12812828 "Europe PMC" +xref: PMID:15016745 "Europe PMC" +xref: PMID:15465805 "Europe PMC" +xref: PMID:16056256 "Europe PMC" +xref: PMID:16416365 "Europe PMC" +xref: PMID:17168727 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:19030957 "Europe PMC" +xref: PMID:21600268 "Europe PMC" +xref: PMID:21814794 "Europe PMC" +xref: PMID:22179117 "Europe PMC" +xref: PMID:22243793 "Europe PMC" +xref: PMID:22251130 "Europe PMC" +xref: PMID:22361732 "Europe PMC" +xref: PMID:22425811 "Europe PMC" +xref: PMID:22428068 "Europe PMC" +xref: PMID:22439203 "Europe PMC" +xref: PMID:22553931 "Europe PMC" +xref: PMID:22619480 "Europe PMC" +xref: PMID:22626826 "Europe PMC" +xref: PMID:22652429 "Europe PMC" +xref: PMID:22667467 "Europe PMC" +xref: PMID:22709481 "Europe PMC" +xref: PMID:8070089 "Europe PMC" +xref: Reaxys:1725413 "Reaxys" +xref: Wikipedia:L-arginine +xref: YMDB:YMDB00592 +is_a: CHEBI:24318 ! glutamine family amino acid +is_a: CHEBI:29016 ! arginine +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: has_role CHEBI:59163 ! biomarker +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:32681 ! L-argininate +relationship: is_conjugate_base_of CHEBI:32682 ! L-argininium(1+) +relationship: is_enantiomer_of CHEBI:15816 ! D-arginine + +[Term] +id: CHEBI:16480 +name: nitric oxide +namespace: chebi_ontology +alt_id: CHEBI:14657 +alt_id: CHEBI:25546 +alt_id: CHEBI:44452 +alt_id: CHEBI:7583 +def: "A nitrogen oxide which is a free radical, each molecule of which consists of one nitrogen and one oxygen atom." [] +subset: 3_STAR +synonym: "(.)NO" RELATED [ChEBI] +synonym: "(NO)(.)" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "29.998" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "30.00614" RELATED MASS [ChEBI] +synonym: "[N]=O" RELATED SMILES [ChEBI] +synonym: "[NO]" RELATED [MolBase] +synonym: "EDRF" RELATED [ChEBI] +synonym: "endothelium-derived relaxing factor" RELATED [ChEBI] +synonym: "InChI=1S/NO/c1-2" RELATED InChI [ChEBI] +synonym: "mononitrogen monoxide" RELATED [ChemIDplus] +synonym: "monoxido de nitrogeno" RELATED [ChEBI] +synonym: "monoxyde d'azote" RELATED [ChEBI] +synonym: "MWUXSHHQAYIFBG-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Nitric oxide" EXACT [KEGG_COMPOUND] +synonym: "nitric oxide" EXACT [UniProt] +synonym: "nitrogen monooxide" RELATED [IUPAC] +synonym: "Nitrogen monoxide" RELATED [KEGG_COMPOUND] +synonym: "nitrogen monoxide" RELATED [IUPAC] +synonym: "nitrosyl" RELATED [IUPAC] +synonym: "NO" RELATED [KEGG_COMPOUND] +synonym: "NO" RELATED FORMULA [KEGG_COMPOUND] +synonym: "NO(.)" RELATED [IUPAC] +synonym: "oxido de nitrogeno(II)" RELATED [ChEBI] +synonym: "oxido nitrico" RELATED [ChEBI] +synonym: "oxidonitrogen(.)" EXACT IUPAC_NAME [IUPAC] +synonym: "oxoazanyl" EXACT IUPAC_NAME [IUPAC] +synonym: "oxyde azotique" RELATED [ChEBI] +synonym: "oxyde nitrique" RELATED [ChEBI] +synonym: "Stickstoff(II)-oxid" RELATED [ChEBI] +synonym: "Stickstoffmonoxid" RELATED [ChEBI] +xref: CAS:10102-43-9 "NIST Chemistry WebBook" +xref: DrugBank:DB00435 +xref: Gmelin:451 "Gmelin" +xref: KEGG:C00533 +xref: KEGG:D00074 +xref: MolBase:943 +xref: PDBeChem:NO +xref: Reaxys:3587257 "Reaxys" +xref: Wikipedia:Nitric_oxide +is_a: CHEBI:26523 ! reactive oxygen species +is_a: CHEBI:35196 ! nitrogen oxide +is_a: CHEBI:36871 ! inorganic radical +is_a: CHEBI:62764 ! reactive nitrogen species +relationship: has_role CHEBI:25512 ! neurotransmitter +relationship: has_role CHEBI:35523 ! bronchodilator agent +relationship: has_role CHEBI:35620 ! vasodilator agent +relationship: has_role CHEBI:48578 ! radical scavenger +relationship: has_role CHEBI:62488 ! signalling molecule +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:16498 +name: N-acylneuraminic acid +namespace: chebi_ontology +alt_id: CHEBI:12485 +alt_id: CHEBI:21664 +alt_id: CHEBI:7240 +def: "Any neuraminic acid carrying an N-acyl substituent." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "294.083" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "294.23530" RELATED MASS [ChEBI] +synonym: "5-alkanamido-3,5-dideoxy-D-glycero-D-galacto-non-2-ulopyranosonic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]1(OC(O)(C[C@H](O)[C@H]1NC([*])=O)C(O)=O)[C@H](O)[C@H](O)CO" RELATED SMILES [ChEBI] +synonym: "C10H16NO9R" RELATED FORMULA [ChEBI] +synonym: "N-Acylneuraminate" RELATED [KEGG_COMPOUND] +synonym: "N-acylneuraminic acids" RELATED [ChEBI] +xref: KEGG:C00591 +is_a: CHEBI:26667 ! sialic acid +relationship: is_conjugate_acid_of CHEBI:60073 ! N-acylneuraminate + +[Term] +id: CHEBI:16516 +name: 2'-deoxyribonucleoside triphosphate +namespace: chebi_ontology +alt_id: CHEBI:11397 +alt_id: CHEBI:19258 +alt_id: CHEBI:839 +subset: 3_STAR +synonym: "2'-Deoxyribonucleoside triphosphate" EXACT [KEGG_COMPOUND] +synonym: "2'-deoxyribonucleoside triphosphate" EXACT [UniProt] +synonym: "2'-deoxyribonucleoside triphosphates" RELATED [ChEBI] +synonym: "C5H12O12P3R" RELATED FORMULA [KEGG_COMPOUND] +xref: KEGG:C04283 +is_a: CHEBI:17326 ! nucleoside triphosphate + +[Term] +id: CHEBI:16523 +name: D-serine +namespace: chebi_ontology +alt_id: CHEBI:13019 +alt_id: CHEBI:143888 +alt_id: CHEBI:21090 +alt_id: CHEBI:42262 +alt_id: CHEBI:4245 +def: "The R-enantiomer of serine." [] +subset: 3_STAR +synonym: "(2R)-2-amino-3-hydroxypropanoic acid" RELATED [IUPAC] +synonym: "(R)-2-Amino-3-hydroxy-propionic acid" RELATED [ChEMBL] +synonym: "(R)-2-amino-3-hydroxypropanoic acid" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "105.043" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "105.09262" RELATED MASS [ChEBI] +synonym: "C3H7NO3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-Serin" RELATED [ChEBI] +synonym: "D-SERINE" EXACT [PDBeChem] +synonym: "D-Serine" EXACT [KEGG_COMPOUND] +synonym: "D-serine" EXACT IUPAC_NAME [IUPAC] +synonym: "DSN" RELATED [PDBeChem] +synonym: "InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "MTCFGRXMJLQNBG-UWTATZPHSA-N" RELATED InChIKey [ChEBI] +synonym: "N[C@H](CO)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:1721403 "Beilstein" +xref: CAS:312-84-5 "KEGG COMPOUND" +xref: DrugBank:DB03929 +xref: ECMDB:ECMDB03406 +xref: Gmelin:1041392 "Gmelin" +xref: HMDB:HMDB03406 +xref: KEGG:C00740 +xref: MetaCyc:D-SERINE +xref: PDBeChem:DSN +xref: PMID:11864625 "Europe PMC" +xref: PMID:12850593 "Europe PMC" +xref: PMID:19212759 "Europe PMC" +xref: PMID:19217074 "Europe PMC" +xref: PMID:21295046 "Europe PMC" +xref: PMID:21914633 "Europe PMC" +xref: PMID:21956571 "Europe PMC" +xref: PMID:22117694 "Europe PMC" +xref: PMID:22128843 "Europe PMC" +xref: PMID:22266400 "Europe PMC" +xref: PMID:22280157 "Europe PMC" +xref: PMID:22362148 "Europe PMC" +xref: PMID:22369458 "Europe PMC" +xref: PMID:22445805 "Europe PMC" +xref: PMID:22465696 "Europe PMC" +xref: PMID:22486999 "Europe PMC" +xref: Reaxys:1721403 "Reaxys" +xref: YMDB:YMDB00284 +is_a: CHEBI:16733 ! D-alpha-amino acid +is_a: CHEBI:17822 ! serine +relationship: has_role CHEBI:64571 ! NMDA receptor agonist +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:32840 ! D-serinate +relationship: is_conjugate_base_of CHEBI:32841 ! D-serinium +relationship: is_enantiomer_of CHEBI:17115 ! L-serine +relationship: is_tautomer_of CHEBI:35247 ! D-serine zwitterion + +[Term] +id: CHEBI:16526 +name: carbon dioxide +namespace: chebi_ontology +alt_id: CHEBI:13282 +alt_id: CHEBI:13283 +alt_id: CHEBI:13284 +alt_id: CHEBI:13285 +alt_id: CHEBI:23011 +alt_id: CHEBI:3283 +alt_id: CHEBI:48829 +def: "A one-carbon compound with formula CO2 in which the carbon is attached to each oxygen atom by a double bond. A colourless, odourless gas under normal conditions, it is produced during respiration by all animals, fungi and microorganisms that depend directly or indirectly on living or decaying plants for food." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "43.990" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "44.00950" RELATED MASS [ChEBI] +synonym: "[CO2]" RELATED [MolBase] +synonym: "CARBON DIOXIDE" EXACT [PDBeChem] +synonym: "Carbon dioxide" EXACT [KEGG_COMPOUND] +synonym: "carbon dioxide" EXACT IUPAC_NAME [IUPAC] +synonym: "carbonic anhydride" RELATED [UM-BBD] +synonym: "CO2" RELATED [UniProt] +synonym: "CO2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CO2" RELATED [KEGG_COMPOUND] +synonym: "CURLTUGMZLYLDI-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "dioxidocarbon" EXACT IUPAC_NAME [IUPAC] +synonym: "E 290" RELATED [ChEBI] +synonym: "E-290" RELATED [ChEBI] +synonym: "E290" RELATED [ChEBI] +synonym: "InChI=1S/CO2/c2-1-3" RELATED InChI [ChEBI] +synonym: "O=C=O" RELATED SMILES [ChEBI] +synonym: "R-744" RELATED [ChEBI] +xref: Beilstein:1900390 "Beilstein" +xref: CAS:124-38-9 "KEGG COMPOUND" +xref: colombos:CO2 +xref: Drug_Central:4256 "DrugCentral" +xref: Gmelin:989 "Gmelin" +xref: HMDB:HMDB01967 +xref: KEGG:C00011 +xref: KEGG:D00004 +xref: MetaCyc:CARBON-DIOXIDE +xref: MolBase:752 +xref: PDBeChem:CO2 +xref: PMID:10826146 "Europe PMC" +xref: PMID:11094503 "Europe PMC" +xref: PMID:11584085 "Europe PMC" +xref: PMID:11802652 "Europe PMC" +xref: PMID:14639145 "Europe PMC" +xref: PMID:15050588 "Europe PMC" +xref: PMID:16591971 "Europe PMC" +xref: PMID:16656478 "Europe PMC" +xref: PMID:16659660 "Europe PMC" +xref: PMID:17190796 "Europe PMC" +xref: PMID:17448243 "Europe PMC" +xref: PMID:17878298 "Europe PMC" +xref: PMID:17884085 "Europe PMC" +xref: PMID:19043767 "Europe PMC" +xref: PMID:19259576 "Europe PMC" +xref: PMID:19854893 "Europe PMC" +xref: PMID:23384758 "Europe PMC" +xref: PMID:23828359 "Europe PMC" +xref: PMID:24258718 "Europe PMC" +xref: PMID:8482095 "Europe PMC" +xref: PMID:8818713 "Europe PMC" +xref: PMID:8869828 "Europe PMC" +xref: PMID:9611769 "Europe PMC" +xref: PMID:9730350 "Europe PMC" +xref: Reaxys:1900390 "Reaxys" +xref: UM-BBD_compID:c0131 "UM-BBD" +xref: Wikipedia:Carbon_dioxide +is_a: CHEBI:23014 ! carbon oxide +is_a: CHEBI:64708 ! one-carbon compound +relationship: has_role CHEBI:35620 ! vasodilator agent +relationship: has_role CHEBI:38867 ! anaesthetic +relationship: has_role CHEBI:46787 ! solvent +relationship: has_role CHEBI:48706 ! antagonist +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76413 ! greenhouse gas +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:77974 ! food packaging gas +relationship: has_role CHEBI:78017 ! food propellant +relationship: has_role CHEBI:78433 ! refrigerant + +[Term] +id: CHEBI:16537 +name: galactarate(2-) +namespace: chebi_ontology +alt_id: CHEBI:12929 +alt_id: CHEBI:14285 +alt_id: CHEBI:20944 +alt_id: CHEBI:24135 +def: "A dicarboxylic acid dianion that is the conjugate base of galactarate(1-)." [] +subset: 3_STAR +synonym: "(2R,3S,4R,5S)-2,3,4,5-tetrahydroxyhexanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "208.022" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "208.12292" RELATED MASS [ChEBI] +synonym: "C6H8O8" RELATED FORMULA [ChEBI] +synonym: "DSLZVSRJTYRBFB-DUHBMQHGSA-L" RELATED InChIKey [ChEBI] +synonym: "galactarate" RELATED [UniProt] +synonym: "InChI=1S/C6H10O8/c7-1(3(9)5(11)12)2(8)4(10)6(13)14/h1-4,7-10H,(H,11,12)(H,13,14)/p-2/t1-,2+,3+,4-" RELATED InChI [ChEBI] +synonym: "meso-galactarate" EXACT IUPAC_NAME [IUPAC] +synonym: "O[C@@H]([C@@H](O)[C@H](O)C([O-])=O)[C@@H](O)C([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:3909240 "Beilstein" +xref: Gmelin:1065131 "Gmelin" +xref: MetaCyc:D-GALACTARATE +xref: Reaxys:3909240 "Reaxys" +is_a: CHEBI:28965 ! dicarboxylic acid dianion +is_a: CHEBI:48871 ! galactaric acid anion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:35390 ! galactarate(1-) + +[Term] +id: CHEBI:16551 +name: alpha,alpha-trehalose +namespace: chebi_ontology +alt_id: CHEBI:10202 +alt_id: CHEBI:12281 +alt_id: CHEBI:12284 +alt_id: CHEBI:12287 +alt_id: CHEBI:15251 +alt_id: CHEBI:22365 +alt_id: CHEBI:46211 +def: "A trehalose in which both glucose residues have alpha-configuration at the anomeric carbon." [] +subset: 3_STAR +synonym: "(Glc)2" RELATED [KEGG_GLYCAN] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "342.116" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "342.29648" RELATED MASS [ChEBI] +synonym: "alpha,alpha'-Trehalose" RELATED [KEGG_COMPOUND] +synonym: "alpha,alpha-Trehalose" EXACT [KEGG_COMPOUND] +synonym: "alpha,alpha-trehalose" EXACT [UniProt] +synonym: "alpha-D-Glcp-(1<->1)-alpha-D-Glcp" RELATED [JCBN] +synonym: "alpha-D-glucopyranosyl alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "alpha-D-glucopyranosyl-alpha-D-glucopyranoside" RELATED [NIST_Chemistry_WebBook] +synonym: "alpha-D-Trehalose" RELATED [NIST_Chemistry_WebBook] +synonym: "alpha-trehalose" RELATED [NIST_Chemistry_WebBook] +synonym: "C12H22O11" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-(+)-trehalose" RELATED [NIST_Chemistry_WebBook] +synonym: "ergot sugar" RELATED [NIST_Chemistry_WebBook] +synonym: "HDTRYLNUVZCQOY-LIZSDCNHSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C12H22O11/c13-1-3-5(15)7(17)9(19)11(21-3)23-12-10(20)8(18)6(16)4(2-14)22-12/h3-20H,1-2H2/t3-,4-,5-,6-,7+,8+,9-,10-,11-,12-/m1/s1" RELATED InChI [ChEBI] +synonym: "mycose" RELATED [NIST_Chemistry_WebBook] +synonym: "OC[C@H]1O[C@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "TREHALOSE" RELATED [PDBeChem] +synonym: "Trehalose" RELATED [KEGG_COMPOUND] +xref: Beilstein:1292766 "Beilstein" +xref: CAS:99-20-7 "NIST Chemistry WebBook" +xref: Gmelin:2145829 "Gmelin" +xref: HMDB:HMDB00975 +xref: KEGG:C01083 +xref: KEGG:G00293 +xref: KNApSAcK:C00001152 +xref: LINCS:LSM-37121 +xref: MetaCyc:TREHALOSE +xref: PDBeChem:TRE +xref: PMID:17439666 "Europe PMC" +xref: Reaxys:1292766 "Reaxys" +xref: Wikipedia:Trehalose +is_a: CHEBI:27082 ! trehalose +is_a: CHEBI:27084 ! trehalose phosphate +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:16567 +name: anthranilate +namespace: chebi_ontology +alt_id: CHEBI:13841 +alt_id: CHEBI:22575 +def: "An aminobenzoate that is the conjugate base of anthranilic acid, obtained by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "136.040" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "136.12808" RELATED MASS [ChEBI] +synonym: "2-aminobenzoate" EXACT IUPAC_NAME [IUPAC] +synonym: "anthranilate" EXACT [UniProt] +synonym: "C7H6NO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C7H7NO2/c8-6-4-2-1-3-5(6)7(9)10/h1-4H,8H2,(H,9,10)/p-1" RELATED InChI [ChEBI] +synonym: "Nc1ccccc1C([O-])=O" RELATED SMILES [ChEBI] +synonym: "RWZYAGGXGHYGMB-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3904977 "Beilstein" +xref: Gmelin:131077 "Gmelin" +xref: HMDB:HMDB01123 +xref: KEGG:C00108 "ChEBI" +xref: MetaCyc:ANTHRANILATE +xref: Reaxys:3904977 "Reaxys" +xref: UM-BBD_compID:c0345 "ChEBI" +is_a: CHEBI:22494 ! aminobenzoate +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:30754 ! anthranilic acid + +[Term] +id: CHEBI:16610 +name: spermidine +namespace: chebi_ontology +alt_id: CHEBI:15095 +alt_id: CHEBI:15097 +alt_id: CHEBI:26732 +alt_id: CHEBI:26733 +alt_id: CHEBI:45647 +alt_id: CHEBI:9218 +def: "A triamine that is the 1,5,10-triaza derivative of decane." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,5,10-triazadecane" RELATED [ChemIDplus] +synonym: "145.158" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "145.24598" RELATED MASS [ChEBI] +synonym: "4-azaoctamethylenediamine" RELATED [ChemIDplus] +synonym: "4-azaoctane-1,8-diamine" RELATED [IUBMB] +synonym: "ATHGHQPFGPMSJY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "C7H19N3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C7H19N3/c8-4-1-2-6-10-7-3-5-9/h10H,1-9H2" RELATED InChI [ChEBI] +synonym: "N-(3-Aminopropyl)-1,4-butane-diamine" RELATED [KEGG_COMPOUND] +synonym: "N-(3-aminopropyl)butane-1,4-diamine" EXACT IUPAC_NAME [IUPAC] +synonym: "NCCCCNCCCN" RELATED SMILES [ChEBI] +synonym: "Spermidin" RELATED [ChEBI] +synonym: "SPERMIDINE" EXACT [PDBeChem] +synonym: "Spermidine" EXACT [KEGG_COMPOUND] +xref: Beilstein:1698591 "ChemIDplus" +xref: CAS:124-20-9 "KEGG COMPOUND" +xref: DrugBank:DB03566 +xref: Gmelin:454510 "Gmelin" +xref: HMDB:HMDB01257 +xref: KEGG:C00315 +xref: KNApSAcK:C00001431 +xref: LINCS:LSM-37075 +xref: MetaCyc:SPERMIDINE +xref: PDBeChem:SPD +xref: PMID:22770225 "Europe PMC" +xref: Reaxys:1698591 "Reaxys" +xref: Wikipedia:Spermidine +is_a: CHEBI:38751 ! triamine +is_a: CHEBI:39474 ! polyazaalkane +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:57834 ! spermidine(3+) + +[Term] +id: CHEBI:16643 +name: L-methionine +namespace: chebi_ontology +alt_id: CHEBI:13141 +alt_id: CHEBI:21360 +alt_id: CHEBI:43990 +alt_id: CHEBI:6271 +def: "The L-enantiomer of methionine." [] +subset: 3_STAR +synonym: "(2S)-2-amino-4-(methylsulfanyl)butanoic acid" RELATED [IUPAC] +synonym: "(S)-2-amino-4-(methylthio)butanoic acid" RELATED [ChemIDplus] +synonym: "(S)-2-amino-4-(methylthio)butyric acid" RELATED [ChemIDplus] +synonym: "(S)-methionine" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "149.051" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "149.21238" RELATED MASS [ChEBI] +synonym: "C5H11NO2S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CSCC[C@H](N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "FFEARJCKVFRZRR-BYPYZUCNSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/t4-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-(-)-methionine" RELATED [NIST_Chemistry_WebBook] +synonym: "L-alpha-amino-gamma-methylmercaptobutyric acid" RELATED [NIST_Chemistry_WebBook] +synonym: "L-Methionin" RELATED [ChEBI] +synonym: "L-Methionine" EXACT [KEGG_COMPOUND] +synonym: "L-methionine" EXACT IUPAC_NAME [IUPAC] +synonym: "M" RELATED [ChEBI] +synonym: "Met" RELATED [ChEBI] +synonym: "METHIONINE" RELATED [PDBeChem] +synonym: "Methionine" RELATED [KEGG_COMPOUND] +synonym: "Methionine" RELATED [KEGG_DRUG] +xref: CAS:63-68-3 "KEGG COMPOUND" +xref: Drug_Central:3347 "DrugCentral" +xref: DrugBank:DB00134 +xref: ECMDB:ECMDB00696 +xref: Gmelin:26935 "Gmelin" +xref: HMDB:HMDB00696 +xref: KEGG:C00073 +xref: KEGG:D00019 +xref: KNApSAcK:C00001379 +xref: MetaCyc:MET +xref: PDBeChem:MET_LFOH +xref: PMID:16575097 "Europe PMC" +xref: PMID:21683740 "Europe PMC" +xref: PMID:21946918 "Europe PMC" +xref: PMID:22200379 "Europe PMC" +xref: PMID:22370952 "Europe PMC" +xref: PMID:22448874 "Europe PMC" +xref: PMID:22517898 "Europe PMC" +xref: PMID:24126240 "Europe PMC" +xref: PMID:24939187 "Europe PMC" +xref: PMID:5764336 "Europe PMC" +xref: Reaxys:1722294 "Reaxys" +xref: YMDB:YMDB00318 +is_a: CHEBI:16811 ! methionine +is_a: CHEBI:22658 ! aspartate family amino acid +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: has_role CHEBI:74529 ! antidote to paracetamol poisoning +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:32631 ! L-methioninate +relationship: is_conjugate_base_of CHEBI:32632 ! L-methioninium +relationship: is_enantiomer_of CHEBI:16867 ! D-methionine +relationship: is_tautomer_of CHEBI:57844 ! L-methionine zwitterion + +[Term] +id: CHEBI:16646 +name: carbohydrate +namespace: chebi_ontology +alt_id: CHEBI:15131 +alt_id: CHEBI:23008 +alt_id: CHEBI:9318 +def: "Any member of the class of organooxygen compounds that is a polyhydroxy-aldehyde or -ketone or a lactol resulting from their intramolecular condensation (monosaccharides); substances derived from these by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom; and polymeric products arising by intermolecular acetal formation between two or more such molecules (disaccharides, polysaccharides and oligosaccharides). Carbohydrates contain only carbon, hydrogen and oxygen atoms; prior to any oxidation or reduction, most have the empirical formula Cm(H2O)n. Compounds obtained from carbohydrates by substitution, etc., are known as carbohydrate derivatives and may contain other elements. Cyclitols are generally not regarded as carbohydrates." [] +subset: 3_STAR +synonym: "carbohidrato" RELATED [IUPAC] +synonym: "carbohidratos" RELATED [IUPAC] +synonym: "carbohydrate" EXACT IUPAC_NAME [IUPAC] +synonym: "carbohydrates" EXACT IUPAC_NAME [IUPAC] +synonym: "glucide" RELATED [ChEBI] +synonym: "glucides" RELATED [ChEBI] +synonym: "glucido" RELATED [ChEBI] +synonym: "glucidos" RELATED [ChEBI] +synonym: "hydrates de carbone" RELATED [ChEBI] +synonym: "Kohlenhydrat" RELATED [ChEBI] +synonym: "Kohlenhydrate" RELATED [ChEBI] +synonym: "saccharide" RELATED [IUPAC] +synonym: "saccharides" RELATED [IUPAC] +synonym: "saccharidum" RELATED [ChEBI] +xref: Wikipedia:Carbohydrate +is_a: CHEBI:78616 ! carbohydrates and carbohydrate derivatives +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:16647 +name: L-fuculose 1-phosphate +namespace: chebi_ontology +alt_id: CHEBI:13104 +alt_id: CHEBI:13105 +alt_id: CHEBI:21296 +def: "The 1-O-phospho derivative of L-fuculose." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "244.035" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "244.13638" RELATED MASS [ChEBI] +synonym: "6-deoxy-1-O-phosphono-L-tagatose" RELATED [IUPAC] +synonym: "6-deoxy-L-lyxo-hex-2-ulose 1-(dihydrogen phosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "6-deoxy-L-tagatose 1-(dihydrogen phosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H13O8P" RELATED FORMULA [ChEBI] +synonym: "C[C@H](O)[C@@H](O)[C@@H](O)C(=O)COP(O)(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C6H13O8P/c1-3(7)5(9)6(10)4(8)2-14-15(11,12)13/h3,5-7,9-10H,2H2,1H3,(H2,11,12,13)/t3-,5+,6-/m0/s1" RELATED InChI [ChEBI] +synonym: "KNYGWWDTPGSEPD-LFRDXLMFSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1881578 "Beilstein" +xref: KEGG:C01099 +xref: KNApSAcK:C00019651 +is_a: CHEBI:24964 ! deoxyketohexose phosphate +relationship: has_functional_parent CHEBI:17617 ! L-fuculose +relationship: is_conjugate_acid_of CHEBI:57846 ! L-fuculose 1-phosphate(2-) + +[Term] +id: CHEBI:16651 +name: (S)-lactate +namespace: chebi_ontology +alt_id: CHEBI:11065 +alt_id: CHEBI:12411 +alt_id: CHEBI:18783 +def: "An optically active form of lactate having (S)-configuration." [] +subset: 3_STAR +synonym: "(+)-lactate" RELATED [ChEBI] +synonym: "(2S)-2-hydroxypropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "(S)-lactate" EXACT [UniProt] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "89.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "89.07000" RELATED MASS [ChEBI] +synonym: "C3H5O3" RELATED FORMULA [ChEBI] +synonym: "C[C@H](O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H6O3/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6)/p-1/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "JVTAAEKCZFNVCJ-REOHCLBHSA-M" RELATED InChIKey [ChEBI] +synonym: "L(+)-lactate" RELATED [ChEBI] +synonym: "L-(+)-lactate" RELATED [ChEBI] +synonym: "L-lactate" RELATED [UM-BBD] +xref: Beilstein:4655977 "Beilstein" +xref: Gmelin:324523 "Gmelin" +xref: KEGG:C00186 "ChEBI" +xref: MetaCyc:L-LACTATE +xref: Reaxys:4655977 "Reaxys" +xref: UM-BBD_compID:c0152 "ChEBI" +is_a: CHEBI:24996 ! lactate +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: is_conjugate_base_of CHEBI:422 ! (S)-lactic acid +relationship: is_enantiomer_of CHEBI:16004 ! (R)-lactate + +[Term] +id: CHEBI:16659 +name: D-glycerate +namespace: chebi_ontology +alt_id: CHEBI:10999 +alt_id: CHEBI:12985 +alt_id: CHEBI:21027 +def: "A glycerate that is the conjugate base of D-glyceric acid, obtained by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "(2R)-2,3-dihydroxypropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "(R)-glycerate" RELATED [HMDB] +synonym: "(R)-glycerate anion" RELATED [ChEBI] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "105.019" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "105.06940" RELATED MASS [ChEBI] +synonym: "alpha,beta-Hydroxypropionate" RELATED [HMDB] +synonym: "C3H5O4" RELATED FORMULA [ChEBI] +synonym: "D-glycerate" EXACT [UniProt] +synonym: "InChI=1S/C3H6O4/c4-1-2(5)3(6)7/h2,4-5H,1H2,(H,6,7)/p-1/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "OC[C@@H](O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "RBNPOMFGQQGHHO-UWTATZPHSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:6114954 "Beilstein" +xref: Gmelin:1146853 "Gmelin" +xref: HMDB:HMDB00139 +xref: KEGG:C00258 "ChEBI" +xref: MetaCyc:GLYCERATE +xref: Reaxys:6114954 "Reaxys" +is_a: CHEBI:33871 ! glycerate +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_base_of CHEBI:32398 ! D-glyceric acid + +[Term] +id: CHEBI:16670 +name: peptide +namespace: chebi_ontology +alt_id: CHEBI:14753 +alt_id: CHEBI:25906 +alt_id: CHEBI:7990 +def: "Amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another with formal loss of water. The term is usually applied to structures formed from alpha-amino acids, but it includes those derived from any amino carboxylic acid. X = OH, OR, NH2, NHR, etc." [] +subset: 3_STAR +synonym: "(C2H2NOR)nC2H3NOR" RELATED FORMULA [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "Peptid" RELATED [ChEBI] +synonym: "Peptide" EXACT [KEGG_COMPOUND] +synonym: "peptides" EXACT IUPAC_NAME [IUPAC] +synonym: "peptido" RELATED [ChEBI] +synonym: "peptidos" RELATED [ChEBI] +xref: KEGG:C00012 +is_a: CHEBI:37622 ! carboxamide +is_a: CHEBI:50047 ! organic amino compound +relationship: has_part CHEBI:33708 ! amino-acid residue +relationship: is_tautomer_of CHEBI:60466 ! peptide zwitterion + +[Term] +id: CHEBI:16695 +name: UMP +namespace: chebi_ontology +alt_id: CHEBI:13508 +alt_id: CHEBI:13509 +alt_id: CHEBI:27231 +alt_id: CHEBI:46362 +alt_id: CHEBI:46382 +alt_id: CHEBI:47721 +alt_id: CHEBI:9849 +def: "A pyrimidine ribonucleoside 5'-monophosphate having uracil as the nucleobase." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "324.036" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "324.18136" RELATED MASS [ChEBI] +synonym: "5'-UMP" RELATED [ChemIDplus] +synonym: "5'-uridylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "5'Uridylic acid" RELATED [KEGG_COMPOUND] +synonym: "C9H13N2O9P" RELATED FORMULA [KEGG_COMPOUND] +synonym: "DJJCXFVJDGTHFX-XVFCMESISA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C9H13N2O9P/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" RELATED InChI [ChEBI] +synonym: "O[C@@H]1[C@@H](COP(O)(O)=O)O[C@H]([C@@H]1O)n1ccc(=O)[nH]c1=O" RELATED SMILES [ChEBI] +synonym: "pU" RELATED [CBN] +synonym: "pU" RELATED [ChEBI] +synonym: "UMP" EXACT [KEGG_COMPOUND] +synonym: "uridine 5'-(dihydrogen phosphate)" RELATED [ChemIDplus] +synonym: "Uridine 5'-monophosphate" RELATED [KEGG_COMPOUND] +synonym: "uridine 5'-phosphate" RELATED [ChemIDplus] +synonym: "uridine 5'-phosphoric acid" RELATED [ChemIDplus] +synonym: "Uridine monophosphate" RELATED [KEGG_COMPOUND] +synonym: "URIDINE-5'-MONOPHOSPHATE" RELATED [PDBeChem] +synonym: "uridylate" RELATED [ChEBI] +synonym: "Uridylic acid" RELATED [KEGG_COMPOUND] +xref: Beilstein:47486 "Beilstein" +xref: CAS:58-97-9 "ChemIDplus" +xref: DrugBank:DB03685 +xref: Gmelin:310455 "Gmelin" +xref: HMDB:HMDB00288 +xref: KEGG:C00105 +xref: KNApSAcK:C00007311 +xref: MetaCyc:UMP +xref: PDBeChem:U5PrF10 +xref: PDBeChem:UrF10 +xref: PMID:22735334 "Europe PMC" +xref: PMID:2559771 "Europe PMC" +xref: Reaxys:47486 "Reaxys" +xref: Wikipedia:Uridine_monophosphate +is_a: CHEBI:27232 ! uridine 5'-phosphate +is_a: CHEBI:39457 ! pyrimidine ribonucleoside 5'-monophosphate +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:57865 ! UMP(2-) + +[Term] +id: CHEBI:16701 +name: nucleoside 5'-phosphate +namespace: chebi_ontology +alt_id: CHEBI:14674 +alt_id: CHEBI:25603 +alt_id: CHEBI:7650 +def: "A ribosyl or deoxyribosyl derivative of a pyrimidine or purine base in which C-5 of the ribose ring is mono-, di-, tri- or tetra-phosphorylated." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "196.014" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "196.09510" RELATED MASS [ChEBI] +synonym: "C5H9O6PR2" RELATED FORMULA [ChEBI] +synonym: "Nucleoside 5'-phosphate" EXACT [KEGG_COMPOUND] +synonym: "nucleoside 5'-phosphates" RELATED [ChEBI] +synonym: "O[C@H]1[C@@H]([*])[C@H]([*])O[C@@H]1COP(O)(O)=O" RELATED SMILES [ChEBI] +xref: KEGG:C01117 +is_a: CHEBI:29075 ! mononucleotide +relationship: is_conjugate_acid_of CHEBI:57867 ! nucleoside 5'-phosphate dianion + +[Term] +id: CHEBI:16705 +name: 6-aminopenicillanic acid +namespace: chebi_ontology +alt_id: CHEBI:20705 +alt_id: CHEBI:2172 +def: "A penicillanic acid compound having a (6R)-amino substituent. The active nucleus common to all penicillins, it may be substituted at the 6-amino position to form the semisynthetic penicillins, resulting in a variety of antibacterial and pharmacologic characteristics." [] +subset: 3_STAR +synonym: "(+)-6-aminopenicillanic acid" RELATED [ChEBI] +synonym: "(2S,5R,6R)-6-amino-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "216.057" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "216.25856" RELATED MASS [ChEBI] +synonym: "6-amino-2,2-dimethylpenam-3alpha-carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "6-Aminopenicillamine acid" RELATED [ChemIDplus] +synonym: "6-Aminopenicillanate" RELATED [KEGG_COMPOUND] +synonym: "6-Aminopenicillanic acid" EXACT [KEGG_COMPOUND] +synonym: "6-APA" RELATED [ChEBI] +synonym: "6-Apa" RELATED [ChemIDplus] +synonym: "6-Aps" RELATED [ChemIDplus] +synonym: "6beta-aminopenicillanic acid" RELATED [ChEBI] +synonym: "[H][C@]12SC(C)(C)[C@@H](N1C(=O)[C@H]2N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "Aminopenicillanic acid" RELATED [ChemIDplus] +synonym: "C8H12N2O3S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C8H12N2O3S/c1-8(2)4(7(12)13)10-5(11)3(9)6(10)14-8/h3-4,6H,9H2,1-2H3,(H,12,13)/t3-,4+,6-/m1/s1" RELATED InChI [ChEBI] +synonym: "NGHVIOIJCVXTGV-ALEPSDHESA-N" RELATED InChIKey [ChEBI] +synonym: "Penicin" RELATED [ChemIDplus] +synonym: "Penin" RELATED [ChemIDplus] +synonym: "Phenacyl 6-aminopenicillinate" RELATED [ChemIDplus] +xref: Beilstein:15080 "Beilstein" +xref: Beilstein:959078 "Beilstein" +xref: CAS:551-16-6 "KEGG COMPOUND" +xref: Gmelin:1876702 "Gmelin" +xref: KEGG:C02954 +xref: Patent:US2941995 +xref: PDBeChem:X1E +xref: PMID:12569987 "Europe PMC" +xref: PMID:1384868 "Europe PMC" +xref: PMID:14687482 "Europe PMC" +xref: PMID:1701026 "Europe PMC" +xref: PMID:20970923 "Europe PMC" +xref: PMID:21614893 "Europe PMC" +xref: PMID:24293403 "Europe PMC" +xref: PMID:24389703 "Europe PMC" +xref: PMID:24631718 "Europe PMC" +xref: PMID:25057428 "Europe PMC" +xref: PMID:26852849 "Europe PMC" +xref: PMID:26986755 "Europe PMC" +xref: PMID:6166603 "Europe PMC" +xref: Reaxys:15080 "Reaxys" +xref: Wikipedia:6-APA +is_a: CHEBI:25865 ! penicillanic acids +relationship: has_functional_parent CHEBI:37806 ! penicillanic acid +relationship: is_conjugate_base_of CHEBI:30938 ! 6-aminopenicillanate +relationship: is_tautomer_of CHEBI:57869 ! 6-aminopenicillanic acid zwitterion + +[Term] +id: CHEBI:16708 +name: adenine +namespace: chebi_ontology +alt_id: CHEBI:13733 +alt_id: CHEBI:22236 +alt_id: CHEBI:2470 +alt_id: CHEBI:40579 +def: "The parent compound of the 6-aminopurines, composed of a purine having an amino group at C-6." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "135.054" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "135.12690" RELATED MASS [ChEBI] +synonym: "6-Aminopurine" RELATED [KEGG_COMPOUND] +synonym: "9H-purin-6-amine" EXACT IUPAC_NAME [IUPAC] +synonym: "A" RELATED [ChEBI] +synonym: "Ade" RELATED [CBN] +synonym: "Adenin" RELATED [NIST_Chemistry_WebBook] +synonym: "ADENINE" EXACT [PDBeChem] +synonym: "Adenine" EXACT [KEGG_COMPOUND] +synonym: "adenine" EXACT [UniProt] +synonym: "C5H5N5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "GFFGJBXGBJISGV-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10)" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2[nH]cnc12" RELATED SMILES [ChEBI] +xref: Beilstein:608603 "Beilstein" +xref: CAS:73-24-5 "ChemIDplus" +xref: colombos:ADENINE +xref: Drug_Central:89 "DrugCentral" +xref: DrugBank:DB00173 +xref: Gmelin:3903 "Gmelin" +xref: HMDB:HMDB00034 +xref: KEGG:C00147 +xref: KEGG:D00034 +xref: KNApSAcK:C00001490 +xref: MetaCyc:ADENINE +xref: PDBeChem:ADE +xref: PMID:17439666 "Europe PMC" +xref: PMID:8070089 "Europe PMC" +xref: Reaxys:608603 "Reaxys" +xref: Wikipedia:Adenine +is_a: CHEBI:20706 ! 6-aminopurines +is_a: CHEBI:26386 ! purine nucleobase +relationship: has_parent_hydride CHEBI:35589 ! 9H-purine +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite + +[Term] +id: CHEBI:16716 +name: benzene +namespace: chebi_ontology +alt_id: CHEBI:13876 +alt_id: CHEBI:22703 +alt_id: CHEBI:3025 +alt_id: CHEBI:41187 +def: "A six-carbon aromatic annulene in which each carbon atom donates one of its two 2p electrons into a delocalised pi system. A toxic, flammable liquid byproduct of coal distillation, it is used as an industrial solvent. Benzene is a carcinogen that also damages bone marrow and the central nervous system." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "78.047" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "78.11184" RELATED MASS [ChEBI] +synonym: "[6]annulene" RELATED [NIST_Chemistry_WebBook] +synonym: "Benzen" RELATED [IUPAC] +synonym: "BENZENE" EXACT [PDBeChem] +synonym: "Benzene" EXACT [KEGG_COMPOUND] +synonym: "benzene" EXACT IUPAC_NAME [IUPAC] +synonym: "benzene" EXACT [UniProt] +synonym: "benzene" EXACT [ChEBI] +synonym: "Benzine" RELATED [UM-BBD] +synonym: "Benzol" RELATED [ChemIDplus] +synonym: "benzole" RELATED [NIST_Chemistry_WebBook] +synonym: "Bicarburet of hydrogen" RELATED [ChemIDplus] +synonym: "c1ccccc1" RELATED SMILES [ChEBI] +synonym: "C6H6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Coal naphtha" RELATED [ChemIDplus] +synonym: "cyclohexatriene" RELATED [UM-BBD] +synonym: "InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H" RELATED InChI [ChEBI] +synonym: "Mineral naphtha" RELATED [ChemIDplus] +synonym: "Phene" RELATED [ChemIDplus] +synonym: "phenyl hydride" RELATED [UM-BBD] +synonym: "Pyrobenzol" RELATED [ChemIDplus] +synonym: "Pyrobenzole" RELATED [ChemIDplus] +synonym: "UHOVQNZJYSORNB-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:969212 "Beilstein" +xref: CAS:71-43-2 "KEGG COMPOUND" +xref: Gmelin:1671 "Gmelin" +xref: HMDB:HMDB01505 +xref: KEGG:C01407 +xref: PDBeChem:BNZ +xref: PMID:11684179 "Europe PMC" +xref: PMID:11993966 "Europe PMC" +xref: PMID:12857942 "Europe PMC" +xref: PMID:14677922 "Europe PMC" +xref: PMID:15468289 "Europe PMC" +xref: PMID:15935818 "Europe PMC" +xref: PMID:16161967 "Europe PMC" +xref: PMID:17373369 "Europe PMC" +xref: PMID:18072742 "Europe PMC" +xref: PMID:18407866 "Europe PMC" +xref: PMID:18409691 "Europe PMC" +xref: PMID:18836923 "Europe PMC" +xref: PMID:19228219 "Europe PMC" +xref: PMID:21325737 "Europe PMC" +xref: PMID:23088855 "Europe PMC" +xref: PMID:23222815 "Europe PMC" +xref: PMID:23534829 "Europe PMC" +xref: PMID:6353911 "Europe PMC" +xref: PMID:8124204 "Europe PMC" +xref: Reaxys:969212 "Reaxys" +xref: UM-BBD_compID:c0142 "UM-BBD" +xref: Wikipedia:Benzene +is_a: CHEBI:134179 ! volatile organic compound +is_a: CHEBI:22712 ! benzenes +is_a: CHEBI:33842 ! aromatic annulene +relationship: has_role CHEBI:48355 ! non-polar solvent +relationship: has_role CHEBI:50903 ! carcinogenic agent +relationship: has_role CHEBI:78298 ! environmental contaminant + +[Term] +id: CHEBI:16733 +name: D-alpha-amino acid +namespace: chebi_ontology +alt_id: CHEBI:12909 +alt_id: CHEBI:13625 +alt_id: CHEBI:20906 +alt_id: CHEBI:4097 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "74.024" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "74.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "74.05870" RELATED MASS [ChEBI] +synonym: "C2H4NO2R" RELATED FORMULA [ChEBI] +synonym: "C2H4NO2R" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-alpha-amino acid" EXACT [ChEBI] +synonym: "D-alpha-amino acids" EXACT IUPAC_NAME [IUPAC] +synonym: "D-alpha-amino acids" RELATED [ChEBI] +synonym: "D-Amino acid" RELATED [KEGG_COMPOUND] +synonym: "N[C@H]([*])C(O)=O" RELATED SMILES [ChEBI] +xref: KEGG:C00405 +is_a: CHEBI:83925 ! non-proteinogenic alpha-amino acid +relationship: is_conjugate_acid_of CHEBI:60895 ! D-alpha-amino acid anion +relationship: is_tautomer_of CHEBI:59871 ! D-alpha-amino acid zwitterion + +[Term] +id: CHEBI:16755 +name: chenodeoxycholic acid +namespace: chebi_ontology +alt_id: CHEBI:23094 +alt_id: CHEBI:3588 +alt_id: CHEBI:3593 +def: "A dihydroxy-5beta-cholanic acid that is (5beta)-cholan-24-oic acid substituted by hydroxy groups at positions 3 and 7 respectively." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "392.293" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "392.57200" RELATED MASS [ChEBI] +synonym: "3alpha,7alpha-dihydroxy-5beta-cholan-24-oic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "3alpha,7alpha-Dihydroxy-5beta-cholanic acid" RELATED [KEGG_COMPOUND] +synonym: "7alpha-hydroxylithocholic acid" RELATED [ChemIDplus] +synonym: "[H][C@@]12C[C@H](O)CC[C@]1(C)[C@@]1([H])CC[C@]3(C)[C@]([H])(CC[C@@]3([H])[C@]1([H])[C@H](O)C2)[C@H](C)CCC(O)=O" RELATED SMILES [ChEBI] +synonym: "anthropodeoxycholic acid" RELATED [ChemIDplus] +synonym: "anthropodesoxycholic acid" RELATED [ChemIDplus] +synonym: "C24H40O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CDCA" RELATED [IUPHAR] +synonym: "chenic acid" RELATED [ChemIDplus] +synonym: "Chenix" RELATED [ChemIDplus] +synonym: "Chenodeoxycholic acid" EXACT [KEGG_COMPOUND] +synonym: "Chenodiol" RELATED [KEGG_COMPOUND] +synonym: "gallodesoxycholic acid" RELATED [ChemIDplus] +synonym: "InChI=1S/C24H40O4/c1-14(4-7-21(27)28)17-5-6-18-22-19(9-11-24(17,18)3)23(2)10-8-16(25)12-15(23)13-20(22)26/h14-20,22,25-26H,4-13H2,1-3H3,(H,27,28)/t14-,15+,16-,17-,18+,19+,20-,22+,23+,24-/m1/s1" RELATED InChI [ChEBI] +synonym: "RUDATBOHQWOJDD-BSWAIDMHSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:3219887 "Beilstein" +xref: CAS:474-25-9 "KEGG COMPOUND" +xref: Drug_Central:4361 "DrugCentral" +xref: DrugBank:DB06777 +xref: HMDB:HMDB00518 +xref: KEGG:C02528 +xref: KEGG:D00163 +xref: LINCS:LSM-5353 +xref: LIPID_MAPS_instance:LMST04010032 "LIPID MAPS" +xref: PDBeChem:JN3 +xref: PMID:11530998 "Europe PMC" +xref: PMID:16037564 "Europe PMC" +xref: PMID:24448653 "Europe PMC" +xref: PMID:24464484 "Europe PMC" +xref: Reaxys:3219887 "Reaxys" +xref: Wikipedia:Chenodiol +is_a: CHEBI:131620 ! C24-steroid +is_a: CHEBI:23775 ! dihydroxy-5beta-cholanic acid +is_a: CHEBI:3098 ! bile acid +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:36234 ! chenodeoxycholate + +[Term] +id: CHEBI:16761 +name: ADP +namespace: chebi_ontology +alt_id: CHEBI:13222 +alt_id: CHEBI:22244 +alt_id: CHEBI:2342 +alt_id: CHEBI:40553 +def: "A purine ribonucleoside 5'-diphosphate having adenine as the nucleobase." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "427.029" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "427.20110" RELATED MASS [ChEBI] +synonym: "5'-adenylphosphoric acid" RELATED [ChemIDplus] +synonym: "adenosine 5'-(trihydrogen diphosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "Adenosine 5'-diphosphate" RELATED [KEGG_COMPOUND] +synonym: "ADENOSINE-5'-DIPHOSPHATE" RELATED [PDBeChem] +synonym: "ADP" EXACT [KEGG_COMPOUND] +synonym: "C10H15N5O10P2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "H3adp" RELATED [IUPAC] +synonym: "InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "XTWYTFMLZFPYCI-KQYNXXCUSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:67722 "Beilstein" +xref: CAS:20398-34-9 "KEGG COMPOUND" +xref: CAS:58-64-0 "KEGG COMPOUND" +xref: COMe:MOL000173 +xref: DrugBank:DB03431 +xref: Gmelin:88452 "Gmelin" +xref: KEGG:C00008 +xref: KEGG:G11113 +xref: KNApSAcK:C00019353 +xref: PDBeChem:ADP +xref: PMID:16295522 "Europe PMC" +xref: Reaxys:67722 "Reaxys" +is_a: CHEBI:37038 ! purine ribonucleoside 5'-diphosphate +is_a: CHEBI:37096 ! adenosine 5'-phosphate +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:456216 ! ADP(3-) +relationship: is_conjugate_acid_of CHEBI:87518 ! ADP(2-) + +[Term] +id: CHEBI:16793 +name: mercury(2+) +namespace: chebi_ontology +alt_id: CHEBI:13370 +alt_id: CHEBI:25199 +alt_id: CHEBI:25200 +alt_id: CHEBI:49640 +alt_id: CHEBI:5714 +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "200.59000" RELATED MASS [ChEBI] +synonym: "201.971" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "[Hg++]" RELATED SMILES [ChEBI] +synonym: "BQPIGGFYSBELGY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Hg" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Hg(2+)" RELATED [UniProt] +synonym: "Hg(2+)" RELATED [IUPAC] +synonym: "Hg2+" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/Hg/q+2" RELATED InChI [ChEBI] +synonym: "Mercuric ion" RELATED [KEGG_COMPOUND] +synonym: "mercuric ion" RELATED [ChEBI] +synonym: "MERCURY (II) ION" RELATED [PDBeChem] +synonym: "mercury(2+)" EXACT IUPAC_NAME [IUPAC] +synonym: "mercury(2+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "mercury(2+) ion" RELATED [ChEBI] +synonym: "mercury(II)" RELATED [ChEBI] +synonym: "mercury(II) cation" EXACT IUPAC_NAME [IUPAC] +synonym: "mercury(II) cation" RELATED [ChEBI] +xref: KEGG:C00703 +xref: PDBeChem:HG +xref: UM-BBD_compID:c0096 "ChEBI" +is_a: CHEBI:25197 ! mercury cation +is_a: CHEBI:30412 ! monoatomic dication +is_a: CHEBI:60240 ! divalent metal cation +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite + +[Term] +id: CHEBI:16811 +name: methionine +namespace: chebi_ontology +alt_id: CHEBI:14590 +alt_id: CHEBI:25229 +alt_id: CHEBI:6829 +def: "A sulfur-containing amino acid that is butyric acid bearing an amino substituent at position 2 and a methylthio substituent at position 4." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "149.051" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "149.21238" RELATED MASS [ChEBI] +synonym: "2-amino-4-(methylsulfanyl)butanoic acid" RELATED [IUPAC] +synonym: "2-amino-4-(methylthio)butanoic acid" RELATED [JCBN] +synonym: "2-Amino-4-(methylthio)butyric acid" RELATED [KEGG_COMPOUND] +synonym: "alpha-amino-gamma-methylmercaptobutyric acid" RELATED [NIST_Chemistry_WebBook] +synonym: "C5H11NO2S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CSCCC(N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "DL-Methionine" RELATED [KEGG_DRUG] +synonym: "FFEARJCKVFRZRR-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Hmet" RELATED [IUPAC] +synonym: "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)" RELATED InChI [ChEBI] +synonym: "M" RELATED [ChEBI] +synonym: "Met" RELATED [ChEBI] +synonym: "Methionin" RELATED [ChEBI] +synonym: "Methionine" EXACT [KEGG_COMPOUND] +synonym: "methionine" EXACT IUPAC_NAME [IUPAC] +synonym: "methionine" EXACT [ChEBI] +synonym: "metionina" RELATED [ChEBI] +synonym: "Racemethionine" RELATED [KEGG_DRUG] +xref: Beilstein:636185 "Beilstein" +xref: CAS:59-51-8 "KEGG COMPOUND" +xref: colombos:METHIONINE +xref: Gmelin:3117 "Gmelin" +xref: KEGG:C01733 +xref: KEGG:D04983 +xref: PMID:16702333 "Europe PMC" +xref: PMID:22264337 "Europe PMC" +xref: PMID:2543976 "Europe PMC" +xref: Reaxys:636185 "Reaxys" +xref: UM-BBD_compID:c0094 "UM-BBD" +xref: Wikipedia:Methionine +is_a: CHEBI:26834 ! sulfur-containing amino acid +is_a: CHEBI:33704 ! alpha-amino acid +relationship: has_functional_parent CHEBI:30772 ! butyric acid +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_acid_of CHEBI:32644 ! methioninate +relationship: is_conjugate_base_of CHEBI:32646 ! methioninium +relationship: is_tautomer_of CHEBI:64558 ! methionine zwitterion + +[Term] +id: CHEBI:16828 +name: L-tryptophan +namespace: chebi_ontology +alt_id: CHEBI:13178 +alt_id: CHEBI:184633 +alt_id: CHEBI:21407 +alt_id: CHEBI:45988 +alt_id: CHEBI:46086 +alt_id: CHEBI:46125 +alt_id: CHEBI:46225 +alt_id: CHEBI:6310 +def: "The L-enantiomer of tryptophan." [] +subset: 3_STAR +synonym: "(2S)-2-amino-3-(1H-indol-3-yl)propanoic acid" RELATED [IUPAC] +synonym: "(S)-alpha-amino-1H-indole-3-propanoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "(S)-alpha-Amino-beta-(3-indolyl)-propionic acid" RELATED [KEGG_COMPOUND] +synonym: "(S)-tryptophan" RELATED [NIST_Chemistry_WebBook] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "204.090" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "204.22526" RELATED MASS [ChEBI] +synonym: "C11H12N2O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/t9-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-(-)-tryptophan" RELATED [NIST_Chemistry_WebBook] +synonym: "L-beta-3-indolylalanine" RELATED [NIST_Chemistry_WebBook] +synonym: "L-Tryptophan" EXACT [KEGG_COMPOUND] +synonym: "L-tryptophan" EXACT IUPAC_NAME [IUPAC] +synonym: "L-tryptophan" EXACT [ChEBI] +synonym: "N[C@@H](Cc1c[nH]c2ccccc12)C(O)=O" RELATED SMILES [ChEBI] +synonym: "QIVBCDIJIAJPQS-VIFPVBQESA-N" RELATED InChIKey [ChEBI] +synonym: "Trp" RELATED [ChEBI] +synonym: "TRYPTOPHAN" RELATED [PDBeChem] +synonym: "Tryptophan" RELATED [KEGG_COMPOUND] +synonym: "tryptophan" RELATED INN [KEGG_DRUG] +synonym: "W" RELATED [ChEBI] +xref: Beilstein:86197 "Beilstein" +xref: CAS:73-22-3 "KEGG COMPOUND" +xref: Drug_Central:2780 "DrugCentral" +xref: DrugBank:DB00150 +xref: ECMDB:ECMDB00929 +xref: Gmelin:51434 "Gmelin" +xref: HMDB:HMDB00929 +xref: KEGG:C00078 +xref: KEGG:D00020 +xref: KNApSAcK:C00001396 +xref: MetaCyc:TRP +xref: PDBeChem:TRP +xref: PMID:11395471 "Europe PMC" +xref: PMID:11750787 "Europe PMC" +xref: PMID:11888576 "Europe PMC" +xref: PMID:12766158 "Europe PMC" +xref: PMID:12830226 "Europe PMC" +xref: PMID:12871129 "Europe PMC" +xref: PMID:15206750 "Europe PMC" +xref: PMID:16740930 "Europe PMC" +xref: PMID:16934873 "Europe PMC" +xref: PMID:17127472 "Europe PMC" +xref: PMID:17177562 "Europe PMC" +xref: PMID:17430113 "Europe PMC" +xref: PMID:17585690 "Europe PMC" +xref: PMID:17690425 "Europe PMC" +xref: PMID:17826001 "Europe PMC" +xref: PMID:18234569 "Europe PMC" +xref: PMID:18419734 "Europe PMC" +xref: PMID:18949702 "Europe PMC" +xref: PMID:19896323 "Europe PMC" +xref: PMID:21856896 "Europe PMC" +xref: PMID:22071091 "Europe PMC" +xref: PMID:22162421 "Europe PMC" +xref: PMID:22299628 "Europe PMC" +xref: PMID:22386992 "Europe PMC" +xref: PMID:22402312 "Europe PMC" +xref: PMID:22415302 "Europe PMC" +xref: PMID:22415306 "Europe PMC" +xref: PMID:2917974 "Europe PMC" +xref: Reaxys:86197 "Reaxys" +xref: Wikipedia:Tryptophan +xref: YMDB:YMDB00126 +is_a: CHEBI:27897 ! tryptophan +is_a: CHEBI:73690 ! erythrose 4-phosphate/phosphoenolpyruvate family amino acid +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:35469 ! antidepressant +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:32702 ! L-tryptophanate +relationship: is_conjugate_base_of CHEBI:32704 ! L-tryptophanium +relationship: is_enantiomer_of CHEBI:16296 ! D-tryptophan +relationship: is_tautomer_of CHEBI:57912 ! L-tryptophan zwitterion + +[Term] +id: CHEBI:16856 +name: glutathione +namespace: chebi_ontology +alt_id: CHEBI:12402 +alt_id: CHEBI:14327 +alt_id: CHEBI:24334 +alt_id: CHEBI:42873 +alt_id: CHEBI:43049 +alt_id: CHEBI:5437 +def: "A tripeptide compound consisting of glutamic acid attached via its side chain to the N-terminus of cysteinylglycine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "307.084" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "307.32300" RELATED MASS [ChEBI] +synonym: "5-L-Glutamyl-L-cysteinylglycine" RELATED [KEGG_COMPOUND] +synonym: "C10H17N3O6S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "gamma-L-Glutamyl-L-cysteinyl-glycine" RELATED [KEGG_COMPOUND] +synonym: "Glutathione" EXACT [KEGG_COMPOUND] +synonym: "Glutathione-SH" RELATED [HMDB] +synonym: "GSH" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C10H17N3O6S/c11-5(10(18)19)1-2-7(14)13-6(4-20)9(17)12-3-8(15)16/h5-6,20H,1-4,11H2,(H,12,17)(H,13,14)(H,15,16)(H,18,19)/t5-,6-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-gamma-glutamyl-L-cysteinylglycine" EXACT IUPAC_NAME [IUPAC] +synonym: "N-(N-gamma-L-Glutamyl-L-cysteinyl)glycine" RELATED [KEGG_COMPOUND] +synonym: "N[C@@H](CCC(=O)N[C@@H](CS)C(=O)NCC(O)=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "Reduced glutathione" RELATED [KEGG_COMPOUND] +synonym: "RWSXRVCMGQZWBV-WDSKDSINSA-N" RELATED InChIKey [ChEBI] +xref: CAS:70-18-8 "ChemIDplus" +xref: Drug_Central:1312 "DrugCentral" +xref: DrugBank:DB00143 +xref: HMDB:HMDB00125 +xref: KEGG:C00051 +xref: KEGG:D00014 +xref: KNApSAcK:C00001518 +xref: MetaCyc:GLUTATHIONE +xref: PDBeChem:GSH +xref: PMID:17439666 "Europe PMC" +xref: PMID:4200890 "Europe PMC" +xref: PMID:4745654 "Europe PMC" +xref: Reaxys:1729812 "Reaxys" +xref: Wikipedia:Glutathione +is_a: CHEBI:29256 ! thiol +is_a: CHEBI:47923 ! tripeptide +is_a: CHEBI:83824 ! L-cysteine derivative +relationship: has_role CHEBI:22586 ! antioxidant +relationship: has_role CHEBI:23357 ! cofactor +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:85046 ! skin lightening agent +relationship: is_conjugate_acid_of CHEBI:57925 ! glutathionate(1-) + +[Term] +id: CHEBI:16857 +name: L-threonine +namespace: chebi_ontology +alt_id: CHEBI:13175 +alt_id: CHEBI:21403 +alt_id: CHEBI:42083 +alt_id: CHEBI:45843 +alt_id: CHEBI:45983 +alt_id: CHEBI:6308 +def: "An optically active form of threonine having L-configuration." [] +subset: 3_STAR +synonym: "(2S)-threonine" RELATED [ChemIDplus] +synonym: "(2S,3R)-(-)-Threonine" RELATED [HMDB] +synonym: "(2S,3R)-2-amino-3-hydroxybutanoic acid" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "119.058" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "119.11920" RELATED MASS [ChEBI] +synonym: "2-Amino-3-hydroxybutyric acid" RELATED [KEGG_COMPOUND] +synonym: "AYFVYJQAPQTCCC-GBXIJSLDSA-N" RELATED InChIKey [ChEBI] +synonym: "C4H9NO3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C[C@@H](O)[C@H](N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/t2-,3+/m1/s1" RELATED InChI [ChEBI] +synonym: "L-(-)-Threonine" RELATED [DrugBank] +synonym: "L-2-Amino-3-hydroxybutyric acid" RELATED [HMDB] +synonym: "L-alpha-amino-beta-hydroxybutyric acid" RELATED [NIST_Chemistry_WebBook] +synonym: "L-Threonin" RELATED [ChEBI] +synonym: "L-Threonine" EXACT [KEGG_COMPOUND] +synonym: "L-threonine" EXACT IUPAC_NAME [IUPAC] +synonym: "T" RELATED [ChEBI] +synonym: "Thr" RELATED [ChEBI] +synonym: "THREONINE" RELATED [PDBeChem] +xref: Beilstein:1721646 "Beilstein" +xref: CAS:72-19-5 "ChemIDplus" +xref: Drug_Central:4254 "DrugCentral" +xref: DrugBank:DB00156 +xref: ECMDB:ECMDB00167 +xref: Gmelin:82510 "Gmelin" +xref: HMDB:HMDB00167 +xref: KEGG:C00188 +xref: KEGG:D00041 +xref: KNApSAcK:C00001394 +xref: PDBeChem:THR +xref: PMID:11964235 "Europe PMC" +xref: PMID:12523390 "Europe PMC" +xref: PMID:16659349 "Europe PMC" +xref: PMID:17379183 "Europe PMC" +xref: PMID:22289691 "Europe PMC" +xref: PMID:22342587 "Europe PMC" +xref: PMID:22513921 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:24671569 "Europe PMC" +xref: Reaxys:1721646 "Reaxys" +xref: UM-BBD_compID:c0413 "UM-BBD" +xref: Wikipedia:Threonine +xref: YMDB:YMDB00214 +is_a: CHEBI:22658 ! aspartate family amino acid +is_a: CHEBI:26986 ! threonine +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_acid_of CHEBI:32820 ! L-threoninate +relationship: is_conjugate_base_of CHEBI:32822 ! L-threoninium +relationship: is_enantiomer_of CHEBI:16398 ! D-threonine +relationship: is_tautomer_of CHEBI:57926 ! L-threonine zwitterion + +[Term] +id: CHEBI:16862 +name: nucleoside diphosphate +namespace: chebi_ontology +alt_id: CHEBI:13401 +alt_id: CHEBI:13662 +alt_id: CHEBI:14675 +alt_id: CHEBI:25606 +alt_id: CHEBI:7428 +alt_id: CHEBI:7652 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "292.983" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "293.08240" RELATED MASS [ChEBI] +synonym: "C5H11O10P2R" RELATED FORMULA [ChEBI] +synonym: "NDP" RELATED [KEGG_COMPOUND] +synonym: "Nucleoside diphosphate" EXACT [KEGG_COMPOUND] +synonym: "nucleoside diphosphates" RELATED [ChEBI] +synonym: "O[C@H]1[C@H]([*])O[C@H](COP(O)(=O)OP(O)(O)=O)[C@H]1O" RELATED SMILES [ChEBI] +xref: KEGG:C00454 +is_a: CHEBI:25608 ! nucleoside phosphate +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: is_conjugate_acid_of CHEBI:57930 ! nucleoside 5'-diphosphate(3-) + +[Term] +id: CHEBI:16867 +name: D-methionine +namespace: chebi_ontology +alt_id: CHEBI:13005 +alt_id: CHEBI:21065 +alt_id: CHEBI:4215 +alt_id: CHEBI:44071 +def: "An optically active form of methionine having D-configuration." [] +subset: 3_STAR +synonym: "(2R)-2-amino-4-(methylsulfanyl)butanoic acid" RELATED [IUPAC] +synonym: "(R)-2-amino-4-(methylthio)butanoic acid" RELATED [JCBN] +synonym: "(R)-methionine" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "149.051" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "149.21238" RELATED MASS [ChEBI] +synonym: "C5H11NO2S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CSCC[C@@H](N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "D-2-Amino-4-(methylthio)butyric acid" RELATED [KEGG_COMPOUND] +synonym: "D-Methionin" RELATED [ChEBI] +synonym: "D-METHIONINE" EXACT [PDBeChem] +synonym: "D-Methionine" EXACT [KEGG_COMPOUND] +synonym: "D-methionine" EXACT IUPAC_NAME [IUPAC] +synonym: "FFEARJCKVFRZRR-SCSAIBSYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/t4-/m1/s1" RELATED InChI [ChEBI] +synonym: "MED" RELATED [PDBeChem] +xref: Beilstein:1722293 "Beilstein" +xref: CAS:348-67-4 "ChemIDplus" +xref: DrugBank:DB02893 +xref: ECMDB:ECMDB21203 +xref: Gmelin:26934 "Gmelin" +xref: KEGG:C00855 +xref: MetaCyc:CPD-218 +xref: PDBeChem:MED +xref: PMID:15375647 "Europe PMC" +xref: PMID:20431016 "Europe PMC" +xref: PMID:20872028 "Europe PMC" +xref: PMID:21480759 "Europe PMC" +xref: PMID:21750343 "Europe PMC" +xref: PMID:21924333 "Europe PMC" +xref: PMID:22192214 "Europe PMC" +xref: PMID:22304623 "Europe PMC" +xref: PMID:318639 "Europe PMC" +xref: Reaxys:1722293 "Reaxys" +xref: YMDB:YMDB00816 +is_a: CHEBI:16733 ! D-alpha-amino acid +is_a: CHEBI:16811 ! methionine +relationship: is_conjugate_acid_of CHEBI:32637 ! D-methioninate +relationship: is_conjugate_base_of CHEBI:32638 ! D-methioninium +relationship: is_enantiomer_of CHEBI:16643 ! L-methionine +relationship: is_tautomer_of CHEBI:57932 ! D-methionine zwitterion + +[Term] +id: CHEBI:16890 +name: glycerol monophosphate +namespace: chebi_ontology +alt_id: CHEBI:10649 +alt_id: CHEBI:12849 +alt_id: CHEBI:35141 +alt_id: CHEBI:35772 +subset: 3_STAR +synonym: "C3H9O6P" RELATED FORMULA [KEGG_COMPOUND] +synonym: "glycerol dihydrogen phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "glycerophosphoric acid" RELATED [ChemIDplus] +synonym: "sn-Glyceryl phosphate" RELATED [KEGG_COMPOUND] +xref: CAS:27082-31-1 "ChemIDplus" +xref: KEGG:C03189 +is_a: CHEBI:26707 ! glycerol phosphate + +[Term] +id: CHEBI:16891 +name: glyoxylic acid +namespace: chebi_ontology +alt_id: CHEBI:24421 +alt_id: CHEBI:42767 +alt_id: CHEBI:5509 +def: "A 2-oxo monocarboxylic acid that is acetic acid bearing an oxo group at the alpha carbon atom." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "74.000" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "74.03548" RELATED MASS [ChEBI] +synonym: "[H]C(=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "alpha-ketoacetic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "C2H2O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "formylformic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "Glyoxalate" RELATED [KEGG_COMPOUND] +synonym: "Glyoxalsaeure" RELATED [ChEBI] +synonym: "Glyoxylate" RELATED [KEGG_COMPOUND] +synonym: "GLYOXYLIC ACID" EXACT [PDBeChem] +synonym: "Glyoxylic acid" EXACT [KEGG_COMPOUND] +synonym: "Glyoxylsaeure" RELATED [ChEBI] +synonym: "HHLFWLYXYJOTON-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C2H2O3/c3-1-2(4)5/h1H,(H,4,5)" RELATED InChI [ChEBI] +synonym: "oxalaldehydic acid" RELATED [ChemIDplus] +synonym: "oxoacetic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "oxoethanoic acid" RELATED [ChemIDplus] +xref: Beilstein:741891 "Beilstein" +xref: CAS:298-12-4 "KEGG COMPOUND" +xref: DrugBank:DB04343 +xref: Gmelin:25752 "Gmelin" +xref: HMDB:HMDB00119 +xref: KEGG:C00048 +xref: KNApSAcK:C00001186 +xref: MetaCyc:GLYOX +xref: PDBeChem:GLV +xref: PMID:11479160 "Europe PMC" +xref: PMID:16396466 "Europe PMC" +xref: PMID:22580421 "Europe PMC" +xref: PMID:23790896 "Europe PMC" +xref: Reaxys:741891 "Reaxys" +xref: Wikipedia:Glyoxylic_acid +is_a: CHEBI:26643 ! aldehydic acid +is_a: CHEBI:35910 ! 2-oxo monocarboxylic acid +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:36655 ! glyoxylate + +[Term] +id: CHEBI:16898 +name: pyrimidine +namespace: chebi_ontology +alt_id: CHEBI:14982 +alt_id: CHEBI:44847 +alt_id: CHEBI:8675 +def: "The parent compound of the pyrimidines; a diazine having the two nitrogens at the 1- and 3-positions." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,3-Diazin" RELATED [ChEBI] +synonym: "1,3-Diazine" RELATED [KEGG_COMPOUND] +synonym: "80.037" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "80.08804" RELATED MASS [ChEBI] +synonym: "c1cncnc1" RELATED SMILES [ChEBI] +synonym: "C4H4N2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CZPWVGJYEJSRLH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H" RELATED InChI [ChEBI] +synonym: "m-diazine" RELATED [NIST_Chemistry_WebBook] +synonym: "Metadiazine" RELATED [KEGG_COMPOUND] +synonym: "Pyrimidin" RELATED [ChEBI] +synonym: "PYRIMIDINE" EXACT [PDBeChem] +synonym: "Pyrimidine" EXACT [KEGG_COMPOUND] +synonym: "pyrimidine" EXACT IUPAC_NAME [IUPAC] +synonym: "pyrimidine" EXACT [UniProt] +synonym: "Pyrimidine base" RELATED [KEGG_COMPOUND] +xref: Beilstein:103894 "Beilstein" +xref: CAS:289-95-2 "KEGG COMPOUND" +xref: Gmelin:49324 "Gmelin" +xref: KEGG:C00396 +xref: PDBeChem:P1R +xref: PMID:8070089 "Europe PMC" +is_a: CHEBI:38627 ! diazine +is_a: CHEBI:39447 ! pyrimidines +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite + +[Term] +id: CHEBI:16905 +name: keto-D-fructose 1,6-bisphosphate +namespace: chebi_ontology +alt_id: CHEBI:12924 +alt_id: CHEBI:4120 +def: "A ketohexose bisphosphate that is D-fructose substituted by phosphate groups at positions 1 and 6." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,6-di-O-phosphono-D-fructose" RELATED [ChEBI] +synonym: "339.996" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "340.11568" RELATED MASS [ChEBI] +synonym: "[H][C@@](O)(COP(O)(O)=O)[C@@]([H])(O)[C@]([H])(O)C(=O)COP(O)(O)=O" RELATED SMILES [ChEBI] +synonym: "C6H14O12P2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-fructose 1,6-bis(dihydrogen phosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "D-Fructose 1,6-bisphosphate" RELATED [KEGG_COMPOUND] +synonym: "D-fructose-1,6-diphosphate" RELATED [ChEBI] +synonym: "fructose-1,6-diphosphate" RELATED [ChEBI] +synonym: "Harden-Young ester" RELATED [HMDB] +synonym: "InChI=1S/C6H14O12P2/c7-3(1-17-19(11,12)13)5(9)6(10)4(8)2-18-20(14,15)16/h3,5-7,9-10H,1-2H2,(H2,11,12,13)(H2,14,15,16)/t3-,5-,6-/m1/s1" RELATED InChI [ChEBI] +synonym: "XPYBSIWDXQFNMH-UYFOZJQFSA-N" RELATED InChIKey [ChEBI] +xref: CAS:488-69-7 "KEGG COMPOUND" +xref: HMDB:HMDB01058 +xref: KEGG:C00354 +xref: MetaCyc:FRUCTOSE-16-DIPHOSPHATE +xref: PMID:13150027 "Europe PMC" +xref: PMID:4610358 "Europe PMC" +xref: Reaxys:1729954 "Reaxys" +is_a: CHEBI:78682 ! D-fructose 1,6-bisphosphate +relationship: has_functional_parent CHEBI:15824 ! D-fructose +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite + +[Term] +id: CHEBI:16914 +name: salicylic acid +namespace: chebi_ontology +alt_id: CHEBI:26597 +alt_id: CHEBI:45521 +alt_id: CHEBI:9006 +def: "A monohydroxybenzoic acid that is benzoic acid with a hydroxy group at the ortho position. It is obtained from the bark of the white willow and wintergreen leaves." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "138.032" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "138.12070" RELATED MASS [ChEBI] +synonym: "2-carboxyphenol" RELATED [NIST_Chemistry_WebBook] +synonym: "2-HYDROXYBENZOIC ACID" RELATED [PDBeChem] +synonym: "2-hydroxybenzoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "C7H6O3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C7H6O3/c8-6-4-2-1-3-5(6)7(9)10/h1-4,8H,(H,9,10)" RELATED InChI [ChEBI] +synonym: "o-carboxyphenol" RELATED [NIST_Chemistry_WebBook] +synonym: "o-Hydroxybenzoic acid" RELATED [KEGG_COMPOUND] +synonym: "o-hydroxybenzoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "OC(=O)c1ccccc1O" RELATED SMILES [ChEBI] +synonym: "Salicylic acid" EXACT [KEGG_COMPOUND] +synonym: "YGSDEFSMJLZEOE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:774890 "Beilstein" +xref: CAS:69-72-7 "KEGG COMPOUND" +xref: Drug_Central:2416 "DrugCentral" +xref: DrugBank:DB00936 +xref: Gmelin:3418 "Gmelin" +xref: HMDB:HMDB01895 +xref: KEGG:C00805 +xref: KEGG:D00097 +xref: KNApSAcK:C00000206 +xref: LINCS:LSM-4763 +xref: MetaCyc:CPD-110 +xref: PDBeChem:SAL +xref: PMID:11016405 "Europe PMC" +xref: PMID:12865403 "Europe PMC" +xref: PMID:1650428 "Europe PMC" +xref: PMID:19400653 "Europe PMC" +xref: PMID:19816125 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:3425858 "Europe PMC" +xref: Reaxys:774890 "Reaxys" +xref: Wikipedia:Salicylic_Acid +is_a: CHEBI:25389 ! monohydroxybenzoic acid +relationship: has_role CHEBI:35441 ! antiinfective agent +relationship: has_role CHEBI:35718 ! antifungal agent +relationship: has_role CHEBI:37848 ! plant hormone +relationship: has_role CHEBI:50176 ! keratolytic drug +relationship: has_role CHEBI:73181 ! EC 1.11.1.11 (L-ascorbate peroxidase) inhibitors +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_acid_of CHEBI:30762 ! salicylate + +[Term] +id: CHEBI:16947 +name: citrate(3-) +namespace: chebi_ontology +alt_id: CHEBI:13999 +alt_id: CHEBI:23321 +alt_id: CHEBI:42563 +def: "A tricarboxylic acid trianion, obtained by deprotonation of the three carboxy groups of citric acid." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "189.004" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "189.09970" RELATED MASS [ChEBI] +synonym: "2-hydroxy-1,2,3-propanetricarboxylate" RELATED [ChEBI] +synonym: "2-hydroxy-1,2,3-propanetricarboxylate(3-)" RELATED [ChemIDplus] +synonym: "2-hydroxy-1,2,3-propanetricarboxylic acid, ion(3-)" RELATED [ChemIDplus] +synonym: "2-hydroxypropane-1,2,3-tricarboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "2-hydroxytricarballylate" RELATED [ChEBI] +synonym: "C6H5O7" RELATED FORMULA [ChEBI] +synonym: "cit" RELATED [IUPAC] +synonym: "cit(3-)" RELATED [ChEBI] +synonym: "citrate" RELATED [UniProt] +synonym: "CITRATE ANION" RELATED [PDBeChem] +synonym: "InChI=1S/C6H8O7/c7-3(8)1-6(13,5(11)12)2-4(9)10/h13H,1-2H2,(H,7,8)(H,9,10)(H,11,12)/p-3" RELATED InChI [ChEBI] +synonym: "KRKNYBCHXYNGOX-UHFFFAOYSA-K" RELATED InChIKey [ChEBI] +synonym: "OC(CC([O-])=O)(CC([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:1884707 "Beilstein" +xref: CAS:126-44-3 "ChemIDplus" +xref: Gmelin:4239 "Gmelin" +xref: KEGG:C00158 "ChEBI" +xref: PDBeChem:FLC +xref: Reaxys:1884707 "Reaxys" +is_a: CHEBI:133748 ! citrate anion +is_a: CHEBI:27092 ! tricarboxylic acid trianion +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:132362 ! citrate(4-) +relationship: is_conjugate_base_of CHEBI:35808 ! citrate(2-) + +[Term] +id: CHEBI:16958 +name: beta-alanine +namespace: chebi_ontology +alt_id: CHEBI:10343 +alt_id: CHEBI:12389 +alt_id: CHEBI:22821 +alt_id: CHEBI:41050 +def: "A naturally-occurring beta-amino acid comprising propionic acid with the amino group in the 3-position." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3-aminopropanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "3-aminopropanoic acid" RELATED [ChEBI] +synonym: "3-Aminopropionic acid" RELATED [KEGG_COMPOUND] +synonym: "89.048" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "89.09322" RELATED MASS [ChEBI] +synonym: "bAla" RELATED [ChEBI] +synonym: "BETA-ALANINE" EXACT [PDBeChem] +synonym: "beta-Alanine" EXACT [KEGG_COMPOUND] +synonym: "beta-alanine" EXACT IUPAC_NAME [IUPAC] +synonym: "beta-aminopropionic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "C3H7NO2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "H-beta-Ala-OH" RELATED [ChEBI] +synonym: "InChI=1S/C3H7NO2/c4-2-1-3(5)6/h1-2,4H2,(H,5,6)" RELATED InChI [ChEBI] +synonym: "NCCC(O)=O" RELATED SMILES [ChEBI] +synonym: "omega-aminopropionic acid" RELATED [ChEBI] +synonym: "UCMIRNVEIXFBKS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:906793 "Beilstein" +xref: CAS:107-95-9 "KEGG COMPOUND" +xref: DrugBank:DB03107 +xref: Gmelin:49614 "Gmelin" +xref: HMDB:HMDB00056 +xref: KEGG:C00099 +xref: KEGG:D07561 +xref: KNApSAcK:C00001333 +xref: MetaCyc:B-ALANINE +xref: PDBeChem:BAL +xref: PMID:11139233 "Europe PMC" +xref: PMID:11850512 "Europe PMC" +xref: PMID:12107759 "Europe PMC" +xref: PMID:12887142 "Europe PMC" +xref: PMID:14363188 "Europe PMC" +xref: PMID:16934791 "Europe PMC" +xref: PMID:18528519 "Europe PMC" +xref: PMID:18613640 "Europe PMC" +xref: PMID:19239140 "Europe PMC" +xref: PMID:19955842 "Europe PMC" +xref: PMID:20199122 "Europe PMC" +xref: PMID:20386120 "Europe PMC" +xref: PMID:20479615 "Europe PMC" +xref: PMID:20994958 "Europe PMC" +xref: PMID:22735334 "Europe PMC" +xref: Reaxys:906793 "Reaxys" +xref: Wikipedia:Beta-Alanine +is_a: CHEBI:33706 ! beta-amino acid +relationship: has_role CHEBI:25512 ! neurotransmitter +relationship: has_role CHEBI:35222 ! inhibitor +relationship: has_role CHEBI:48705 ! agonist +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:63070 ! beta-alaninate +relationship: is_tautomer_of CHEBI:57966 ! beta-alanine zwitterion + +[Term] +id: CHEBI:16976 +name: hygromycin B +namespace: chebi_ontology +alt_id: CHEBI:14426 +alt_id: CHEBI:24752 +alt_id: CHEBI:43202 +alt_id: CHEBI:5821 +subset: 3_STAR +synonym: "(1R,2S,3R,5S,6R)-3-amino-2,6-dihydroxy-5-(methylamino)cyclohexyl O-6-amino-6-deoxy-L-glycero-D-galacto-heptopyranosylidene-(1->2-3)-beta-D-talopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "527.233" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "527.52010" RELATED MASS [ChEBI] +synonym: "Antibiotic A-396-II" RELATED [KEGG_COMPOUND] +synonym: "C20H37N3O13" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CN[C@H]1C[C@@H](N)[C@H](O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@@H]3O[C@@]4(O[C@H](C(N)CO)[C@H](O)[C@H](O)[C@H]4O)O[C@H]23)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "GRRNUXAQVGOGFE-NZSRVPFOSA-N" RELATED InChIKey [ChEBI] +synonym: "HYGROMYCIN B" EXACT [PDBeChem] +synonym: "Hygromycin B" EXACT [KEGG_COMPOUND] +synonym: "InChI=1S/C20H37N3O13/c1-23-7-2-5(21)9(26)15(10(7)27)33-19-17-16(11(28)8(4-25)32-19)35-20(36-17)18(31)13(30)12(29)14(34-20)6(22)3-24/h5-19,23-31H,2-4,21-22H2,1H3/t5-,6?,7+,8-,9+,10-,11+,12-,13+,14-,15-,16+,17+,18-,19+,20-/m1/s1" RELATED InChI [ChEBI] +synonym: "O-6-amino-6-deoxy-L-glycero-D-galacto-heptopyranosylidene-(1->2-3)-O-beta-D-talopyranosyl-(1->5)-2-deoxy-N(3)-methyl-D-streptamine" RELATED [ChEBI] +xref: Beilstein:6755837 "Beilstein" +xref: CAS:31282-04-9 "KEGG COMPOUND" +xref: colombos:HYGROMYCIN_B +xref: KEGG:C01925 +xref: PDBeChem:HYG +is_a: CHEBI:24753 ! hygromycin +is_a: CHEBI:71989 ! ortho ester +relationship: has_role CHEBI:35443 ! anthelminthic drug +relationship: is_conjugate_base_of CHEBI:57971 ! hygromycin B(3+) + +[Term] +id: CHEBI:16977 +name: L-alanine +namespace: chebi_ontology +alt_id: CHEBI:13069 +alt_id: CHEBI:21216 +alt_id: CHEBI:40734 +alt_id: CHEBI:40735 +alt_id: CHEBI:46308 +alt_id: CHEBI:6171 +def: "The L-enantiomer of alanine." [] +subset: 3_STAR +synonym: "(2S)-2-aminopropanoic acid" RELATED [IUPAC] +synonym: "(S)-2-aminopropanoic acid" RELATED [ChEBI] +synonym: "(S)-alanine" RELATED [NIST_Chemistry_WebBook] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "89.048" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "89.09322" RELATED MASS [ChEBI] +synonym: "A" RELATED [ChEBI] +synonym: "Ala" RELATED [NIST_Chemistry_WebBook] +synonym: "ALANINE" RELATED [PDBeChem] +synonym: "C3H7NO2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C[C@H](N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-2-Aminopropionic acid" RELATED [KEGG_COMPOUND] +synonym: "L-Alanin" RELATED [ChEBI] +synonym: "L-Alanine" EXACT [KEGG_COMPOUND] +synonym: "L-alanine" EXACT IUPAC_NAME [IUPAC] +synonym: "L-alpha-Alanine" RELATED [KEGG_COMPOUND] +synonym: "L-alpha-alanine" RELATED [NIST_Chemistry_WebBook] +synonym: "QNAYBMKLOCPYGJ-REOHCLBHSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1720248 "Beilstein" +xref: CAS:56-41-7 "KEGG COMPOUND" +xref: Drug_Central:4255 "DrugCentral" +xref: DrugBank:DB00160 +xref: ECMDB:ECMDB00161 +xref: Gmelin:49628 "Gmelin" +xref: HMDB:HMDB00161 +xref: KEGG:C00041 +xref: KEGG:D00012 +xref: KNApSAcK:C00001332 +xref: MetaCyc:ALPHA-ALANINE +xref: PDBeChem:ALA_LFOH +xref: PMID:18235971 "Europe PMC" +xref: PMID:22735334 "Europe PMC" +xref: PMID:3275662 "Europe PMC" +xref: Reaxys:1720248 "Reaxys" +xref: Wikipedia:Alanine +xref: YMDB:YMDB00154 +is_a: CHEBI:16449 ! alanine +is_a: CHEBI:26463 ! pyruvate family amino acid +relationship: has_role CHEBI:77881 ! EC 4.3.1.15 (diaminopropionate ammonia-lyase) inhibitor +relationship: is_conjugate_acid_of CHEBI:32431 ! L-alaninate +relationship: is_conjugate_base_of CHEBI:32432 ! L-alaninium +relationship: is_enantiomer_of CHEBI:15570 ! D-alanine +relationship: is_tautomer_of CHEBI:57972 ! L-alanine zwitterion + +[Term] +id: CHEBI:16988 +name: D-ribose +namespace: chebi_ontology +alt_id: CHEBI:13011 +alt_id: CHEBI:21078 +def: "A ribose in which the chiral carbon atom furthest away from the aldehyde group (C4') has the same configuration as in D-glyceraldehyde." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.12990" RELATED MASS [ChEBI] +synonym: "C5H10O5" RELATED FORMULA [ChEBI] +synonym: "D-Rib" RELATED [JCBN] +synonym: "D-ribo-pentose" EXACT IUPAC_NAME [IUPAC] +synonym: "D-ribose" EXACT IUPAC_NAME [IUPAC] +xref: DrugBank:DB01936 +xref: PMID:24404872 "Europe PMC" +xref: PMID:24752650 "Europe PMC" +is_a: CHEBI:33942 ! ribose +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_enantiomer_of CHEBI:46997 ! L-ribose + +[Term] +id: CHEBI:16997 +name: propane-1,2-diol +namespace: chebi_ontology +alt_id: CHEBI:14899 +alt_id: CHEBI:8469 +def: "The simplest member of the class of propane-1,2-diols, consisting of propane in which a hydrogen at position 1 and a hydrogen at position 2 are substituted by hydroxy groups. A colourless, viscous, hygroscopic, low-melting (-59degreeC) and high-boiling (188degreeC) liquid with low toxicity, it is used as a solvent, emulsifying agent, and antifreeze." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,2-dihydroxypropane" RELATED [ChemIDplus] +synonym: "1,2-Propanediol" RELATED [KEGG_COMPOUND] +synonym: "1,2-Propylenglykol" RELATED [ChemIDplus] +synonym: "2-hydroxypropanol" RELATED [ChemIDplus] +synonym: "76.052" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "76.09442" RELATED MASS [ChEBI] +synonym: "alpha-propyleneglycol" RELATED [ChemIDplus] +synonym: "C3H8O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(O)CO" RELATED SMILES [ChEBI] +synonym: "CH3CH(OH)CH2OH" RELATED [ChEBI] +synonym: "DNIAPMSPPWPWGF-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "HOCH2CH(OH)CH3" RELATED [ChEBI] +synonym: "HOCH2CH(OH)Me" RELATED [ChEBI] +synonym: "InChI=1S/C3H8O2/c1-3(5)2-4/h3-5H,2H2,1H3" RELATED InChI [ChEBI] +synonym: "isopropylene glycol" RELATED [ChemIDplus] +synonym: "MeCH(OH)CH2OH" RELATED [ChEBI] +synonym: "methyl glycol" RELATED [ChEBI] +synonym: "methylethyl glycol" RELATED [ChemIDplus] +synonym: "methylethylene glycol" RELATED [ChemIDplus] +synonym: "monopropylene glycol" RELATED [ChemIDplus] +synonym: "PPD" RELATED [ChEBI] +synonym: "Propane-1,2-diol" EXACT [KEGG_COMPOUND] +synonym: "propane-1,2-diol" EXACT [UniProt] +synonym: "propane-1,2-diol" EXACT IUPAC_NAME [IUPAC] +synonym: "Propylene glycol" RELATED [KEGG_COMPOUND] +xref: CAS:57-55-6 "KEGG COMPOUND" +xref: Drug_Central:4024 "DrugCentral" +xref: DrugBank:DB01839 +xref: HMDB:HMDB01881 +xref: KEGG:C00583 +xref: KEGG:D00078 +xref: KNApSAcK:C00007410 +xref: LINCS:LSM-36856 +xref: PMID:15665701 "Europe PMC" +xref: PMID:16078503 "Europe PMC" +xref: PMID:18346395 "Europe PMC" +xref: PMID:18845115 "Europe PMC" +xref: PMID:21616561 "Europe PMC" +xref: Reaxys:1340498 "Reaxys" +xref: Wikipedia:Propylene_glycol +is_a: CHEBI:26284 ! propane-1,2-diols +relationship: has_role CHEBI:48356 ! protic solvent +relationship: has_role CHEBI:50904 ! allergen +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76967 ! human xenobiotic metabolite + +[Term] +id: CHEBI:17012 +name: N-acetylneuraminic acid +namespace: chebi_ontology +alt_id: CHEBI:21620 +alt_id: CHEBI:7214 +def: "An N-acylneuraminic acid where the N-acyl group is specified as acetyl." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "309.106" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "309.26990" RELATED MASS [ChEBI] +synonym: "5-Acetamido-3,5-dideoxy-D-glycero-D-galacto-2-nonulosonic acid" RELATED [KEGG_COMPOUND] +synonym: "5-acetamido-3,5-dideoxy-D-glycero-D-galacto-non-2-ulopyranosonic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]1(OC(O)(C[C@H](O)[C@H]1NC(C)=O)C(O)=O)[C@H](O)[C@H](O)CO" RELATED SMILES [ChEBI] +synonym: "Aceneuramic acid" RELATED [ChemIDplus] +synonym: "aceneuramic acid" RELATED INN [ChemIDplus] +synonym: "acide aceneuramique" RELATED INN [ChemIDplus] +synonym: "acidium aceneuramicum" RELATED INN [ChemIDplus] +synonym: "acido aceneuramico" RELATED INN [ChemIDplus] +synonym: "C11H19NO9" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C11H19NO9/c1-4(14)12-7-5(15)2-11(20,10(18)19)21-9(7)8(17)6(16)3-13/h5-9,13,15-17,20H,2-3H2,1H3,(H,12,14)(H,18,19)/t5-,6+,7+,8+,9+,11?/m0/s1" RELATED InChI [ChEBI] +synonym: "N-Acetylneuraminic acid" EXACT [KEGG_COMPOUND] +synonym: "Neu5Ac" RELATED [KEGG_COMPOUND] +synonym: "NeuAc" RELATED [ChEBI] +synonym: "O-sialic acid" RELATED [MetaCyc] +synonym: "SQVRNKJHWKZAKO-LUWBGTNYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:2951361 "Beilstein" +xref: CAS:131-48-6 "KEGG COMPOUND" +xref: KEGG:C00270 +xref: KNApSAcK:C00019584 +xref: PMID:14960498 "Europe PMC" +xref: PMID:16209099 "Europe PMC" +xref: PMID:16624269 "Europe PMC" +xref: PMID:18487279 "Europe PMC" +xref: PMID:19329108 "Europe PMC" +xref: PMID:7508418 "Europe PMC" +xref: Reaxys:1398688 "Reaxys" +xref: Wikipedia:N-acetylneuraminic_acid +is_a: CHEBI:21622 ! N-acetylneuraminic acids +relationship: has_role CHEBI:22586 ! antioxidant +relationship: has_role CHEBI:52425 ! EC 3.2.1.18 (exo-alpha-sialidase) inhibitor +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76969 ! bacterial metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:35418 ! N-acetylneuraminate + +[Term] +id: CHEBI:17026 +name: progesterone +namespace: chebi_ontology +alt_id: CHEBI:14896 +alt_id: CHEBI:18798 +alt_id: CHEBI:26269 +alt_id: CHEBI:439 +alt_id: CHEBI:45786 +alt_id: CHEBI:8453 +def: "A C21-steroid hormone in which a pregnane skeleton carries oxo substituents at positions 3 and 20 and is unsaturated at C(4)-C(5). As a hormone, it is involved in the female menstrual cycle, pregnancy and embryogenesis of humans and other species." [] +subset: 3_STAR +synonym: "(S)-4-Pregnene-3,20-dione" RELATED [KEGG_COMPOUND] +synonym: "(S)-Pregn-4-en-3,20-dione" RELATED [KEGG_COMPOUND] +synonym: "(S)-Progesterone" RELATED [KEGG_COMPOUND] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "17alpha-progesterone" RELATED [NIST_Chemistry_WebBook] +synonym: "314.225" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "314.46170" RELATED MASS [ChEBI] +synonym: "4-Pregnene-3,20-dione" RELATED [KEGG_COMPOUND] +synonym: "[H][C@@]12CCC3=CC(=O)CC[C@]3(C)[C@@]1([H])CC[C@]1(C)[C@H](CC[C@@]21[H])C(C)=O" RELATED SMILES [ChEBI] +synonym: "Agolutin" RELATED [NIST_Chemistry_WebBook] +synonym: "Akrolutin" RELATED [ChEBI] +synonym: "C21H30O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "corpus luteum hormone" RELATED [ChemIDplus] +synonym: "Crinone" RELATED [ChemIDplus] +synonym: "Delta(4)-pregnene-3,20-dione" RELATED [ChEBI] +synonym: "Gelbkoerperhormon" RELATED [ChEBI] +synonym: "InChI=1S/C21H30O2/c1-13(22)17-6-7-18-16-5-4-14-12-15(23)8-10-20(14,2)19(16)9-11-21(17,18)3/h12,16-19H,4-11H2,1-3H3/t16-,17+,18-,19-,20-,21+/m0/s1" RELATED InChI [ChEBI] +synonym: "luteohormone" RELATED [ChemIDplus] +synonym: "pregn-4-ene-3,20-dione" EXACT IUPAC_NAME [IUPAC] +synonym: "Progesteron" RELATED [ChEBI] +synonym: "PROGESTERONE" EXACT [PDBeChem] +synonym: "Progesterone" EXACT [KEGG_COMPOUND] +synonym: "progesterone" EXACT [UniProt] +synonym: "RJKFOVLPORLFTN-LEKSSAKUSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1915950 "Beilstein" +xref: CAS:57-83-0 "NIST Chemistry WebBook" +xref: colombos:PROGESTERONE +xref: Drug_Central:2279 "DrugCentral" +xref: DrugBank:DB00396 +xref: Gmelin:708590 "Gmelin" +xref: HMDB:HMDB01830 +xref: KEGG:C00410 +xref: KEGG:D00066 +xref: MetaCyc:PROGESTERONE +xref: PDBeChem:STR +xref: PMID:10438974 "Europe PMC" +xref: PMID:9506942 "Europe PMC" +xref: Reaxys:1915950 "Reaxys" +xref: Wikipedia:Progesterone +is_a: CHEBI:36885 ! 20-oxo steroid +is_a: CHEBI:47909 ! 3-oxo-Delta(4) steroid +is_a: CHEBI:64600 ! C21-steroid hormone +relationship: has_parent_hydride CHEBI:8386 ! pregnane +relationship: has_role CHEBI:49323 ! contraceptive drug +relationship: has_role CHEBI:59826 ! progestin +relationship: has_role CHEBI:70709 ! progesterone receptor agonist +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:17032 +name: 2-dehydro-3-deoxy-D-gluconic acid +namespace: chebi_ontology +alt_id: CHEBI:1059 +alt_id: CHEBI:11550 +alt_id: CHEBI:19530 +def: "The 2-dehydro-3-deoxy derivative of D-gluconic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "178.048" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "178.14000" RELATED MASS [ChEBI] +synonym: "2-Dehydro-3-deoxy-D-gluconate" RELATED [KEGG_COMPOUND] +synonym: "2-dehydro-3-deoxy-D-gluconate" RELATED [ChEBI] +synonym: "2-Keto-3-deoxy-D-gluconate" RELATED [KEGG_COMPOUND] +synonym: "3-Deoxy-2-oxo-D-gluconate" RELATED [ChemIDplus] +synonym: "3-deoxy-D-erythro-2-hexulosonic acid" RELATED [ChemIDplus] +synonym: "3-deoxy-D-erythro-hex-2-ulosonic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H10O6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C6H10O6/c7-2-5(10)3(8)1-4(9)6(11)12/h3,5,7-8,10H,1-2H2,(H,11,12)/t3-,5+/m0/s1" RELATED InChI [ChEBI] +synonym: "OC[C@@H](O)[C@@H](O)CC(=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "WPAMZTWLKIDIOP-WVZVXSGGSA-N" RELATED InChIKey [ChEBI] +xref: CAS:17510-99-5 "ChemIDplus" +xref: KEGG:C00204 +xref: PDBeChem:KDG +xref: Reaxys:1724592 "Reaxys" +is_a: CHEBI:24963 ! ketoaldonic acid +is_a: CHEBI:33752 ! hexonic acid +relationship: has_functional_parent CHEBI:33198 ! D-gluconic acid +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:57990 ! 2-dehydro-3-deoxy-D-gluconate + +[Term] +id: CHEBI:17061 +name: D-glutamine +namespace: chebi_ontology +alt_id: CHEBI:12980 +alt_id: CHEBI:21024 +alt_id: CHEBI:4184 +def: "The D-enantiomer of glutamine." [] +subset: 3_STAR +synonym: "(2R)-2,5-diamino-5-oxopentanoic acid" RELATED [IUPAC] +synonym: "(2R)-2-amino-4-carbamoylbutanoic acid" RELATED [JCBN] +synonym: "(R)-2,5-diamino-5-oxopentanoic acid" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "146.069" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "146.14458" RELATED MASS [ChEBI] +synonym: "C5H10N2O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-2-Aminoglutaramic acid" RELATED [KEGG_COMPOUND] +synonym: "D-Glutamin" RELATED [ChEBI] +synonym: "D-Glutamine" EXACT [KEGG_COMPOUND] +synonym: "D-glutamine" EXACT IUPAC_NAME [IUPAC] +synonym: "D-Glutaminsaeure-5-amid" RELATED [ChEBI] +synonym: "DGN" RELATED [PDBeChem] +synonym: "InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/t3-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H](CCC(N)=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "ZDXPYRJPNDTMRX-GSVOUGTGSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1723796 "Beilstein" +xref: CAS:5959-95-5 "KEGG COMPOUND" +xref: DrugBank:DB02174 +xref: ECMDB:ECMDB03423 +xref: Gmelin:1318700 "Gmelin" +xref: HMDB:HMDB03423 +xref: KEGG:C00819 +xref: MetaCyc:GLUTAMIDE +xref: Patent:WO2011109119 +xref: PDBeChem:DGN +xref: PMID:21048866 "Europe PMC" +xref: PMID:21182880 "Europe PMC" +xref: PMID:22291598 "Europe PMC" +xref: PMID:3697715 "Europe PMC" +xref: PMID:7197365 "Europe PMC" +xref: Reaxys:1723796 "Reaxys" +xref: YMDB:YMDB00990 +is_a: CHEBI:16733 ! D-alpha-amino acid +is_a: CHEBI:28300 ! glutamine +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: is_conjugate_acid_of CHEBI:32672 ! D-glutaminate +relationship: is_conjugate_base_of CHEBI:32673 ! D-glutaminium +relationship: is_enantiomer_of CHEBI:18050 ! L-glutamine + +[Term] +id: CHEBI:17062 +name: primary aliphatic amine +namespace: chebi_ontology +alt_id: CHEBI:13431 +alt_id: CHEBI:8749 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "30.034" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "30.04920" RELATED MASS [ChEBI] +synonym: "CH4NR" RELATED FORMULA [ChEBI] +synonym: "NC[*]" RELATED SMILES [ChEBI] +synonym: "primary aliphatic amines" RELATED [ChEBI] +synonym: "RCH2NH2" RELATED [KEGG_COMPOUND] +synonym: "RCH2NH2" RELATED [ChEBI] +xref: KEGG:C00375 +is_a: CHEBI:32877 ! primary amine +relationship: is_conjugate_base_of CHEBI:58001 ! primary aliphatic ammonium ion + +[Term] +id: CHEBI:17076 +name: streptomycin +namespace: chebi_ontology +alt_id: CHEBI:15119 +alt_id: CHEBI:26784 +alt_id: CHEBI:45745 +alt_id: CHEBI:9284 +def: "A amino cyclitol glycoside that consists of streptidine having a disaccharyl moiety attached at the 4-position. The parent of the streptomycin class" [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2,4-Diguanidino-3,5,6-trihydroxycyclohexyl 5-deoxy-2-O-(2-deoxy-2-methylamino-alpha-L-glucopyranosyl)-3-C-formyl-beta-L-lyxopentanofuranoside" RELATED [ChemIDplus] +synonym: "581.266" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "581.57434" RELATED MASS [ChEBI] +synonym: "[2-deoxy-2-(dimethylamino)-alpha-L-glucopyranosyl]-(1->2)-[5-deoxy-3-C-formyl-alpha-L-lyxofuranosyl]-(1->4)-{N',N'''-[(1,3,5/2,4,6)-2,4,5,6-tetrahydroxycyclohexane-1,3-diyl]diguanidine}" RELATED [IUPAC] +synonym: "C21H39N7O12" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CN[C@H]1[C@H](O)[C@@H](O)[C@H](CO)O[C@H]1O[C@H]1[C@@H](O[C@@H](C)[C@]1(O)C=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](NC(N)=N)[C@@H](O)[C@@H]1NC(N)=N" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C21H39N7O12/c1-5-21(36,4-30)16(40-17-9(26-2)13(34)10(31)6(3-29)38-17)18(37-5)39-15-8(28-20(24)25)11(32)7(27-19(22)23)12(33)14(15)35/h4-18,26,29,31-36H,3H2,1-2H3,(H4,22,23,27)(H4,24,25,28)/t5-,6-,7+,8-,9-,10-,11+,12-,13-,14+,15+,16-,17-,18-,21+/m0/s1" RELATED InChI [ChEBI] +synonym: "Kantrex" RELATED BRAND_NAME [DrugBank] +synonym: "N,N'''-[(1R,2R,3S,4R,5R,6S)-4-{5-deoxy-2-O-[2-deoxy-2-(methylamino)-alpha-L-glucopyranosyl]-3-C-formyl-alpha-L-lyxofuranosyloxy}-2,5,6-trihydroxycyclohexane-1,3-diyl]diguanidine" EXACT IUPAC_NAME [IUPAC] +synonym: "SM" RELATED [KEGG_DRUG] +synonym: "streomycin" RELATED [ChEBI] +synonym: "STREPTOMYCIN" EXACT [PDBeChem] +synonym: "streptomycin" RELATED INN [KEGG_DRUG] +synonym: "UCSJYZPVAKXKNQ-HZYVHMACSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:74498 "Beilstein" +xref: CAS:57-92-1 "ChemIDplus" +xref: colombos:STREPTOMYCIN +xref: colombos:STREPTOMYCIN\:+UNKNOWN +xref: Drug_Central:2481 "DrugCentral" +xref: DrugBank:DB01082 +xref: HMDB:HMDB15214 +xref: KEGG:C00413 +xref: KEGG:D08531 +xref: MetaCyc:STREPTOMYCIN +xref: PDBeChem:SRY +xref: Pesticides:streptomycin "Alan Wood's Pesticides" +xref: PMID:11228320 "Europe PMC" +xref: PMID:11905029 "Europe PMC" +xref: PMID:12118520 "Europe PMC" +xref: PMID:13030054 "Europe PMC" +xref: PMID:13116094 "Europe PMC" +xref: PMID:13136149 "Europe PMC" +xref: PMID:13596285 "Europe PMC" +xref: PMID:13691614 "Europe PMC" +xref: PMID:13985260 "Europe PMC" +xref: PMID:13990247 "Europe PMC" +xref: PMID:14623118 "Europe PMC" +xref: PMID:14828344 "Europe PMC" +xref: PMID:14852338 "Europe PMC" +xref: PMID:14939639 "Europe PMC" +xref: PMID:15081082 "Europe PMC" +xref: PMID:15137533 "Europe PMC" +xref: PMID:15207172 "Europe PMC" +xref: PMID:15686853 "Europe PMC" +xref: PMID:15736038 "Europe PMC" +xref: PMID:16904706 "Europe PMC" +xref: PMID:17105735 "Europe PMC" +xref: PMID:17238915 "Europe PMC" +xref: PMID:17429930 "Europe PMC" +xref: PMID:18173084 "Europe PMC" +xref: PMID:18916143 "Europe PMC" +xref: PMID:19052412 "Europe PMC" +xref: PMID:19335957 "Europe PMC" +xref: PMID:21350946 "Europe PMC" +xref: PMID:21362244 "Europe PMC" +xref: PMID:21593257 "Europe PMC" +xref: PMID:21937264 "Europe PMC" +xref: PMID:22101040 "Europe PMC" +xref: Reaxys:74498 "Reaxys" +xref: Wikipedia:Streptomycin +is_a: CHEBI:26788 ! streptomycins +is_a: CHEBI:87113 ! antibiotic antifungal drug +is_a: CHEBI:87114 ! antibiotic fungicide +relationship: has_functional_parent CHEBI:27405 ! streptidine +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: has_role CHEBI:48001 ! protein synthesis inhibitor +relationship: has_role CHEBI:76969 ! bacterial metabolite +relationship: has_role CHEBI:86328 ! antifungal agrochemical +relationship: is_conjugate_base_of CHEBI:58007 ! streptomycin(3+) + +[Term] +id: CHEBI:17087 +name: ketone +namespace: chebi_ontology +alt_id: CHEBI:13427 +alt_id: CHEBI:13646 +alt_id: CHEBI:24974 +alt_id: CHEBI:6127 +alt_id: CHEBI:8742 +def: "A compound in which a carbonyl group is bonded to two carbon atoms: R2C=O (neither R may be H)." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "27.995" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[*]C([*])=O" RELATED SMILES [ChEBI] +synonym: "a ketone" RELATED [UniProt] +synonym: "cetone" RELATED [ChEBI] +synonym: "COR2" RELATED FORMULA [ChEBI] +synonym: "Keton" RELATED [ChEBI] +synonym: "Ketone" EXACT [KEGG_COMPOUND] +synonym: "ketones" EXACT IUPAC_NAME [IUPAC] +synonym: "ketones" RELATED [ChEBI] +synonym: "R-CO-R'" RELATED [KEGG_COMPOUND] +xref: KEGG:C01450 +xref: Wikipedia:Ketone +is_a: CHEBI:36586 ! carbonyl compound + +[Term] +id: CHEBI:17115 +name: L-serine +namespace: chebi_ontology +alt_id: CHEBI:13167 +alt_id: CHEBI:21387 +alt_id: CHEBI:45440 +alt_id: CHEBI:45451 +alt_id: CHEBI:45590 +alt_id: CHEBI:45597 +alt_id: CHEBI:45677 +alt_id: CHEBI:6301 +def: "The L-enantiomer of serine." [] +subset: 3_STAR +synonym: "(2S)-2-amino-3-hydroxypropanoic acid" RELATED [IUPAC] +synonym: "(S)-(-)-serine" RELATED [NIST_Chemistry_WebBook] +synonym: "(S)-2-amino-3-hydroxypropanoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "(S)-alpha-Amino-beta-hydroxypropionic acid" RELATED [HMDB] +synonym: "(S)-serine" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "105.043" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "105.09262" RELATED MASS [ChEBI] +synonym: "beta-Hydroxy-L-alanine" RELATED [HMDB] +synonym: "beta-Hydroxyalanine" RELATED [HMDB] +synonym: "C3H7NO3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-(-)-serine" RELATED [NIST_Chemistry_WebBook] +synonym: "L-2-Amino-3-hydroxypropionic acid" RELATED [KEGG_COMPOUND] +synonym: "L-3-Hydroxy-2-aminopropionic acid" RELATED [HMDB] +synonym: "L-3-Hydroxy-alanine" RELATED [KEGG_COMPOUND] +synonym: "L-Ser" RELATED [DrugBank] +synonym: "L-Serin" RELATED [ChEBI] +synonym: "L-Serine" EXACT [KEGG_COMPOUND] +synonym: "L-serine" EXACT IUPAC_NAME [IUPAC] +synonym: "MTCFGRXMJLQNBG-REOHCLBHSA-N" RELATED InChIKey [ChEBI] +synonym: "N[C@@H](CO)C(O)=O" RELATED SMILES [ChEBI] +synonym: "S" RELATED [ChEBI] +synonym: "Ser" RELATED [ChEBI] +synonym: "SERINE" RELATED [PDBeChem] +synonym: "Serine" RELATED [KEGG_COMPOUND] +xref: Beilstein:1721404 "Beilstein" +xref: CAS:56-45-1 "NIST Chemistry WebBook" +xref: Drug_Central:4127 "DrugCentral" +xref: DrugBank:DB00133 +xref: ECMDB:ECMDB00187 +xref: Gmelin:2570 "Gmelin" +xref: HMDB:HMDB00187 +xref: KEGG:C00065 +xref: KEGG:D00016 +xref: KNApSAcK:C00001393 +xref: MetaCyc:SER +xref: PDBeChem:SER +xref: PMID:1650428 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:19062365 "Europe PMC" +xref: PMID:21956576 "Europe PMC" +xref: PMID:22265470 "Europe PMC" +xref: PMID:22393170 "Europe PMC" +xref: PMID:22547037 "Europe PMC" +xref: PMID:22566084 "Europe PMC" +xref: PMID:22566694 "Europe PMC" +xref: Reaxys:1721404 "Reaxys" +xref: Wikipedia:L-serine +xref: YMDB:YMDB00112 +is_a: CHEBI:17822 ! serine +is_a: CHEBI:26650 ! serine family amino acid +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_acid_of CHEBI:32836 ! L-serinate +relationship: is_conjugate_base_of CHEBI:32837 ! L-serinium +relationship: is_enantiomer_of CHEBI:16523 ! D-serine +relationship: is_tautomer_of CHEBI:33384 ! L-serine zwitterion + +[Term] +id: CHEBI:17120 +name: hexanoate +namespace: chebi_ontology +alt_id: CHEBI:14398 +alt_id: CHEBI:24569 +def: "A short-chain fatty acid anion that is the conjugate base of hexanoic acid (also known as caproic acid)." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "1-hexanoate" RELATED [ChEBI] +synonym: "1-pentacarboxylate" RELATED [ChEBI] +synonym: "1-pentanecarboxylate" RELATED [ChEBI] +synonym: "115.076" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "115.15034" RELATED MASS [ChEBI] +synonym: "butylacetate" RELATED [ChEBI] +synonym: "C6H11O2" RELATED FORMULA [ChEBI] +synonym: "caproate" RELATED [ChEBI] +synonym: "capronate" RELATED [ChEBI] +synonym: "CCCCCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "CH3-[CH2]4-COO(-)" RELATED [IUPAC] +synonym: "FUZZWVXGSFPDMH-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "hexanoate" EXACT [UniProt] +synonym: "hexanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "hexoate" RELATED [ChEBI] +synonym: "hexylate" RELATED [ChEBI] +synonym: "InChI=1S/C6H12O2/c1-2-3-4-5-6(7)8/h2-5H2,1H3,(H,7,8)/p-1" RELATED InChI [ChEBI] +synonym: "n-caproate" RELATED [ChEBI] +synonym: "n-hexanoate" RELATED [ChEBI] +synonym: "n-hexoate" RELATED [ChEBI] +synonym: "n-hexylate" RELATED [ChEBI] +synonym: "nPnCO2 anion" RELATED [NIST_Chemistry_WebBook] +synonym: "pentanecarboxylate" RELATED [ChEBI] +synonym: "pentylformate" RELATED [ChEBI] +xref: Beilstein:3601453 "Beilstein" +xref: CAS:151-33-7 "Beilstein" +xref: ECMDB:ECMDB21229 +xref: Gmelin:326340 "Gmelin" +xref: KEGG:C01585 "ChEBI" +xref: MetaCyc:HEXANOATE +is_a: CHEBI:58951 ! short-chain fatty acid anion +is_a: CHEBI:58954 ! straight-chain saturated fatty acid anion +is_a: CHEBI:78116 ! fatty acid anion 6:0 +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:30776 ! hexanoic acid + +[Term] +id: CHEBI:17126 +name: carnitine +namespace: chebi_ontology +alt_id: CHEBI:11817 +alt_id: CHEBI:13947 +alt_id: CHEBI:20047 +alt_id: CHEBI:23038 +def: "An amino-acid betaine that is butanoate substituted with a hydroxy group at position C-3 and a trimethylammonium group at C-4." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "161.105" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "161.19894" RELATED MASS [ChEBI] +synonym: "3-hydroxy-4-(trimethylammonio)butanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "C7H15NO3" RELATED FORMULA [ChEBI] +synonym: "C[N+](C)(C)CC(O)CC([O-])=O" RELATED SMILES [ChEBI] +synonym: "carnitine" EXACT [UniProt] +synonym: "D,L-carnitine" RELATED [MetaCyc] +synonym: "InChI=1S/C7H15NO3/c1-8(2,3)5-6(9)4-7(10)11/h6,9H,4-5H2,1-3H3" RELATED InChI [ChEBI] +synonym: "PHIQHXFUZVPYII-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1866665 "Beilstein" +xref: CAS:461-06-3 "ChemIDplus" +xref: DrugBank:DB02648 +xref: KEGG:C00487 "ChEBI" +xref: MetaCyc:DL-CARNITINE +xref: Patent:US4255449 +xref: Patent:US4315944 +xref: PMID:22770225 "Europe PMC" +xref: PMID:23868375 "Europe PMC" +xref: Reaxys:1866665 "Reaxys" +xref: Wikipedia:Carnitine +is_a: CHEBI:22860 ! amino-acid betaine +relationship: has_functional_parent CHEBI:17968 ! butyrate +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:3424 ! carnitinium + +[Term] +id: CHEBI:17137 +name: hydrogensulfite +namespace: chebi_ontology +alt_id: CHEBI:13367 +alt_id: CHEBI:5598 +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "80.965" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "81.07214" RELATED MASS [ChEBI] +synonym: "[SO2(OH)](-)" RELATED [IUPAC] +synonym: "Bisulfite" RELATED [KEGG_COMPOUND] +synonym: "bisulfite" RELATED [ChemIDplus] +synonym: "bisulphite" RELATED [ChemIDplus] +synonym: "HO3S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "HSO3(-)" RELATED [IUPAC] +synonym: "HSO3-" RELATED [KEGG_COMPOUND] +synonym: "Hydrogen sulfite" RELATED [KEGG_COMPOUND] +synonym: "hydrogen sulfite(1-)" RELATED [ChemIDplus] +synonym: "hydrogen(trioxidosulfate)(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogensulfite(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogentrioxosulfate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogentrioxosulfate(IV)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrosulfite anion" RELATED [ChemIDplus] +synonym: "hydroxidodioxidosulfate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H2O3S/c1-4(2)3/h(H2,1,2,3)/p-1" RELATED InChI [ChEBI] +synonym: "LSNNMFCWUKXFEE-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "monohydrogentrioxosulfate" EXACT IUPAC_NAME [IUPAC] +synonym: "OS([O-])=O" RELATED SMILES [ChEBI] +xref: CAS:15181-46-1 "ChemIDplus" +xref: Gmelin:1455 "Gmelin" +xref: KEGG:C11481 +xref: PDBeChem:SO3 +is_a: CHEBI:33482 ! sulfur oxoanion +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:17359 ! sulfite +relationship: is_conjugate_base_of CHEBI:48854 ! sulfurous acid + +[Term] +id: CHEBI:17146 +name: anhydrotetracycline +namespace: chebi_ontology +alt_id: CHEBI:13833 +alt_id: CHEBI:22559 +alt_id: CHEBI:2728 +subset: 3_STAR +synonym: "(4S,4aS,12aS)-4-(dimethylamino)-3,10,11,12a-tetrahydroxy-6-methyl-1,12-dioxo-1,4,4a,5,12,12a-hexahydrotetracene-2-carboxamide" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "426.143" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "426.41936" RELATED MASS [ChEBI] +synonym: "[H][C@@]12Cc3c(C)c4cccc(O)c4c(O)c3C(=O)[C@]1(O)C(=O)C(C(N)=O)=C(O)[C@H]2N(C)C" RELATED SMILES [ChEBI] +synonym: "Anhydrotetracycline" EXACT [KEGG_COMPOUND] +synonym: "C22H22N2O7" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CXCVEERYMJZMMM-DOCRCCHOSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C22H22N2O7/c1-8-9-5-4-6-12(25)13(9)17(26)14-10(8)7-11-16(24(2)3)18(27)15(21(23)30)20(29)22(11,31)19(14)28/h4-6,11,16,25-27,31H,7H2,1-3H3,(H2,23,30)/t11-,16-,22-/m0/s1" RELATED InChI [ChEBI] +xref: colombos:ANHYDROTETRACYCLIN +xref: KEGG:C02811 +xref: PDBeChem:TDC +is_a: CHEBI:26895 ! tetracyclines +relationship: is_tautomer_of CHEBI:58032 ! anhydrotetracycline zwitterion + +[Term] +id: CHEBI:17148 +name: putrescine +namespace: chebi_ontology +alt_id: CHEBI:14972 +alt_id: CHEBI:26405 +alt_id: CHEBI:45092 +alt_id: CHEBI:8650 +def: "A four-carbon alkane-alpha,omega-diamine. It is obtained by the breakdown of amino acids and is responsible for the foul odour of putrefying flesh." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,4-Butanediamine" RELATED [KEGG_COMPOUND] +synonym: "1,4-butylenediamine" RELATED [ChemIDplus] +synonym: "1,4-DIAMINOBUTANE" RELATED [PDBeChem] +synonym: "1,4-tetramethylenediamine" RELATED [NIST_Chemistry_WebBook] +synonym: "88.100" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "88.15150" RELATED MASS [ChEBI] +synonym: "Butane-1,4-diamine" RELATED [KEGG_COMPOUND] +synonym: "butane-1,4-diamine" EXACT IUPAC_NAME [IUPAC] +synonym: "butylenediamine" RELATED [ChemIDplus] +synonym: "C4H12N2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "H2N(CH2)4NH2" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/C4H12N2/c5-3-1-2-4-6/h1-6H2" RELATED InChI [ChEBI] +synonym: "KIDHWZJUCRJVML-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "NCCCCN" RELATED SMILES [ChEBI] +synonym: "Putrescin" RELATED [ChEBI] +synonym: "putrescina" RELATED [ChEBI] +synonym: "Putrescine" EXACT [KEGG_COMPOUND] +synonym: "Putreszin" RELATED [ChEBI] +synonym: "Tetramethylendiamin" RELATED [ChEBI] +synonym: "Tetramethylenediamine" RELATED [KEGG_COMPOUND] +xref: Beilstein:605282 "Beilstein" +xref: CAS:110-60-1 "ChemIDplus" +xref: DrugBank:DB01917 +xref: ECMDB:ECMDB01414 +xref: Gmelin:1715 "Gmelin" +xref: HMDB:HMDB01414 +xref: KEGG:C00134 +xref: KNApSAcK:C00001428 +xref: MetaCyc:PUTRESCINE +xref: PDBeChem:PUT +xref: PMID:12053479 "Europe PMC" +xref: PMID:15453685 "Europe PMC" +xref: PMID:16346523 "Europe PMC" +xref: PMID:18721677 "Europe PMC" +xref: PMID:22735334 "Europe PMC" +xref: PMID:24331418 "Europe PMC" +xref: PMID:24820075 "Europe PMC" +xref: PMID:24864091 "Europe PMC" +xref: Reaxys:605282 "Reaxys" +xref: Wikipedia:Putrescine +xref: YMDB:YMDB00132 +is_a: CHEBI:35411 ! alkane-alpha,omega-diamine +relationship: has_role CHEBI:22586 ! antioxidant +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:326268 ! 1,4-butanediammonium + +[Term] +id: CHEBI:17158 +name: methylglyoxal +namespace: chebi_ontology +alt_id: CHEBI:11643 +alt_id: CHEBI:14599 +alt_id: CHEBI:25303 +alt_id: CHEBI:6875 +def: "A 2-oxo aldehyde derived from propanal." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,2-propanedione" RELATED [NIST_Chemistry_WebBook] +synonym: "2-Ketopropionaldehyde" RELATED [KEGG_COMPOUND] +synonym: "2-Oxopropanal" RELATED [KEGG_COMPOUND] +synonym: "2-oxopropanal" EXACT IUPAC_NAME [IUPAC] +synonym: "2-oxopropanal" RELATED [UniProt] +synonym: "2-oxopropionaldehyde" RELATED [ChemIDplus] +synonym: "72.021" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "72.06266" RELATED MASS [ChEBI] +synonym: "[H]C(=O)C(C)=O" RELATED SMILES [ChEBI] +synonym: "acetylformaldehyde" RELATED [ChemIDplus] +synonym: "acetylformyl" RELATED [NIST_Chemistry_WebBook] +synonym: "AIJULSRZWUXGPQ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "alpha-ketopropionaldehyde" RELATED [NIST_Chemistry_WebBook] +synonym: "C3H4O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CH3COCHO" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/C3H4O2/c1-3(5)2-4/h2H,1H3" RELATED InChI [ChEBI] +synonym: "Methylglyoxal" EXACT [KEGG_COMPOUND] +synonym: "Pyruvaldehyde" RELATED [KEGG_COMPOUND] +synonym: "Pyruvic aldehyde" RELATED [KEGG_COMPOUND] +xref: Beilstein:906750 "Beilstein" +xref: CAS:78-98-8 "KEGG COMPOUND" +xref: KEGG:C00546 +xref: KNApSAcK:C00007562 +xref: PMID:10373458 "Europe PMC" +xref: PMID:10723098 "Europe PMC" +xref: PMID:11504881 "Europe PMC" +xref: PMID:15520007 "Europe PMC" +xref: PMID:17103372 "Europe PMC" +xref: PMID:19202315 "Europe PMC" +xref: PMID:20096340 "Europe PMC" +xref: PMID:22983866 "Europe PMC" +xref: PMID:23543734 "Europe PMC" +xref: PMID:23845007 "Europe PMC" +xref: PMID:24040205 "Europe PMC" +xref: PMID:24168114 "Europe PMC" +xref: PMID:26861824 "Europe PMC" +xref: PMID:9506998 "Europe PMC" +xref: Reaxys:906750 "Reaxys" +xref: Wikipedia:Methylglyoxal +is_a: CHEBI:26282 ! propanals +is_a: CHEBI:27659 ! 2-oxo aldehyde +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:17188 +name: nucleoside 5'-monophosphate +namespace: chebi_ontology +alt_id: CHEBI:14676 +alt_id: CHEBI:25607 +alt_id: CHEBI:7439 +alt_id: CHEBI:7653 +alt_id: CHEBI:7654 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "213.016" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "C5H10O7PR" RELATED FORMULA [ChEBI] +synonym: "NMP" RELATED [KEGG_COMPOUND] +synonym: "Nucleoside monophosphate" RELATED [KEGG_COMPOUND] +synonym: "nucleoside monophosphate" RELATED [ChEBI] +synonym: "nucleoside monophosphates" RELATED [ChEBI] +synonym: "Nucleoside phosphate" RELATED [KEGG_COMPOUND] +synonym: "O[C@H]1[C@H]([*])O[C@H](COP(O)(O)=O)[C@H]1O" RELATED SMILES [ChEBI] +xref: KEGG:C01329 +xref: KEGG:C02520 +is_a: CHEBI:25608 ! nucleoside phosphate +relationship: is_conjugate_acid_of CHEBI:58043 ! nucleoside 5'-monophosphate(2-) + +[Term] +id: CHEBI:17196 +name: L-asparagine +namespace: chebi_ontology +alt_id: CHEBI:13083 +alt_id: CHEBI:21242 +alt_id: CHEBI:40902 +alt_id: CHEBI:6191 +def: "An optically active form of asparagine having L-configuration." [] +subset: 3_STAR +synonym: "(2S)-2,4-diamino-4-oxobutanoic acid" RELATED [IUPAC] +synonym: "(2S)-2-amino-3-carbamoylpropanoic acid" RELATED [JCBN] +synonym: "(S)-2-amino-3-carbamoylpropanoic acid" RELATED [ChEBI] +synonym: "(S)-Asparagine" RELATED [DrugBank] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "132.053" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "132.11800" RELATED MASS [ChEBI] +synonym: "2-Aminosuccinamic acid" RELATED [KEGG_COMPOUND] +synonym: "alpha-aminosuccinamic acid" RELATED [ChemIDplus] +synonym: "Asn" RELATED [NIST_Chemistry_WebBook] +synonym: "ASPARAGINE" RELATED [PDBeChem] +synonym: "Aspartamic acid" RELATED [DrugBank] +synonym: "C4H8N2O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "DCXYFEDJOCDNAF-REOHCLBHSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-2-aminosuccinamic acid" RELATED [ChemIDplus] +synonym: "L-Asparagin" RELATED [ChEBI] +synonym: "L-Asparagine" EXACT [KEGG_COMPOUND] +synonym: "L-asparagine" EXACT IUPAC_NAME [IUPAC] +synonym: "L-aspartic acid beta-amide" RELATED [ChEBI] +synonym: "N" RELATED [NIST_Chemistry_WebBook] +synonym: "N[C@@H](CC(N)=O)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:1723527 "Beilstein" +xref: CAS:70-47-3 "NIST Chemistry WebBook" +xref: Drug_Central:4126 "DrugCentral" +xref: DrugBank:DB00174 +xref: ECMDB:ECMDB00168 +xref: Gmelin:3334 "Gmelin" +xref: HMDB:HMDB00168 +xref: KEGG:C00152 +xref: KNApSAcK:C00001341 +xref: MetaCyc:ASN +xref: PDBeChem:ASN +xref: PMID:12142634 "Europe PMC" +xref: PMID:15907185 "Europe PMC" +xref: PMID:16190636 "Europe PMC" +xref: PMID:16368161 "Europe PMC" +xref: PMID:16668324 "Europe PMC" +xref: PMID:17497286 "Europe PMC" +xref: PMID:21800258 "Europe PMC" +xref: PMID:21854356 "Europe PMC" +xref: PMID:22513289 "Europe PMC" +xref: Reaxys:1723527 "Reaxys" +xref: Wikipedia:Asparagine +xref: YMDB:YMDB00226 +is_a: CHEBI:22653 ! asparagine +is_a: CHEBI:22658 ! aspartate family amino acid +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:32650 ! L-asparaginate +relationship: is_conjugate_base_of CHEBI:32651 ! L-asparaginium +relationship: is_enantiomer_of CHEBI:28159 ! D-asparagine +relationship: is_tautomer_of CHEBI:58048 ! L-asparagine zwitterion + +[Term] +id: CHEBI:17230 +name: homocysteine +namespace: chebi_ontology +alt_id: CHEBI:14408 +alt_id: CHEBI:5751 +def: "A sulfur-containing amino acid consisting of a glycine core with a 2-mercaptoethyl side-chain." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "135.035" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "135.18580" RELATED MASS [ChEBI] +synonym: "2-Amino-4-mercaptobutyric acid" RELATED [KEGG_COMPOUND] +synonym: "2-amino-4-sulfanylbutanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "C4H9NO2S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "FFFHZYDWPBMWHY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Hcy" RELATED [IUPAC] +synonym: "Homocysteine" EXACT [KEGG_COMPOUND] +synonym: "homocysteine" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C4H9NO2S/c5-3(1-2-8)4(6)7/h3,8H,1-2,5H2,(H,6,7)" RELATED InChI [ChEBI] +synonym: "NC(CCS)C(O)=O" RELATED SMILES [ChEBI] +xref: HMDB:HMDB00742 +xref: KEGG:C05330 +xref: PMID:11133260 "Europe PMC" +xref: PMID:16596805 "Europe PMC" +xref: PMID:18370634 "Europe PMC" +xref: Wikipedia:Homocysteine +is_a: CHEBI:24610 ! homocysteines +is_a: CHEBI:26834 ! sulfur-containing amino acid +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:66952 ! homocysteinate +relationship: is_tautomer_of CHEBI:58065 ! homocysteine zwitterion + +[Term] +id: CHEBI:17234 +name: glucose +namespace: chebi_ontology +alt_id: CHEBI:14313 +alt_id: CHEBI:24277 +alt_id: CHEBI:33929 +alt_id: CHEBI:5418 +def: "An aldohexose used as a source of energy and metabolic intermediate." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "180.15588" RELATED MASS [ChEBI] +synonym: "C6H12O6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "DL-glucose" RELATED [ChEBI] +synonym: "Glc" RELATED [JCBN] +synonym: "gluco-hexose" EXACT IUPAC_NAME [IUPAC] +synonym: "Glucose" EXACT [KEGG_COMPOUND] +synonym: "glucose" EXACT IUPAC_NAME [IUPAC] +synonym: "Glukose" RELATED [ChEBI] +xref: CAS:50-99-7 "KEGG COMPOUND" +xref: colombos:GLUCOSE +xref: KEGG:C00293 +xref: Wikipedia:Glucose +is_a: CHEBI:33917 ! aldohexose +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: MCO:0000858 MCO:0000864 ! sucrose 15% carbon source + +[Term] +id: CHEBI:17258 +name: 7H-purine +namespace: chebi_ontology +alt_id: CHEBI:14968 +alt_id: CHEBI:8639 +def: "The 7H-tautomer of purine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "120.044" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "120.11222" RELATED MASS [ChEBI] +synonym: "7H-purine" EXACT IUPAC_NAME [IUPAC] +synonym: "c1ncc2[nH]cnc2n1" RELATED SMILES [ChEBI] +synonym: "C5H4N4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9)" RELATED InChI [ChEBI] +synonym: "KDCGOANMDULRCW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Purine" RELATED [KEGG_COMPOUND] +synonym: "purine" RELATED [UniProt] +synonym: "Purine base" RELATED [KEGG_COMPOUND] +xref: Beilstein:3200 "Beilstein" +xref: Gmelin:601779 "Gmelin" +xref: HMDB:HMDB01366 +xref: KEGG:C15587 +xref: Reaxys:3200 "Reaxys" +is_a: CHEBI:35584 ! purine +relationship: is_tautomer_of CHEBI:35586 ! 1H-purine +relationship: is_tautomer_of CHEBI:35588 ! 3H-purine +relationship: is_tautomer_of CHEBI:35589 ! 9H-purine + +[Term] +id: CHEBI:17272 +name: propionate +namespace: chebi_ontology +alt_id: CHEBI:14903 +alt_id: CHEBI:26290 +def: "The conjugate base of propionic acid; a key precursor in lipid biosynthesis." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "73.029" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "73.07060" RELATED MASS [ChEBI] +synonym: "C3H5O2" RELATED FORMULA [ChEBI] +synonym: "carboxylatoethane" RELATED [ChEBI] +synonym: "CCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "CH3-CH2-COO(-)" RELATED [IUPAC] +synonym: "EtCO2 anion" RELATED [NIST_Chemistry_WebBook] +synonym: "ethanecarboxylate" RELATED [ChEBI] +synonym: "ethylformate" RELATED [ChEBI] +synonym: "InChI=1S/C3H6O2/c1-2-3(4)5/h2H2,1H3,(H,4,5)/p-1" RELATED InChI [ChEBI] +synonym: "metacetonate" RELATED [ChEBI] +synonym: "methylacetate" RELATED [ChEBI] +synonym: "propanate" RELATED [ChEBI] +synonym: "propanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "propanoate" RELATED [UniProt] +synonym: "propanoic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "propionate" EXACT [IUPAC] +synonym: "pseudoacetate" RELATED [ChEBI] +synonym: "XBDQKXXYIPTUBI-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3587503 "Beilstein" +xref: CAS:72-03-7 "NIST Chemistry WebBook" +xref: Gmelin:1820 "Gmelin" +xref: KEGG:C00163 "ChEBI" +xref: PMID:17951291 "Europe PMC" +xref: PMID:18375549 "Europe PMC" +xref: PMID:2647392 "Europe PMC" +xref: UM-BBD_compID:c0277 "ChEBI" +is_a: CHEBI:78113 ! fatty acid anion 3:0 +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:30768 ! propionic acid + +[Term] +id: CHEBI:17289 +name: homoserine lactone +namespace: chebi_ontology +alt_id: CHEBI:1017 +alt_id: CHEBI:11522 +alt_id: CHEBI:19468 +alt_id: CHEBI:30656 +def: "A butan-4-olide having an amino substituent at the 2-position." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "101.048" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "101.10392" RELATED MASS [ChEBI] +synonym: "2-Aminobutan-4-olide" RELATED [KEGG_COMPOUND] +synonym: "3-amino-4,5-dihydrofuran-2(3H)-one" EXACT IUPAC_NAME [IUPAC] +synonym: "alpha-amino-gamma-butyrolactone" RELATED [ChEBI] +synonym: "C4H7NO2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Homoserine lactone" EXACT [KEGG_COMPOUND] +synonym: "homoserine lactone" EXACT IUPAC_NAME [IUPAC] +synonym: "HSL" RELATED [ChEBI] +synonym: "Hsl" RELATED [IUPAC] +synonym: "HSLs" RELATED [ChEBI] +synonym: "InChI=1S/C4H7NO2/c5-3-1-2-7-4(3)6/h3H,1-2,5H2" RELATED InChI [ChEBI] +synonym: "NC1CCOC1=O" RELATED SMILES [ChEBI] +synonym: "QJPWUUJVYOJNMH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:80584 "Beilstein" +xref: CAS:1192-20-7 "ChemIDplus" +xref: DrugBank:DB02624 +xref: KEGG:C02926 +xref: MetaCyc:HOMOSERINE-LACTONE +xref: PMID:7545940 "Europe PMC" +xref: Reaxys:80584 "Reaxys" +is_a: CHEBI:22950 ! butan-4-olide +is_a: CHEBI:50994 ! primary amino compound +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_base_of CHEBI:58093 ! homoserinium lactone + +[Term] +id: CHEBI:17296 +name: aniline +namespace: chebi_ontology +alt_id: CHEBI:13834 +alt_id: CHEBI:22561 +alt_id: CHEBI:2732 +alt_id: CHEBI:40796 +def: "A primary arylamine in which an amino functional group is substituted for one of the benzene hydrogens." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "93.058" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "93.12650" RELATED MASS [ChEBI] +synonym: "aminobenzene" RELATED [ChemIDplus] +synonym: "aminophen" RELATED [ChemIDplus] +synonym: "Anilin" RELATED [NIST_Chemistry_WebBook] +synonym: "ANILINE" EXACT [PDBeChem] +synonym: "Aniline" EXACT [KEGG_COMPOUND] +synonym: "aniline" EXACT [UniProt] +synonym: "aniline" EXACT IUPAC_NAME [IUPAC] +synonym: "Benzenamine" RELATED [KEGG_COMPOUND] +synonym: "benzeneamine" RELATED [NIST_Chemistry_WebBook] +synonym: "C6H7N" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C6H7N/c7-6-4-2-1-3-5-6/h1-5H,7H2" RELATED InChI [ChEBI] +synonym: "kyanol" RELATED [NIST_Chemistry_WebBook] +synonym: "Nc1ccccc1" RELATED SMILES [ChEBI] +synonym: "PAYRUJLWNCNPSJ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Phenylamine" RELATED [KEGG_COMPOUND] +xref: Beilstein:605631 "Beilstein" +xref: CAS:62-53-3 "ChemIDplus" +xref: DrugBank:DB06728 +xref: Gmelin:2796 "Gmelin" +xref: HMDB:HMDB03012 +xref: KEGG:C00292 +xref: MetaCyc:ANILINE +xref: PDBeChem:ANL +xref: PMID:11304127 "Europe PMC" +xref: PMID:17135213 "Europe PMC" +xref: PMID:23821252 "Europe PMC" +xref: PMID:3779628 "Europe PMC" +xref: PMID:6205897 "Europe PMC" +xref: Reaxys:605631 "Reaxys" +xref: Wikipedia:Aniline +is_a: CHEBI:22562 ! anilines +is_a: CHEBI:50471 ! primary arylamine + +[Term] +id: CHEBI:17301 +name: glucaric acid +namespace: chebi_ontology +alt_id: CHEBI:24258 +alt_id: CHEBI:5393 +def: "A hexaric acid derived by oxidation of sugar such as glucose with nitric acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "210.13880" RELATED MASS [ChEBI] +synonym: "C6H10O8" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Glucaric acid" EXACT [KEGG_COMPOUND] +synonym: "glucaric acid" EXACT IUPAC_NAME [IUPAC] +synonym: "glucosaccharic acid" RELATED [ChemIDplus] +synonym: "saccharic acid" RELATED [ChEBI] +synonym: "tetrahydroxyadipic acid" RELATED [ChemIDplus] +xref: Beilstein:1728123 "Beilstein" +xref: CAS:25525-21-7 "ChemIDplus" +xref: DrugBank:DB03603 +xref: HMDB:HMDB00663 +xref: KEGG:C00767 +xref: PMID:6526537 "Europe PMC" +xref: Reaxys:1728123 "Reaxys" +is_a: CHEBI:24577 ! hexaric acid +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:35392 ! glucarate(1-) + +[Term] +id: CHEBI:17306 +name: maltose +namespace: chebi_ontology +alt_id: CHEBI:14568 +alt_id: CHEBI:25144 +alt_id: CHEBI:6668 +def: "A glycosylglucose consisting of two D-glucopyranose units connected by an alpha-(1->4)-linkage." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-alpha-D-Glucopyranosyl-4-alpha-D-glucopyranose" RELATED [KEGG_COMPOUND] +synonym: "342.116" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "342.29648" RELATED MASS [ChEBI] +synonym: "4-(alpha-D-glucopyranosido)-alpha-glucopyranose" RELATED [NIST_Chemistry_WebBook] +synonym: "4-(alpha-D-glucosido)-D-glucose" RELATED [NIST_Chemistry_WebBook] +synonym: "4-O-alpha-D-glucopyranosyl-D-glucopyranose" RELATED [IUPAC] +synonym: "4-O-alpha-D-glucopyranosyl-D-glucose" RELATED [NIST_Chemistry_WebBook] +synonym: "alpha-D-Glcp-(1->4)-D-Glcp" RELATED [IUPAC] +synonym: "alpha-D-Glucopyranosyl-(1->4)-D-glucopyranose" RELATED [KEGG_COMPOUND] +synonym: "alpha-D-glucopyranosyl-(1->4)-D-glucopyranose" EXACT IUPAC_NAME [IUPAC] +synonym: "alpha-D-glucopyranosyl-(1->4)-D-glucose" EXACT IUPAC_NAME [IUPAC] +synonym: "alpha-malt sugar" RELATED [NIST_Chemistry_WebBook] +synonym: "C12H22O11" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cextromaltose" RELATED [NIST_Chemistry_WebBook] +synonym: "D-(+)-maltose" RELATED [ChemIDplus] +synonym: "D-maltose" RELATED [NIST_Chemistry_WebBook] +synonym: "GUBGYTABKSRVRQ-PICCSMPSSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C12H22O11/c13-1-3-5(15)6(16)9(19)12(22-3)23-10-4(2-14)21-11(20)8(18)7(10)17/h3-20H,1-2H2/t3-,4-,5-,6+,7-,8-,9-,10-,11?,12-/m1/s1" RELATED InChI [ChEBI] +synonym: "Malt sugar" RELATED [KEGG_COMPOUND] +synonym: "maltobiose" RELATED [NIST_Chemistry_WebBook] +synonym: "Maltose" EXACT [KEGG_COMPOUND] +synonym: "maltose" EXACT [UniProt] +synonym: "Malzzucker" RELATED [ChEBI] +synonym: "OC[C@H]1O[C@H](O[C@@H]2[C@@H](CO)OC(O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +xref: Beilstein:1292747 "Beilstein" +xref: CAS:69-79-4 "NIST Chemistry WebBook" +xref: DrugBank:DB03323 +xref: KEGG:C00208 +xref: KEGG:D00044 +xref: KEGG:G00275 +xref: KNApSAcK:C00001140 +xref: PMID:16332759 "Europe PMC" +xref: PMID:17723085 "Europe PMC" +xref: PMID:22094343 "Europe PMC" +xref: PMID:22185612 "Europe PMC" +xref: PMID:22246222 "Europe PMC" +xref: PMID:22252265 "Europe PMC" +xref: PMID:22411612 "Europe PMC" +xref: PMID:22424089 "Europe PMC" +xref: PMID:22451670 "Europe PMC" +xref: PMID:22469630 "Europe PMC" +xref: PMID:22529943 "Europe PMC" +xref: PMID:22573161 "Europe PMC" +xref: PMID:22669197 "Europe PMC" +xref: Reaxys:1292747 "Reaxys" +xref: Wikipedia:Maltose +is_a: CHEBI:17593 ! maltooligosaccharide +is_a: CHEBI:24405 ! glycosylglucose +relationship: has_role CHEBI:50505 ! sweetening agent +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:17315 +name: D-glucosamine +namespace: chebi_ontology +alt_id: CHEBI:12961 +def: "An amino sugar whose structure comprises D-glucose having an amino substituent at position 2." [] +subset: 3_STAR +synonym: "2-amino-2-deoxy-D-glucose" EXACT IUPAC_NAME [IUPAC] +synonym: "2-amino-D-2-deoxyglucose" RELATED [ChEBI] +synonym: "2-deoxy-2-amino-D-glucose" RELATED [ChEBI] +synonym: "C6H13NO5" RELATED FORMULA [ChEBI] +synonym: "D-GlcN" RELATED [JCBN] +synonym: "D-glucosamine" EXACT IUPAC_NAME [IUPAC] +xref: HMDB:HMDB01514 +xref: PMID:19067146 "Europe PMC" +xref: PMID:59831 "Europe PMC" +xref: Reaxys:1724602 "Reaxys" +is_a: CHEBI:5417 ! glucosamine +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:17326 +name: nucleoside triphosphate +namespace: chebi_ontology +alt_id: CHEBI:13411 +alt_id: CHEBI:14677 +alt_id: CHEBI:25610 +alt_id: CHEBI:7442 +alt_id: CHEBI:7655 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "372.949" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "388.09680" RELATED MASS [ChEBI] +synonym: "C5H12O13P3R" RELATED FORMULA [ChEBI] +synonym: "C[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "NTP" RELATED [KEGG_COMPOUND] +synonym: "Nucleoside triphosphate" EXACT [KEGG_COMPOUND] +synonym: "nucleoside triphosphates" RELATED [ChEBI] +xref: KEGG:C00201 +is_a: CHEBI:25608 ! nucleoside phosphate +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: is_conjugate_acid_of CHEBI:58104 ! nucleoside triphosphate(3-) + +[Term] +id: CHEBI:17334 +name: penicillin +namespace: chebi_ontology +alt_id: CHEBI:14742 +alt_id: CHEBI:25869 +alt_id: CHEBI:7961 +def: "Any member of the group of substituted penams containing two methyl substituents at position 2, a carboxylate substituent at position 3 and a carboxamido group at position 6." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "243.044" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "243.26000" RELATED MASS [ChEBI] +synonym: "[H][C@]12SC(C)(C)[C@@H](N1C(=O)[C@H]2NC([*])=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C9H11N2O4SR" RELATED FORMULA [ChEBI] +synonym: "Penicillin" EXACT [KEGG_COMPOUND] +synonym: "penicillins" EXACT IUPAC_NAME [IUPAC] +synonym: "penicillins" RELATED [ChEBI] +xref: KEGG:C00395 +xref: PMID:11851248 "Europe PMC" +xref: PMID:12833570 "Europe PMC" +xref: PMID:1502708 "Europe PMC" +xref: PMID:16033609 "Europe PMC" +xref: PMID:7061385 "Europe PMC" +xref: PMID:7798534 "Europe PMC" +xref: Wikipedia:Penicillin +is_a: CHEBI:25865 ! penicillanic acids +relationship: has_functional_parent CHEBI:16705 ! 6-aminopenicillanic acid +relationship: is_conjugate_acid_of CHEBI:51356 ! penicillinate anion + +[Term] +id: CHEBI:17348 +name: D-aldohexose 6-phosphate +namespace: chebi_ontology +alt_id: CHEBI:12991 +def: "Any D-aldose having a six-carbon chain with a phosphate group at C-6." [] +subset: 3_STAR +synonym: "6-O-phosphono-D-glycero-hexose" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H13O9P" RELATED FORMULA [ChEBI] +synonym: "D-glycero-hexose 6-(dihydrogen phosphate)" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:2559 ! aldohexose 6-phosphate +is_a: CHEBI:4195 ! D-hexose 6-phosphate + +[Term] +id: CHEBI:17359 +name: sulfite +namespace: chebi_ontology +alt_id: CHEBI:15139 +alt_id: CHEBI:45548 +def: "Sulfite is an inorganic anion, which is the conjugate base of hydrogen sulfite." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "79.957" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "80.06420" RELATED MASS [ChEBI] +synonym: "[O-]S([O-])=O" RELATED SMILES [ChEBI] +synonym: "[SO3](2-)" RELATED [IUPAC] +synonym: "InChI=1S/H2O3S/c1-4(2)3/h(H2,1,2,3)/p-2" RELATED InChI [ChEBI] +synonym: "LSNNMFCWUKXFEE-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "O3S" RELATED FORMULA [ChEBI] +synonym: "SO3" RELATED [ChEBI] +synonym: "SO3(2-)" RELATED [IUPAC] +synonym: "sulfite" EXACT IUPAC_NAME [IUPAC] +synonym: "sulfite" EXACT [UniProt] +synonym: "SULFITE ION" RELATED [PDBeChem] +synonym: "sulphite" RELATED [ChEBI] +synonym: "trioxidosulfate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxosulfate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxosulfate(IV)" EXACT IUPAC_NAME [IUPAC] +xref: CAS:14265-45-3 "ChemIDplus" +xref: Gmelin:1449 "Gmelin" +xref: PDBeChem:SO3 +is_a: CHEBI:33482 ! sulfur oxoanion +is_a: CHEBI:48154 ! sulfur oxide +is_a: CHEBI:79388 ! divalent inorganic anion +relationship: is_conjugate_base_of CHEBI:17137 ! hydrogensulfite + +[Term] +id: CHEBI:17368 +name: hypoxanthine +namespace: chebi_ontology +alt_id: CHEBI:14431 +alt_id: CHEBI:24762 +alt_id: CHEBI:43237 +alt_id: CHEBI:5841 +def: "A purine nucleobase that consists of purine bearing an oxo substituent at position 6." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,7-dihydro-6H-purin-6-one" EXACT IUPAC_NAME [IUPAC] +synonym: "136.039" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "136.11162" RELATED MASS [ChEBI] +synonym: "6(1H)-purinone" RELATED [NIST_Chemistry_WebBook] +synonym: "6-oxopurine" RELATED [NIST_Chemistry_WebBook] +synonym: "9H-purin-6(1H)-one" RELATED [NIST_Chemistry_WebBook] +synonym: "C5H4N4O" RELATED FORMULA [KEGG_COMPOUND] +synonym: "FDGQSTZJBFJUBT-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Hyp" RELATED [CBN] +synonym: "HYPOXANTHINE" EXACT [PDBeChem] +synonym: "Hypoxanthine" EXACT [KEGG_COMPOUND] +synonym: "hypoxanthine" EXACT [UniProt] +synonym: "InChI=1S/C5H4N4O/c10-5-3-4(7-1-6-3)8-2-9-5/h1-2H,(H2,6,7,8,9,10)" RELATED InChI [ChEBI] +synonym: "O=c1[nH]cnc2nc[nH]c12" RELATED SMILES [ChEBI] +synonym: "purin-6(1H)-one" RELATED [NIST_Chemistry_WebBook] +synonym: "Purine-6-ol" RELATED [KEGG_COMPOUND] +xref: Beilstein:5811 "Beilstein" +xref: CAS:68-94-0 "ChemIDplus" +xref: DrugBank:DB04076 +xref: ECMDB:ECMDB00157 +xref: Gmelin:464558 "Gmelin" +xref: HMDB:HMDB00157 +xref: KEGG:C00262 +xref: KNApSAcK:C00001502 +xref: MetaCyc:HYPOXANTHINE +xref: PDBeChem:HPA +xref: PMID:14253484 "Europe PMC" +xref: PMID:22735334 "Europe PMC" +xref: PMID:23400363 "Europe PMC" +xref: PMID:23670363 "Europe PMC" +xref: Reaxys:5811 "Reaxys" +xref: Wikipedia:Hypoxanthine +xref: YMDB:YMDB00555 +is_a: CHEBI:25810 ! oxopurine +is_a: CHEBI:26386 ! purine nucleobase +is_a: CHEBI:67142 ! nucleobase analogue +relationship: has_role CHEBI:78675 ! fundamental metabolite + +[Term] +id: CHEBI:17393 +name: D-allose +namespace: chebi_ontology +alt_id: CHEBI:12906 +alt_id: CHEBI:20900 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "180.15588" RELATED MASS [ChEBI] +synonym: "C6H12O6" RELATED FORMULA [ChEBI] +synonym: "D-All" RELATED [JCBN] +synonym: "D-allo-hexose" EXACT IUPAC_NAME [IUPAC] +synonym: "D-allose" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:17608 ! D-aldohexose +is_a: CHEBI:37690 ! allose + +[Term] +id: CHEBI:17418 +name: valeric acid +namespace: chebi_ontology +alt_id: CHEBI:113448 +alt_id: CHEBI:27263 +alt_id: CHEBI:27264 +alt_id: CHEBI:43606 +alt_id: CHEBI:44803 +alt_id: CHEBI:7980 +def: "A straight-chain saturated fatty acid containing five carbon atoms." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-butanecarboxylic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "1-butanecarboxylic acid" RELATED [ChemIDplus] +synonym: "102.068" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "102.068" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "102.13170" RELATED MASS [ChEBI] +synonym: "C5H10O2" RELATED FORMULA [ChEBI] +synonym: "CCCCC(O)=O" RELATED SMILES [ChEBI] +synonym: "CH3-[CH2]3-COOH" RELATED [IUPAC] +synonym: "InChI=1S/C5H10O2/c1-2-3-4-5(6)7/h2-4H2,1H3,(H,6,7)" RELATED InChI [ChEBI] +synonym: "n-BuCOOH" RELATED [ChEBI] +synonym: "n-Pentanoate" RELATED [KEGG_COMPOUND] +synonym: "n-pentanoic acid" RELATED [ChemIDplus] +synonym: "n-Valeric acid" RELATED [KEGG_COMPOUND] +synonym: "n-valeric acid" RELATED [ChemIDplus] +synonym: "NQPDZGIKBAWPEJ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Pentanoate" RELATED [KEGG_COMPOUND] +synonym: "PENTANOIC ACID" RELATED [PDBeChem] +synonym: "Pentanoic acid" RELATED [KEGG_COMPOUND] +synonym: "pentanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "pentoic acid" RELATED [ChEBI] +synonym: "propylacetic acid" RELATED [ChemIDplus] +synonym: "Valerate" RELATED [KEGG_COMPOUND] +synonym: "Valerianic acid" RELATED [KEGG_COMPOUND] +synonym: "Valeriansaeure" RELATED [ChEBI] +synonym: "Valeric acid" EXACT [KEGG_COMPOUND] +synonym: "valeric acid, normal" RELATED [ChemIDplus] +xref: Beilstein:969454 "Beilstein" +xref: CAS:109-52-4 "KEGG COMPOUND" +xref: DrugBank:DB02406 +xref: Gmelin:26714 "Gmelin" +xref: HMDB:HMDB00892 +xref: KEGG:C00803 +xref: KNApSAcK:C00001208 +xref: LIPID_MAPS_instance:LMFA01010005 "LIPID MAPS" +xref: PDBeChem:PEI +xref: PMID:20507156 "Europe PMC" +xref: Reaxys:969454 "Reaxys" +is_a: CHEBI:26666 ! short-chain fatty acid +is_a: CHEBI:39418 ! straight-chain saturated fatty acid +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: is_conjugate_acid_of CHEBI:31011 ! valerate + +[Term] +id: CHEBI:17478 +name: aldehyde +namespace: chebi_ontology +alt_id: CHEBI:13432 +alt_id: CHEBI:13753 +alt_id: CHEBI:13805 +alt_id: CHEBI:13806 +alt_id: CHEBI:22291 +alt_id: CHEBI:2554 +alt_id: CHEBI:8750 +def: "A compound RC(=O)H, in which a carbonyl group is bonded to one hydrogen atom and to one R group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "29.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "29.01800" RELATED MASS [ChEBI] +synonym: "[H]C([*])=O" RELATED SMILES [ChEBI] +synonym: "aldehido" RELATED [ChEBI] +synonym: "aldehidos" RELATED [ChEBI] +synonym: "Aldehyd" RELATED [ChEBI] +synonym: "Aldehyde" EXACT [KEGG_COMPOUND] +synonym: "aldehyde" EXACT [ChEBI] +synonym: "aldehyde" EXACT IUPAC_NAME [IUPAC] +synonym: "aldehydes" EXACT IUPAC_NAME [IUPAC] +synonym: "aldehydes" RELATED [ChEBI] +synonym: "aldehydum" RELATED [ChEBI] +synonym: "an aldehyde" RELATED [UniProt] +synonym: "CHOR" RELATED FORMULA [ChEBI] +synonym: "RC(=O)H" RELATED [IUPAC] +synonym: "RCHO" RELATED [KEGG_COMPOUND] +xref: KEGG:C00071 +is_a: CHEBI:36586 ! carbonyl compound +relationship: has_part CHEBI:42485 ! formyl group + +[Term] +id: CHEBI:17489 +name: 3',5'-cyclic AMP +namespace: chebi_ontology +alt_id: CHEBI:11673 +alt_id: CHEBI:1325 +alt_id: CHEBI:19827 +alt_id: CHEBI:41588 +def: "A 3',5'-cyclic purine nucleotide having having adenine as the nucleobase." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3',5'-Cyclic AMP" EXACT [KEGG_COMPOUND] +synonym: "329.053" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "329.20614" RELATED MASS [ChEBI] +synonym: "adenosine 3',5'-(hydrogen phosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "adenosine 3',5'-cyclic monophosphate" RELATED [NIST_Chemistry_WebBook] +synonym: "Adenosine 3',5'-cyclic phosphate" RELATED [KEGG_COMPOUND] +synonym: "Adenosine 3',5'-phosphate" RELATED [KEGG_COMPOUND] +synonym: "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" RELATED [PDBeChem] +synonym: "C10H12N5O6P" RELATED FORMULA [KEGG_COMPOUND] +synonym: "cAMP" RELATED [KEGG_COMPOUND] +synonym: "Cyclic adenylic acid" RELATED [KEGG_COMPOUND] +synonym: "Cyclic AMP" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C10H12N5O6P/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7-4(20-10)1-19-22(17,18)21-7/h2-4,6-7,10,16H,1H2,(H,17,18)(H2,11,12,13)/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "IVOMOUWHDPKRLL-KQYNXXCUSA-N" RELATED InChIKey [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@@H]1O[C@@H]2COP(O)(=O)O[C@H]2[C@H]1O" RELATED SMILES [ChEBI] +xref: Beilstein:52645 "Beilstein" +xref: CAS:60-92-4 "NIST Chemistry WebBook" +xref: DrugBank:DB02527 +xref: HMDB:HMDB00058 +xref: KEGG:C00575 +xref: KNApSAcK:C00001497 +xref: MetaCyc:CAMP +xref: PDBeChem:CMP +xref: PMID:16295522 "Europe PMC" +xref: PMID:18372334 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: Reaxys:52645 "Reaxys" +xref: Wikipedia:Cyclic_AMP +is_a: CHEBI:19834 ! 3',5'-cyclic purine nucleotide +is_a: CHEBI:61296 ! adenyl ribonucleotide +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:58165 ! 3',5'-cyclic AMP(1-) + +[Term] +id: CHEBI:17497 +name: glycolic acid +namespace: chebi_ontology +alt_id: CHEBI:24390 +alt_id: CHEBI:42865 +alt_id: CHEBI:5475 +def: "A 2-hydroxy monocarboxylic acid that is acetic acid where the methyl group has been hydroxylated." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-Hydroxyacetic acid" RELATED [ChemIDplus] +synonym: "2-Hydroxyethanoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "76.016" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "76.05136" RELATED MASS [ChEBI] +synonym: "AEMRFAOFKBGASW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "alpha-Hydroxyacetic acid" RELATED [HMDB] +synonym: "alpha-hydroxyacetic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "C2H4O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "GLYCOLIC ACID" EXACT [PDBeChem] +synonym: "Glycolic acid" EXACT [KEGG_COMPOUND] +synonym: "Glycollic acid" RELATED [ChemIDplus] +synonym: "HOCH2COOH" RELATED [NIST_Chemistry_WebBook] +synonym: "Hydroxyacetic acid" RELATED [KEGG_COMPOUND] +synonym: "hydroxyacetic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "Hydroxyethanoic acid" RELATED [ChemIDplus] +synonym: "InChI=1S/C2H4O3/c3-1-2(4)5/h3H,1H2,(H,4,5)" RELATED InChI [ChEBI] +synonym: "OCC(O)=O" RELATED SMILES [ChEBI] +xref: CAS:79-14-1 "ChemIDplus" +xref: Drug_Central:4645 "DrugCentral" +xref: HMDB:HMDB00115 +xref: KEGG:C00160 +xref: KNApSAcK:C00007461 +xref: LIPID_MAPS_instance:LMFA01050148 "LIPID MAPS" +xref: MetaCyc:GLYCOLLATE +xref: PDBeChem:GOA +xref: PMID:14585457 "Europe PMC" +xref: PMID:15662707 "Europe PMC" +xref: PMID:15716481 "Europe PMC" +xref: PMID:15716482 "Europe PMC" +xref: PMID:18498500 "Europe PMC" +xref: PMID:19025792 "Europe PMC" +xref: PMID:21950544 "Europe PMC" +xref: PMID:22044748 "Europe PMC" +xref: PMID:22128110 "Europe PMC" +xref: PMID:22360337 "Europe PMC" +xref: PMID:22421647 "Europe PMC" +xref: Reaxys:1209322 "Reaxys" +xref: Wikipedia:Glycolic_acid +is_a: CHEBI:15734 ! primary alcohol +is_a: CHEBI:49302 ! 2-hydroxy monocarboxylic acid +relationship: has_functional_parent CHEBI:15366 ! acetic acid +relationship: has_role CHEBI:25212 ! metabolite +relationship: has_role CHEBI:50176 ! keratolytic drug +relationship: is_conjugate_acid_of CHEBI:29805 ! glycolate + +[Term] +id: CHEBI:17514 +name: cyanide +namespace: chebi_ontology +alt_id: CHEBI:14038 +alt_id: CHEBI:3969 +alt_id: CHEBI:41780 +def: "A pseudohalide anion that is the conjugate base of hydrogen cyanide." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "26.003" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "26.01740" RELATED MASS [ChEBI] +synonym: "[C-]#N" RELATED SMILES [ChEBI] +synonym: "CN" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CN(-)" RELATED [IUPAC] +synonym: "CN-" RELATED [KEGG_COMPOUND] +synonym: "Cyanide" EXACT [KEGG_COMPOUND] +synonym: "Cyanide" EXACT [ChEBI] +synonym: "cyanide" EXACT IUPAC_NAME [IUPAC] +synonym: "cyanide" EXACT [UniProt] +synonym: "CYANIDE ION" RELATED [PDBeChem] +synonym: "InChI=1S/CN/c1-2/q-1" RELATED InChI [ChEBI] +synonym: "nitridocarbonate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "Prussiate" RELATED [KEGG_COMPOUND] +synonym: "XFXPMWWXUTWYJX-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Zyanid" RELATED [ChEBI] +xref: Beilstein:1900509 "Beilstein" +xref: CAS:57-12-5 "KEGG COMPOUND" +xref: Gmelin:89 "Gmelin" +xref: HMDB:HMDB02084 +xref: KEGG:C00177 +xref: MetaCyc:CPD-13584 +xref: PDBeChem:CYN +xref: PMID:11386635 "Europe PMC" +xref: PMID:14871577 "Europe PMC" +xref: PMID:17554165 "Europe PMC" +xref: PMID:7839575 "Europe PMC" +xref: Reaxys:1900509 "Reaxys" +xref: Wikipedia:Cyanide +is_a: CHEBI:36828 ! pseudohalide anion +relationship: has_role CHEBI:38500 ! EC 1.9.3.1 (cytochrome c oxidase) inhibitor +relationship: is_conjugate_base_of CHEBI:18407 ! hydrogen cyanide +relationship: is_conjugate_base_of CHEBI:36856 ! hydrogen isocyanide + +[Term] +id: CHEBI:17522 +name: alditol +namespace: chebi_ontology +alt_id: CHEBI:13754 +alt_id: CHEBI:22298 +alt_id: CHEBI:2556 +def: "A carbohydrate that is an acyclic polyol having the general formula HOCH2[CH(OH)]nCH2OH (formally derivable from an aldose by reduction of the carbonyl group)." [] +subset: 3_STAR +synonym: "(CH2O)nC2H6O2" RELATED FORMULA [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "Alditol" EXACT [KEGG_COMPOUND] +synonym: "alditols" RELATED [ChEBI] +synonym: "Glycitol" RELATED [KEGG_COMPOUND] +synonym: "Sugar alcohol" RELATED [KEGG_COMPOUND] +xref: KEGG:C00717 +xref: Wikipedia:Glycerin +is_a: CHEBI:16646 ! carbohydrate +is_a: CHEBI:26191 ! polyol + +[Term] +id: CHEBI:17544 +name: hydrogencarbonate +namespace: chebi_ontology +alt_id: CHEBI:13363 +alt_id: CHEBI:22863 +alt_id: CHEBI:40961 +alt_id: CHEBI:5589 +def: "The carbon oxoanion resulting from the removal of a proton from carbonic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "60.993" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "61.01684" RELATED MASS [ChEBI] +synonym: "[CO2(OH)](-)" RELATED [IUPAC] +synonym: "Acid carbonate" RELATED [KEGG_COMPOUND] +synonym: "Bicarbonate" RELATED [KEGG_COMPOUND] +synonym: "BICARBONATE ION" RELATED [PDBeChem] +synonym: "BVKZGUZCCUSVTD-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "CHO3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "HCO3(-)" RELATED [IUPAC] +synonym: "HCO3-" RELATED [KEGG_COMPOUND] +synonym: "hydrogen(trioxidocarbonate)(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "Hydrogencarbonate" EXACT [KEGG_COMPOUND] +synonym: "hydrogencarbonate" EXACT [UniProt] +synonym: "hydrogencarbonate" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogencarbonate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogentrioxocarbonate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogentrioxocarbonate(IV)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydroxidodioxidocarbonate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/CH2O3/c2-1(3)4/h(H2,2,3,4)/p-1" RELATED InChI [ChEBI] +synonym: "OC([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:3903504 "Beilstein" +xref: CAS:71-52-3 "ChemIDplus" +xref: Gmelin:49249 "Gmelin" +xref: HMDB:HMDB00595 +xref: KEGG:C00288 +xref: PDBeChem:BCT +is_a: CHEBI:35604 ! carbon oxoanion +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:41609 ! carbonate +relationship: is_conjugate_base_of CHEBI:28976 ! carbonic acid + +[Term] +id: CHEBI:17561 +name: L-cysteine +namespace: chebi_ontology +alt_id: CHEBI:13095 +alt_id: CHEBI:21261 +alt_id: CHEBI:41227 +alt_id: CHEBI:41700 +alt_id: CHEBI:41768 +alt_id: CHEBI:41781 +alt_id: CHEBI:41811 +alt_id: CHEBI:6207 +def: "An optically active form of cysteine having L-configuration." [] +subset: 3_STAR +synonym: "(2R)-2-amino-3-mercaptopropanoic acid" RELATED [JCBN] +synonym: "(2R)-2-amino-3-sulfanylpropanoic acid" RELATED [IUPAC] +synonym: "(R)-2-amino-3-mercaptopropanoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "121.020" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "121.15800" RELATED MASS [ChEBI] +synonym: "C" RELATED [ChEBI] +synonym: "C3H7NO2S" RELATED FORMULA [ChEBI] +synonym: "Cys" RELATED [ChEBI] +synonym: "CYSTEINE" RELATED [PDBeChem] +synonym: "E 920" RELATED [ChEBI] +synonym: "E-920" RELATED [ChEBI] +synonym: "E920" RELATED [ChEBI] +synonym: "FREE CYSTEINE" RELATED [PDBeChem] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-2-Amino-3-mercaptopropionic acid" RELATED [KEGG_COMPOUND] +synonym: "L-Cystein" RELATED [ChEBI] +synonym: "L-Cysteine" EXACT [KEGG_COMPOUND] +synonym: "L-cysteine" EXACT IUPAC_NAME [IUPAC] +synonym: "L-Zystein" RELATED [ChEBI] +synonym: "N[C@@H](CS)C(O)=O" RELATED SMILES [ChEBI] +synonym: "XUJNEKJLAYXESH-REOHCLBHSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1721408 "Beilstein" +xref: CAS:52-90-4 "KEGG COMPOUND" +xref: Drug_Central:769 "DrugCentral" +xref: DrugBank:DB00151 +xref: ECMDB:ECMDB00574 +xref: Gmelin:49991 "Gmelin" +xref: HMDB:HMDB00574 +xref: KEGG:C00097 +xref: KEGG:D00026 +xref: KNApSAcK:C00001351 +xref: MetaCyc:CYS +xref: PDBeChem:CYS +xref: PMID:11732994 "Europe PMC" +xref: PMID:13761469 "Europe PMC" +xref: PMID:22735334 "Europe PMC" +xref: Reaxys:1721408 "Reaxys" +xref: Wikipedia:Cysteine +xref: YMDB:YMDB00046 +is_a: CHEBI:15356 ! cysteine +is_a: CHEBI:26650 ! serine family amino acid +relationship: has_role CHEBI:64577 ! flour treatment agent +relationship: has_role CHEBI:77703 ! EC 4.3.1.3 (histidine ammonia-lyase) inhibitor +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:32442 ! L-cysteinate(1-) +relationship: is_conjugate_base_of CHEBI:32445 ! L-cysteinium +relationship: is_enantiomer_of CHEBI:16375 ! D-cysteine +relationship: is_tautomer_of CHEBI:35235 ! L-cysteine zwitterion + +[Term] +id: CHEBI:17562 +name: cytidine +namespace: chebi_ontology +alt_id: CHEBI:14063 +alt_id: CHEBI:23515 +alt_id: CHEBI:4053 +alt_id: CHEBI:41649 +alt_id: CHEBI:41686 +alt_id: CHEBI:41704 +def: "A pyrimidine nucleoside in which cytosine is attached to ribofuranose via a beta-N(1)-glycosidic bond." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-beta-D-Ribofuranosylcytosine" RELATED [HMDB] +synonym: "1beta-D-ribofuranosylcytosine" RELATED [NIST_Chemistry_WebBook] +synonym: "243.086" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "243.21674" RELATED MASS [ChEBI] +synonym: "4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE" RELATED [PDBeChem] +synonym: "4-amino-1-beta-D-ribofuranosylpyrimidin-2(1H)-one" RELATED [ChEBI] +synonym: "4-amino-1beta-D-ribofuranosyl-2(1H)-pyrimidinone" RELATED [NIST_Chemistry_WebBook] +synonym: "C9H13N3O5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cyd" RELATED [CBN] +synonym: "Cytidin" RELATED [ChEBI] +synonym: "Cytidine" EXACT [KEGG_COMPOUND] +synonym: "cytidine" EXACT [UniProt] +synonym: "cytidine" EXACT IUPAC_NAME [IUPAC] +synonym: "Cytosine riboside" RELATED [HMDB] +synonym: "cytosine-1beta-D-Ribofuranoside" RELATED [HMDB] +synonym: "InChI=1S/C9H13N3O5/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7-,8-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ccn([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)n1" RELATED SMILES [ChEBI] +synonym: "UHDGCWIWMRVCDJ-XVFCMESISA-N" RELATED InChIKey [ChEBI] +synonym: "Zytidin" RELATED [ChEBI] +xref: Beilstein:89173 "Beilstein" +xref: CAS:65-46-3 "ChemIDplus" +xref: DrugBank:DB02097 +xref: Gmelin:84763 "Gmelin" +xref: HMDB:HMDB00089 +xref: KEGG:C00475 +xref: KEGG:D07769 +xref: MetaCyc:CYTIDINE +xref: PDBeChem:CTN +xref: PMID:12591866 "Europe PMC" +xref: PMID:15621516 "Europe PMC" +xref: PMID:19194376 "Europe PMC" +xref: Reaxys:89173 "Reaxys" +xref: Wikipedia:Cytidine +is_a: CHEBI:23524 ! cytidines +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:17568 +name: uracil +namespace: chebi_ontology +alt_id: CHEBI:15288 +alt_id: CHEBI:27210 +alt_id: CHEBI:46375 +alt_id: CHEBI:9882 +def: "A common and naturally occurring pyrimidine nucleobase in which the pyrimidine ring is substituted with two oxo groups at positions 2 and 4. Found in RNA, it base pairs with adenine and replaces thymine during DNA transcription." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "112.027" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "112.08684" RELATED MASS [ChEBI] +synonym: "2,4(1H,3H)-pyrimidinedione" RELATED [NIST_Chemistry_WebBook] +synonym: "2,4-Dioxopyrimidine" RELATED [HMDB] +synonym: "2,4-Pyrimidinedione" RELATED [HMDB] +synonym: "C4H4N2O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C4H4N2O2/c7-3-1-2-5-4(8)6-3/h1-2H,(H2,5,6,7,8)" RELATED InChI [ChEBI] +synonym: "ISAKRJDGNUQOIC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "O=c1cc[nH]c(=O)[nH]1" RELATED SMILES [ChEBI] +synonym: "pyrimidine-2,4(1H,3H)-dione" EXACT IUPAC_NAME [IUPAC] +synonym: "U" RELATED [ChEBI] +synonym: "Ura" RELATED [CBN] +synonym: "URACIL" EXACT [PDBeChem] +synonym: "Uracil" EXACT [KEGG_COMPOUND] +synonym: "uracil" EXACT [UniProt] +synonym: "Urazil" RELATED [ChEBI] +xref: Beilstein:606623 "Beilstein" +xref: CAS:66-22-8 "NIST Chemistry WebBook" +xref: DrugBank:DB03419 +xref: Gmelin:2896 "Gmelin" +xref: HMDB:HMDB00300 +xref: KEGG:C00106 +xref: KEGG:D00027 +xref: KNApSAcK:C00001513 +xref: MetaCyc:URACIL +xref: PDBeChem:URA +xref: PMID:11279060 "Europe PMC" +xref: PMID:12855717 "Europe PMC" +xref: PMID:15274295 "Europe PMC" +xref: PMID:16834123 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:18533995 "Europe PMC" +xref: PMID:18815805 "Europe PMC" +xref: PMID:19175333 "Europe PMC" +xref: PMID:22020693 "Europe PMC" +xref: PMID:22074393 "Europe PMC" +xref: PMID:22120518 "Europe PMC" +xref: PMID:22171528 "Europe PMC" +xref: PMID:22237209 "Europe PMC" +xref: PMID:22299724 "Europe PMC" +xref: PMID:22356544 "Europe PMC" +xref: PMID:22447672 "Europe PMC" +xref: PMID:22483865 "Europe PMC" +xref: PMID:22567906 "Europe PMC" +xref: PMID:22685418 "Europe PMC" +xref: PMID:3654008 "Europe PMC" +xref: Reaxys:606623 "Reaxys" +xref: Wikipedia:Uracil +is_a: CHEBI:26432 ! pyrimidine nucleobase +is_a: CHEBI:38337 ! pyrimidone +relationship: has_role CHEBI:50266 ! prodrug +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_tautomer_of CHEBI:43254 ! (4S)-4-hydroxy-3,4-dihydropyrimidin-2(1H)-one + +[Term] +id: CHEBI:17578 +name: toluene +namespace: chebi_ontology +alt_id: CHEBI:15248 +alt_id: CHEBI:27022 +alt_id: CHEBI:44023 +alt_id: CHEBI:9624 +def: "The simplest member of the class toluenes consisting of a benzene core which bears a single methyl substituent." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "92.063" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "92.13842" RELATED MASS [ChEBI] +synonym: "C7H8" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cc1ccccc1" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C7H8/c1-7-5-3-2-4-6-7/h2-6H,1H3" RELATED InChI [ChEBI] +synonym: "methylbenzene" RELATED [PDBeChem] +synonym: "phenylmethane" RELATED [ChemIDplus] +synonym: "Toluen" RELATED [NIST_Chemistry_WebBook] +synonym: "TOLUENE" EXACT [PDBeChem] +synonym: "Toluene" EXACT [KEGG_COMPOUND] +synonym: "toluene" EXACT [ChEBI] +synonym: "toluene" EXACT [UniProt] +synonym: "toluene" EXACT IUPAC_NAME [IUPAC] +synonym: "Toluol" RELATED [NIST_Chemistry_WebBook] +synonym: "YXFVVABEGXRONW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:635760 "Beilstein" +xref: CAS:108-88-3 "ChemIDplus" +xref: DrugBank:DB01900 +xref: Gmelin:2456 "Gmelin" +xref: KEGG:C01455 +xref: PDBeChem:MBN +xref: PMID:11182169 "Europe PMC" +xref: PMID:11314682 "Europe PMC" +xref: PMID:11846266 "Europe PMC" +xref: PMID:11991009 "Europe PMC" +xref: PMID:12062755 "Europe PMC" +xref: PMID:12213539 "Europe PMC" +xref: PMID:12237258 "Europe PMC" +xref: PMID:12784113 "Europe PMC" +xref: PMID:12876426 "Europe PMC" +xref: PMID:14512097 "Europe PMC" +xref: PMID:14559343 "Europe PMC" +xref: PMID:14605898 "Europe PMC" +xref: PMID:15015825 "Europe PMC" +xref: PMID:15019953 "Europe PMC" +xref: PMID:15119846 "Europe PMC" +xref: PMID:15193425 "Europe PMC" +xref: PMID:15542760 "Europe PMC" +xref: PMID:15567510 "Europe PMC" +xref: PMID:15695158 "Europe PMC" +xref: PMID:15796064 "Europe PMC" +xref: PMID:16316648 "Europe PMC" +xref: PMID:16348226 "Europe PMC" +xref: PMID:16601996 "Europe PMC" +xref: PMID:17145141 "Europe PMC" +xref: PMID:17175136 "Europe PMC" +xref: PMID:17497535 "Europe PMC" +xref: PMID:17725881 "Europe PMC" +xref: PMID:18397809 "Europe PMC" +xref: PMID:18832024 "Europe PMC" +xref: PMID:19261054 "Europe PMC" +xref: PMID:19384711 "Europe PMC" +xref: PMID:19429395 "Europe PMC" +xref: PMID:19635754 "Europe PMC" +xref: PMID:19765629 "Europe PMC" +xref: PMID:19825861 "Europe PMC" +xref: PMID:19928203 "Europe PMC" +xref: PMID:19969016 "Europe PMC" +xref: PMID:20347282 "Europe PMC" +xref: PMID:20837561 "Europe PMC" +xref: PMID:21430649 "Europe PMC" +xref: PMID:21655021 "Europe PMC" +xref: PMID:21731073 "Europe PMC" +xref: PMID:21802510 "Europe PMC" +xref: PMID:21840036 "Europe PMC" +xref: Reaxys:635760 "Reaxys" +xref: UM-BBD_compID:c0114 "UM-BBD" +xref: Wikipedia:Toluene +is_a: CHEBI:134179 ! volatile organic compound +is_a: CHEBI:27024 ! toluenes +is_a: CHEBI:38975 ! methylbenzene +relationship: has_role CHEBI:48355 ! non-polar solvent +relationship: has_role CHEBI:48873 ! cholinergic antagonist +relationship: has_role CHEBI:50910 ! neurotoxin +relationship: has_role CHEBI:62803 ! fuel additive + +[Term] +id: CHEBI:17588 +name: L-homocysteine +namespace: chebi_ontology +alt_id: CHEBI:13122 +alt_id: CHEBI:21329 +alt_id: CHEBI:43117 +alt_id: CHEBI:6245 +def: "Homocysteine with L configuration." [] +subset: 3_STAR +synonym: "(2S)-2-amino-4-sulfanylbutanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "135.035" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "135.18500" RELATED MASS [ChEBI] +synonym: "C4H9NO2S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "FFFHZYDWPBMWHY-VKHMYHEASA-N" RELATED InChIKey [ChEBI] +synonym: "Hcy" RELATED [ChEBI] +synonym: "InChI=1S/C4H9NO2S/c5-3(1-2-8)4(6)7/h3,8H,1-2,5H2,(H,6,7)/t3-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-2-Amino-4-mercaptobutyric acid" RELATED [KEGG_COMPOUND] +synonym: "L-2-amino-4-mercaptobutyric acid" RELATED [ChEBI] +synonym: "L-Homocysteine" EXACT [KEGG_COMPOUND] +synonym: "L-homocysteine" EXACT [ChEBI] +synonym: "N[C@@H](CCS)C(O)=O" RELATED SMILES [ChEBI] +xref: CAS:6027-13-0 "KEGG COMPOUND" +xref: DrugBank:DB04422 +xref: HMDB:HMDB00742 +xref: KEGG:C00155 +xref: KNApSAcK:C00001365 +xref: MetaCyc:HOMO-CYS +xref: PDBeChem:HCS +xref: PMID:11686577 "Europe PMC" +xref: PMID:15131313 "Europe PMC" +xref: PMID:15365276 "Europe PMC" +xref: PMID:16702349 "Europe PMC" +xref: PMID:19383686 "Europe PMC" +xref: Reaxys:1721685 "Reaxys" +is_a: CHEBI:17230 ! homocysteine +is_a: CHEBI:26650 ! serine family amino acid +relationship: is_conjugate_acid_of CHEBI:63072 ! L-homocysteinate +relationship: is_tautomer_of CHEBI:58199 ! L-homocysteine zwitterion + +[Term] +id: CHEBI:17593 +name: maltooligosaccharide +namespace: chebi_ontology +alt_id: CHEBI:11169 +alt_id: CHEBI:18926 +alt_id: CHEBI:543 +alt_id: CHEBI:64478 +def: "A glucooligosaccharide derived from glucose monomers linked via alpha-D-1,4 bonds as in maltose. The term is commonly applied to the series of linear oligosaccharides composed of two, three, four, five and six such units of glucose." [] +subset: 3_STAR +synonym: "(1->4)-alpha-D-glucooligosaccharides" RELATED [ChEBI] +synonym: "maltooligosaccharides" RELATED [ChEBI] +is_a: CHEBI:24268 ! glucooligosaccharide + +[Term] +id: CHEBI:17596 +name: inosine +namespace: chebi_ontology +alt_id: CHEBI:14456 +alt_id: CHEBI:24841 +alt_id: CHEBI:44407 +alt_id: CHEBI:5927 +def: "A purine nucleoside in which hypoxanthine is attached to ribofuranose via a beta-N(9)-glycosidic bond." [] +subset: 3_STAR +synonym: "(2R,3S,4R,5R)-2-(hydroxymethyl)-5-(6-hydroxy-9H-purin-9-yl)tetrahydrofuran-3,4-diol" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "268.081" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "268.22610" RELATED MASS [ChEBI] +synonym: "9-(beta-D-ribofuranosyl)-9H-purin-6-ol" EXACT IUPAC_NAME [IUPAC] +synonym: "9-beta-D-ribofuranosyl-9H-purin-6-ol" RELATED [IUPAC] +synonym: "9-beta-D-ribofuranosylhypoxanthine" RELATED [NIST_Chemistry_WebBook] +synonym: "C10H12N4O5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "hypoxanthine D-riboside" RELATED [ChemIDplus] +synonym: "hypoxanthosine" RELATED [ChemIDplus] +synonym: "i" RELATED [ChEBI] +synonym: "InChI=1S/C10H12N4O5/c15-1-4-6(16)7(17)10(19-4)14-3-13-5-8(14)11-2-12-9(5)18/h2-4,6-7,10,15-17H,1H2,(H,11,12,18)/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "Inosin" RELATED [ChEBI] +synonym: "inosina" RELATED INN [ChemIDplus] +synonym: "INOSINE" EXACT [PDBeChem] +synonym: "Inosine" EXACT [KEGG_COMPOUND] +synonym: "inosine" EXACT [UniProt] +synonym: "inosine" EXACT IUPAC_NAME [IUPAC] +synonym: "inosine" RELATED INN [ChemIDplus] +synonym: "inosinum" RELATED INN [ChemIDplus] +synonym: "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(O)ncnc12" RELATED SMILES [ChEBI] +synonym: "UGQMRVRMYYASKQ-KQYNXXCUSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:624889 "Beilstein" +xref: CAS:58-63-9 "KEGG COMPOUND" +xref: Drug_Central:3301 "DrugCentral" +xref: ECMDB:ECMDB00195 +xref: Gmelin:489332 "Gmelin" +xref: HMDB:HMDB00195 +xref: KEGG:C00294 +xref: KEGG:D00054 +xref: KNApSAcK:C00019692 +xref: MetaCyc:INOSINE +xref: PDBeChem:NOS +xref: PMID:22770225 "Europe PMC" +xref: Reaxys:624889 "Reaxys" +xref: Wikipedia:Inosine +xref: YMDB:YMDB00510 +is_a: CHEBI:24844 ! inosines +relationship: has_functional_parent CHEBI:17368 ! hypoxanthine +relationship: has_functional_parent CHEBI:46998 ! ribofuranose +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:17608 +name: D-aldohexose +namespace: chebi_ontology +alt_id: CHEBI:12990 +alt_id: CHEBI:21038 +def: "Any D-aldose having a chain of six carbon atoms in the molecule." [] +subset: 3_STAR +synonym: "C6H12O6" RELATED FORMULA [ChEBI] +synonym: "D-aldohexose" EXACT [UniProt] +synonym: "D-aldohexoses" RELATED [ChEBI] +is_a: CHEBI:33917 ! aldohexose +is_a: CHEBI:4194 ! D-hexose + +[Term] +id: CHEBI:17617 +name: L-fuculose +namespace: chebi_ontology +alt_id: CHEBI:13103 +alt_id: CHEBI:21295 +alt_id: CHEBI:58208 +alt_id: CHEBI:6219 +def: "A a deoxyketohexose comprising L-tagatose with the hydroxy group at position 6 replaced by hydrogen." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "164.068" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "164.15650" RELATED MASS [ChEBI] +synonym: "6-deoxy-L-lyxo-hex-2-ulose" RELATED [IUPAC] +synonym: "6-deoxy-L-tagatose" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H12O5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C[C@H](O)[C@@H](O)[C@@H](O)C(=O)CO" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C6H12O5/c1-3(8)5(10)6(11)4(9)2-7/h3,5-8,10-11H,2H2,1H3/t3-,5+,6-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-Fuculose" EXACT [KEGG_COMPOUND] +synonym: "L-fuculose" EXACT [UniProt] +synonym: "QZNPNKJXABGCRC-LFRDXLMFSA-N" RELATED InChIKey [ChEBI] +xref: KEGG:C01721 +xref: KNApSAcK:C00019650 +is_a: CHEBI:24965 ! deoxyketohexose +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:17630 +name: kanamycin A +namespace: chebi_ontology +alt_id: CHEBI:14487 +alt_id: CHEBI:24945 +alt_id: CHEBI:24947 +alt_id: CHEBI:43482 +alt_id: CHEBI:6106 +subset: 3_STAR +synonym: "(1S,2R,3R,4S,6R)-4,6-diamino-3-(6-amino-6-deoxy-alpha-D-glucopyranosyloxy)-2-hydroxycyclohexyl 3-amino-3-deoxy-alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "4,6-diamino-2-hydroxy-1,3-cyclohexane 3,6'diamino-3,6'-dideoxydi-alpha-D-glucoside" RELATED [ChemIDplus] +synonym: "4,6-diamino-2-hydroxy-1,3-cyclohexylene 3,6'-diamino-3,6'-dideoxydi-D-glucopyranoside" RELATED [ChemIDplus] +synonym: "484.238" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "484.49860" RELATED MASS [ChEBI] +synonym: "C18H36N4O11" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C18H36N4O11/c19-2-6-10(25)12(27)13(28)18(30-6)33-16-5(21)1-4(20)15(14(16)29)32-17-11(26)8(22)9(24)7(3-23)31-17/h4-18,23-29H,1-3,19-22H2/t4-,5+,6-,7-,8+,9-,10-,11-,12+,13-,14-,15+,16-,17-,18-/m1/s1" RELATED InChI [ChEBI] +synonym: "KANAMYCIN A" EXACT [PDBeChem] +synonym: "Kanamycin A" EXACT [KEGG_COMPOUND] +synonym: "NC[C@H]1O[C@H](O[C@@H]2[C@@H](N)C[C@@H](N)[C@H](O[C@H]3O[C@H](CO)[C@@H](O)[C@H](N)[C@H]3O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "O-3-amino-3-deoxy-alpha-D-glucopyranosyl-(1->6)-O-(6-amino-6-deoxy-alpha-D-glucopyranosyl-(1->4))-2-deoxy-D-streptamine" RELATED [ChemIDplus] +synonym: "SBUJHOSQTJFQJX-NOAMYHISSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:61647 "Beilstein" +xref: CAS:59-01-8 "ChemIDplus" +xref: Drug_Central:1519 "DrugCentral" +xref: DrugBank:DB01172 +xref: Gmelin:2044856 "Gmelin" +xref: KEGG:C01822 +xref: LINCS:LSM-5261 +xref: PDBeChem:KAN +xref: PMID:22907688 "Europe PMC" +xref: PMID:24336356 "Europe PMC" +xref: PMID:24566637 "Europe PMC" +xref: Wikipedia:Kanamycin +is_a: CHEBI:24951 ! kanamycins +relationship: has_role CHEBI:76969 ! bacterial metabolite +relationship: is_conjugate_base_of CHEBI:58214 ! kanamycin A(4+) + +[Term] +id: CHEBI:17632 +name: nitrate +namespace: chebi_ontology +alt_id: CHEBI:14654 +alt_id: CHEBI:44487 +alt_id: CHEBI:71263 +def: "A nitrogen oxoanion formed by loss of a proton from nitric acid. Principal species present at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "61.988" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "62.00490" RELATED MASS [ChEBI] +synonym: "[NO3](-)" RELATED [IUPAC] +synonym: "[O-][N+]([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/NO3/c2-1(3)4/q-1" RELATED InChI [ChEBI] +synonym: "NHNBFGGVMKEFGY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "nitrate" EXACT [UniProt] +synonym: "nitrate" EXACT IUPAC_NAME [IUPAC] +synonym: "NITRATE ION" RELATED [PDBeChem] +synonym: "nitrate(1-)" RELATED [ChemIDplus] +synonym: "NO3" RELATED [ChEBI] +synonym: "NO3" RELATED FORMULA [ChEBI] +synonym: "NO3(-)" RELATED [IUPAC] +synonym: "trioxidonitrate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxonitrate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxonitrate(V)" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:3587575 "Beilstein" +xref: CAS:14797-55-8 "NIST Chemistry WebBook" +xref: colombos:NITRATE +xref: Gmelin:1574 "Gmelin" +xref: MetaCyc:NITRATE "SUBMITTER" +xref: PDBeChem:NO3 +xref: Wikipedia:Nitrate +is_a: CHEBI:33458 ! nitrogen oxoanion +is_a: CHEBI:62764 ! reactive nitrogen species +is_a: CHEBI:79389 ! monovalent inorganic anion +relationship: is_conjugate_base_of CHEBI:48107 ! nitric acid + +[Term] +id: CHEBI:17634 +name: D-glucose +namespace: chebi_ontology +alt_id: CHEBI:12965 +alt_id: CHEBI:20999 +def: "A glucose with D-configuration." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "180.15588" RELATED MASS [ChEBI] +synonym: "C6H12O6" RELATED FORMULA [ChEBI] +synonym: "D(+)-glucose" RELATED [ChemIDplus] +synonym: "D-(+)-glucose" RELATED [NIST_Chemistry_WebBook] +synonym: "D-gluco-hexose" EXACT IUPAC_NAME [IUPAC] +synonym: "D-glucose" EXACT IUPAC_NAME [IUPAC] +synonym: "dextrose" RELATED [NIST_Chemistry_WebBook] +synonym: "grape sugar" RELATED [ChemIDplus] +synonym: "Traubenzucker" RELATED [ChemIDplus] +xref: CAS:50-99-7 "ChemIDplus" +is_a: CHEBI:17234 ! glucose +is_a: CHEBI:17608 ! D-aldohexose + +[Term] +id: CHEBI:17650 +name: cortisol +namespace: chebi_ontology +alt_id: CHEBI:14023 +alt_id: CHEBI:24633 +alt_id: CHEBI:3893 +alt_id: CHEBI:58221 +def: "A C21-steroid that is pregn-4-ene substituted by oxo groups at positions 3 and 20 and hydroxy groups at positions 11, 17 and 21. Cortisol is a corticosteroid hormone or glucocorticoid produced by zona fasciculata of the adrenal cortex, which is a part of the adrenal gland. It is usually referred to as the \"stress hormone\" as it is involved in response to stress and anxiety, controlled by corticotropin-releasing hormone (CRH). It increases blood pressure and blood sugar, and reduces immune responses" [] +subset: 3_STAR +synonym: "(11beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione" RELATED [NIST_Chemistry_WebBook] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "11beta,17,21-trihydroxypregn-4-ene-3,20-dione" EXACT IUPAC_NAME [IUPAC] +synonym: "11beta,17alpha,21-Trihydroxy-4-pregnene-3,20-dione" RELATED [KEGG_COMPOUND] +synonym: "11beta,17alpha,21-trihydroxy-4-pregnene-3,20-dione" RELATED [NIST_Chemistry_WebBook] +synonym: "11beta-hydrocortisone" RELATED [NIST_Chemistry_WebBook] +synonym: "17-hydroxycorticosterone" RELATED [ChemIDplus] +synonym: "362.209" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "362.45990" RELATED MASS [ChEBI] +synonym: "4-pregnen-11beta,17alpha,21-triol-3,20-dione" RELATED [NIST_Chemistry_WebBook] +synonym: "[H][C@@]12CCC3=CC(=O)CC[C@]3(C)[C@@]1([H])[C@@H](O)C[C@@]1(C)[C@@]2([H])CC[C@]1(O)C(=O)CO" RELATED SMILES [ChEBI] +synonym: "C21H30O5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cortisol" EXACT [KEGG_COMPOUND] +synonym: "cortisol" EXACT [UniProt] +synonym: "hidrocortisona" RELATED INN [ChemIDplus] +synonym: "Hydrocortisone" RELATED [KEGG_COMPOUND] +synonym: "hydrocortisone" RELATED INN [ChemIDplus] +synonym: "hydrocortisonum" RELATED INN [ChemIDplus] +synonym: "InChI=1S/C21H30O5/c1-19-7-5-13(23)9-12(19)3-4-14-15-6-8-21(26,17(25)11-22)20(15,2)10-16(24)18(14)19/h9,14-16,18,22,24,26H,3-8,10-11H2,1-2H3/t14-,15-,16-,18+,19-,20-,21-/m0/s1" RELATED InChI [ChEBI] +synonym: "JYGXADMDTFJGBT-VWUMJDOOSA-N" RELATED InChIKey [ChEBI] +synonym: "Kendall's compound F" RELATED [KEGG_COMPOUND] +synonym: "Reichstein's substance M" RELATED [KEGG_COMPOUND] +xref: Beilstein:1354819 "Beilstein" +xref: CAS:50-23-7 "ChemIDplus" +xref: colombos:HYDROCORTISONE +xref: Drug_Central:1388 "DrugCentral" +xref: DrugBank:DB00741 +xref: KEGG:C00735 +xref: KEGG:D00088 +xref: LINCS:LSM-5980 +xref: LIPID_MAPS_instance:LMST02030001 "LIPID MAPS" +xref: Patent:US2602769 +xref: PDBeChem:HCY +xref: PMID:10438974 "Europe PMC" +xref: PMID:2268561 "Europe PMC" +xref: Wikipedia:Hydrocortisone +is_a: CHEBI:24261 ! glucocorticoid +is_a: CHEBI:35342 ! 17alpha-hydroxy steroid +is_a: CHEBI:35344 ! 21-hydroxy steroid +is_a: CHEBI:35346 ! 11beta-hydroxy steroid +is_a: CHEBI:36885 ! 20-oxo steroid +is_a: CHEBI:47909 ! 3-oxo-Delta(4) steroid +is_a: CHEBI:61313 ! C21-steroid +relationship: has_parent_hydride CHEBI:8386 ! pregnane +relationship: has_role CHEBI:35472 ! anti-inflammatory drug +relationship: has_role CHEBI:49167 ! anti-asthmatic drug +relationship: has_role CHEBI:50857 ! anti-allergic agent +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:17668 +name: ribonucleoside diphosphate +namespace: chebi_ontology +alt_id: CHEBI:15046 +alt_id: CHEBI:26557 +alt_id: CHEBI:8845 +subset: 3_STAR +synonym: "0" RELATED CHARGE [KEGG_COMPOUND] +synonym: "292.983" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "293.083" RELATED MASS [KEGG_COMPOUND] +synonym: "C5H11O10P2R" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Ribonucleoside diphosphate" EXACT [KEGG_COMPOUND] +synonym: "ribonucleoside diphosphate" EXACT [UniProt] +synonym: "ribonucleoside diphosphates" RELATED [ChEBI] +xref: KEGG:C03723 +is_a: CHEBI:16862 ! nucleoside diphosphate + +[Term] +id: CHEBI:17677 +name: CTP +namespace: chebi_ontology +alt_id: CHEBI:13286 +alt_id: CHEBI:23522 +alt_id: CHEBI:3285 +alt_id: CHEBI:41675 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "482.985" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "483.15644" RELATED MASS [ChEBI] +synonym: "5'-CTP" RELATED [ChemIDplus] +synonym: "C9H16N3O14P3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CTP" EXACT [KEGG_COMPOUND] +synonym: "cytidine 5'-(tetrahydrogen triphosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "Cytidine 5'-triphosphate" RELATED [KEGG_COMPOUND] +synonym: "Cytidine triphosphate" RELATED [KEGG_COMPOUND] +synonym: "CYTIDINE-5'-TRIPHOSPHATE" RELATED [PDBeChem] +synonym: "H4ctp" RELATED [ChEBI] +synonym: "InChI=1S/C9H16N3O14P3/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H2,10,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ccn([C@@H]2O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@H]2O)c(=O)n1" RELATED SMILES [ChEBI] +synonym: "PCDQPRRSZKQHHS-XVFCMESISA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:71190 "Beilstein" +xref: CAS:65-47-4 "ChemIDplus" +xref: DrugBank:DB02431 +xref: Gmelin:723598 "Gmelin" +xref: KEGG:C00063 +xref: KNApSAcK:C00019639 +xref: PDBeChem:CTP +is_a: CHEBI:23521 ! cytidine 5'-phosphate +is_a: CHEBI:37044 ! pyrimidine ribonucleoside 5'-triphosphate +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:37563 ! CTP(4-) +relationship: is_conjugate_acid_of CHEBI:58231 ! CTP(3-) + +[Term] +id: CHEBI:17687 +name: glycocholic acid +namespace: chebi_ontology +alt_id: CHEBI:11894 +alt_id: CHEBI:20215 +alt_id: CHEBI:24378 +alt_id: CHEBI:42804 +alt_id: CHEBI:5464 +def: "A bile acid glycine conjugate having cholic acid as the bile acid component." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3alpha,7alpha,12alpha-Trihydroxy-5beta-cholan-24-oylglycine" RELATED [KEGG_COMPOUND] +synonym: "3alpha,7alpha,12alpha-trihydroxy-5beta-cholan-24-oylglycine" RELATED [ChEBI] +synonym: "465.309" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "465.309" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "465.62270" RELATED MASS [ChEBI] +synonym: "C26H43NO6" RELATED FORMULA [ChEBI] +synonym: "C26H43NO6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C[C@H](CCC(=O)NCC(O)=O)[C@H]1CC[C@H]2[C@@H]3[C@H](O)C[C@@H]4C[C@H](O)CC[C@]4(C)[C@H]3C[C@H](O)[C@]12C" RELATED SMILES [ChEBI] +synonym: "GLYCOCHOLIC ACID" EXACT [PDBeChem] +synonym: "Glycocholic acid" EXACT [KEGG_COMPOUND] +synonym: "InChI=1S/C26H43NO6/c1-14(4-7-22(31)27-13-23(32)33)17-5-6-18-24-19(12-21(30)26(17,18)3)25(2)9-8-16(28)10-15(25)11-20(24)29/h14-21,24,28-30H,4-13H2,1-3H3,(H,27,31)(H,32,33)/t14-,15+,16-,17-,18+,19+,20-,21+,24+,25+,26-/m1/s1" RELATED InChI [ChEBI] +synonym: "N-(3alpha,7alpha,12alpha-trihydroxy-5beta-cholan-24-oyl)glycine" EXACT IUPAC_NAME [IUPAC] +synonym: "N-[(3alpha,5beta,7alpha,12alpha)-3,7,12-trihydroxy-24-oxocholan-24-yl]glycine" RELATED [NIST_Chemistry_WebBook] +synonym: "N-choloylglycine" RELATED [ChemIDplus] +synonym: "RFDAIACWWDREDC-FRVQLJSFSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:2955826 "Beilstein" +xref: CAS:475-31-0 "ChemIDplus" +xref: DrugBank:DB02691 +xref: HMDB:HMDB00138 +xref: KEGG:C01921 +xref: KNApSAcK:C00030410 +xref: LINCS:LSM-3222 +xref: LIPID_MAPS_instance:LMST05030001 "LIPID MAPS" +xref: MetaCyc:GLYCOCHOLIC_ACID +xref: PDBeChem:GCH +xref: PMID:22770225 "Europe PMC" +xref: Reaxys:2955826 "Reaxys" +xref: Wikipedia:Glycocholic_acid +is_a: CHEBI:36255 ! bile acid glycine conjugate +relationship: has_functional_parent CHEBI:16359 ! cholic acid +relationship: has_functional_parent CHEBI:36274 ! glycochenodeoxycholic acid +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:29746 ! glycocholate + +[Term] +id: CHEBI:17698 +name: chloramphenicol +namespace: chebi_ontology +alt_id: CHEBI:13965 +alt_id: CHEBI:23106 +alt_id: CHEBI:23108 +alt_id: CHEBI:3603 +alt_id: CHEBI:47327 +def: "An organochlorine compound that is dichloro-substituted acetamide containing a nitrobenzene ring, an amide bond and two alcohol functions." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2,2-dichloro-N-[(1R,2R)-2-hydroxy-1-(hydroxymethyl)-2-(4-nitrophenyl)ethyl]acetamide" EXACT IUPAC_NAME [IUPAC] +synonym: "322.012" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "322.012" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "323.130" RELATED MASS [ChEBI] +synonym: "C11H12Cl2N2O5" RELATED FORMULA [ChEBI] +synonym: "C11H12Cl2N2O5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C1=C([C@H]([C@H](NC(C(Cl)Cl)=O)CO)O)C=CC(=C1)[N+]([O-])=O" RELATED SMILES [ChEBI] +synonym: "Chloramex" RELATED BRAND_NAME [ChemIDplus] +synonym: "CHLORAMPHENICOL" EXACT [PDBeChem] +synonym: "Chloramphenicol" EXACT [KEGG_COMPOUND] +synonym: "chloramphenicol" EXACT [UniProt] +synonym: "chloramphenicol" RELATED INN [ChemIDplus] +synonym: "chloramphenicol" RELATED INN [ChEBI] +synonym: "chloramphenicolum" RELATED INN [ChemIDplus] +synonym: "chlornitromycin" RELATED [ChEBI] +synonym: "Chlorocid" RELATED BRAND_NAME [ChemIDplus] +synonym: "Chlorocol" RELATED BRAND_NAME [ChemIDplus] +synonym: "Chloromycetin" RELATED BRAND_NAME [ChemIDplus] +synonym: "cloramfenicol" RELATED INN [ChemIDplus] +synonym: "D-(-)-2,2-dichloro-N-(beta-hydroxy-alpha-(hydroxymethyl)-p-nitrophenylethyl)acetamide" RELATED [ChemIDplus] +synonym: "D-(-)-threo-1-p-nitrophenyl-2-dichloroacetylamino-1,3-propanediol" RELATED [ChemIDplus] +synonym: "Fenicol" RELATED BRAND_NAME [ChemIDplus] +synonym: "Globenicol" RELATED BRAND_NAME [ChemIDplus] +synonym: "Halomycetin" RELATED BRAND_NAME [ChemIDplus] +synonym: "InChI=1S/C11H12Cl2N2O5/c12-10(13)11(18)14-8(5-16)9(17)6-1-3-7(4-2-6)15(19)20/h1-4,8-10,16-17H,5H2,(H,14,18)/t8-,9-/m1/s1" RELATED InChI [ChEBI] +synonym: "laevomycetinum" RELATED [ChemIDplus] +synonym: "levomicetina" RELATED [ChemIDplus] +synonym: "levomycetin" RELATED [ChemIDplus] +synonym: "Oleomycetin" RELATED BRAND_NAME [ChemIDplus] +synonym: "Sificetina" RELATED BRAND_NAME [ChemIDplus] +synonym: "WIIZWVCIJKGZOK-RKDXNWHRSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:2225532 "Beilstein" +xref: CAS:56-75-7 "KEGG COMPOUND" +xref: colombos:CHLORAMFENICOL +xref: colombos:CHLORAMFENICOL\:+UNKNOWN +xref: Drug_Central:589 "DrugCentral" +xref: DrugBank:DB00446 +xref: KEGG:C00918 +xref: KEGG:D00104 +xref: LINCS:LSM-5256 +xref: Patent:GB795131 +xref: Patent:GB796901 +xref: Patent:US2483871 +xref: Patent:US2483884 +xref: Patent:US2483892 +xref: Patent:US2839577 +xref: PDBeChem:CLM +xref: PMID:11468347 "Europe PMC" +xref: PMID:12217690 "Europe PMC" +xref: PMID:16659995 "Europe PMC" +xref: PMID:16897441 "Europe PMC" +xref: PMID:17217404 "Europe PMC" +xref: PMID:17692887 "Europe PMC" +xref: PMID:18559535 "Europe PMC" +xref: PMID:18657290 "Europe PMC" +xref: PMID:18794387 "Europe PMC" +xref: PMID:23142491 "Europe PMC" +xref: PMID:23317719 "Europe PMC" +xref: PMID:23395526 "Europe PMC" +xref: PMID:23494278 "Europe PMC" +xref: PMID:23512826 "Europe PMC" +xref: PMID:657786 "Europe PMC" +xref: PMID:6653106 "Europe PMC" +xref: Wikipedia:Chloramphenicol +is_a: CHEBI:23824 ! diol +is_a: CHEBI:35716 ! C-nitro compound +is_a: CHEBI:36683 ! organochlorine compound +is_a: CHEBI:37622 ! carboxamide +relationship: has_role CHEBI:131604 ! Mycoplasma genitalium metabolite +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: has_role CHEBI:48001 ! protein synthesis inhibitor +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite + +[Term] +id: CHEBI:17716 +name: lactose +namespace: chebi_ontology +alt_id: CHEBI:10296 +alt_id: CHEBI:10380 +alt_id: CHEBI:14497 +alt_id: CHEBI:22460 +alt_id: CHEBI:22760 +alt_id: CHEBI:25005 +alt_id: CHEBI:27755 +alt_id: CHEBI:613009 +def: "A glycosylglucose disaccharide, found most notably in milk, that consists of D-galactose and D-glucose fragments bonded through a beta-1->4 glycosidic linkage. The glucose fragment can be in either the alpha- or beta-pyranose form, whereas the galactose fragment can only have the beta-pyranose form." [] +subset: 3_STAR +synonym: "(+)-lactose" RELATED [NIST_Chemistry_WebBook] +synonym: "(Gal)1 (Glc)1" RELATED [KEGG_GLYCAN] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-beta-D-Galactopyranosyl-4-D-glucopyranose" RELATED [KEGG_COMPOUND] +synonym: "342.116" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "342.29648" RELATED MASS [ChEBI] +synonym: "4-(beta-D-galactosido)-D-glucose" RELATED [NIST_Chemistry_WebBook] +synonym: "4-O-beta-D-galactopyranosyl-D-glucose" RELATED [IUPAC] +synonym: "beta-D-Gal-(1->4)-D-Glc" RELATED [KEGG_COMPOUND] +synonym: "beta-D-galactopyranosyl-(1->4)-D-glucopyranose" EXACT IUPAC_NAME [IUPAC] +synonym: "beta-D-Galp-(1->4)-D-Glcp" RELATED [IUPAC] +synonym: "beta-Gal1,4-Glc" RELATED [ChEBI] +synonym: "C12H22O11" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-lactose" RELATED [ChemIDplus] +synonym: "Galbeta1-4-Glc" RELATED [ChEBI] +synonym: "GUBGYTABKSRVRQ-QKKXKWKRSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C12H22O11/c13-1-3-5(15)6(16)9(19)12(22-3)23-10-4(2-14)21-11(20)8(18)7(10)17/h3-20H,1-2H2/t3-,4-,5+,6+,7-,8-,9-,10-,11?,12+/m1/s1" RELATED InChI [ChEBI] +synonym: "Lac" RELATED [JCBN] +synonym: "lactobiose" RELATED [NIST_Chemistry_WebBook] +synonym: "lactose" EXACT [UniProt] +synonym: "Laktobiose" RELATED [ChEBI] +synonym: "Laktose" RELATED [ChEBI] +synonym: "Milchzucker" RELATED [ChEBI] +synonym: "Milk sugar" RELATED [KEGG_COMPOUND] +synonym: "milk sugar" RELATED [NIST_Chemistry_WebBook] +synonym: "OC[C@H]1O[C@@H](O[C@@H]2[C@@H](CO)OC(O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +xref: Beilstein:1292745 "Beilstein" +xref: CAS:63-42-3 "KEGG COMPOUND" +xref: colombos:LACTOSE +xref: Gmelin:882872 "Gmelin" +xref: KEGG:C00243 +xref: KEGG:D00046 +xref: KEGG:G10504 +xref: KNApSAcK:C00001136 +xref: PMID:1292745 "Europe PMC" +xref: PMID:17329833 "Europe PMC" +xref: PMID:18300214 "Europe PMC" +xref: PMID:19053747 "ChEMBL" +xref: PMID:19846069 "Europe PMC" +xref: PMID:19913595 "Europe PMC" +xref: PMID:20094999 "Europe PMC" +xref: PMID:20503067 "Europe PMC" +xref: PMID:20699559 "Europe PMC" +xref: PMID:20873837 "Europe PMC" +xref: PMID:20961532 "Europe PMC" +xref: PMID:21403918 "Europe PMC" +xref: PMID:2432147 "Europe PMC" +xref: PMID:2456994 "Europe PMC" +xref: PMID:6194884 "Europe PMC" +xref: PMID:7574700 "Europe PMC" +xref: Reaxys:1292745 "Reaxys" +is_a: CHEBI:24405 ! glycosylglucose +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:17750 +name: glycine betaine +namespace: chebi_ontology +alt_id: CHEBI:13895 +alt_id: CHEBI:15264 +alt_id: CHEBI:22858 +alt_id: CHEBI:24370 +alt_id: CHEBI:27128 +alt_id: CHEBI:3073 +def: "The amino acid betaine derived from glycine." [] +subset: 3_STAR +synonym: "(trimethylammonio)acetate" EXACT IUPAC_NAME [IUPAC] +synonym: "(trimethylammoniumyl)acetate" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-carboxy-N,N,N-trimethylmethanaminium inner salt" RELATED [NIST_Chemistry_WebBook] +synonym: "117.079" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "117.14638" RELATED MASS [ChEBI] +synonym: "2-N,N,N-trimethylammonio acetate" RELATED [ChEBI] +synonym: "abromine" RELATED [ChemIDplus] +synonym: "acidol" RELATED [ChEBI] +synonym: "Bet" RELATED [ChEBI] +synonym: "Betaine" RELATED [KEGG_COMPOUND] +synonym: "betaine" RELATED [UniProt] +synonym: "C5H11NO2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C[N+](C)(C)CC([O-])=O" RELATED SMILES [ChEBI] +synonym: "Glycine betaine" EXACT [KEGG_COMPOUND] +synonym: "InChI=1S/C5H11NO2/c1-6(2,3)4-5(7)8/h4H2,1-3H3" RELATED InChI [ChEBI] +synonym: "KWIUHFFTVRNATP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "N,N,N-trimethylammonioacetate" RELATED [IUPAC] +synonym: "N,N,N-Trimethylglycine" RELATED [KEGG_COMPOUND] +synonym: "Trimethylaminoacetate" RELATED [KEGG_COMPOUND] +synonym: "Trimethylammonioacetate" RELATED [KEGG_COMPOUND] +synonym: "trimethylglycine" RELATED [ChEBI] +synonym: "trimethylglycocoll" RELATED [ChemIDplus] +xref: Beilstein:3537113 "Beilstein" +xref: CAS:107-43-7 "ChemIDplus" +xref: colombos:GLYCINEBETAINE +xref: Drug_Central:347 "DrugCentral" +xref: Gmelin:26434 "Gmelin" +xref: HMDB:HMDB00043 +xref: KEGG:C00719 +xref: KEGG:D07523 +xref: KNApSAcK:C00007291 +xref: MetaCyc:BETAINE +xref: PDBeChem:BET +xref: PMID:16197300 "Europe PMC" +xref: PMID:18326594 "Europe PMC" +xref: PMID:20346934 "Europe PMC" +xref: PMID:20446114 "Europe PMC" +xref: PMID:20642826 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: Reaxys:3537113 "Reaxys" +xref: Wikipedia:Trimethylglycine +xref: YMDB:YMDB01516 +is_a: CHEBI:22860 ! amino-acid betaine +is_a: CHEBI:24373 ! glycine derivative +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:41139 ! N,N,N-trimethylglycinium + +[Term] +id: CHEBI:17754 +name: glycerol +namespace: chebi_ontology +alt_id: CHEBI:131422 +alt_id: CHEBI:14334 +alt_id: CHEBI:24351 +alt_id: CHEBI:42998 +alt_id: CHEBI:5448 +def: "A triol with a structure of propane substituted at positions 1, 2 and 3 by hydroxy groups." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,2,3-Propanetriol" RELATED [KEGG_COMPOUND] +synonym: "1,2,3-Trihydroxypropane" RELATED [KEGG_COMPOUND] +synonym: "92.047" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "92.09382" RELATED MASS [ChEBI] +synonym: "C3H8O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Glycerin" RELATED [KEGG_COMPOUND] +synonym: "glycerine" RELATED [ChEBI] +synonym: "Glyceritol" RELATED [HMDB] +synonym: "GLYCEROL" EXACT [PDBeChem] +synonym: "Glycerol" EXACT [KEGG_COMPOUND] +synonym: "glycerol" EXACT [UniProt] +synonym: "glycerol" EXACT [ChEBI] +synonym: "glycerol" RELATED INN [ChemIDplus] +synonym: "glycerolum" RELATED INN [ChemIDplus] +synonym: "glycyl alcohol" RELATED [NIST_Chemistry_WebBook] +synonym: "Glyzerin" RELATED [ChEBI] +synonym: "Gro" RELATED [JCBN] +synonym: "InChI=1S/C3H8O3/c4-1-3(6)2-5/h3-6H,1-2H2" RELATED InChI [ChEBI] +synonym: "OCC(O)CO" RELATED SMILES [ChEBI] +synonym: "Oelsuess" RELATED [ChEBI] +synonym: "PEDCQBHIVMGVHV-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "propane-1,2,3-triol" EXACT IUPAC_NAME [IUPAC] +synonym: "Propanetriol" RELATED [HMDB] +synonym: "Trihydroxypropane" RELATED [HMDB] +xref: Beilstein:635685 "Beilstein" +xref: CAS:56-81-5 "ChemIDplus" +xref: colombos:GLYCEROL +xref: Drug_Central:1316 "DrugCentral" +xref: DrugBank:DB04077 +xref: ECMDB:ECMDB00131 +xref: Gmelin:26279 "Gmelin" +xref: HMDB:HMDB00131 +xref: KEGG:C00116 +xref: KEGG:D00028 +xref: KNApSAcK:C00001163 +xref: LINCS:LSM-37180 +xref: MetaCyc:GLYCEROL +xref: PDB:2AJS +xref: PDB:2D03 +xref: PDBeChem:GOL +xref: PMID:11958517 "Europe PMC" +xref: PMID:12672239 "ChEMBL" +xref: PMID:12689633 "Europe PMC" +xref: PMID:14559393 "Europe PMC" +xref: PMID:14563847 "Europe PMC" +xref: PMID:15342117 "Europe PMC" +xref: PMID:15786693 "Europe PMC" +xref: PMID:16244855 "Europe PMC" +xref: PMID:16258193 "Europe PMC" +xref: PMID:16319039 "Europe PMC" +xref: PMID:16349488 "Europe PMC" +xref: PMID:16651733 "Europe PMC" +xref: PMID:16664750 "Europe PMC" +xref: PMID:16901854 "Europe PMC" +xref: PMID:17336832 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:17979222 "Europe PMC" +xref: PMID:19184438 "Europe PMC" +xref: PMID:19231894 "Europe PMC" +xref: PMID:19460032 "Europe PMC" +xref: PMID:19548674 "Europe PMC" +xref: PMID:19795216 "Europe PMC" +xref: PMID:19956799 "Europe PMC" +xref: PMID:22705534 "Europe PMC" +xref: PMID:23562176 "Europe PMC" +xref: PMID:23747440 "Europe PMC" +xref: PMID:24643482 "Europe PMC" +xref: PMID:25108762 "Europe PMC" +xref: PMID:7031247 "ChEMBL" +xref: PMID:7392035 "ChEMBL" +xref: Reaxys:635685 "Reaxys" +xref: UM-BBD_compID:c0066 "UM-BBD" +xref: Wikipedia:Glycerol +xref: YMDB:YMDB00283 +is_a: CHEBI:17522 ! alditol +is_a: CHEBI:27136 ! triol +relationship: has_role CHEBI:25728 ! osmolyte +relationship: has_role CHEBI:27780 ! detergent +relationship: has_role CHEBI:46787 ! solvent +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: MCO:0000858 MCO:0000864 ! sucrose 15% carbon source + +[Term] +id: CHEBI:17774 +name: pimelate(1-) +namespace: chebi_ontology +alt_id: CHEBI:12209 +alt_id: CHEBI:20708 +alt_id: CHEBI:2175 +def: "A dicarboxylic acid monoanion that is the conjugate base of pimelic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "159.066" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "159.15984" RELATED MASS [ChEBI] +synonym: "6-carboxyhexanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "C7H11O4" RELATED FORMULA [ChEBI] +synonym: "heptanedioate" RELATED [ChEBI] +synonym: "hydrogen pimelate" RELATED [ChEBI] +synonym: "InChI=1S/C7H12O4/c8-6(9)4-2-1-3-5-7(10)11/h1-5H2,(H,8,9)(H,10,11)/p-1" RELATED InChI [ChEBI] +synonym: "OC(=O)CCCCCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "Pimelate" RELATED [KEGG_COMPOUND] +synonym: "WLJVNTCWHIRURA-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Gmelin:1449709 "Gmelin" +is_a: CHEBI:133773 ! pimelate +is_a: CHEBI:35695 ! dicarboxylic acid monoanion +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:36165 ! pimelate(2-) + +[Term] +id: CHEBI:17790 +name: methanol +namespace: chebi_ontology +alt_id: CHEBI:14588 +alt_id: CHEBI:25227 +alt_id: CHEBI:44080 +alt_id: CHEBI:44553 +alt_id: CHEBI:6816 +def: "The primary alcohol that is the simplest aliphatic alcohol, comprising a methyl and an alcohol group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "32.026" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "32.04186" RELATED MASS [ChEBI] +synonym: "carbinol" RELATED [ChemIDplus] +synonym: "CH3OH" RELATED [ChEBI] +synonym: "CH4O" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CO" RELATED SMILES [ChEBI] +synonym: "InChI=1S/CH4O/c1-2/h2H,1H3" RELATED InChI [ChEBI] +synonym: "MeOH" RELATED [ChEBI] +synonym: "METHANOL" EXACT [PDBeChem] +synonym: "Methanol" EXACT [KEGG_COMPOUND] +synonym: "methanol" EXACT [UniProt] +synonym: "methanol" EXACT IUPAC_NAME [IUPAC] +synonym: "Methyl alcohol" RELATED [KEGG_COMPOUND] +synonym: "Methylalkohol" RELATED [NIST_Chemistry_WebBook] +synonym: "OKKJLVBELUTLKV-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "spirit of wood" RELATED [HMDB] +synonym: "wood alcohol" RELATED [ChemIDplus] +synonym: "wood naphtha" RELATED [ChemIDplus] +synonym: "wood spirit" RELATED [NIST_Chemistry_WebBook] +xref: Beilstein:1098229 "Beilstein" +xref: CAS:67-56-1 "NIST Chemistry WebBook" +xref: Gmelin:449 "Gmelin" +xref: HMDB:HMDB01875 +xref: KEGG:C00132 +xref: KEGG:D02309 +xref: MetaCyc:METOH +xref: PDBeChem:MOH +xref: PMID:11141607 "Europe PMC" +xref: PMID:11430978 "Europe PMC" +xref: PMID:11489599 "Europe PMC" +xref: PMID:11680737 "Europe PMC" +xref: PMID:11684179 "Europe PMC" +xref: PMID:14012711 "Europe PMC" +xref: PMID:14678513 "Europe PMC" +xref: PMID:14760634 "Europe PMC" +xref: PMID:15172721 "Europe PMC" +xref: PMID:15906011 "Europe PMC" +xref: PMID:16705261 "Europe PMC" +xref: PMID:17451998 "Europe PMC" +xref: PMID:17733096 "Europe PMC" +xref: PMID:19064074 "Europe PMC" +xref: PMID:19850112 "Europe PMC" +xref: PMID:20314698 "Europe PMC" +xref: Reaxys:1098229 "Reaxys" +xref: UM-BBD_compID:c0132 "ChEBI" +xref: Wikipedia:Methanol +is_a: CHEBI:15734 ! primary alcohol +is_a: CHEBI:50584 ! alkyl alcohol +is_a: CHEBI:64708 ! one-carbon compound +relationship: has_role CHEBI:131604 ! Mycoplasma genitalium metabolite +relationship: has_role CHEBI:33292 ! fuel +relationship: has_role CHEBI:48360 ! amphiprotic solvent +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:52090 ! methoxide + +[Term] +id: CHEBI:17796 +name: L-idonate +namespace: chebi_ontology +alt_id: CHEBI:13126 +alt_id: CHEBI:21335 +alt_id: CHEBI:57659 +alt_id: CHEBI:58494 +alt_id: CHEBI:6250 +def: "An optically active form of idonate having L-configuration; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "195.050" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "195.14730" RELATED MASS [ChEBI] +synonym: "C6H11O7" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H12O7/c7-1-2(8)3(9)4(10)5(11)6(12)13/h2-5,7-11H,1H2,(H,12,13)/p-1/t2-,3+,4-,5+/m0/s1" RELATED InChI [ChEBI] +synonym: "L-Idonate" EXACT [KEGG_COMPOUND] +synonym: "L-idonate" EXACT [UniProt] +synonym: "L-idonate" EXACT IUPAC_NAME [IUPAC] +synonym: "OC[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "RGHNJXZEOKUKBD-SKNVOMKLSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3906522 "Beilstein" +xref: CAS:1114-17-6 "KEGG COMPOUND" +xref: KEGG:C00770 +xref: MetaCyc:L-IDONATE +is_a: CHEBI:33529 ! idonate +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_base_of CHEBI:21336 ! L-idonic acid + +[Term] +id: CHEBI:17821 +name: thymine +namespace: chebi_ontology +alt_id: CHEBI:15247 +alt_id: CHEBI:27004 +alt_id: CHEBI:46017 +alt_id: CHEBI:9580 +def: "A pyrimidine nucleobase that is uracil in which the hydrogen at position 5 is replaced by a methyl group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "126.043" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "126.11342" RELATED MASS [ChEBI] +synonym: "2,4-dihydroxy-5-methylpyrimidine" RELATED [NIST_Chemistry_WebBook] +synonym: "5-methyl-2,4(1H,3H)-pyrimidinedione" RELATED [NIST_Chemistry_WebBook] +synonym: "5-methylpyrimidine-2,4(1H,3H)-dione" RELATED [IUPAC] +synonym: "5-Methyluracil" RELATED [KEGG_COMPOUND] +synonym: "5-methyluracil" RELATED [NIST_Chemistry_WebBook] +synonym: "C5H6N2O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cc1c[nH]c(=O)[nH]c1=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C5H6N2O2/c1-3-2-6-5(9)7-4(3)8/h2H,1H3,(H2,6,7,8,9)" RELATED InChI [ChEBI] +synonym: "RWQNBRDOKXIBIV-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "T" RELATED [ChEBI] +synonym: "Thy" RELATED [CBN] +synonym: "Thymin" RELATED [ChemIDplus] +synonym: "THYMINE" EXACT [PDBeChem] +synonym: "Thymine" EXACT [KEGG_COMPOUND] +synonym: "thymine" EXACT [UniProt] +synonym: "thymine" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:607626 "Beilstein" +xref: CAS:65-71-4 "NIST Chemistry WebBook" +xref: colombos:THYMINE +xref: DrugBank:DB03462 +xref: Gmelin:278790 "Gmelin" +xref: KEGG:C00178 +xref: KNApSAcK:C00001511 +xref: PDBeChem:TDR +xref: PMID:23237383 "Europe PMC" +xref: Wikipedia:Thymine +is_a: CHEBI:26432 ! pyrimidine nucleobase +is_a: CHEBI:38337 ! pyrimidone +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:17822 +name: serine +namespace: chebi_ontology +alt_id: CHEBI:15081 +alt_id: CHEBI:26648 +alt_id: CHEBI:9116 +def: "An alpha-amino acid that is alanine substituted at position 3 by a hydroxy group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "105.043" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "105.09262" RELATED MASS [ChEBI] +synonym: "2-amino-3-hydroxypropanoic acid" RELATED [IUPAC] +synonym: "2-Amino-3-hydroxypropionic acid" RELATED [KEGG_COMPOUND] +synonym: "3-Hydroxyalanine" RELATED [KEGG_COMPOUND] +synonym: "C3H7NO3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)" RELATED InChI [ChEBI] +synonym: "MTCFGRXMJLQNBG-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "NC(CO)C(O)=O" RELATED SMILES [ChEBI] +synonym: "Serin" RELATED [ChEBI] +synonym: "Serine" EXACT [KEGG_COMPOUND] +synonym: "serine" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:1721402 "Beilstein" +xref: CAS:302-84-1 "KEGG COMPOUND" +xref: Gmelin:26429 "Gmelin" +xref: KEGG:C00716 +xref: KNApSAcK:C00001393 +xref: Reaxys:1721402 "Reaxys" +xref: Wikipedia:Serine +is_a: CHEBI:33704 ! alpha-amino acid +relationship: has_part CHEBI:24712 ! hydroxymethyl group +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:32845 ! serinate +relationship: is_conjugate_base_of CHEBI:32846 ! serinium +relationship: is_tautomer_of CHEBI:35243 ! serine zwitterion +relationship: MCO:0000858 MCO:0000864 ! sucrose 15% carbon source + +[Term] +id: CHEBI:17833 +name: gentamycin +namespace: chebi_ontology +alt_id: CHEBI:14293 +alt_id: CHEBI:24206 +alt_id: CHEBI:24212 +alt_id: CHEBI:5306 +def: "Any of a group of aminoglycoside antibiotics produced by fermentation of some Micromonospora spp." [] +subset: 3_STAR +synonym: "4,6-diamino-3-[3-deoxy-4-C-methyl-3-(methylamino)pentopyranosyloxy]-2-hydroxycyclohexyl 2-amino-2,3,4,6,7-pentadeoxy-6-(methylamino)heptopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "Gentamicin" RELATED [KEGG_COMPOUND] +synonym: "gentamicin" RELATED [UniProt] +synonym: "gentamycins" RELATED [ChEBI] +xref: CAS:1403-66-3 "KEGG COMPOUND" +xref: colombos:GENTAMICIN +xref: DrugBank:DB00798 +xref: KEGG:C00505 +is_a: CHEBI:22479 ! amino cyclitol glycoside +is_a: CHEBI:22507 ! aminoglycoside antibiotic + +[Term] +id: CHEBI:17836 +name: 4-aminobenzoate +namespace: chebi_ontology +alt_id: CHEBI:11959 +alt_id: CHEBI:20314 +def: "An aromatic amino-acid anion that is the conjugate base of 4-aminobenzoic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "136.040" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "136.12860" RELATED MASS [ChEBI] +synonym: "4-aminobenzoate" EXACT IUPAC_NAME [IUPAC] +synonym: "4-aminobenzoate" EXACT [UniProt] +synonym: "4-aminobenzoic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "ALYNCZNDIQEVRV-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "C7H6NO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C7H7NO2/c8-6-3-1-5(2-4-6)7(9)10/h1-4H,8H2,(H,9,10)/p-1" RELATED InChI [ChEBI] +synonym: "Nc1ccc(cc1)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "p-aminobenzoate" RELATED [ChemIDplus] +xref: Beilstein:3904778 "Beilstein" +xref: CAS:2906-28-7 "ChemIDplus" +xref: Gmelin:82609 "Gmelin" +xref: KEGG:C00568 "ChEBI" +xref: Reaxys:3904778 "Reaxys" +xref: UM-BBD_compID:c0550 "ChEBI" +is_a: CHEBI:22494 ! aminobenzoate +is_a: CHEBI:63473 ! aromatic amino-acid anion +relationship: has_functional_parent CHEBI:16150 ! benzoate +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_base_of CHEBI:30753 ! 4-aminobenzoic acid + +[Term] +id: CHEBI:17879 +name: 4-hydroxybenzoate +namespace: chebi_ontology +alt_id: CHEBI:12003 +alt_id: CHEBI:20397 +def: "The conjugate base of 4-hydroxybenzoic acid, comprising a 4-hydroxybenzoic acid core with a proton missing to give a charge of -1." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "137.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "137.11280" RELATED MASS [ChEBI] +synonym: "4-hydroxybenzoate" EXACT [UniProt] +synonym: "4-hydroxybenzoate" EXACT IUPAC_NAME [IUPAC] +synonym: "4-hydroxybenzoic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "C7H5O3" RELATED FORMULA [ChEBI] +synonym: "FJKROLUGYXJWQN-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C7H6O3/c8-6-3-1-5(2-4-6)7(9)10/h1-4,8H,(H,9,10)/p-1" RELATED InChI [ChEBI] +synonym: "Oc1ccc(cc1)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "p-hydroxybenzoate" RELATED [ChemIDplus] +xref: Beilstein:3589159 "Beilstein" +xref: CAS:456-23-5 "ChemIDplus" +xref: Gmelin:326508 "Gmelin" +xref: KEGG:C00156 "ChEBI" +xref: Reaxys:3589159 "Reaxys" +xref: UM-BBD_compID:c0104 "ChEBI" +is_a: CHEBI:25388 ! monohydroxybenzoate +relationship: has_functional_parent CHEBI:16150 ! benzoate +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: is_conjugate_base_of CHEBI:30763 ! 4-hydroxybenzoic acid + +[Term] +id: CHEBI:17883 +name: hydrogen chloride +namespace: chebi_ontology +alt_id: CHEBI:13364 +alt_id: CHEBI:24635 +alt_id: CHEBI:5590 +def: "A mononuclear parent hydride consisting of covalently bonded hydrogen and chlorine atoms." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "35.977" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "35.977" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "36.46064" RELATED MASS [ChEBI] +synonym: "[HCl]" RELATED [IUPAC] +synonym: "chlorane" EXACT IUPAC_NAME [IUPAC] +synonym: "chloridohydrogen" EXACT IUPAC_NAME [IUPAC] +synonym: "chlorure d'hydrogene" RELATED [ChEBI] +synonym: "Chlorwasserstoff" RELATED [ChEBI] +synonym: "Cl[H]" RELATED SMILES [ChEBI] +synonym: "ClH" RELATED FORMULA [ChEBI] +synonym: "cloruro de hidrogeno" RELATED [ChEBI] +synonym: "HCl" RELATED FORMULA [KEGG_COMPOUND] +synonym: "HCl" RELATED [KEGG_COMPOUND] +synonym: "HCl" RELATED [UniProt] +synonym: "hydrochloric acid" RELATED [ChemIDplus] +synonym: "Hydrochloride" RELATED [KEGG_COMPOUND] +synonym: "Hydrogen chloride" EXACT [KEGG_COMPOUND] +synonym: "hydrogen chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "Hydrogenchlorid" RELATED [ChEBI] +synonym: "InChI=1S/ClH/h1H" RELATED InChI [ChEBI] +synonym: "VEXZGXHMUGYJMC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Wasserstoffchlorid" RELATED [ChEBI] +xref: CAS:7647-01-0 "KEGG COMPOUND" +xref: Drug_Central:4568 "DrugCentral" +xref: Gmelin:322 "Gmelin" +xref: HMDB:HMDB02306 +xref: KEGG:C01327 +xref: KEGG:D02057 +xref: MetaCyc:HCL +xref: PMID:15823700 "Europe PMC" +xref: PMID:17492841 "Europe PMC" +xref: PMID:22804993 "Europe PMC" +xref: Reaxys:1098214 "Reaxys" +xref: Wikipedia:HCl +xref: Wikipedia:Hydrochloric_acid +is_a: CHEBI:18140 ! hydrogen halide +is_a: CHEBI:23117 ! chlorine molecular entity +is_a: CHEBI:37176 ! mononuclear parent hydride +relationship: is_conjugate_acid_of CHEBI:17996 ! chloride +relationship: is_conjugate_base_of CHEBI:50315 ! chloronium + +[Term] +id: CHEBI:17891 +name: donor +namespace: chebi_ontology +alt_id: CHEBI:14202 +alt_id: CHEBI:4697 +def: "A molecular entity that can transfer (\"donate\") an electron, a pair of electrons, an atom or a group to another molecular entity." [] +subset: 3_STAR +synonym: "Donator" RELATED [ChEBI] +synonym: "donneur" RELATED [ChEBI] +synonym: "Donor" EXACT [KEGG_COMPOUND] +synonym: "donor" EXACT [UniProt] +xref: KEGG:C01351 +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:17939 +name: puromycin +namespace: chebi_ontology +alt_id: CHEBI:14970 +alt_id: CHEBI:26402 +alt_id: CHEBI:45182 +alt_id: CHEBI:8641 +def: "An aminonucleoside antibiotic, derived from the Streptomyces alboniger bacterium, that causes premature chain termination during translation taking place in the ribosome." [] +subset: 3_STAR +synonym: "(S)-3'-((2-Amino-3-(4-methoxyphenyl)-1-oxopropyl)amino)-3'-deoxy-N,N-dimethyladenosine" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3'-(L-alpha-Amino-p-methoxyhydrocinnamamido)-3'-deoxy-N,N-dimethyladenosine" RELATED [ChemIDplus] +synonym: "3'-[[(2S)-2-amino-3-(4-methoxyphenyl)-1-oxopropyl]amino]-3'-deoxy-N,N-diemthyladenosine" RELATED [ChEBI] +synonym: "3'-deoxy-N,N-dimethyl-3'-(O-methyl-L-tyrosinamido)adenosine" EXACT IUPAC_NAME [IUPAC] +synonym: "471.223" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "471.50984" RELATED MASS [ChEBI] +synonym: "9-{3-deoxy-3-[(O-methyl-L-tyrosyl)amino]-beta-D-xylofuranosyl}-N,N-dimethyl-9H-purin-6-amine" RELATED [ChEBI] +synonym: "Achromycin" RELATED [ChemIDplus] +synonym: "C22H29N7O5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "COc1ccc(C[C@H](N)C(=O)N[C@@H]2[C@@H](CO)O[C@H]([C@@H]2O)n2cnc3c(ncnc23)N(C)C)cc1" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C22H29N7O5/c1-28(2)19-17-20(25-10-24-19)29(11-26-17)22-18(31)16(15(9-30)34-22)27-21(32)14(23)8-12-4-6-13(33-3)7-5-12/h4-7,10-11,14-16,18,22,30-31H,8-9,23H2,1-3H3,(H,27,32)/t14-,15+,16+,18+,22+/m0/s1" RELATED InChI [ChEBI] +synonym: "puromicina" RELATED INN [ChemIDplus] +synonym: "Puromycin" EXACT [KEGG_COMPOUND] +synonym: "puromycin" RELATED INN [ChemIDplus] +synonym: "puromycine" RELATED INN [ChemIDplus] +synonym: "puromycinum" RELATED INN [ChemIDplus] +synonym: "RXWNCPJZOCPEPQ-NVWDDTSBSA-N" RELATED InChIKey [ChEBI] +xref: CAS:53-79-2 "KEGG COMPOUND" +xref: colombos:PUROMYCIN +xref: colombos:PUROMYCIN\:+UNKNOWN +xref: DrugBank:DB08437 +xref: KEGG:C01610 +xref: KEGG:D05653 +xref: KNApSAcK:C00001507 +xref: LINCS:LSM-2788 +xref: PMID:13945541 "Europe PMC" +xref: PMID:15843471 "Europe PMC" +xref: PMID:18322149 "Europe PMC" +xref: PMID:323854 "Europe PMC" +xref: Reaxys:70234 "Reaxys" +xref: Wikipedia:Puromycin +is_a: CHEBI:26404 ! puromycins +relationship: has_role CHEBI:35441 ! antiinfective agent +relationship: has_role CHEBI:35610 ! antineoplastic agent +relationship: has_role CHEBI:48001 ! protein synthesis inhibitor +relationship: has_role CHEBI:76891 ! EC 3.4.11.14 (cytosol alanyl aminopeptidase) inhibitor +relationship: has_role CHEBI:76893 ! EC 3.4.14.2 (dipeptidyl-peptidase II) inhibitor +relationship: is_conjugate_base_of CHEBI:60255 ! puromycin(1+) + +[Term] +id: CHEBI:17968 +name: butyrate +namespace: chebi_ontology +alt_id: CHEBI:13924 +alt_id: CHEBI:22946 +def: "A short-chain fatty acid anion that is the conjugate base of butyric acid, obtained by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "1-butanoate" RELATED [ChEBI] +synonym: "1-butyrate" RELATED [ChEBI] +synonym: "1-propanecarboxylate" RELATED [ChEBI] +synonym: "87.045" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "87.09718" RELATED MASS [ChEBI] +synonym: "butanate" RELATED [ChEBI] +synonym: "butanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "butanoate" RELATED [ChEBI] +synonym: "butanoate" RELATED [UniProt] +synonym: "butanoic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "butyrate" EXACT [IUPAC] +synonym: "C4H7O2" RELATED FORMULA [ChEBI] +synonym: "CCCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "CH3-[CH2]2-COO(-)" RELATED [IUPAC] +synonym: "FERIUCNNQQJTOY-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H8O2/c1-2-3-4(5)6/h2-3H2,1H3,(H,5,6)/p-1" RELATED InChI [ChEBI] +synonym: "n-butanoate" RELATED [ChEBI] +synonym: "n-butyrate" RELATED [ChemIDplus] +synonym: "propanecarboxylate" RELATED [ChEBI] +synonym: "propylformate" RELATED [ChEBI] +xref: Beilstein:3601060 "Beilstein" +xref: CAS:461-55-2 "ChemIDplus" +xref: Gmelin:324289 "Gmelin" +xref: KEGG:C00246 "ChEBI" +xref: MetaCyc:BUTYRIC_ACID +xref: PMID:17190852 "Europe PMC" +xref: PMID:7496326 "Europe PMC" +xref: Reaxys:3601060 "Reaxys" +xref: UM-BBD_compID:c0035 "ChEBI" +is_a: CHEBI:78115 ! fatty acid anion 4:0 +relationship: has_role CHEBI:61115 ! EC 3.5.1.98 (histone deacetylase) inhibitor +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:30772 ! butyric acid + +[Term] +id: CHEBI:17972 +name: ribonucleoside triphosphate +namespace: chebi_ontology +alt_id: CHEBI:15047 +alt_id: CHEBI:26559 +alt_id: CHEBI:8846 +subset: 3_STAR +synonym: "0" RELATED CHARGE [KEGG_COMPOUND] +synonym: "372.949" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "373.063" RELATED MASS [KEGG_COMPOUND] +synonym: "C5H12O13P3R" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Ribonucleoside triphosphate" EXACT [KEGG_COMPOUND] +synonym: "ribonucleoside triphosphates" RELATED [ChEBI] +xref: KEGG:C03802 +is_a: CHEBI:17326 ! nucleoside triphosphate + +[Term] +id: CHEBI:17981 +name: O-acetyl-L-serine +namespace: chebi_ontology +alt_id: CHEBI:12685 +alt_id: CHEBI:12710 +alt_id: CHEBI:12724 +alt_id: CHEBI:21938 +alt_id: CHEBI:44568 +alt_id: CHEBI:7668 +def: "An acetyl-L-serine where the acetyl group is attached to the side-chain oxygen. It is an intermediate in the biosynthesis of the amino acid cysteine in bacteria." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "147.053" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "147.12930" RELATED MASS [ChEBI] +synonym: "C5H9NO4" RELATED FORMULA [ChEBI] +synonym: "CC(=O)OC[C@H](N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C5H9NO4/c1-3(7)10-2-4(6)5(8)9/h4H,2,6H2,1H3,(H,8,9)/t4-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-Serine, acetate (ester)" RELATED [ChemIDplus] +synonym: "O-Acetyl-L-serine" EXACT [KEGG_COMPOUND] +synonym: "O-acetyl-L-serine" EXACT [ChEBI] +synonym: "O-acetyl-L-serine" EXACT IUPAC_NAME [IUPAC] +synonym: "O3-Acetyl-L-serine" RELATED [KEGG_COMPOUND] +synonym: "O3-acetyl-L-serine" RELATED [ChEBI] +synonym: "VZXPDPZARILFQX-BYPYZUCNSA-N" RELATED InChIKey [ChEBI] +xref: CAS:5147-00-2 "KEGG COMPOUND" +xref: DrugBank:DB01837 +xref: HMDB:HMDB03011 +xref: KEGG:C00979 +xref: KNApSAcK:C00007459 +xref: MetaCyc:ACETYLSERINE +xref: PDBeChem:OAS +xref: PMID:23483228 "Europe PMC" +xref: Reaxys:1723791 "Reaxys" +xref: Wikipedia:O-Acetylserine +is_a: CHEBI:22194 ! acetyl-L-serine +is_a: CHEBI:47622 ! acetate ester +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76969 ! bacterial metabolite +relationship: is_tautomer_of CHEBI:58340 ! O-acetyl-L-serine zwitterion + +[Term] +id: CHEBI:17984 +name: acyl-CoA +namespace: chebi_ontology +alt_id: CHEBI:13727 +alt_id: CHEBI:13802 +alt_id: CHEBI:22223 +alt_id: CHEBI:2455 +def: "A thioester that results from the formal condensation of the thiol group of coenzyme A with the carboxy group of any carboxylic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "794.102" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "794.53600" RELATED MASS [ChEBI] +synonym: "Acyl coenzyme A" RELATED [KEGG_COMPOUND] +synonym: "Acyl-CoA" EXACT [KEGG_COMPOUND] +synonym: "C22H35N7O17P3SR" RELATED FORMULA [ChEBI] +synonym: "CC(C)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC([*])=O" RELATED SMILES [ChEBI] +xref: CAS:9029-97-4 "KEGG COMPOUND" +xref: KEGG:C00040 +xref: PMID:11264983 "Europe PMC" +xref: PMID:11524729 "Europe PMC" +xref: PMID:16495773 "Europe PMC" +xref: PMID:21514367 "Europe PMC" +xref: PMID:21541677 "Europe PMC" +is_a: CHEBI:51277 ! thioester +relationship: has_functional_parent CHEBI:15346 ! coenzyme A +relationship: has_role CHEBI:62049 ! acyl donor +relationship: is_conjugate_acid_of CHEBI:58342 ! acyl-CoA(4-) + +[Term] +id: CHEBI:17992 +name: sucrose +namespace: chebi_ontology +alt_id: CHEBI:15128 +alt_id: CHEBI:26812 +alt_id: CHEBI:45795 +alt_id: CHEBI:9314 +def: "Sucrose is a disaccharide formed by glucose and fructose units joined by an acetal oxygen bridge from hemiacetal of glucose to the hemiketal of the fructose." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-alpha-D-Glucopyranosyl-2-beta-D-fructofuranoside" RELATED [KEGG_COMPOUND] +synonym: "342.116" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "342.29650" RELATED MASS [ChEBI] +synonym: "beta-D-fructofuranosyl alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "beta-D-Fruf-(2<->1)-alpha-D-Glcp" RELATED [JCBN] +synonym: "C12H22O11" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cane sugar" RELATED [KEGG_COMPOUND] +synonym: "CZMRCDWAGMRECN-UGDNZRGBSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C12H22O11/c13-1-4-6(16)8(18)9(19)11(21-4)23-12(3-15)10(20)7(17)5(2-14)22-12/h4-11,13-20H,1-3H2/t4-,5-,6-,7-,8+,9-,10+,11-,12+/m1/s1" RELATED InChI [ChEBI] +synonym: "OC[C@H]1O[C@H](O[C@]2(CO)O[C@H](CO)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "sacarosa" RELATED [ChEBI] +synonym: "Saccharose" RELATED [KEGG_COMPOUND] +synonym: "Sacharose" RELATED [ChEBI] +synonym: "SUCROSE" EXACT [PDBeChem] +synonym: "Sucrose" EXACT [KEGG_COMPOUND] +synonym: "sucrose" EXACT [UniProt] +synonym: "table sugar" RELATED [ChemIDplus] +synonym: "White sugar" RELATED [HMDB] +xref: Beilstein:90825 "Beilstein" +xref: CAS:57-50-1 "ChemIDplus" +xref: colombos:SUCROSE +xref: Drug_Central:4610 "DrugCentral" +xref: DrugBank:DB02772 +xref: Gmelin:97695 "Gmelin" +xref: HMDB:HMDB00258 +xref: KEGG:C00089 +xref: KEGG:D00025 +xref: KEGG:D06533 +xref: KEGG:G00370 +xref: KNApSAcK:C00001151 +xref: MetaCyc:SUCROSE +xref: PDBeChem:SUC +xref: PMID:11021636 "Europe PMC" +xref: PMID:11093712 "Europe PMC" +xref: PMID:11111003 "Europe PMC" +xref: PMID:12065720 "Europe PMC" +xref: PMID:12706980 "Europe PMC" +xref: PMID:13508893 "Europe PMC" +xref: PMID:15291457 "Europe PMC" +xref: PMID:15660210 "Europe PMC" +xref: PMID:15792978 "Europe PMC" +xref: PMID:15845855 "Europe PMC" +xref: PMID:16228482 "Europe PMC" +xref: PMID:16304615 "Europe PMC" +xref: PMID:16313996 "Europe PMC" +xref: PMID:16525719 "Europe PMC" +xref: PMID:16660545 "Europe PMC" +xref: PMID:16663947 "Europe PMC" +xref: PMID:16665852 "Europe PMC" +xref: PMID:17233733 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:17597061 "Europe PMC" +xref: PMID:18625236 "Europe PMC" +xref: PMID:19199566 "Europe PMC" +xref: PMID:19726178 "Europe PMC" +xref: PMID:21703290 "Europe PMC" +xref: PMID:21972845 "Europe PMC" +xref: PMID:22085755 "Europe PMC" +xref: PMID:22311778 "Europe PMC" +xref: PMID:22404833 "Europe PMC" +xref: PMID:22751876 "Europe PMC" +xref: Reaxys:1435311 "Reaxys" +xref: Reaxys:90825 "Reaxys" +xref: Wikipedia:Sucrose +is_a: CHEBI:24407 ! glycosyl glycoside +relationship: has_role CHEBI:25728 ! osmolyte +relationship: has_role CHEBI:50505 ! sweetening agent +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:84735 ! algal metabolite + +[Term] +id: CHEBI:17996 +name: chloride +namespace: chebi_ontology +alt_id: CHEBI:13291 +alt_id: CHEBI:13970 +alt_id: CHEBI:3616 +alt_id: CHEBI:3731 +alt_id: CHEBI:48804 +def: "A halide anion formed when chlorine picks up an electron to form an an anion." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "34.969" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "35.45270" RELATED MASS [ChEBI] +synonym: "[Cl-]" RELATED SMILES [ChEBI] +synonym: "Chloride" EXACT [KEGG_COMPOUND] +synonym: "chloride" EXACT [UniProt] +synonym: "chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "CHLORIDE ION" RELATED [PDBeChem] +synonym: "Chloride ion" RELATED [KEGG_COMPOUND] +synonym: "Chloride(1-)" RELATED [ChemIDplus] +synonym: "chloride(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "Chlorine anion" RELATED [NIST_Chemistry_WebBook] +synonym: "Cl" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cl(-)" RELATED [IUPAC] +synonym: "Cl-" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/ClH/h1H/p-1" RELATED InChI [ChEBI] +synonym: "VEXZGXHMUGYJMC-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3587171 "Beilstein" +xref: CAS:16887-00-6 "KEGG COMPOUND" +xref: Gmelin:14910 "Gmelin" +xref: KEGG:C00115 +xref: KEGG:C00698 +xref: PDBeChem:CL +xref: UM-BBD_compID:c0884 "UM-BBD" +is_a: CHEBI:16042 ! halide anion +is_a: CHEBI:33432 ! monoatomic chlorine +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:17883 ! hydrogen chloride + +[Term] +id: CHEBI:18012 +name: fumaric acid +namespace: chebi_ontology +alt_id: CHEBI:24124 +alt_id: CHEBI:42743 +alt_id: CHEBI:5190 +def: "A butenedioic acid in which the C=C double bond has E geometry. It is an intermediate metabolite in the citric acid cycle." [] +subset: 3_STAR +synonym: "(2E)-2-butenedioic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "(2E)-but-2-enedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "(E)-2-butenedioic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "116.011" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "116.07220" RELATED MASS [ChEBI] +synonym: "C4H4O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "E297" RELATED [ChEBI] +synonym: "FUMARIC ACID" EXACT [PDBeChem] +synonym: "Fumaric acid" EXACT [KEGG_COMPOUND] +synonym: "Fumarsaeure" RELATED [ChEBI] +synonym: "InChI=1S/C4H4O4/c5-3(6)1-2-4(7)8/h1-2H,(H,5,6)(H,7,8)/b2-1+" RELATED InChI [ChEBI] +synonym: "OC(=O)\\C=C\\C(O)=O" RELATED SMILES [ChEBI] +synonym: "trans-1,2-ethylenedicarboxylic acid" RELATED [ChemIDplus] +synonym: "trans-but-2-enedioic acid" RELATED [IUPAC] +synonym: "trans-Butenedioic acid" RELATED [KEGG_COMPOUND] +synonym: "VZCYOOQTPOCHFL-OWOJBTEDSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:605763 "Beilstein" +xref: CAS:110-17-8 "KEGG COMPOUND" +xref: Drug_Central:3229 "DrugCentral" +xref: Gmelin:49855 "Gmelin" +xref: HMDB:HMDB00134 +xref: KEGG:C00122 +xref: KEGG:D02308 +xref: KNApSAcK:C00001183 +xref: MetaCyc:FUM +xref: PDBeChem:FUM +xref: PMID:17439666 "Europe PMC" +xref: PMID:21414846 "Europe PMC" +xref: PMID:22113915 "Europe PMC" +xref: PMID:22217732 "Europe PMC" +xref: PMID:22516248 "Europe PMC" +xref: Reaxys:605763 "Reaxys" +xref: Wikipedia:Fumaric_Acid +is_a: CHEBI:22958 ! butenedioic acid +relationship: has_role CHEBI:64049 ! food acidity regulator +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:37154 ! fumarate(1-) + +[Term] +id: CHEBI:18026 +name: 2,3-dihydroxybenzoic acid +namespace: chebi_ontology +alt_id: CHEBI:19320 +alt_id: CHEBI:41901 +alt_id: CHEBI:885 +def: "A dihydroxybenzoic acid that is benzoic acid substituted by hydroxy groups at positions 2 and 3. It occurs naturally in Phyllanthus acidus and in the aquatic fern Salvinia molesta." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "154.027" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "154.12010" RELATED MASS [ChEBI] +synonym: "2,3 DHB" RELATED [NIST_Chemistry_WebBook] +synonym: "2,3-DIHYDROXY-BENZOIC ACID" RELATED [PDBeChem] +synonym: "2,3-Dihydroxybenzoic acid" EXACT [KEGG_COMPOUND] +synonym: "2,3-dihydroxybenzoic acid" EXACT [ChEBI] +synonym: "2,3-dihydroxybenzoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "2-pyrocatechuic acid" RELATED [ChemIDplus] +synonym: "3-hydroxysalicylic acid" RELATED [ChemIDplus] +synonym: "C7H6O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "catechol-3-carboxylic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "DOBK" RELATED [NIST_Chemistry_WebBook] +synonym: "GLDQAMYCGOIJDV-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C7H6O4/c8-5-3-1-2-4(6(5)9)7(10)11/h1-3,8-9H,(H,10,11)" RELATED InChI [ChEBI] +synonym: "o-pyrocatechuic acid" RELATED [ChemIDplus] +synonym: "OC(=O)c1cccc(O)c1O" RELATED SMILES [ChEBI] +synonym: "pyrocatechuic acid" RELATED [ChemIDplus] +xref: Beilstein:2209117 "Beilstein" +xref: CAS:303-38-8 "NIST Chemistry WebBook" +xref: DrugBank:DB01672 +xref: HMDB:HMDB00397 +xref: KEGG:C00196 +xref: KNApSAcK:C00002669 +xref: PDBeChem:DBH +xref: PMID:17065237 "Europe PMC" +xref: PMID:24171385 "Europe PMC" +xref: PMID:3575393 "Europe PMC" +xref: Reaxys:2209117 "Reaxys" +xref: Wikipedia:2\,3-Dihydroxybenzoic_acid +is_a: CHEBI:23778 ! dihydroxybenzoic acid +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76967 ! human xenobiotic metabolite +relationship: is_conjugate_acid_of CHEBI:36654 ! 2,3-dihydroxybenzoate + +[Term] +id: CHEBI:18050 +name: L-glutamine +namespace: chebi_ontology +alt_id: CHEBI:13110 +alt_id: CHEBI:21308 +alt_id: CHEBI:42812 +alt_id: CHEBI:42814 +alt_id: CHEBI:42899 +alt_id: CHEBI:42943 +alt_id: CHEBI:6227 +def: "An optically active form of glutamine having L-configuration." [] +subset: 3_STAR +synonym: "(2S)-2,5-diamino-5-oxopentanoic acid" RELATED [IUPAC] +synonym: "(2S)-2-amino-4-carbamoylbutanoic acid" RELATED [JCBN] +synonym: "(S)-2,5-diamino-5-oxopentanoic acid" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "146.069" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "146.14458" RELATED MASS [ChEBI] +synonym: "C5H10N2O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Glutamic acid 5-amide" RELATED [HMDB] +synonym: "Glutamic acid amide" RELATED [HMDB] +synonym: "GLUTAMINE" RELATED [PDBeChem] +synonym: "InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/t3-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-(+)-glutamine" RELATED [ChemIDplus] +synonym: "L-2-Aminoglutaramic acid" RELATED [KEGG_COMPOUND] +synonym: "L-2-aminoglutaramic acid" RELATED [DrugBank] +synonym: "L-2-aminoglutaramic acid" RELATED [ChEBI] +synonym: "L-glutamic acid gamma-amide" RELATED [NIST_Chemistry_WebBook] +synonym: "L-Glutamin" RELATED [ChEBI] +synonym: "L-Glutamine" EXACT [KEGG_COMPOUND] +synonym: "L-glutamine" EXACT IUPAC_NAME [IUPAC] +synonym: "L-Glutaminsaeure-5-amid" RELATED [ChEBI] +synonym: "Levoglutamide" RELATED [KEGG_DRUG] +synonym: "N[C@@H](CCC(N)=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "Q" RELATED [ChEBI] +synonym: "ZDXPYRJPNDTMRX-VKHMYHEASA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1723797 "ChemIDplus" +xref: CAS:56-85-9 "ChemIDplus" +xref: Drug_Central:1311 "DrugCentral" +xref: DrugBank:DB00130 +xref: ECMDB:ECMDB00641 +xref: Gmelin:3509 "Gmelin" +xref: HMDB:HMDB00641 +xref: KEGG:C00064 +xref: KEGG:D00015 +xref: KNApSAcK:C00001359 +xref: LINCS:LSM-4741 +xref: MetaCyc:GLN +xref: PDBeChem:GLN +xref: PMID:11139387 "Europe PMC" +xref: PMID:15204730 "Europe PMC" +xref: PMID:22055478 "Europe PMC" +xref: PMID:22206385 "Europe PMC" +xref: PMID:22451274 "Europe PMC" +xref: PMID:22453904 "Europe PMC" +xref: PMID:22575040 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: Reaxys:1723797 "Reaxys" +xref: Wikipedia:Glutamine +xref: YMDB:YMDB00002 +is_a: CHEBI:24318 ! glutamine family amino acid +is_a: CHEBI:28300 ! glutamine +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: has_role CHEBI:61908 ! EC 1.14.13.39 (nitric oxide synthase) inhibitor +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:32665 ! L-glutaminate +relationship: is_conjugate_base_of CHEBI:32666 ! L-glutaminium +relationship: is_enantiomer_of CHEBI:17061 ! D-glutamine +relationship: is_tautomer_of CHEBI:58359 ! L-glutamine zwitterion + +[Term] +id: CHEBI:18059 +name: lipid +namespace: chebi_ontology +alt_id: CHEBI:14517 +alt_id: CHEBI:25054 +alt_id: CHEBI:6486 +def: "'Lipids' is a loosely defined term for substances of biological origin that are soluble in nonpolar solvents. They consist of saponifiable lipids, such as glycerides (fats and oils) and phospholipids, as well as nonsaponifiable lipids, principally steroids." [] +subset: 3_STAR +synonym: "Lipid" EXACT [KEGG_COMPOUND] +synonym: "lipids" EXACT IUPAC_NAME [IUPAC] +xref: KEGG:C01356 +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:18107 +name: xanthosine +namespace: chebi_ontology +alt_id: CHEBI:10066 +alt_id: CHEBI:15323 +alt_id: CHEBI:27327 +def: "A purine nucleoside in which xanthine is attached to ribofuranose via a beta-N(9)-glycosidic bond." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "284.076" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "284.22564" RELATED MASS [ChEBI] +synonym: "9-beta-D-ribofuranosyl-3,9-dihydro-1H-purine-2,6-dione" RELATED [ChEBI] +synonym: "9-beta-D-Ribofuranosylxanthine" RELATED [ChemIDplus] +synonym: "9-beta-D-ribofuranosylxanthine" RELATED [ChEBI] +synonym: "C10H12N4O6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C10H12N4O6/c15-1-3-5(16)6(17)9(20-3)14-2-11-4-7(14)12-10(19)13-8(4)18/h2-3,5-6,9,15-17H,1H2,(H2,12,13,18,19)/t3-,5-,6-,9-/m1/s1" RELATED InChI [ChEBI] +synonym: "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c1[nH]c(=O)[nH]c2=O" RELATED SMILES [ChEBI] +synonym: "UBORTCNDUKBEOP-UUOKFMHZSA-N" RELATED InChIKey [ChEBI] +synonym: "xanthine 9-beta-D-ribofuranoside" RELATED [ChEBI] +synonym: "Xanthine riboside" RELATED [ChemIDplus] +synonym: "Xanthosine" EXACT [KEGG_COMPOUND] +synonym: "xanthosine" EXACT [UniProt] +synonym: "xanthosine" EXACT IUPAC_NAME [IUPAC] +xref: CAS:146-80-5 "KEGG COMPOUND" +xref: HMDB:HMDB00299 +xref: KEGG:C01762 +xref: KNApSAcK:C00007222 +xref: MetaCyc:XANTHOSINE +xref: PMID:10879466 "Europe PMC" +xref: PMID:19176874 "Europe PMC" +xref: PMID:21071429 "Europe PMC" +xref: PMID:22698263 "Europe PMC" +xref: PMID:22731949 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:22932763 "Europe PMC" +xref: Reaxys:625906 "Reaxys" +xref: Wikipedia:Xanthosine +is_a: CHEBI:48136 ! xanthosines +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:18133 +name: hexose +namespace: chebi_ontology +alt_id: CHEBI:14399 +alt_id: CHEBI:24590 +alt_id: CHEBI:5709 +def: "Any six-carbon monosaccharide which in its linear form contains either an aldehyde group at position 1 (aldohexose) or a ketone group at position 2 (ketohexose)." [] +subset: 3_STAR +synonym: "Hexose" EXACT [KEGG_COMPOUND] +synonym: "hexose" EXACT [UniProt] +synonym: "hexoses" RELATED [ChEBI] +xref: KEGG:C00738 +is_a: CHEBI:35381 ! monosaccharide +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:18139 +name: trimethylamine +namespace: chebi_ontology +alt_id: CHEBI:15261 +alt_id: CHEBI:27125 +alt_id: CHEBI:27127 +alt_id: CHEBI:9732 +def: "A tertiary amine that is ammonia in which each hydrogen atom is substituted by an methyl group." [] +subset: 3_STAR +synonym: "(CH3)3N" RELATED [KEGG_COMPOUND] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "59.073" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "59.11030" RELATED MASS [ChEBI] +synonym: "C3H9N" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CN(C)C" RELATED SMILES [ChEBI] +synonym: "GETQZCLCWQTVFV-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C3H9N/c1-4(2)3/h1-3H3" RELATED InChI [ChEBI] +synonym: "N(CH3)3" RELATED [ChEBI] +synonym: "N,N,N-trimethylamine" RELATED [ChEBI] +synonym: "N,N-Dimethylmethanamine" RELATED [KEGG_COMPOUND] +synonym: "N,N-dimethylmethanamine" EXACT IUPAC_NAME [IUPAC] +synonym: "NMe3" RELATED [ChEBI] +synonym: "TMA" RELATED [NIST_Chemistry_WebBook] +synonym: "tridimethylaminomethane" RELATED [ChEBI] +synonym: "Trimethylamin" RELATED [ChEBI] +synonym: "Trimethylamine" EXACT [KEGG_COMPOUND] +xref: Beilstein:956566 "Beilstein" +xref: CAS:75-50-3 "KEGG COMPOUND" +xref: Gmelin:1309 "Gmelin" +xref: HMDB:HMDB00906 +xref: KEGG:C00565 +xref: KNApSAcK:C00001433 +xref: MetaCyc:TRIMETHYLAMINE +xref: PDBeChem:KEN +xref: PMID:14047118 "Europe PMC" +xref: PMID:15304308 "Europe PMC" +xref: PMID:15752091 "Europe PMC" +xref: PMID:17190852 "Europe PMC" +xref: PMID:1801314 "Europe PMC" +xref: PMID:24591617 "Europe PMC" +xref: PMID:2501587 "Europe PMC" +xref: PMID:5161463 "Europe PMC" +xref: Reaxys:956566 "Reaxys" +xref: Wikipedia:Trimethylamine +is_a: CHEBI:25274 ! methylamines +is_a: CHEBI:32876 ! tertiary amine +relationship: has_role CHEBI:76967 ! human xenobiotic metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_base_of CHEBI:58389 ! trimethylammonium + +[Term] +id: CHEBI:18140 +name: hydrogen halide +namespace: chebi_ontology +alt_id: CHEBI:13368 +alt_id: CHEBI:37140 +alt_id: CHEBI:5599 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "[F,Cl,Br,I]" RELATED SMILES [ChEBI] +synonym: "HX" RELATED [UniProt] +synonym: "HX" RELATED FORMULA [ChEBI] +synonym: "hydrogen halide" EXACT [IUPAC] +synonym: "hydrogen halides" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogen halides" RELATED [ChEBI] +is_a: CHEBI:33405 ! hydracid +relationship: has_role CHEBI:75771 ! mouse metabolite + +[Term] +id: CHEBI:18152 +name: myricetin +namespace: chebi_ontology +alt_id: CHEBI:14636 +alt_id: CHEBI:44341 +alt_id: CHEBI:7053 +def: "A hexahydroxyflavone that is flavone substituted by hydroxy groups at positions 3, 3', 4', 5, 5' and 7. It has been isolated from the leaves of Myrica rubra and other plants." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3,3',4',5,5',7-Hexahydroxyflavone" RELATED [ChemIDplus] +synonym: "3,5,7,3',4',5'-Hexahydroxyflavone" RELATED [KEGG_COMPOUND] +synonym: "3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)-4H-chromen-4-one" EXACT IUPAC_NAME [IUPAC] +synonym: "318.038" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "318.23510" RELATED MASS [ChEBI] +synonym: "C15H10O8" RELATED FORMULA [ChEBI] +synonym: "Cannabiscetin" RELATED [ChemIDplus] +synonym: "IKMDFBPHZNJCSN-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C15H10O8/c16-6-3-7(17)11-10(4-6)23-15(14(22)13(11)21)5-1-8(18)12(20)9(19)2-5/h1-4,16-20,22H" RELATED InChI [ChEBI] +synonym: "Myricetin" EXACT [KEGG_COMPOUND] +synonym: "Myricetol" RELATED [ChemIDplus] +synonym: "Oc1cc(O)c2c(c1)oc(-c1cc(O)c(O)c(O)c1)c(O)c2=O" RELATED SMILES [ChEBI] +xref: Beilstein:332331 "Beilstein" +xref: CAS:529-44-2 "ChemIDplus" +xref: DrugBank:DB02375 +xref: HMDB:HMDB02755 +xref: KEGG:C10107 +xref: KNApSAcK:C00001071 +xref: LINCS:LSM-2957 +xref: LIPID_MAPS_instance:LMPK12110001 "LIPID MAPS" +xref: MetaCyc:MYRICETIN +xref: PDBeChem:MYC +xref: PMID:19407970 "Europe PMC" +xref: PMID:19778600 "Europe PMC" +xref: PMID:22482362 "Europe PMC" +xref: PMID:23099505 "Europe PMC" +xref: PMID:23232835 "Europe PMC" +xref: PMID:23265454 "Europe PMC" +xref: Reaxys:332331 "Reaxys" +xref: Wikipedia:Myricetin +is_a: CHEBI:24561 ! hexahydroxyflavone +is_a: CHEBI:52267 ! 7-hydroxyflavonol +relationship: has_role CHEBI:22586 ! antioxidant +relationship: has_role CHEBI:35526 ! hypoglycemic agent +relationship: has_role CHEBI:35610 ! antineoplastic agent +relationship: has_role CHEBI:50630 ! cyclooxygenase 1 inhibitor +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:78295 ! food component +relationship: is_conjugate_acid_of CHEBI:58395 ! myricetin(1-) + +[Term] +id: CHEBI:18154 +name: polysaccharide +namespace: chebi_ontology +alt_id: CHEBI:14864 +alt_id: CHEBI:26205 +alt_id: CHEBI:8322 +def: "A biomacromolecule consisting of large numbers of monosaccharide residues linked glycosidically. This term is commonly used only for those containing more than ten monosaccharide residues." [] +subset: 3_STAR +synonym: "Glycan" RELATED [KEGG_COMPOUND] +synonym: "Glycane" RELATED [ChEBI] +synonym: "glycans" RELATED [IUPAC] +synonym: "Glykan" RELATED [ChEBI] +synonym: "Glykane" RELATED [ChEBI] +synonym: "polisacarido" RELATED [ChEBI] +synonym: "polisacaridos" RELATED [IUPAC] +synonym: "Polysaccharide" EXACT [KEGG_COMPOUND] +synonym: "polysaccharide" EXACT [UniProt] +synonym: "polysaccharides" EXACT IUPAC_NAME [IUPAC] +xref: KEGG:C00420 +is_a: CHEBI:16646 ! carbohydrate +is_a: CHEBI:33694 ! biomacromolecule + +[Term] +id: CHEBI:18186 +name: tyrosine +namespace: chebi_ontology +alt_id: CHEBI:15277 +alt_id: CHEBI:27176 +alt_id: CHEBI:9800 +def: "An alpha-amino acid that is phenylalanine bearing a hydroxy substituent at position 4 on the phenyl ring." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "181.074" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "181.18858" RELATED MASS [ChEBI] +synonym: "2-amino-3-(4-hydroxyphenyl)propanoic acid" RELATED [IUPAC] +synonym: "2-Amino-3-(p-hydroxyphenyl)propionic acid" RELATED [KEGG_COMPOUND] +synonym: "3-(p-Hydroxyphenyl)alanine" RELATED [KEGG_COMPOUND] +synonym: "C9H11NO3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)" RELATED InChI [ChEBI] +synonym: "NC(Cc1ccc(O)cc1)C(O)=O" RELATED SMILES [ChEBI] +synonym: "OUYCCCASQSFEME-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "tirosina" RELATED [ChEBI] +synonym: "Tyr" RELATED [ChEBI] +synonym: "Tyrosin" RELATED [ChEBI] +synonym: "Tyrosine" EXACT [KEGG_COMPOUND] +synonym: "tyrosine" EXACT [UniProt] +synonym: "tyrosine" EXACT IUPAC_NAME [IUPAC] +synonym: "Y" RELATED [ChEBI] +xref: Beilstein:515881 "Beilstein" +xref: CAS:55520-40-6 "ChemIDplus" +xref: CAS:556-03-6 "KEGG COMPOUND" +xref: Gmelin:27744 "Gmelin" +xref: KEGG:C01536 +xref: KNApSAcK:C00001397 +xref: PMID:17190852 "Europe PMC" +xref: Reaxys:515881 "Reaxys" +is_a: CHEBI:33704 ! alpha-amino acid +is_a: CHEBI:33856 ! aromatic amino acid +relationship: has_functional_parent CHEBI:30768 ! propionic acid +relationship: has_part CHEBI:50336 ! 4-hydroxybenzyl group +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_conjugate_acid_of CHEBI:32784 ! tyrosinate(1-) +relationship: is_conjugate_base_of CHEBI:32786 ! tyrosinium + +[Term] +id: CHEBI:18208 +name: benzylpenicillin +namespace: chebi_ontology +alt_id: CHEBI:14743 +alt_id: CHEBI:25866 +alt_id: CHEBI:45073 +alt_id: CHEBI:7962 +def: "A penicillin in which the substituent at position 6 of the penam ring is a phenylacetamido group." [] +subset: 3_STAR +synonym: "(2S,5R,6R)-3,3-dimethyl-7-oxo-6-(phenylacetamido)-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2,2-dimethyl-6beta-(phenylacetamido)penam-3alpha-carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "334.099" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "334.392" RELATED MASS [ChEBI] +synonym: "6-(2-phenylacetamido)penicillanic acid" RELATED [ChemIDplus] +synonym: "bencilpenicilina" RELATED INN [ChemIDplus] +synonym: "bensylpenicillin" RELATED [ChEBI] +synonym: "benzyl benicillin" RELATED [ChEBI] +synonym: "Benzylpenicillin" EXACT [KEGG_COMPOUND] +synonym: "benzylpenicillin" RELATED INN [KEGG_DRUG] +synonym: "benzylpenicilline" RELATED INN [ChemIDplus] +synonym: "benzylpenicillinic acid" RELATED [ChemIDplus] +synonym: "benzylpenicillinum" RELATED INN [ChemIDplus] +synonym: "C16H18N2O4S" RELATED FORMULA [ChEBI] +synonym: "free penicillin II" RELATED [ChemIDplus] +synonym: "InChI=1S/C16H18N2O4S/c1-16(2)12(15(21)22)18-13(20)11(14(18)23-16)17-10(19)8-9-6-4-3-5-7-9/h3-7,11-12,14H,8H2,1-2H3,(H,17,19)(H,21,22)/t11-,12+,14-/m1/s1" RELATED InChI [ChEBI] +synonym: "JGSARLDLIJGVTE-MBNYWOFBSA-N" RELATED InChIKey [ChEBI] +synonym: "N12C([C@H]([C@]1(SC([C@@H]2C(O)=O)(C)C)[H])NC(CC3=CC=CC=C3)=O)=O" RELATED SMILES [ChEBI] +synonym: "PCG" RELATED [ChEBI] +synonym: "PENICILLIN G" RELATED [PDBeChem] +synonym: "Penicillin G" RELATED [KEGG_COMPOUND] +synonym: "PG" RELATED [ChEBI] +xref: Beilstein:44740 "Beilstein" +xref: CAS:61-33-6 "KEGG COMPOUND" +xref: Drug_Central:2082 "DrugCentral" +xref: DrugBank:DB01053 +xref: Gmelin:781913 "Gmelin" +xref: HMDB:HMDB15186 +xref: KEGG:C05551 +xref: KEGG:D02336 +xref: LINCS:LSM-3229 +xref: Patent:US3024169 +xref: PDBeChem:PNN +xref: PMID:10930630 "Europe PMC" +xref: PMID:11431418 "Europe PMC" +xref: PMID:11906332 "Europe PMC" +xref: PMID:12569987 "Europe PMC" +xref: PMID:12850488 "Europe PMC" +xref: PMID:1384868 "Europe PMC" +xref: PMID:16033609 "Europe PMC" +xref: PMID:1709917 "Europe PMC" +xref: PMID:2083978 "Europe PMC" +xref: PMID:24485692 "Europe PMC" +xref: PMID:24631718 "Europe PMC" +xref: PMID:25998949 "Europe PMC" +xref: PMID:27731424 "Europe PMC" +xref: PMID:6161899 "Europe PMC" +xref: PMID:7602118 "Europe PMC" +xref: PMID:7716788 "Europe PMC" +xref: Reaxys:44740 "Reaxys" +xref: Wikipedia:Benzylpenicillin +is_a: CHEBI:88187 ! penicillin allergen +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: has_role CHEBI:53000 ! epitope +relationship: is_conjugate_acid_of CHEBI:51354 ! benzylpenicillin(1-) + +[Term] +id: CHEBI:18212 +name: selenite(2-) +namespace: chebi_ontology +alt_id: CHEBI:15077 +alt_id: CHEBI:9090 +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "126.95820" RELATED MASS [ChEBI] +synonym: "127.901" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "[O-][Se]([O-])=O" RELATED SMILES [ChEBI] +synonym: "[SeO3](2-)" RELATED [IUPAC] +synonym: "InChI=1S/H2O3Se/c1-4(2)3/h(H2,1,2,3)/p-2" RELATED InChI [ChEBI] +synonym: "MCAHWIHFGHIESP-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "O3Se" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Selenit" RELATED [ChEBI] +synonym: "Selenite" RELATED [KEGG_COMPOUND] +synonym: "selenite" EXACT IUPAC_NAME [IUPAC] +synonym: "selenite" RELATED [UniProt] +synonym: "trioxidoselenate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxoselenate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxoselenate(IV)" EXACT IUPAC_NAME [IUPAC] +xref: CAS:14124-67-5 "ChemIDplus" +xref: Gmelin:100833 "Gmelin" +xref: KEGG:C05684 +xref: UM-BBD_compID:c0741 "UM-BBD" +is_a: CHEBI:33488 ! selenium oxoanion +relationship: is_conjugate_base_of CHEBI:29924 ! hydrogenselenite + +[Term] +id: CHEBI:18222 +name: xylose +namespace: chebi_ontology +alt_id: CHEBI:10085 +alt_id: CHEBI:15332 +alt_id: CHEBI:27348 +alt_id: CHEBI:33944 +alt_id: CHEBI:46500 +def: "An aldopentose, found in the embryos of most edible plants and used in medicine to test for malabsorption by administration in water to the patient." [] +subset: 3_STAR +synonym: "C5H10O5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "DL-xylose" RELATED [ChEBI] +synonym: "Xyl" RELATED [JCBN] +synonym: "xylo-pentose" EXACT IUPAC_NAME [IUPAC] +synonym: "Xylose" EXACT [KEGG_COMPOUND] +synonym: "xylose" EXACT [UniProt] +synonym: "xylose" EXACT IUPAC_NAME [IUPAC] +xref: colombos:XYLOSE +xref: KEGG:C01394 +xref: Wikipedia:Xylose +is_a: CHEBI:33916 ! aldopentose +relationship: has_role CHEBI:76924 ! plant metabolite + +[Term] +id: CHEBI:18232 +name: D-galactosamine 6-phosphate +namespace: chebi_ontology +alt_id: CHEBI:12934 +alt_id: CHEBI:20953 +alt_id: CHEBI:4137 +def: "A galactosamine phosphate that is D-galactosamine substituted at position 1 by a monophosphate group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-amino-2-deoxy-6-O-phosphono-D-galactopyranose" EXACT IUPAC_NAME [IUPAC] +synonym: "2-amino-2-deoxy-D-galactopyranose 6-(dihydrogen phosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "259.046" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "259.15106" RELATED MASS [ChEBI] +synonym: "C6H14NO8P" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-Galactosamine 6-phosphate" EXACT [KEGG_COMPOUND] +synonym: "InChI=1S/C6H14NO8P/c7-3-5(9)4(8)2(15-6(3)10)1-14-16(11,12)13/h2-6,8-10H,1,7H2,(H2,11,12,13)/t2-,3-,4+,5-,6?/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H]1C(O)O[C@H](COP(O)(O)=O)[C@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "XHMJOUIAFHJHBW-GASJEMHNSA-N" RELATED InChIKey [ChEBI] +xref: KEGG:C06377 +xref: MetaCyc:D-GALACTOSAMINE-6-PHOSPHATE +xref: PMID:15133084 "Europe PMC" +xref: PMID:16630633 "Europe PMC" +xref: PMID:3102459 "Europe PMC" +xref: PMID:8054717 "Europe PMC" +xref: Reaxys:4143677 "Reaxys" +is_a: CHEBI:24154 ! galactosamine phosphate +relationship: has_functional_parent CHEBI:28328 ! D-galactosamine +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:71674 ! D-galactosamine 6-phosphate(1-) + +[Term] +id: CHEBI:18248 +name: iron atom +namespace: chebi_ontology +alt_id: CHEBI:13322 +alt_id: CHEBI:24872 +alt_id: CHEBI:5974 +def: "An iron group element atom that has atomic number 26." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "26Fe" RELATED [IUPAC] +synonym: "55.84500" RELATED MASS [ChEBI] +synonym: "55.935" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "[Fe]" RELATED SMILES [ChEBI] +synonym: "Eisen" RELATED [ChEBI] +synonym: "Fe" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Fe" RELATED [IUPAC] +synonym: "fer" RELATED [ChEBI] +synonym: "ferrum" RELATED [IUPAC] +synonym: "hierro" RELATED [ChEBI] +synonym: "InChI=1S/Fe" RELATED InChI [ChEBI] +synonym: "Iron" RELATED [KEGG_COMPOUND] +synonym: "iron" EXACT IUPAC_NAME [IUPAC] +synonym: "iron" RELATED [ChEBI] +synonym: "XEEYBQQBJWHFJM-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7439-89-6 "KEGG COMPOUND" +xref: DrugBank:DB01592 +xref: HMDB:HMDB15531 +xref: KEGG:C00023 +xref: Reaxys:4122945 "Reaxys" +xref: WebElements:Fe +is_a: CHEBI:33356 ! iron group element atom +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite + +[Term] +id: CHEBI:18254 +name: ribonucleoside +namespace: chebi_ontology +alt_id: CHEBI:13014 +alt_id: CHEBI:13015 +alt_id: CHEBI:13685 +alt_id: CHEBI:21085 +alt_id: CHEBI:26560 +alt_id: CHEBI:4240 +alt_id: CHEBI:8844 +def: "Any nucleoside where the sugar component is D-ribose." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "133.050" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "a ribonucleoside" RELATED [UniProt] +synonym: "C5H9O4R" RELATED FORMULA [ChEBI] +synonym: "OC[C@H]1O[C@@H]([*])[C@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "Ribonucleoside" EXACT [KEGG_COMPOUND] +synonym: "ribonucleosides" RELATED [ChEBI] +xref: KEGG:C00911 +is_a: CHEBI:33838 ! nucleoside +is_a: CHEBI:47019 ! dihydroxytetrahydrofuran + +[Term] +id: CHEBI:18274 +name: 2'-deoxyribonucleoside +namespace: chebi_ontology +alt_id: CHEBI:1083 +alt_id: CHEBI:11394 +alt_id: CHEBI:11567 +alt_id: CHEBI:11568 +alt_id: CHEBI:19259 +alt_id: CHEBI:19560 +alt_id: CHEBI:4421 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "117.055" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "2'-Deoxynucleoside" RELATED [KEGG_COMPOUND] +synonym: "2'-deoxyribonucleosides" RELATED [ChEBI] +synonym: "2-Deoxy-D-ribosyl-base" RELATED [KEGG_COMPOUND] +synonym: "a 2'-deoxyribonucleoside" RELATED [UniProt] +synonym: "C5H9O3R" RELATED FORMULA [ChEBI] +synonym: "Deoxynucleoside" RELATED [KEGG_COMPOUND] +synonym: "OC[C@H]1O[C@@H]([*])C[C@@H]1O" RELATED SMILES [ChEBI] +xref: KEGG:C02269 +xref: KEGG:C03216 +is_a: CHEBI:23636 ! deoxyribonucleoside +is_a: CHEBI:47018 ! monohydroxytetrahydrofuran + +[Term] +id: CHEBI:18282 +name: nucleobase +namespace: chebi_ontology +alt_id: CHEBI:13873 +alt_id: CHEBI:25598 +alt_id: CHEBI:2995 +def: "That part of DNA or RNA that may be involved in pairing." [] +subset: 3_STAR +synonym: "a nucleobase" RELATED [UniProt] +synonym: "Base" RELATED [KEGG_COMPOUND] +synonym: "nucleobases" RELATED [ChEBI] +xref: KEGG:C00701 +xref: Wikipedia:Nucleobase +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + +[Term] +id: CHEBI:18283 +name: alpha,alpha-trehalose 6-phosphate +namespace: chebi_ontology +alt_id: CHEBI:10201 +alt_id: CHEBI:12285 +alt_id: CHEBI:15252 +alt_id: CHEBI:22364 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "422.083" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "422.27638" RELATED MASS [ChEBI] +synonym: "alpha,alpha'-Trehalose 6-phosphate" RELATED [KEGG_COMPOUND] +synonym: "alpha-D-glucopyranosyl 6-O-phosphono-alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "alpha-D-glucopyranosyl alpha-D-glucopyranoside 6-(dihydrogen phosphate)" RELATED [ChemIDplus] +synonym: "C12H23O14P" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C12H23O14P/c13-1-3-5(14)7(16)9(18)11(24-3)26-12-10(19)8(17)6(15)4(25-12)2-23-27(20,21)22/h3-19H,1-2H2,(H2,20,21,22)/t3-,4-,5-,6-,7+,8+,9-,10-,11-,12-/m1/s1" RELATED InChI [ChEBI] +synonym: "LABSPYBHMPDTEL-LIZSDCNHSA-N" RELATED InChIKey [ChEBI] +synonym: "OC[C@H]1O[C@H](O[C@H]2O[C@H](COP(O)(O)=O)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "Trehalose 6-phosphate" RELATED [KEGG_COMPOUND] +xref: Beilstein:59815 "Beilstein" +xref: CAS:4484-88-2 "ChemIDplus" +xref: DrugBank:DB02430 +xref: KEGG:C00689 +xref: KEGG:G09795 +xref: KNApSAcK:C00007451 +is_a: CHEBI:27084 ! trehalose phosphate +relationship: has_functional_parent CHEBI:16551 ! alpha,alpha-trehalose +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:58429 ! alpha,alpha-trehalose 6-phosphate(2-) + +[Term] +id: CHEBI:18287 +name: L-fucose +namespace: chebi_ontology +alt_id: CHEBI:13102 +alt_id: CHEBI:21293 +def: "Any form of fucose having L configuration." [] +subset: 3_STAR +synonym: "(-)-fucose" RELATED [ChemIDplus] +synonym: "(-)-L-fucose" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "164.15648" RELATED MASS [ChEBI] +synonym: "6-deoxy-L-galactose" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H12O5" RELATED FORMULA [ChEBI] +synonym: "L-(-)-fucose" RELATED [ChemIDplus] +synonym: "L-Fuc" RELATED [JCBN] +synonym: "L-fucose" EXACT IUPAC_NAME [IUPAC] +synonym: "L-galactomethylose" RELATED [ChemIDplus] +xref: CAS:2438-80-4 "ChemIDplus" +xref: PMID:20877283 "Europe PMC" +is_a: CHEBI:33984 ! fucose +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:18291 +name: manganese atom +namespace: chebi_ontology +alt_id: CHEBI:13382 +alt_id: CHEBI:25153 +alt_id: CHEBI:6681 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "25Mn" RELATED [IUPAC] +synonym: "54.938" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "54.93805" RELATED MASS [ChEBI] +synonym: "[Mn]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/Mn" RELATED InChI [ChEBI] +synonym: "Mangan" RELATED [NIST_Chemistry_WebBook] +synonym: "Manganese" RELATED [KEGG_COMPOUND] +synonym: "manganese" EXACT IUPAC_NAME [IUPAC] +synonym: "manganese" RELATED [ChEBI] +synonym: "manganeso" RELATED [ChEBI] +synonym: "manganum" RELATED [ChEBI] +synonym: "Mn" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Mn" RELATED [IUPAC] +synonym: "PWHULOQIROXLJO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7439-96-5 "ChemIDplus" +xref: KEGG:C00034 +xref: WebElements:Mn +is_a: CHEBI:33352 ! manganese group element atom +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite + +[Term] +id: CHEBI:18295 +name: histamine +namespace: chebi_ontology +alt_id: CHEBI:14401 +alt_id: CHEBI:24596 +alt_id: CHEBI:43187 +alt_id: CHEBI:817 +def: "A member of the class of imidazoles that is 1H-imidazole substituted at position C-4 by a 2-aminoethyl group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "111.080" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "111.14518" RELATED MASS [ChEBI] +synonym: "1H-Imidazole-4-ethanamine" RELATED [KEGG_COMPOUND] +synonym: "2-(1H-imidazol-4-yl)ethanamine" EXACT IUPAC_NAME [IUPAC] +synonym: "2-(4-Imidazolyl)ethylamine" RELATED [KEGG_COMPOUND] +synonym: "C5H9N3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "HISTAMINE" EXACT [PDBeChem] +synonym: "Histamine" EXACT [KEGG_COMPOUND] +synonym: "InChI=1S/C5H9N3/c6-2-1-5-3-7-4-8-5/h3-4H,1-2,6H2,(H,7,8)" RELATED InChI [ChEBI] +synonym: "NCCc1c[nH]cn1" RELATED SMILES [ChEBI] +synonym: "NTYJJOPFIAHURM-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:2012 "Beilstein" +xref: CAS:51-45-6 "ChemIDplus" +xref: Drug_Central:1375 "DrugCentral" +xref: Gmelin:2968 "Gmelin" +xref: HMDB:HMDB00870 +xref: KEGG:C00388 +xref: KEGG:D08040 +xref: KNApSAcK:C00001414 +xref: MetaCyc:HISTAMINE +xref: PDBeChem:HSM +xref: PMID:16399866 "Europe PMC" +xref: PMID:19547708 "Europe PMC" +xref: PMID:19843401 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:24101735 "Europe PMC" +xref: Reaxys:2012 "Reaxys" +xref: Wikipedia:Histamine +is_a: CHEBI:24780 ! imidazoles +is_a: CHEBI:64365 ! aralkylamino compound +relationship: has_role CHEBI:25512 ! neurotransmitter +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:58432 ! histaminium + +[Term] +id: CHEBI:18300 +name: maleic acid +namespace: chebi_ontology +alt_id: CHEBI:25119 +alt_id: CHEBI:43836 +alt_id: CHEBI:6653 +def: "A butenedioic acid in which the double bond has cis- (Z)-configuration." [] +subset: 3_STAR +synonym: "(2Z)-but-2-enedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "(Z)-2-butenedioic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "(Z)-butenedioic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "116.011" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "116.07216" RELATED MASS [ChEBI] +synonym: "C4H4O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "cis-1,2-ethylenedicarboxylic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "cis-but-2-enedioic acid" RELATED [IUPAC] +synonym: "cis-Butenedioic acid" RELATED [KEGG_COMPOUND] +synonym: "H2male" RELATED [IUPAC] +synonym: "InChI=1S/C4H4O4/c5-3(6)1-2-4(7)8/h1-2H,(H,5,6)(H,7,8)/b2-1-" RELATED InChI [ChEBI] +synonym: "MALEIC ACID" EXACT [PDBeChem] +synonym: "Maleic acid" EXACT [KEGG_COMPOUND] +synonym: "OC(=O)\\C=C/C(O)=O" RELATED SMILES [ChEBI] +synonym: "toxilic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "VZCYOOQTPOCHFL-UPHRSURJSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1903639 "Beilstein" +xref: Beilstein:605762 "Beilstein" +xref: CAS:110-16-7 "ChemIDplus" +xref: DrugBank:DB04299 +xref: Gmelin:49854 "Gmelin" +xref: HMDB:HMDB00176 +xref: KEGG:C01384 +xref: KNApSAcK:C00007417 +xref: MetaCyc:MALEATE +xref: PDBeChem:MAE +xref: PMID:10952545 "Europe PMC" +xref: PMID:11386868 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:9591280 "Europe PMC" +xref: Reaxys:605762 "Reaxys" +xref: Wikipedia:Maleic_acid +is_a: CHEBI:22958 ! butenedioic acid +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_acid_of CHEBI:37156 ! maleate(1-) + +[Term] +id: CHEBI:18308 +name: acrylic acid +namespace: chebi_ontology +alt_id: CHEBI:19766 +alt_id: CHEBI:19768 +alt_id: CHEBI:35853 +alt_id: CHEBI:40714 +alt_id: CHEBI:8487 +def: "A alpha,beta-unsaturated monocarboxylic acid that is ethene substituted by a carboxy group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-Propenoic acid" RELATED [KEGG_COMPOUND] +synonym: "72.021" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "72.06266" RELATED MASS [ChEBI] +synonym: "acroleic acid" RELATED [ChemIDplus] +synonym: "Acrylate" RELATED [KEGG_COMPOUND] +synonym: "ACRYLIC ACID" EXACT [PDBeChem] +synonym: "Acrylic acid" EXACT [KEGG_COMPOUND] +synonym: "C3H4O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "ethylenecarboxylic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/C3H4O2/c1-2-3(4)5/h2H,1H2,(H,4,5)" RELATED InChI [ChEBI] +synonym: "NIXOWILDQLNWCW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "OC(=O)C=C" RELATED SMILES [ChEBI] +synonym: "prop-2-enoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "Propenoate" RELATED [KEGG_COMPOUND] +synonym: "Propenoic acid" RELATED [ChemIDplus] +synonym: "Vinylformic acid" RELATED [KEGG_COMPOUND] +xref: Beilstein:635743 "Beilstein" +xref: CAS:79-10-7 "KEGG COMPOUND" +xref: DrugBank:DB02579 +xref: Gmelin:1817 "Gmelin" +xref: HMDB:HMDB31647 +xref: KEGG:C00511 +xref: LIPID_MAPS_instance:LMFA01030193 "LIPID MAPS" +xref: MetaCyc:MY148411 +xref: MetaCyc:MY149879 +xref: PDBeChem:AKR +xref: PMID:24650085 "Europe PMC" +xref: PMID:24673501 "Europe PMC" +xref: Reaxys:635743 "Reaxys" +xref: Wikipedia:Acrylic_acid +is_a: CHEBI:79020 ! alpha,beta-unsaturated monocarboxylic acid +relationship: has_role CHEBI:25212 ! metabolite +relationship: is_conjugate_acid_of CHEBI:37080 ! acrylate + +[Term] +id: CHEBI:18310 +name: alkane +namespace: chebi_ontology +alt_id: CHEBI:13435 +alt_id: CHEBI:22317 +alt_id: CHEBI:2576 +def: "An acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2, and therefore consisting entirely of hydrogen atoms and saturated carbon atoms." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "15.023" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "alcane" RELATED [IUPAC] +synonym: "alcanes" RELATED [IUPAC] +synonym: "alcano" RELATED [IUPAC] +synonym: "alcanos" RELATED [IUPAC] +synonym: "Alkan" RELATED [ChEBI] +synonym: "Alkane" EXACT [KEGG_COMPOUND] +synonym: "alkane" EXACT IUPAC_NAME [IUPAC] +synonym: "alkanes" EXACT IUPAC_NAME [IUPAC] +synonym: "an alkane" RELATED [UniProt] +synonym: "C[*]" RELATED SMILES [ChEBI] +synonym: "CH3R" RELATED FORMULA [ChEBI] +synonym: "RH" RELATED [KEGG_COMPOUND] +xref: KEGG:C01371 +is_a: CHEBI:24632 ! hydrocarbon +is_a: CHEBI:33653 ! aliphatic compound + +[Term] +id: CHEBI:18367 +name: phosphate(3-) +namespace: chebi_ontology +alt_id: CHEBI:14791 +alt_id: CHEBI:45024 +alt_id: CHEBI:7793 +def: "A phosphate ion that is the conjugate base of hydrogenphosphate." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "94.953" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "94.97136" RELATED MASS [ChEBI] +synonym: "[O-]P([O-])([O-])=O" RELATED SMILES [ChEBI] +synonym: "[PO4](3-)" RELATED [IUPAC] +synonym: "InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3" RELATED InChI [ChEBI] +synonym: "NBIIXXVUZAFLBC-UHFFFAOYSA-K" RELATED InChIKey [ChEBI] +synonym: "O4P" RELATED FORMULA [ChEBI] +synonym: "Orthophosphate" RELATED [KEGG_COMPOUND] +synonym: "Phosphate" RELATED [KEGG_COMPOUND] +synonym: "phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "PHOSPHATE ION" RELATED [PDBeChem] +synonym: "PO4(3-)" RELATED [IUPAC] +synonym: "tetraoxidophosphate(3-)" EXACT IUPAC_NAME [IUPAC] +synonym: "tetraoxophosphate(3-)" EXACT IUPAC_NAME [IUPAC] +synonym: "tetraoxophosphate(V)" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:3903772 "Beilstein" +xref: CAS:14265-44-2 "ChemIDplus" +xref: Gmelin:1997 "Gmelin" +xref: KEGG:C00009 +xref: PDBeChem:PO4 "ChEBI" +xref: Reaxys:3903772 "Reaxys" +is_a: CHEBI:35780 ! phosphate ion +is_a: CHEBI:79387 ! trivalent inorganic anion +relationship: is_conjugate_base_of CHEBI:43474 ! hydrogenphosphate + +[Term] +id: CHEBI:18375 +name: nucleoside 3',5'-cyclic phosphate +namespace: chebi_ontology +alt_id: CHEBI:1331 +alt_id: CHEBI:14672 +alt_id: CHEBI:19833 +def: "A ribosyl or deoxyribosyl derivative of a pyrimidine or purine base in which C-3 and C-5 of the ribose ring are engaged in formation of a cyclic mono-, di-, tri- or tetra-phosphate." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "178.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "178.07980" RELATED MASS [ChEBI] +synonym: "C5H7O5PR2" RELATED FORMULA [ChEBI] +synonym: "nucleoside 3',5'-cyclic phosphates" RELATED [ChEBI] +synonym: "OP1(=O)OC[C@H]2O[C@@H]([*])[C@H]([*])[C@@H]2O1" RELATED SMILES [ChEBI] +is_a: CHEBI:23447 ! cyclic nucleotide +relationship: is_conjugate_acid_of CHEBI:58464 ! nucleoside 3',5'-cyclic phosphate anion + +[Term] +id: CHEBI:18379 +name: nitrile +namespace: chebi_ontology +alt_id: CHEBI:13212 +alt_id: CHEBI:13426 +alt_id: CHEBI:13660 +alt_id: CHEBI:25547 +alt_id: CHEBI:7584 +def: "A compound having the structure RC#N; thus a C-substituted derivative of hydrocyanic acid, HC#N. In systematic nomenclature, the suffix nitrile denotes the triply bound #N atom, not the carbon atom attached to it." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "26.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "26.01740" RELATED MASS [ChEBI] +synonym: "[*]C#N" RELATED SMILES [ChEBI] +synonym: "a nitrile" RELATED [UniProt] +synonym: "CNR" RELATED FORMULA [ChEBI] +synonym: "Nitril" RELATED [ChEBI] +synonym: "Nitrile" EXACT [KEGG_COMPOUND] +synonym: "nitrile" EXACT [IUPAC] +synonym: "nitriles" EXACT IUPAC_NAME [IUPAC] +synonym: "nitrilos" RELATED [IUPAC] +synonym: "R-CN" RELATED [KEGG_COMPOUND] +xref: KEGG:C00726 +is_a: CHEBI:23424 ! cyanides +relationship: has_part CHEBI:48819 ! cyano group + +[Term] +id: CHEBI:18385 +name: thiamine(1+) +namespace: chebi_ontology +alt_id: CHEBI:15227 +alt_id: CHEBI:26941 +alt_id: CHEBI:46393 +alt_id: CHEBI:9530 +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "265.112" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "265.35574" RELATED MASS [ChEBI] +synonym: "3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM" RELATED [PDBeChem] +synonym: "3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-hydroxyethyl)-4-methyl-1,3-thiazol-3-ium" EXACT IUPAC_NAME [IUPAC] +synonym: "Aneurin" RELATED [KEGG_COMPOUND] +synonym: "Antiberiberi factor" RELATED [KEGG_COMPOUND] +synonym: "C12H17N4OS" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cc1ncc(C[n+]2csc(CCO)c2C)c(N)n1" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C12H17N4OS/c1-8-11(3-4-17)18-7-16(8)6-10-5-14-9(2)15-12(10)13/h5,7,17H,3-4,6H2,1-2H3,(H2,13,14,15)/q+1" RELATED InChI [ChEBI] +synonym: "JZRWCGZRTZMZEH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Thiamin" RELATED [KEGG_COMPOUND] +synonym: "Thiamine" RELATED [KEGG_COMPOUND] +synonym: "thiamine" RELATED [UniProt] +synonym: "thiamine(1+) ion" RELATED [ChEBI] +synonym: "thiaminium" RELATED [ChEBI] +synonym: "Vitamin B1" RELATED [KEGG_COMPOUND] +xref: Beilstein:3595616 "Beilstein" +xref: Drug_Central:2832 "DrugCentral" +xref: DrugBank:DB00152 +xref: Gmelin:334462 "Gmelin" +xref: KEGG:C00378 +xref: KEGG:D08580 +xref: KNApSAcK:C00000775 +xref: LINCS:LSM-5996 +xref: PDBeChem:VIB +xref: Wikipedia:Thiamine +is_a: CHEBI:26948 ! thiamine +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:49107 ! thiamine(2+) + +[Term] +id: CHEBI:18391 +name: D-gluconate +namespace: chebi_ontology +alt_id: CHEBI:12955 +alt_id: CHEBI:20983 +alt_id: CHEBI:20985 +def: "A gluconate having D-configuration." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "195.050" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "195.14730" RELATED MASS [ChEBI] +synonym: "2,3,4,5,6-pentahydroxyhexanoate" RELATED [HMDB] +synonym: "C6H11O7" RELATED FORMULA [ChEBI] +synonym: "D-gluconate" EXACT IUPAC_NAME [IUPAC] +synonym: "D-gluconate" EXACT [UniProt] +synonym: "Dextronate" RELATED [HMDB] +synonym: "Glycogenate" RELATED [HMDB] +synonym: "Glyconate" RELATED [HMDB] +synonym: "InChI=1S/C6H12O7/c7-1-2(8)3(9)4(10)5(11)6(12)13/h2-5,7-11H,1H2,(H,12,13)/p-1/t2-,3-,4+,5-/m1/s1" RELATED InChI [ChEBI] +synonym: "Maltonate" RELATED [HMDB] +synonym: "OC[C@@H](O)[C@@H](O)[C@H](O)[C@@H](O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "RGHNJXZEOKUKBD-SQOUGZDYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3906521 "Beilstein" +xref: Gmelin:83544 "Gmelin" +xref: HMDB:HMDB00625 +xref: KEGG:C00257 "ChEBI" +xref: MetaCyc:GLUCONATE +xref: PMID:17439666 "Europe PMC" +xref: Reaxys:3906521 "Reaxys" +is_a: CHEBI:24265 ! gluconate +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:33198 ! D-gluconic acid + +[Term] +id: CHEBI:18401 +name: phenylacetate +namespace: chebi_ontology +alt_id: CHEBI:14779 +alt_id: CHEBI:25975 +def: "A monocarboxylic acid anion that is the conjugate base of phenylacetic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "135.045" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "135.13998" RELATED MASS [ChEBI] +synonym: "2-phenylethanoate" RELATED [ChEBI] +synonym: "[O-]C(=O)Cc1ccccc1" RELATED SMILES [ChEBI] +synonym: "C8H7O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C8H8O2/c9-8(10)6-7-4-2-1-3-5-7/h1-5H,6H2,(H,9,10)/p-1" RELATED InChI [ChEBI] +synonym: "phenylacetate" EXACT [UniProt] +synonym: "phenylacetate" EXACT IUPAC_NAME [IUPAC] +synonym: "phenylacetate anion" RELATED [ChEBI] +synonym: "phenylacetate(1-)" RELATED [ChEBI] +synonym: "phenylacetic acid anion" RELATED [ChEBI] +synonym: "WLJVXDMOQOGPHL-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3539899 "Beilstein" +xref: Gmelin:327522 "Gmelin" +xref: MetaCyc:PHENYLACETATE +xref: Reaxys:3539899 "Reaxys" +xref: UM-BBD_compID:c0211 "UM-BBD" +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: has_functional_parent CHEBI:30089 ! acetate +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:30745 ! phenylacetic acid + +[Term] +id: CHEBI:18407 +name: hydrogen cyanide +namespace: chebi_ontology +alt_id: CHEBI:13362 +alt_id: CHEBI:5786 +def: "A one-carbon compound consisting of a methine group triple bonded to a nitrogen atom" [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "27.011" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "27.02530" RELATED MASS [ChEBI] +synonym: "[CHN]" RELATED [IUPAC] +synonym: "Blausaeure" RELATED [ChEBI] +synonym: "C#N" RELATED SMILES [ChEBI] +synonym: "CHN" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cyanwasserstoff" RELATED [NIST_Chemistry_WebBook] +synonym: "formonitrile" RELATED [IUPAC] +synonym: "HCN" RELATED [KEGG_COMPOUND] +synonym: "hydridonitridocarbon" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrocyanic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "Hydrogen cyanide" EXACT [KEGG_COMPOUND] +synonym: "hydrogen cyanide" EXACT [IUPAC] +synonym: "hydrogen cyanide" EXACT [UniProt] +synonym: "hydrogen(nitridocarbonate)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/CHN/c1-2/h1H" RELATED InChI [ChEBI] +synonym: "LELOWRISYMNNSU-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "methanenitrile" EXACT IUPAC_NAME [IUPAC] +xref: CAS:74-90-8 "KEGG COMPOUND" +xref: HMDB:HMDB60292 +xref: KEGG:C01326 +xref: KNApSAcK:C00007569 +xref: MetaCyc:HCN +xref: PMID:19849830 "Europe PMC" +xref: PMID:26700190 "Europe PMC" +xref: PMID:26778429 "Europe PMC" +xref: PMID:26823582 "Europe PMC" +xref: PMID:26940198 "Europe PMC" +xref: PMID:27123778 "Europe PMC" +xref: Reaxys:1718793 "Reaxys" +xref: Wikipedia:Hydrogen_cyanide +is_a: CHEBI:33405 ! hydracid +is_a: CHEBI:64708 ! one-carbon compound +relationship: has_role CHEBI:64909 ! poison +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:17514 ! cyanide +relationship: is_tautomer_of CHEBI:36856 ! hydrogen isocyanide + +[Term] +id: CHEBI:18421 +name: superoxide +namespace: chebi_ontology +alt_id: CHEBI:15143 +alt_id: CHEBI:26839 +alt_id: CHEBI:7710 +subset: 3_STAR +synonym: "(O2)(.-)" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "31.990" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "31.99880" RELATED MASS [ChEBI] +synonym: "[O][O-]" RELATED SMILES [ChEBI] +synonym: "dioxidanidyl" EXACT IUPAC_NAME [IUPAC] +synonym: "dioxide(.1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "dioxide(1-)" RELATED [IUPAC] +synonym: "Hyperoxid" RELATED [ChEBI] +synonym: "hyperoxide" RELATED [IUPAC] +synonym: "InChI=1S/HO2/c1-2/h1H/p-1" RELATED InChI [ChEBI] +synonym: "O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "O2(-)" RELATED [IUPAC] +synonym: "O2(.-)" RELATED [IUPAC] +synonym: "O2-" RELATED [KEGG_COMPOUND] +synonym: "O2.-" RELATED [KEGG_COMPOUND] +synonym: "OUUQCZGPVNCOIJ-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "superoxide" EXACT [IUPAC] +synonym: "superoxide" EXACT [UniProt] +synonym: "Superoxide anion" RELATED [KEGG_COMPOUND] +synonym: "superoxide anion radical" RELATED [ChemIDplus] +synonym: "superoxide radical" RELATED [ChEBI] +synonym: "superoxide radical anion" RELATED [ChEBI] +synonym: "superoxyde" RELATED [ChEBI] +xref: CAS:11062-77-4 "NIST Chemistry WebBook" +xref: Gmelin:487 "Gmelin" +xref: KEGG:C00704 +is_a: CHEBI:33263 ! diatomic oxygen +is_a: CHEBI:36876 ! inorganic radical anion +is_a: CHEBI:61073 ! oxygen radical +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:19203 +name: 1H-pyrrole +namespace: chebi_ontology +def: "A tautomer of pyrrole that has the double bonds at positions 2 and 4." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-aza-2,4-cyclopentadiene" RELATED [ChemIDplus] +synonym: "1H-pyrrole" EXACT [UniProt] +synonym: "1H-pyrrole" EXACT IUPAC_NAME [IUPAC] +synonym: "67.042" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "67.08924" RELATED MASS [ChEBI] +synonym: "c1cc[nH]c1" RELATED SMILES [ChEBI] +synonym: "C4H5N" RELATED FORMULA [ChEBI] +synonym: "divinyleneimine" RELATED [ChemIDplus] +synonym: "divinylenimine" RELATED [NIST_Chemistry_WebBook] +synonym: "imidole" RELATED [ChemIDplus] +synonym: "InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H" RELATED InChI [ChEBI] +synonym: "KAESVJOAVNADME-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "monopyrrole" RELATED [ChemIDplus] +synonym: "Pyrrol" RELATED [NIST_Chemistry_WebBook] +synonym: "pyrrole" RELATED [ChemIDplus] +xref: Beilstein:1159 "Beilstein" +xref: CAS:109-97-7 "NIST Chemistry WebBook" +xref: Gmelin:1705 "Gmelin" +xref: PMID:1556177 "Europe PMC" +xref: PMID:2917974 "Europe PMC" +is_a: CHEBI:35556 ! pyrrole +relationship: is_tautomer_of CHEBI:35557 ! 3H-pyrrole +relationship: is_tautomer_of CHEBI:35558 ! 2H-pyrrole + +[Term] +id: CHEBI:19237 +name: 2'-deoxyadenosine 5'-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "2'-deoxyadenosine 5'-phosphates" RELATED [ChEBI] +is_a: CHEBI:19239 ! 2'-deoxyadenosine phosphate + +[Term] +id: CHEBI:19239 +name: 2'-deoxyadenosine phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "2'-deoxyadenosine phosphates" RELATED [ChEBI] +is_a: CHEBI:23612 ! deoxyadenosine phosphate + +[Term] +id: CHEBI:19254 +name: purine 2'-deoxyribonucleoside +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine 2'-deoxyribonucleosides" RELATED [ChEBI] +is_a: CHEBI:18274 ! 2'-deoxyribonucleoside +is_a: CHEBI:60173 ! purine deoxyribonucleoside + +[Term] +id: CHEBI:19260 +name: 2'-deoxyribonucleotide +namespace: chebi_ontology +subset: 3_STAR +synonym: "2'-deoxyribonucleotides" RELATED [ChEBI] +is_a: CHEBI:19569 ! 2-deoxyribose phosphate +is_a: CHEBI:4431 ! deoxyribonucleotide +is_a: CHEBI:47018 ! monohydroxytetrahydrofuran + +[Term] +id: CHEBI:19569 +name: 2-deoxyribose phosphate +namespace: chebi_ontology +alt_id: CHEBI:60749 +def: "A deoxyaldopentose phosphate in which the deoxyaldopentose is 2-deoxyribose." [] +subset: 3_STAR +synonym: "2-deoxyribose phosphates" RELATED [ChEBI] +synonym: "deoxyribose phosphate" RELATED [ChEBI] +is_a: CHEBI:23634 ! deoxyaldopentose phosphate + +[Term] +id: CHEBI:19834 +name: 3',5'-cyclic purine nucleotide +namespace: chebi_ontology +subset: 3_STAR +synonym: "3',5'-cyclic purine nucleotides" RELATED [ChEBI] +is_a: CHEBI:18375 ! nucleoside 3',5'-cyclic phosphate +is_a: CHEBI:36982 ! cyclic purine nucleotide + +[Term] +id: CHEBI:204928 +name: cefotaxime +namespace: chebi_ontology +alt_id: CHEBI:112504 +alt_id: CHEBI:3497 +alt_id: CHEBI:41475 +def: "A cephalosporin compound having acetoxymethyl and [2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino side groups." [] +subset: 3_STAR +synonym: "(6R,7R)-3-(acetoxymethyl)-7-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid" RELATED [IUPAC] +synonym: "(6R,7R)-3-Acetoxymethyl-7-{2-(2-amino-thiazol-4-yl)-2-[(Z)-methoxyimino]-acetylamino}-8-oxo-5-thia-1-aza-bicyclo[4.2.0]oct-2-ene-2-carboxylic acid" RELATED [ChEMBL] +synonym: "(6R,7R,Z)-3-(acetoxymethyl)-7-(2-(2-aminothiazol-4-yl)-2-(methoxyimino)acetamido)-8-oxo-5-thia-1-aza-bicyclo[4.2.0]oct-2-ene-2-carboxylic acid" RELATED [ChEMBL] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3-(acetoxymethyl)-7beta-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-3,4-didehydrocepham-4-carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "455.057" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "455.46500" RELATED MASS [ChEBI] +synonym: "[H][C@]12SCC(COC(C)=O)=C(N1C(=O)[C@H]2NC(=O)C(=N/OC)\\c1csc(N)n1)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C16H17N5O7S2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "cefotaxima" RELATED INN [ChemIDplus] +synonym: "cefotaxime" RELATED INN [KEGG_DRUG] +synonym: "cefotaximum" RELATED INN [ChemIDplus] +synonym: "Cephotaxime" RELATED [ChemIDplus] +synonym: "GPRBEKHLDVQUJE-QSWIMTSFSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C16H17N5O7S2/c1-6(22)28-3-7-4-29-14-10(13(24)21(14)11(7)15(25)26)19-12(23)9(20-27-2)8-5-30-16(17)18-8/h5,10,14H,3-4H2,1-2H3,(H2,17,18)(H,19,23)(H,25,26)/b20-9-/t10-,14-/m1/s1" RELATED InChI [ChEBI] +xref: Beilstein:1096643 "Beilstein" +xref: CAS:63527-52-6 "KEGG DRUG" +xref: colombos:CEFOTAXIME +xref: Drug_Central:546 "DrugCentral" +xref: DrugBank:DB00493 +xref: KEGG:C06885 +xref: KEGG:D07647 +xref: Patent:DE2556736 +xref: Patent:DE2702501 +xref: Patent:US4098888 +xref: Patent:US4152432 +xref: PDBeChem:CE3 +xref: PMID:10866367 "ChEMBL" +xref: PMID:11034276 "Europe PMC" +xref: PMID:11061623 "Europe PMC" +xref: PMID:11677129 "ChEMBL" +xref: PMID:12833570 "Europe PMC" +xref: PMID:1384868 "Europe PMC" +xref: PMID:14512220 "Europe PMC" +xref: PMID:1502708 "Europe PMC" +xref: PMID:15164972 "Europe PMC" +xref: PMID:15361989 "Europe PMC" +xref: PMID:15969234 "Europe PMC" +xref: PMID:1635063 "ChEMBL" +xref: PMID:17006042 "Europe PMC" +xref: PMID:17386217 "Europe PMC" +xref: PMID:18611527 "Europe PMC" +xref: PMID:19741292 "Europe PMC" +xref: PMID:21425867 "Europe PMC" +xref: PMID:24038683 "Europe PMC" +xref: PMID:24211456 "Europe PMC" +xref: PMID:9131470 "Europe PMC" +xref: Reaxys:1096643 "Reaxys" +xref: Wikipedia:Cefotaxime +is_a: CHEBI:23066 ! cephalosporin +is_a: CHEBI:36816 ! oxime O-ether +is_a: CHEBI:38418 ! 1,3-thiazole +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: is_conjugate_acid_of CHEBI:53670 ! cefotaxime(1-) + +[Term] +id: CHEBI:20569 +name: EC 2.5.1.19 (3-phosphoshikimate 1-carboxyvinyltransferase) inhibitor +namespace: chebi_ontology +def: "An EC 2.5.1.* (non-methyl-alkyl or aryl transferase) inhibitor that interferes with the action of 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)." [] +subset: 3_STAR +synonym: "3-enol-pyruvoylshikimate-5-phosphate synthase inhibitor" RELATED [ChEBI] +synonym: "3-enol-pyruvoylshikimate-5-phosphate synthase inhibitors" RELATED [ChEBI] +synonym: "3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) inhibitor" RELATED [ChEBI] +synonym: "3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) inhibitors" RELATED [ChEBI] +synonym: "3-phosphoshikimate 1-carboxyvinyltransferase inhibitor" RELATED [ChEBI] +synonym: "3-phosphoshikimate 1-carboxyvinyltransferase inhibitors" RELATED [ChEBI] +synonym: "5-enolpyruvylshikimate-3-phosphate synthase inhibitor" RELATED [ChEBI] +synonym: "5-enolpyruvylshikimate-3-phosphate synthase inhibitors" RELATED [ChEBI] +synonym: "EC 2.5.1.19 (3-phosphoshikimate 1-carboxyvinyltransferase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.5.1.19 inhibitor" RELATED [ChEBI] +synonym: "EC 2.5.1.19 inhibitors" RELATED [ChEBI] +synonym: "EPSP synthase inhibitor" RELATED [ChEBI] +synonym: "EPSP synthase inhibitors" RELATED [ChEBI] +synonym: "phosphoenolpyruvate:3-phosphoshikimate 5-O-(1-carboxyvinyl)-transferase inhibitor" RELATED [ChEBI] +synonym: "phosphoenolpyruvate:3-phosphoshikimate 5-O-(1-carboxyvinyl)-transferase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76663 ! EC 2.5.1.* (non-methyl-alkyl or aryl transferase) inhibitor + +[Term] +id: CHEBI:20664 +name: 5beta-cholane +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "330.329" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "330.59028" RELATED MASS [ChEBI] +synonym: "5beta-cholane" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@@]12CCCC[C@]1(C)[C@@]1([H])CC[C@]3(C)[C@]([H])(CC[C@@]3([H])[C@]1([H])CC2)[C@H](C)CCC" RELATED SMILES [ChEBI] +synonym: "C24H42" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C24H42/c1-5-8-17(2)20-12-13-21-19-11-10-18-9-6-7-15-23(18,3)22(19)14-16-24(20,21)4/h17-22H,5-16H2,1-4H3/t17-,18+,19+,20-,21+,22+,23+,24-/m1/s1" RELATED InChI [ChEBI] +synonym: "QSHQKIURKJITMZ-OBUPQJQESA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:2048472 "Beilstein" +is_a: CHEBI:35519 ! cholane + +[Term] +id: CHEBI:20702 +name: 2-aminopurines +namespace: chebi_ontology +def: "Any aminopurine having the amino substituent at the 2-position." [] +subset: 3_STAR +synonym: "2-aminopurines" EXACT [ChEBI] +is_a: CHEBI:22527 ! aminopurine + +[Term] +id: CHEBI:20706 +name: 6-aminopurines +namespace: chebi_ontology +def: "Any compound having 6-aminopurine (adenine) as part of its structure." [] +subset: 3_STAR +synonym: "6-aminopurines" EXACT [ChEBI] +xref: PMID:1646334 "Europe PMC" +xref: PMID:18524423 "Europe PMC" +xref: PMID:7342604 "Europe PMC" +is_a: CHEBI:22527 ! aminopurine + +[Term] +id: CHEBI:20854 +name: ATP synthase inhibitor +namespace: chebi_ontology +def: "A mitochondrial respiratory-chain inhibitor that interferes with the action of ATP synthase." [] +subset: 3_STAR +is_a: CHEBI:25355 ! mitochondrial respiratory-chain inhibitor +is_a: CHEBI:73216 ! EC 3.6.* (hydrolases acting on acid anhydrides) inhibitor + +[Term] +id: CHEBI:21006 +name: D-glucose monophosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "C6H13O9P" RELATED FORMULA [ChEBI] +synonym: "D-glucose monophosphate" EXACT [ChEBI] +synonym: "D-glucose monophosphates" RELATED [ChEBI] +is_a: CHEBI:21008 ! glucose phosphate +relationship: has_functional_parent CHEBI:17634 ! D-glucose + +[Term] +id: CHEBI:21008 +name: glucose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "glucose phosphates" RELATED [ChEBI] +is_a: CHEBI:21037 ! aldohexose phosphate + +[Term] +id: CHEBI:21037 +name: aldohexose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "aldohexose phosphate" EXACT [ChEBI] +synonym: "aldohexose phosphates" RELATED [ChEBI] +is_a: CHEBI:35131 ! aldose phosphate +is_a: CHEBI:47878 ! hexose phosphate + +[Term] +id: CHEBI:21241 +name: vitamin C +namespace: chebi_ontology +subset: 3_STAR +synonym: "Vitamin C" EXACT [ChEBI] +synonym: "vitamina C" RELATED [ChEBI] +synonym: "vitamine C" RELATED [ChEBI] +synonym: "vitaminum C" RELATED [ChEBI] +xref: PMID:21885436 "Europe PMC" +is_a: CHEBI:27314 ! water-soluble vitamin +is_a: CHEBI:85046 ! skin lightening agent + +[Term] +id: CHEBI:21336 +name: L-idonic acid +namespace: chebi_ontology +def: "The L-enantiomer of idonic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "196.058" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "196.15530" RELATED MASS [ChEBI] +synonym: "C6H12O7" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H12O7/c7-1-2(8)3(9)4(10)5(11)6(12)13/h2-5,7-11H,1H2,(H,12,13)/t2-,3+,4-,5+/m0/s1" RELATED InChI [ChEBI] +synonym: "L-idonic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "OC[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "RGHNJXZEOKUKBD-SKNVOMKLSA-N" RELATED InChIKey [ChEBI] +xref: CAS:1114-17-6 "KEGG COMPOUND" +xref: ECMDB:ECMDB21376 +xref: KEGG:C00770 +xref: PMID:1182275 "Europe PMC" +xref: PMID:14973046 "Europe PMC" +xref: Reaxys:1726056 "Reaxys" +is_a: CHEBI:21337 ! idonic acid +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:17796 ! L-idonate + +[Term] +id: CHEBI:21337 +name: idonic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "C6H12O7" RELATED FORMULA [ChEBI] +synonym: "L-idonic acids" RELATED [ChEBI] +is_a: CHEBI:33752 ! hexonic acid +relationship: is_conjugate_acid_of CHEBI:33529 ! idonate + +[Term] +id: CHEBI:21545 +name: N-acetyl-L-amino acid +namespace: chebi_ontology +def: "An L-amino acid having an N-acetyl substituent." [] +subset: 3_STAR +is_a: CHEBI:21575 ! N-acetyl-amino acid +is_a: CHEBI:21644 ! N-acyl-L-amino acid + +[Term] +id: CHEBI:21575 +name: N-acetyl-amino acid +namespace: chebi_ontology +alt_id: CHEBI:7105 +def: "An N-acyl-amino acid that has acetyl as the acyl group." [] +subset: 3_STAR +synonym: "N-Acetyl amino acid" RELATED [KEGG_COMPOUND] +synonym: "N-acetyl-amino acids" RELATED [ChEBI] +is_a: CHEBI:22160 ! acetamides +is_a: CHEBI:22195 ! acetyl-amino acid +is_a: CHEBI:51569 ! N-acyl-amino acid +relationship: has_functional_parent CHEBI:15366 ! acetic acid + +[Term] +id: CHEBI:21601 +name: N-acetyl-D-hexosamine +namespace: chebi_ontology +def: "Any N-acetylhexosamine in which the hexosamine has D-configuration. The structure provided is an illustrative example of the pyranose form of an N-acetyl-D-hexosamine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "221.090" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "221.208" RELATED MASS [ChEBI] +synonym: "C1(C(C([C@@H](CO)OC1O)O)O)NC(C)=O" RELATED SMILES [ChEBI] +synonym: "C8H15NO6" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5?,6?,7?,8?/m1/s1" RELATED InChI [ChEBI] +synonym: "N-acetyl-D-hexosamine" EXACT [UniProt] +synonym: "N-acetyl-D-hexosamines" RELATED [ChEBI] +synonym: "N-acetylhexosamine" RELATED [ChEBI] +synonym: "N-acetylhexosamines" RELATED [ChEBI] +synonym: "OVRNDRQMDRJTHS-BKJPEWSUSA-N" RELATED InChIKey [ChEBI] +is_a: CHEBI:7203 ! N-acetylhexosamine + +[Term] +id: CHEBI:21619 +name: N-acetylneuraminates +namespace: chebi_ontology +subset: 3_STAR +synonym: "N-acetylneuraminate" RELATED [ChEBI] +is_a: CHEBI:21663 ! N-acylneuraminates + +[Term] +id: CHEBI:21622 +name: N-acetylneuraminic acids +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:16498 ! N-acylneuraminic acid + +[Term] +id: CHEBI:21637 +name: N-acyl-D-glucosamine phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "N-acyl-D-glucosamine phosphates" RELATED [ChEBI] +is_a: CHEBI:24269 ! glucosamine phosphate + +[Term] +id: CHEBI:21638 +name: N-acylglucosamine +namespace: chebi_ontology +subset: 3_STAR +synonym: "N-acylglucosamine" EXACT [ChEBI] +synonym: "N-acylglucosamines" RELATED [ChEBI] +is_a: CHEBI:21656 ! N-acyl-hexosamine +is_a: CHEBI:24271 ! glucosamines + +[Term] +id: CHEBI:21644 +name: N-acyl-L-amino acid +namespace: chebi_ontology +def: "Any N-acylamino acid having L-configuration." [] +subset: 3_STAR +is_a: CHEBI:51569 ! N-acyl-amino acid +relationship: is_enantiomer_of CHEBI:15778 ! N-acyl-D-amino acid + +[Term] +id: CHEBI:21655 +name: N-acylgalactosamine +namespace: chebi_ontology +subset: 3_STAR +synonym: "N-acylgalactosamine" EXACT [ChEBI] +synonym: "N-acylgalactosamines" RELATED [ChEBI] +is_a: CHEBI:21656 ! N-acyl-hexosamine +is_a: CHEBI:24156 ! galactosamine + +[Term] +id: CHEBI:21656 +name: N-acyl-hexosamine +namespace: chebi_ontology +subset: 3_STAR +synonym: "N-acyl-hexosamine" EXACT [ChEBI] +synonym: "N-acyl-hexosamines" RELATED [ChEBI] +is_a: CHEBI:24586 ! hexosamine + +[Term] +id: CHEBI:21663 +name: N-acylneuraminates +namespace: chebi_ontology +subset: 3_STAR +synonym: "N-acylneuraminate" RELATED [ChEBI] +is_a: CHEBI:25506 ! neuraminates + +[Term] +id: CHEBI:21731 +name: N-glycosyl compound +namespace: chebi_ontology +def: "A glycosyl compound arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to a nitrogen atom, thus creating a C-N bond." [] +subset: 3_STAR +synonym: "glycosylamine" EXACT IUPAC_NAME [IUPAC] +synonym: "glycosylamines" RELATED [IUPAC] +synonym: "N-glycoside" RELATED [ChEBI] +synonym: "N-glycosides" RELATED [ChEBI] +synonym: "N-glycosyl compounds" RELATED [ChEBI] +is_a: CHEBI:35352 ! organonitrogen compound +is_a: CHEBI:63161 ! glycosyl compound + +[Term] +id: CHEBI:21759 +name: N-methyl-N'-nitro-N-nitrosoguanidine +namespace: chebi_ontology +alt_id: CHEBI:34872 +def: "An N-nitroguanidine compound having nitroso and methyl substituents at the N'-position" [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-Methyl-1-nitroso-3-nitroguanidine" RELATED [ChemIDplus] +synonym: "1-Methyl-3-nitro-1-nitrosoguanidine" RELATED [KEGG_COMPOUND] +synonym: "1-methyl-3-nitro-1-nitrosoguanidine" EXACT IUPAC_NAME [IUPAC] +synonym: "1-Nitroso-3-nitro-1-methylguanidine" RELATED [ChemIDplus] +synonym: "147.039" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "147.09280" RELATED MASS [ChEBI] +synonym: "C2H5N5O3" RELATED FORMULA [ChEBI] +synonym: "CN(N=O)C(=N)N[N+]([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C2H5N5O3/c1-6(5-8)2(3)4-7(9)10/h1H3,(H2,3,4)" RELATED InChI [ChEBI] +synonym: "Methylnitronitrosoguanidine" RELATED [KEGG_COMPOUND] +synonym: "MNG" RELATED [ChemIDplus] +synonym: "MNNG" RELATED [KEGG_COMPOUND] +synonym: "MNNG" RELATED [ChemIDplus] +synonym: "N'-Nitro-N-nitroso-N-methylguanidine" RELATED [ChemIDplus] +synonym: "N-Methyl-N',2-dioxohydrazinecarboximidohydrazide 2-oxide" RELATED [NIST_Chemistry_WebBook] +synonym: "N-Methyl-N'-nitro-N-nitrosoguanidine" EXACT [KEGG_COMPOUND] +synonym: "N-Methyl-N-nitroso-N'-nitroguanidine" RELATED [ChEBI] +synonym: "N-Methyl-N-nitroso-N'-nitroguanidine" RELATED [ChemIDplus] +synonym: "N-Methyl-N-nitrosonitroguanidin" RELATED [ChEBI] +synonym: "N-Nitroso-N-methyl-N'-nitroguanidine" RELATED [ChemIDplus] +synonym: "VZUNGTLZRAYYDE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1779490 "Beilstein" +xref: CAS:70-25-7 "ChemIDplus" +xref: KEGG:C14592 +is_a: CHEBI:35800 ! nitroso compound +relationship: has_functional_parent CHEBI:39179 ! nitroguanidine +relationship: has_role CHEBI:22333 ! alkylating agent + +[Term] +id: CHEBI:22063 +name: sulfoxide +namespace: chebi_ontology +alt_id: CHEBI:35813 +def: "An organosulfur compound having the structure R2S=O or R2C=S=O (R =/= H)." [] +subset: 3_STAR +synonym: "S-oxides" RELATED [ChEBI] +synonym: "sulfoxide" EXACT [ChEBI] +synonym: "sulfoxides" RELATED [ChEBI] +is_a: CHEBI:33261 ! organosulfur compound + +[Term] +id: CHEBI:22160 +name: acetamides +namespace: chebi_ontology +def: "Compounds with the general formula RNHC(=O)CH3." [] +subset: 3_STAR +is_a: CHEBI:37622 ! carboxamide + +[Term] +id: CHEBI:22194 +name: acetyl-L-serine +namespace: chebi_ontology +def: "An acetyl-amino acid in which the amino acid specified is L-serine." [] +subset: 3_STAR +synonym: "acetyl-L-serines" RELATED [ChEBI] +is_a: CHEBI:22195 ! acetyl-amino acid +is_a: CHEBI:84135 ! L-serine derivative + +[Term] +id: CHEBI:22195 +name: acetyl-amino acid +namespace: chebi_ontology +def: "Any amino acid derivative that is the N-acetyl or O-acetyl derivative of an amino acid." [] +subset: 3_STAR +synonym: "acetyl-amino acids" RELATED [ChEBI] +is_a: CHEBI:83821 ! amino acid derivative + +[Term] +id: CHEBI:22213 +name: acridines +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:39206 ! dibenzopyridine + +[Term] +id: CHEBI:22221 +name: acyl group +namespace: chebi_ontology +def: "An organic group formed by removing one or more hydroxy groups from an oxoacid that has the general structure RkE(=O)l(OH)m (l =/= 0). Although the term is almost always applied to organic compounds, with carboxylic acid as the oxoacid, acyl groups can in principle be derived from other types of acids such as sulfonic acids or phosphonic acids." [] +subset: 3_STAR +synonym: "acyl group" EXACT [IUPAC] +synonym: "acyl groups" RELATED [ChEBI] +synonym: "alkanoyl" EXACT IUPAC_NAME [IUPAC] +synonym: "alkanoyl group" RELATED [ChEBI] +synonym: "groupe acyle" RELATED [IUPAC] +is_a: CHEBI:33247 ! organic group + +[Term] +id: CHEBI:22251 +name: adenosine bisphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "adenosine bisphosphates" RELATED [ChEBI] +is_a: CHEBI:22256 ! adenosine phosphate +is_a: CHEBI:61078 ! purine nucleoside bisphosphate +is_a: CHEBI:61079 ! ribonucleoside bisphosphate + +[Term] +id: CHEBI:22256 +name: adenosine phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "adenosine phosphates" RELATED [ChEBI] +is_a: CHEBI:61296 ! adenyl ribonucleotide +relationship: has_functional_parent CHEBI:16335 ! adenosine + +[Term] +id: CHEBI:22260 +name: adenosines +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:26399 ! purine ribonucleoside +relationship: has_functional_parent CHEBI:16708 ! adenine + +[Term] +id: CHEBI:22289 +name: aldaric acid anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "aldarate" RELATED [ChEBI] +synonym: "aldarates" RELATED [ChEBI] +synonym: "aldaric acid anions" RELATED [ChEBI] +is_a: CHEBI:33721 ! carbohydrate acid anion +is_a: CHEBI:35693 ! dicarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:22290 ! aldaric acid + +[Term] +id: CHEBI:22290 +name: aldaric acid +namespace: chebi_ontology +def: "Dicarboxylic acids formed from aldoses by replacement of both terminal groups (CHO and CH2OH) by carboxy groups." [] +subset: 3_STAR +synonym: "aldaric acid" EXACT [ChEBI] +synonym: "aldaric acids" RELATED [ChEBI] +is_a: CHEBI:33720 ! carbohydrate acid +is_a: CHEBI:35692 ! dicarboxylic acid +relationship: is_conjugate_acid_of CHEBI:22289 ! aldaric acid anion + +[Term] +id: CHEBI:22297 +name: alditol phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "alditol phosphate" EXACT [ChEBI] +synonym: "alditol phosphates" RELATED [ChEBI] +is_a: CHEBI:26816 ! carbohydrate phosphate +is_a: CHEBI:63423 ! alditol derivative + +[Term] +id: CHEBI:22299 +name: aldonate +namespace: chebi_ontology +subset: 3_STAR +synonym: "aldonate" EXACT [ChEBI] +synonym: "aldonates" RELATED [ChEBI] +is_a: CHEBI:33721 ! carbohydrate acid anion +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:22301 ! aldonic acid + +[Term] +id: CHEBI:22301 +name: aldonic acid +namespace: chebi_ontology +def: "Any carbohydrate acid formed by oxidising the aldehyde functional group of an aldose to a carboxylic acid functional group. Aldonic acids have the general formula HOCH2[CH(OH)]nC(=O)OH." [] +subset: 3_STAR +synonym: "aldonic acid" EXACT [ChEBI] +synonym: "aldonic acids" RELATED [ChEBI] +is_a: CHEBI:25384 ! monocarboxylic acid +is_a: CHEBI:33720 ! carbohydrate acid +relationship: is_conjugate_acid_of CHEBI:22299 ! aldonate +relationship: is_conjugate_base_of CHEBI:71671 ! aldonate(1-) + +[Term] +id: CHEBI:22313 +name: alkaline earth metal atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "alkaline earth metal" RELATED [ChEBI] +synonym: "alkaline earth metals" EXACT IUPAC_NAME [IUPAC] +synonym: "alkaline-earth metal" RELATED [ChEBI] +synonym: "alkaline-earth metals" RELATED [ChEBI] +synonym: "Erdalkalimetall" RELATED [ChEBI] +synonym: "Erdalkalimetalle" RELATED [ChEBI] +synonym: "metal alcalino-terreux" RELATED [ChEBI] +synonym: "metal alcalinoterreo" RELATED [ChEBI] +synonym: "metales alcalinoterreos" RELATED [ChEBI] +synonym: "metaux alcalino-terreux" RELATED [ChEBI] +is_a: CHEBI:33318 ! main group element atom +is_a: CHEBI:33521 ! metal atom +is_a: CHEBI:33559 ! s-block element atom + +[Term] +id: CHEBI:22314 +name: alkali metal atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "alkali metal" RELATED [ChEBI] +synonym: "alkali metals" EXACT IUPAC_NAME [IUPAC] +synonym: "Alkalimetall" RELATED [ChEBI] +synonym: "Alkalimetalle" RELATED [ChEBI] +synonym: "metal alcalin" RELATED [ChEBI] +synonym: "metal alcalino" RELATED [ChEBI] +synonym: "metales alcalinos" RELATED [ChEBI] +synonym: "metaux alcalins" RELATED [ChEBI] +is_a: CHEBI:33318 ! main group element atom +is_a: CHEBI:33521 ! metal atom +is_a: CHEBI:33559 ! s-block element atom + +[Term] +id: CHEBI:22323 +name: alkyl group +namespace: chebi_ontology +def: "A univalent group -CnH2n+1 derived from an alkane by removal of a hydrogen atom from any carbon atom." [] +subset: 3_STAR +synonym: "alkyl group" EXACT IUPAC_NAME [IUPAC] +synonym: "alkyl groups" EXACT IUPAC_NAME [IUPAC] +synonym: "groupe alkyle" RELATED [IUPAC] +synonym: "grupo alquilo" RELATED [IUPAC] +synonym: "grupos alquilo" RELATED [IUPAC] +is_a: CHEBI:33248 ! hydrocarbyl group +relationship: is_substituent_group_from CHEBI:18310 ! alkane + +[Term] +id: CHEBI:22324 +name: alkyl phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "alkyl phosphates" RELATED [ChEBI] +is_a: CHEBI:25703 ! organic phosphate +is_a: CHEBI:37734 ! phosphoric ester + +[Term] +id: CHEBI:22331 +name: alkylamines +namespace: chebi_ontology +def: "Any amine formally derived from ammonia by replacing one, two or three hydrogen atoms by alkyl groups." [] +subset: 3_STAR +is_a: CHEBI:32952 ! amine + +[Term] +id: CHEBI:22333 +name: alkylating agent +namespace: chebi_ontology +def: "Highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning. It could be used as an antineoplastic agent, but it might be very toxic, with carcinogenic, mutagenic, teratogenic, and immunosuppressant actions. It could also be used as a component of poison gases." [] +subset: 3_STAR +is_a: CHEBI:25435 ! mutagen + +[Term] +id: CHEBI:22479 +name: amino cyclitol glycoside +namespace: chebi_ontology +subset: 3_STAR +synonym: "amino cyclitol glycoside" EXACT [ChEBI] +synonym: "amino cyclitol glycosides" RELATED [ChEBI] +is_a: CHEBI:23451 ! cyclitol +is_a: CHEBI:24400 ! glycoside + +[Term] +id: CHEBI:22480 +name: amino disaccharide +namespace: chebi_ontology +def: "A disaccharide derivative that is a disaccharide having one or more substituted or unsubstituted amino groups in place of hydroxy groups at unspecified positions." [] +subset: 3_STAR +synonym: "amino-disaccharides" RELATED [ChEBI] +is_a: CHEBI:22483 ! amino oligosaccharide +is_a: CHEBI:63353 ! disaccharide derivative + +[Term] +id: CHEBI:22483 +name: amino oligosaccharide +namespace: chebi_ontology +subset: 3_STAR +synonym: "amino oligosaccharides" RELATED [ChEBI] +is_a: CHEBI:63563 ! oligosaccharide derivative + +[Term] +id: CHEBI:22494 +name: aminobenzoate +namespace: chebi_ontology +subset: 3_STAR +synonym: "aminobenzoates" RELATED [ChEBI] +is_a: CHEBI:22718 ! benzoates + +[Term] +id: CHEBI:22495 +name: aminobenzoic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "Aminobenzoesaeure" RELATED [ChEBI] +synonym: "aminobenzoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "C7H7NO2" RELATED FORMULA [ChEBI] +is_a: CHEBI:22723 ! benzoic acids +is_a: CHEBI:33856 ! aromatic amino acid + +[Term] +id: CHEBI:22507 +name: aminoglycoside antibiotic +namespace: chebi_ontology +subset: 3_STAR +synonym: "aminoglycoside antibiotics" RELATED [ChEBI] +is_a: CHEBI:23007 ! carbohydrate-containing antibiotic +is_a: CHEBI:47779 ! aminoglycoside + +[Term] +id: CHEBI:22527 +name: aminopurine +namespace: chebi_ontology +def: "Any purine having at least one amino substituent." [] +subset: 3_STAR +synonym: "aminopurines" RELATED [ChEBI] +is_a: CHEBI:26401 ! purines + +[Term] +id: CHEBI:22529 +name: amino sugar phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "amino sugar phosphate" EXACT [ChEBI] +synonym: "amino sugar phosphates" RELATED [ChEBI] +is_a: CHEBI:28963 ! amino sugar +is_a: CHEBI:33447 ! phospho sugar + +[Term] +id: CHEBI:22562 +name: anilines +namespace: chebi_ontology +def: "Any aromatic amine that is benzene carrying at least one amino substituent and its substituted derivatives." [] +subset: 3_STAR +is_a: CHEBI:22712 ! benzenes +is_a: CHEBI:33860 ! aromatic amine + +[Term] +id: CHEBI:22563 +name: anion +namespace: chebi_ontology +def: "A monoatomic or polyatomic species having one or more elementary charges of the electron." [] +subset: 3_STAR +synonym: "Anion" EXACT [ChEBI] +synonym: "anion" EXACT IUPAC_NAME [IUPAC] +synonym: "anion" EXACT [ChEBI] +synonym: "Anionen" RELATED [ChEBI] +synonym: "aniones" RELATED [ChEBI] +synonym: "anions" RELATED [IUPAC] +is_a: CHEBI:24870 ! ion +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:22565 +name: ansamycin +namespace: chebi_ontology +def: "A class of macrocyclic lactams that consist of an aromatic (phenyl or naphthyl) or quinonoid (benzoquinone or naphthoquinone) moiety that is bridged by an aliphatic chain." [] +subset: 3_STAR +xref: Wikipedia:Ansamycin +is_a: CHEBI:24995 ! lactam +is_a: CHEBI:26188 ! polyketide +is_a: CHEBI:51026 ! macrocycle + +[Term] +id: CHEBI:22586 +name: antioxidant +namespace: chebi_ontology +def: "A substance that opposes oxidation or inhibits reactions brought about by dioxygen or peroxides." [] +subset: 3_STAR +synonym: "antioxidants" RELATED [ChEBI] +synonym: "antioxydant" RELATED [ChEBI] +synonym: "antoxidant" RELATED [ChEBI] +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:22587 +name: antiviral agent +namespace: chebi_ontology +def: "A substance that destroys or inhibits replication of viruses." [] +subset: 3_STAR +synonym: "anti-viral agent" RELATED [ChEBI] +synonym: "anti-viral agents" RELATED [ChEBI] +synonym: "antiviral" RELATED [ChEBI] +synonym: "antiviral agents" RELATED [ChEBI] +synonym: "antivirals" RELATED [ChEBI] +is_a: CHEBI:33281 ! antimicrobial agent + +[Term] +id: CHEBI:22599 +name: arabinose +namespace: chebi_ontology +alt_id: CHEBI:33943 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.12990" RELATED MASS [ChEBI] +synonym: "Ara" RELATED [JCBN] +synonym: "arabino-pentose" EXACT IUPAC_NAME [IUPAC] +synonym: "arabinose" EXACT [ChEBI] +synonym: "arabinose" EXACT IUPAC_NAME [IUPAC] +synonym: "C5H10O5" RELATED FORMULA [ChEBI] +xref: CAS:147-81-9 "ChemIDplus" +xref: colombos:ARABINOSE +xref: HMDB:HMDB29942 +xref: Wikipedia:Arabinose +is_a: CHEBI:33916 ! aldopentose +relationship: has_role CHEBI:78675 ! fundamental metabolite + +[Term] +id: CHEBI:22632 +name: arsenic molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "arsenic compounds" RELATED [ChEBI] +synonym: "arsenic molecular entities" RELATED [ChEBI] +synonym: "arsenic molecular entity" EXACT [ChEBI] +is_a: CHEBI:33302 ! pnictogen molecular entity +relationship: has_part CHEBI:27563 ! arsenic atom + +[Term] +id: CHEBI:22633 +name: arsenite ion +namespace: chebi_ontology +def: "An arsenic oxoanion resulting from the removal of one or more protons from arsenous acid." [] +subset: 3_STAR +synonym: "arsenite anions" RELATED [ChEBI] +synonym: "arsenite ions" RELATED [ChEBI] +is_a: CHEBI:24834 ! inorganic anion +is_a: CHEBI:35776 ! arsenic oxoanion + +[Term] +id: CHEBI:22645 +name: arenecarboxamide +namespace: chebi_ontology +def: "A monocarboxylic acid amide in which the amide linkage is bonded directly to an arene ring system." [] +subset: 3_STAR +synonym: "arenecarboxamides" RELATED [ChEBI] +is_a: CHEBI:29347 ! monocarboxylic acid amide +is_a: CHEBI:62733 ! aromatic amide + +[Term] +id: CHEBI:22651 +name: ascorbate +namespace: chebi_ontology +def: "A ketoaldonate that is the conjugate base of ascorbic acid." [] +subset: 3_STAR +is_a: CHEBI:24961 ! ketoaldonate +relationship: has_role CHEBI:22586 ! antioxidant +relationship: is_conjugate_base_of CHEBI:22652 ! ascorbic acid + +[Term] +id: CHEBI:22652 +name: ascorbic acid +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:24963 ! ketoaldonic acid +relationship: is_conjugate_acid_of CHEBI:22651 ! ascorbate + +[Term] +id: CHEBI:22653 +name: asparagine +namespace: chebi_ontology +def: "An alpha-amino acid in which one of the hydrogens attached to the alpha-carbon of glycine is substituted by a 2-amino-2-oxoethyl group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "132.053" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "132.11800" RELATED MASS [ChEBI] +synonym: "2,4-diamino-4-oxobutanoic acid" RELATED [IUPAC] +synonym: "2-amino-3-carbamoylpropanoic acid" RELATED [JCBN] +synonym: "ASN" RELATED [ChEBI] +synonym: "Asn" RELATED [ChEBI] +synonym: "Asparagin" RELATED [ChEBI] +synonym: "asparagina" RELATED [ChEBI] +synonym: "asparagine" EXACT IUPAC_NAME [IUPAC] +synonym: "C4H8N2O3" RELATED FORMULA [ChEBI] +synonym: "DCXYFEDJOCDNAF-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "DL-Asparagine" RELATED [KEGG_COMPOUND] +synonym: "Hasp" RELATED [IUPAC] +synonym: "InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)" RELATED InChI [ChEBI] +synonym: "N" RELATED [ChEBI] +synonym: "NC(CC(N)=O)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:1723525 "Beilstein" +xref: CAS:3130-87-8 "ChemIDplus" +xref: Gmelin:279043 "Gmelin" +xref: KEGG:C16438 +xref: PMID:22264337 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: Reaxys:1723525 "Reaxys" +xref: Wikipedia:Asparagine +is_a: CHEBI:33704 ! alpha-amino acid +is_a: CHEBI:35735 ! dicarboxylic acid monoamide +relationship: has_part CHEBI:50330 ! 2-amino-2-oxoethyl group +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_acid_of CHEBI:32660 ! asparaginate +relationship: is_conjugate_base_of CHEBI:32661 ! asparaginium + +[Term] +id: CHEBI:22658 +name: aspartate family amino acid +namespace: chebi_ontology +def: "An L-alpha-amino acid which is L-aspartic acid or any of the essential amino acids biosynthesised from it (asparagine, lysine, methionine, threonine and isoleucine). A closed class." [] +subset: 3_STAR +synonym: "aspartate family amino acids" RELATED [ChEBI] +synonym: "aspartic acid family amino acid" RELATED [ChEBI] +synonym: "aspartic acid family amino acids" RELATED [ChEBI] +synonym: "oxaloacetate family amino acid" RELATED [ChEBI] +synonym: "oxaloacetate family amino acids" RELATED [ChEBI] +synonym: "oxaloacetate/aspartate family amino acid" RELATED [ChEBI] +synonym: "oxaloacetate/aspartate family amino acids" RELATED [ChEBI] +xref: PMID:4386082 "Europe PMC" +xref: PMID:4394351 "Europe PMC" +xref: PMID:4721772 "Europe PMC" +xref: PMID:5016260 "Europe PMC" +xref: PMID:5074276 "Europe PMC" +is_a: CHEBI:15705 ! L-alpha-amino acid +is_a: CHEBI:83813 ! proteinogenic amino acid +relationship: MCO:0000858 MCO:0000864 ! sucrose 15% carbon source + +[Term] +id: CHEBI:22660 +name: aspartic acid +namespace: chebi_ontology +def: "An alpha-amino acid that consists of succinic acid bearing a single alpha-amino substituent" [] +subset: 3_STAR +synonym: "(+-)-Aspartic acid" RELATED [ChemIDplus] +synonym: "(R,S)-Aspartic acid" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "133.038" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "133.10272" RELATED MASS [ChEBI] +synonym: "2-aminobutanedioic acid" RELATED [IUPAC] +synonym: "Asp" RELATED [ChEBI] +synonym: "Aspartic acid" EXACT [KEGG_COMPOUND] +synonym: "aspartic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "C4H7NO4" RELATED FORMULA [ChEBI] +synonym: "CKLJMWTZIZZHCS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "D" RELATED [ChEBI] +synonym: "DL-Aminosuccinic acid" RELATED [ChemIDplus] +synonym: "DL-Asparagic acid" RELATED [ChemIDplus] +synonym: "InChI=1S/C4H7NO4/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H,6,7)(H,8,9)" RELATED InChI [ChEBI] +synonym: "NC(CC(O)=O)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:774618 "Beilstein" +xref: CAS:617-45-8 "ChemIDplus" +xref: Gmelin:185140 "Gmelin" +xref: KEGG:C16433 +xref: PMID:22264337 "Europe PMC" +xref: Reaxys:774618 "Reaxys" +xref: Wikipedia:Aspartic_acid +is_a: CHEBI:33704 ! alpha-amino acid +is_a: CHEBI:66873 ! C4-dicarboxylic acid +relationship: has_part CHEBI:41402 ! carboxymethyl group +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:35391 ! aspartate(1-) + +[Term] +id: CHEBI:22676 +name: auxin +namespace: chebi_ontology +def: "Any of a group of compounds, both naturally occurring and synthetic, that induce cell elongation in plant stems (from Greek alphaupsilonxialphanuomega, \"to grow\")." [] +subset: 3_STAR +synonym: "auxins" RELATED [ChEBI] +xref: Wikipedia:Auxin +is_a: CHEBI:37848 ! plant hormone + +[Term] +id: CHEBI:22695 +name: base +namespace: chebi_ontology +def: "A molecular entity having an available pair of electrons capable of forming a covalent bond with a hydron (Bronsted base) or with the vacant orbital of some other molecular entity (Lewis base)." [] +subset: 3_STAR +synonym: "Base" EXACT [ChEBI] +synonym: "base" EXACT [ChEBI] +synonym: "base" EXACT IUPAC_NAME [IUPAC] +synonym: "Base1" RELATED [KEGG_COMPOUND] +synonym: "Base2" RELATED [KEGG_COMPOUND] +synonym: "Basen" RELATED [ChEBI] +synonym: "bases" RELATED [ChEBI] +synonym: "Nucleobase" RELATED [KEGG_COMPOUND] +xref: KEGG:C00701 +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:22702 +name: benzamides +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:22645 ! arenecarboxamide + +[Term] +id: CHEBI:22712 +name: benzenes +namespace: chebi_ontology +def: "Any benzenoid aromatic compound consisting of the benzene skeleton and its substituted derivatives." [] +subset: 3_STAR +is_a: CHEBI:33836 ! benzenoid aromatic compound + +[Term] +id: CHEBI:22718 +name: benzoates +namespace: chebi_ontology +def: "A monocarboxylic acid anion obtained by deprotonation of the carboxy group of any benzoic acid." [] +subset: 3_STAR +synonym: "benzoate anion" RELATED [ChEBI] +is_a: CHEBI:35757 ! monocarboxylic acid anion + +[Term] +id: CHEBI:22723 +name: benzoic acids +namespace: chebi_ontology +def: "Any aromatic carboxylic acid that consists of benzene in which at least a single hydrogen has been substituted by a carboxy group." [] +subset: 3_STAR +is_a: CHEBI:22712 ! benzenes +is_a: CHEBI:33859 ! aromatic carboxylic acid + +[Term] +id: CHEBI:22727 +name: benzopyran +namespace: chebi_ontology +subset: 3_STAR +synonym: "benzopyrans" RELATED [ChEBI] +xref: Wikipedia:Benzopyran +is_a: CHEBI:38104 ! oxacycle +is_a: CHEBI:38166 ! organic heteropolycyclic compound + +[Term] +id: CHEBI:22728 +name: benzopyrrole +namespace: chebi_ontology +subset: 3_STAR +synonym: "benzopyrroles" RELATED [ChEBI] +is_a: CHEBI:27171 ! organic heterobicyclic compound +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound +is_a: CHEBI:38180 ! polycyclic heteroarene + +[Term] +id: CHEBI:22744 +name: benzyl group +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "91.055" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "91.13048" RELATED MASS [ChEBI] +synonym: "benzyl" EXACT IUPAC_NAME [IUPAC] +synonym: "Bn" RELATED [ChEBI] +synonym: "C6H5-CH2-" RELATED [IUPAC] +synonym: "C7H7" RELATED FORMULA [ChEBI] +synonym: "phenylalanine side-chain" RELATED [ChEBI] +synonym: "phenylmethyl" RELATED [IUPAC] +is_a: CHEBI:33452 ! benzylic group +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group +relationship: is_substituent_group_from CHEBI:17578 ! toluene + +[Term] +id: CHEBI:22823 +name: beta-alanine derivative +namespace: chebi_ontology +subset: 1_STAR +synonym: "beta-alanine derivatives" RELATED [ChEBI] +is_a: CHEBI:83812 ! non-proteinogenic amino acid derivative +relationship: has_functional_parent CHEBI:16958 ! beta-alanine + +[Term] +id: CHEBI:22860 +name: amino-acid betaine +namespace: chebi_ontology +def: "Any amino acid-derived zwitterion - such as glycine betaine (N,N,N-trimethylammonioacetate) - in which the ammonium nitrogen carries three methyl substituents." [] +subset: 3_STAR +synonym: "amino acid betaines" RELATED [ChEBI] +synonym: "amino-acid betaines" RELATED [ChEBI] +synonym: "betaines" RELATED [ChEBI] +is_a: CHEBI:35284 ! ammonium betaine + +[Term] +id: CHEBI:22868 +name: bile salt +namespace: chebi_ontology +def: "A sodium salt of the conjugate of any bile acid with either glycine or taurine." [] +subset: 3_STAR +synonym: "Bile acid" RELATED [KEGG_COMPOUND] +synonym: "bile salts" RELATED [ChEBI] +xref: KEGG:C01558 +is_a: CHEBI:36078 ! cholanoid +is_a: CHEBI:38700 ! organic sodium salt + +[Term] +id: CHEBI:22918 +name: branched-chain amino acid +namespace: chebi_ontology +def: "Any amino acid in which the parent hydrocarbon chain has one or more alkyl substituents" [] +subset: 3_STAR +synonym: "branched chain amino acids" RELATED [ChEBI] +is_a: CHEBI:33709 ! amino acid +relationship: is_conjugate_acid_of CHEBI:63471 ! branched-chain amino-acid anion + +[Term] +id: CHEBI:22925 +name: bromide salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "bromide salts" RELATED [ChEBI] +synonym: "bromides" RELATED [ChEBI] +is_a: CHEBI:22928 ! bromine molecular entity +is_a: CHEBI:33958 ! halide salt +relationship: has_part CHEBI:15858 ! bromide + +[Term] +id: CHEBI:22927 +name: bromine atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "35Br" RELATED [IUPAC] +synonym: "78.918" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "79.90400" RELATED MASS [ChEBI] +synonym: "[Br]" RELATED SMILES [ChEBI] +synonym: "Br" RELATED FORMULA [ChEBI] +synonym: "Br" RELATED [ChEBI] +synonym: "Brom" RELATED [ChEBI] +synonym: "brome" RELATED [ChEBI] +synonym: "bromine" EXACT IUPAC_NAME [IUPAC] +synonym: "bromine" RELATED [ChEBI] +synonym: "bromo" RELATED [ChEBI] +synonym: "bromum" RELATED [ChEBI] +synonym: "InChI=1S/Br" RELATED InChI [ChEBI] +synonym: "WKBOTKDWSSQWDR-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: WebElements:Br +is_a: CHEBI:24473 ! halogen +relationship: has_role CHEBI:27027 ! micronutrient + +[Term] +id: CHEBI:22928 +name: bromine molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "bromine compounds" RELATED [ChEBI] +synonym: "bromine molecular entities" RELATED [ChEBI] +synonym: "bromine molecular entity" EXACT [ChEBI] +is_a: CHEBI:24471 ! halogen molecular entity +relationship: has_part CHEBI:22927 ! bromine atom + +[Term] +id: CHEBI:22950 +name: butan-4-olide +namespace: chebi_ontology +def: "Any gamma-lactone having the lactone moiety derived from 4-hydroxybutanoic acid." [] +subset: 3_STAR +synonym: "butan-4-olides" RELATED [ChEBI] +synonym: "butanolide" RELATED [ChEBI] +is_a: CHEBI:37581 ! gamma-lactone +is_a: CHEBI:47016 ! tetrahydrofuranone + +[Term] +id: CHEBI:22958 +name: butenedioic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "116.011" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "116.07216" RELATED MASS [ChEBI] +synonym: "2-butenedioic acid" RELATED [ChEBI] +synonym: "[H]C(=C([H])C(O)=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "but-2-enedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "C4H4O4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H4O4/c5-3(6)1-2-4(7)8/h1-2H,(H,5,6)(H,7,8)" RELATED InChI [ChEBI] +synonym: "VZCYOOQTPOCHFL-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:8132074 "Beilstein" +is_a: CHEBI:66873 ! C4-dicarboxylic acid +relationship: is_conjugate_acid_of CHEBI:37155 ! hydrogen butenedioate + +[Term] +id: CHEBI:22977 +name: cadmium atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "112.41100" RELATED MASS [ChEBI] +synonym: "113.903" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "48Cd" RELATED [IUPAC] +synonym: "[Cd]" RELATED SMILES [ChEBI] +synonym: "BDOSMKKIYDKNTQ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "cadmio" RELATED [ChEBI] +synonym: "cadmium" EXACT IUPAC_NAME [IUPAC] +synonym: "cadmium" RELATED [ChEBI] +synonym: "Cd" RELATED [IUPAC] +synonym: "Cd" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/Cd" RELATED InChI [ChEBI] +synonym: "Kadmium" RELATED [NIST_Chemistry_WebBook] +xref: CAS:7440-43-9 "ChemIDplus" +xref: KEGG:C01413 "ChEBI" +xref: WebElements:Cd +is_a: CHEBI:33340 ! zinc group element atom + +[Term] +id: CHEBI:22978 +name: cadmium molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "cadmium compounds" RELATED [ChEBI] +synonym: "cadmium molecular entities" RELATED [ChEBI] +is_a: CHEBI:33673 ! zinc group molecular entity +relationship: has_part CHEBI:22977 ! cadmium atom + +[Term] +id: CHEBI:22984 +name: calcium atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "20Ca" RELATED [IUPAC] +synonym: "39.963" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "40.07800" RELATED MASS [ChEBI] +synonym: "[Ca]" RELATED SMILES [ChEBI] +synonym: "Ca" RELATED [IUPAC] +synonym: "Ca" RELATED FORMULA [ChEBI] +synonym: "calcio" RELATED [ChEBI] +synonym: "Calcium" RELATED [KEGG_COMPOUND] +synonym: "calcium" EXACT IUPAC_NAME [IUPAC] +synonym: "calcium" RELATED [ChEBI] +synonym: "InChI=1S/Ca" RELATED InChI [ChEBI] +synonym: "Kalzium" RELATED [ChEBI] +synonym: "OYPRJOBELJOOCE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7440-70-2 "ChemIDplus" +xref: DrugBank:DB01373 +xref: KEGG:C00076 "ChEBI" +xref: WebElements:Ca +is_a: CHEBI:22313 ! alkaline earth metal atom +relationship: has_role CHEBI:33937 ! macronutrient + +[Term] +id: CHEBI:22985 +name: calcium molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "calcium compounds" RELATED [ChEBI] +synonym: "calcium molecular entities" RELATED [ChEBI] +synonym: "calcium molecular entity" EXACT [ChEBI] +is_a: CHEBI:33299 ! alkaline earth molecular entity +relationship: has_part CHEBI:22984 ! calcium atom + +[Term] +id: CHEBI:23003 +name: carbamate ester +namespace: chebi_ontology +def: "Any ester of carbamic acid or its N-substituted derivatives." [] +subset: 3_STAR +synonym: "carbamate esters" RELATED [ChEBI] +synonym: "carbamates" RELATED [ChEBI] +xref: Wikipedia:Carbamate +is_a: CHEBI:33308 ! carboxylic ester +relationship: has_functional_parent CHEBI:28616 ! carbamic acid + +[Term] +id: CHEBI:23004 +name: carbamoyl group +namespace: chebi_ontology +def: "The univalent carboacyl group formed by loss of -OH from the carboxy group of carbamic acid." [] +subset: 3_STAR +synonym: "-C(O)NH2" RELATED [ChEBI] +synonym: "-CONH2" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "44.014" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "44.03272" RELATED MASS [ChEBI] +synonym: "aminocarbonyl" RELATED [IUPAC] +synonym: "carbamoyl" EXACT IUPAC_NAME [IUPAC] +synonym: "carbamyl" RELATED [ChEBI] +synonym: "carbamyl group" RELATED [ChEBI] +synonym: "carboxamide" RELATED [IUPAC] +synonym: "CH2NO" RELATED FORMULA [ChEBI] +xref: PMID:24168430 "Europe PMC" +is_a: CHEBI:27207 ! univalent carboacyl group +relationship: is_substituent_group_from CHEBI:28616 ! carbamic acid + +[Term] +id: CHEBI:23007 +name: carbohydrate-containing antibiotic +namespace: chebi_ontology +def: "Any carbohydrate derivative that exhibits antibiotic activity." [] +subset: 3_STAR +is_a: CHEBI:63299 ! carbohydrate derivative +relationship: has_role CHEBI:33281 ! antimicrobial agent + +[Term] +id: CHEBI:23014 +name: carbon oxide +namespace: chebi_ontology +subset: 3_STAR +synonym: "carbon oxides" RELATED [ChEBI] +synonym: "oxides of carbon" RELATED [ChEBI] +is_a: CHEBI:25701 ! organic oxide +is_a: CHEBI:36963 ! organooxygen compound + +[Term] +id: CHEBI:23018 +name: EC 4.2.1.1 (carbonic anhydrase) inhibitor +namespace: chebi_ontology +def: "An EC 4.2.1.* (hydro-lyases) inhibitor that interferes with the action of carbonic anhydrase (EC 4.2.1.1). Such compounds reduce the secretion of H(+) ions by the proximal kidney tubule." [] +subset: 3_STAR +synonym: "anhydrase inhibitor" RELATED [ChEBI] +synonym: "anhydrase inhibitors" RELATED [ChEBI] +synonym: "carbonate anhydrase inhibitor" RELATED [ChEBI] +synonym: "carbonate anhydrase inhibitors" RELATED [ChEBI] +synonym: "carbonate dehydratase inhibitor" RELATED [ChEBI] +synonym: "carbonate dehydratase inhibitors" RELATED [ChEBI] +synonym: "carbonate hydro-lyase (carbon-dioxide-forming) inhibitor" RELATED [ChEBI] +synonym: "carbonate hydro-lyase (carbon-dioxide-forming) inhibitors" RELATED [ChEBI] +synonym: "carbonate hydro-lyase inhibitor" RELATED [ChEBI] +synonym: "carbonate hydro-lyase inhibitors" RELATED [ChEBI] +synonym: "carbonic acid anhydrase inhibitor" RELATED [ChEBI] +synonym: "carbonic acid anhydrase inhibitors" RELATED [ChEBI] +synonym: "carbonic anhydrase (EC 4.2.1.1) inhibitor" RELATED [ChEBI] +synonym: "carbonic anhydrase (EC 4.2.1.1) inhibitors" RELATED [ChEBI] +synonym: "carbonic anhydrase A inhibitor" RELATED [ChEBI] +synonym: "carbonic anhydrase A inhibitors" RELATED [ChEBI] +synonym: "carbonic anhydrase inhibitor" RELATED [ChEBI] +synonym: "carbonic anhydrase inhibitors" RELATED [ChEBI] +synonym: "carboxyanhydrase inhibitor" RELATED [ChEBI] +synonym: "carboxyanhydrase inhibitors" RELATED [ChEBI] +synonym: "EC 4.2.1.1 (carbonic anhydrase) inhibitors" RELATED [ChEBI] +synonym: "EC 4.2.1.1 inhibitor" RELATED [ChEBI] +synonym: "EC 4.2.1.1 inhibitors" RELATED [ChEBI] +xref: Wikipedia:Carbonic_anhydrase_inhibitor +is_a: CHEBI:76907 ! EC 4.2.1.* (hydro-lyases) inhibitor + +[Term] +id: CHEBI:23019 +name: carbonyl group +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "27.995" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "28.01010" RELATED MASS [ChEBI] +synonym: ">C=O" RELATED [IUPAC] +synonym: "carbonyl" EXACT IUPAC_NAME [IUPAC] +synonym: "carbonyl group" EXACT [ChEBI] +synonym: "carbonyl group" EXACT [UniProt] +synonym: "CO" RELATED FORMULA [ChEBI] +is_a: CHEBI:51422 ! organodiyl group + +[Term] +id: CHEBI:23066 +name: cephalosporin +namespace: chebi_ontology +alt_id: CHEBI:3538 +def: "A class of beta-lactam antibiotics differing from the penicillins in having a 6-membered, rather than a 5-membered, side ring. Although cephalosporins are among the most commonly used antibiotics in the treatment of routine infections, and their use is increasing over time, they can cause a range of hypersensitivity reactions, from mild, delayed-onset cutaneous reactions to life-threatening anaphylaxis in patients with immunoglobulin E (IgE)-mediated allergy." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "182.999" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "183.18500" RELATED MASS [ChEBI] +synonym: "[H][C@]12SCC([*])=C(N1C(=O)[C@H]2[*])C(O)=O" RELATED SMILES [ChEBI] +synonym: "C7H5NO3SR2" RELATED FORMULA [ChEBI] +synonym: "cephalosphorin" RELATED [ChEBI] +synonym: "cephalosphorins" RELATED [ChEBI] +synonym: "Cephalosporin" EXACT [KEGG_COMPOUND] +synonym: "cephalosporins" RELATED [ChEBI] +xref: KEGG:C00875 +xref: PMID:10069359 "Europe PMC" +xref: PMID:11936371 "Europe PMC" +xref: PMID:12833570 "Europe PMC" +xref: PMID:24269048 "Europe PMC" +xref: PMID:3320614 "Europe PMC" +xref: PMID:6762896 "Europe PMC" +xref: PMID:8426246 "Europe PMC" +xref: Wikipedia:Cephalosporin +is_a: CHEBI:38311 ! cephem +relationship: has_role CHEBI:88188 ! drug allergen + +[Term] +id: CHEBI:23101 +name: N,N'-diacetylchitobioses +namespace: chebi_ontology +def: "Any of the chitobioses acetylated on both amino nitrogens." [] +subset: 3_STAR +synonym: "C16H28N2O11" RELATED FORMULA [ChEBI] +is_a: CHEBI:22480 ! amino disaccharide +relationship: has_functional_parent CHEBI:50674 ! chitobioses + +[Term] +id: CHEBI:23114 +name: chloride salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "chloride salts" RELATED [ChEBI] +synonym: "chlorides" RELATED [ChEBI] +is_a: CHEBI:23117 ! chlorine molecular entity +is_a: CHEBI:33958 ! halide salt +relationship: has_part CHEBI:17996 ! chloride + +[Term] +id: CHEBI:23116 +name: chlorine atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "17Cl" RELATED [IUPAC] +synonym: "34.969" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "35.45270" RELATED MASS [ChEBI] +synonym: "[Cl]" RELATED SMILES [ChEBI] +synonym: "Chlor" RELATED [ChEBI] +synonym: "chlore" RELATED [ChEBI] +synonym: "chlorine" EXACT IUPAC_NAME [IUPAC] +synonym: "chlorine" RELATED [ChEBI] +synonym: "chlorum" RELATED [ChEBI] +synonym: "Cl" RELATED [IUPAC] +synonym: "Cl" RELATED FORMULA [ChEBI] +synonym: "cloro" RELATED [ChEBI] +synonym: "InChI=1S/Cl" RELATED InChI [ChEBI] +synonym: "ZAMOUSCENKQFHK-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: WebElements:Cl +is_a: CHEBI:24473 ! halogen +relationship: has_role CHEBI:27027 ! micronutrient + +[Term] +id: CHEBI:23117 +name: chlorine molecular entity +namespace: chebi_ontology +def: "A halogen molecular entity containing one or more atoms of chlorine." [] +subset: 3_STAR +is_a: CHEBI:24471 ! halogen molecular entity +relationship: has_part CHEBI:23116 ! chlorine atom + +[Term] +id: CHEBI:23123 +name: chloroacetate +namespace: chebi_ontology +def: "A haloacetate(1-) resulting from the deprotonation of the carboxy group of chloroacetic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "92.974" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "93.48900" RELATED MASS [ChEBI] +synonym: "[O-]C(=O)CCl" RELATED SMILES [ChEBI] +synonym: "C2H2ClO2" RELATED FORMULA [ChEBI] +synonym: "chloroacetate" EXACT [UniProt] +synonym: "chloroacetate" EXACT IUPAC_NAME [IUPAC] +synonym: "chloroacetate anion" RELATED [ChEBI] +synonym: "chloroacetate(1-)" RELATED [ChEBI] +synonym: "Chloroacetic acid ion(1-)" RELATED [ChEBI] +synonym: "FOCAUTSVDIKZOP-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C2H3ClO2/c3-1-2(4)5/h1H2,(H,4,5)/p-1" RELATED InChI [ChEBI] +synonym: "mono-chloroacetate" RELATED [ChEBI] +synonym: "monochloroacetate anion" RELATED [ChEBI] +synonym: "monochloroacetic acid anion" RELATED [ChEBI] +xref: CAS:14526-03-5 "ChemIDplus" +xref: MetaCyc:CHLOROACETIC-ACID +xref: Reaxys:1903575 "Reaxys" +xref: UM-BBD_compID:c0007 "UM-BBD" +is_a: CHEBI:85638 ! haloacetate(1-) +relationship: is_conjugate_base_of CHEBI:27869 ! chloroacetic acid + +[Term] +id: CHEBI:23132 +name: chlorobenzenes +namespace: chebi_ontology +def: "Any organochlorine compound containing a benzene ring which is substituted by one or more chlorines." [] +subset: 3_STAR +is_a: CHEBI:22712 ! benzenes +is_a: CHEBI:36683 ! organochlorine compound + +[Term] +id: CHEBI:231935 +name: glycerol 1-phosphate(2-) +namespace: chebi_ontology +def: "An organophosphate oxoanion that is the dianion of glycerol 1-phosphate arising from deprotonation of the phosphate OH groups; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "169.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "170.05780" RELATED MASS [ChEBI] +synonym: "2,3-dihydroxypropyl phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "AWUCVROLDVIAJX-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "C3H7O6P" RELATED FORMULA [ChEBI] +synonym: "glycerol 1-phosphate" RELATED [UniProt] +synonym: "glycerol 1-phosphate dianion" RELATED [ChEBI] +synonym: "InChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/p-2" RELATED InChI [ChEBI] +synonym: "OCC(O)COP([O-])([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:1873731 "Beilstein" +xref: Gmelin:602374 "Gmelin" +xref: Reaxys:1873731 "Reaxys" +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:14336 ! glycerol 1-phosphate + +[Term] +id: CHEBI:23217 +name: cholines +namespace: chebi_ontology +def: "A quaternary ammonium ion based on the choline ion and its substituted derivatives thereof." [] +subset: 3_STAR +is_a: CHEBI:35267 ! quaternary ammonium ion + +[Term] +id: CHEBI:23232 +name: chromenes +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:38443 ! 1-benzopyran + +[Term] +id: CHEBI:23240 +name: chromophore +namespace: chebi_ontology +def: "The part (atom or group of atoms) of a molecular entity in which the electronic transition responsible for a given spectral band is approximately localized." [] +subset: 3_STAR +synonym: "chromophore" EXACT IUPAC_NAME [IUPAC] +synonym: "chromophores" RELATED [ChEBI] +xref: Wikipedia:Chromophore +is_a: CHEBI:52215 ! photochemical role + +[Term] +id: CHEBI:23336 +name: cobalt cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "Co" RELATED FORMULA [ChEBI] +synonym: "cobalt cation" EXACT [UniProt] +synonym: "cobalt cation" EXACT IUPAC_NAME [IUPAC] +synonym: "cobalt cations" RELATED [ChEBI] +is_a: CHEBI:33515 ! transition element cation + +[Term] +id: CHEBI:23354 +name: coenzyme +namespace: chebi_ontology +def: "A low-molecular-weight, non-protein organic compound participating in enzymatic reactions as dissociable acceptor or donor of chemical groups or electrons." [] +subset: 3_STAR +synonym: "coenzyme" EXACT IUPAC_NAME [IUPAC] +synonym: "coenzymes" RELATED [ChEBI] +is_a: CHEBI:23357 ! cofactor + +[Term] +id: CHEBI:23357 +name: cofactor +namespace: chebi_ontology +def: "An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group)." [] +subset: 3_STAR +synonym: "cofactor" EXACT [IUPAC] +synonym: "cofactors" EXACT IUPAC_NAME [IUPAC] +xref: Wikipedia:Cofactor_(biochemistry) +is_a: CHEBI:52206 ! biochemical role + +[Term] +id: CHEBI:23367 +name: molecular entity +namespace: chebi_ontology +def: "Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity." [] +subset: 3_STAR +synonym: "entidad molecular" RELATED [IUPAC] +synonym: "entidades moleculares" RELATED [IUPAC] +synonym: "entite moleculaire" RELATED [IUPAC] +synonym: "molecular entities" RELATED [IUPAC] +synonym: "molecular entity" EXACT IUPAC_NAME [IUPAC] +synonym: "molekulare Entitaet" RELATED [ChEBI] +is_a: CHEBI:24431 ! chemical entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl +property_value: IAO:0000412 http://purl.obolibrary.org/obo/pr.owl + +[Term] +id: CHEBI:23377 +name: copper molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "copper compounds" RELATED [ChEBI] +synonym: "copper molecular entities" RELATED [ChEBI] +synonym: "copper molecular entity" EXACT [ChEBI] +is_a: CHEBI:33745 ! copper group molecular entity +relationship: has_part CHEBI:28694 ! copper atom + +[Term] +id: CHEBI:23378 +name: copper cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "copper cation" EXACT IUPAC_NAME [IUPAC] +synonym: "copper cations" RELATED [ChEBI] +synonym: "Cu" RELATED FORMULA [ChEBI] +synonym: "Cu cation" RELATED [UniProt] +is_a: CHEBI:33515 ! transition element cation +is_a: CHEBI:37404 ! elemental copper + +[Term] +id: CHEBI:23403 +name: coumarins +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:26004 ! phenylpropanoid +is_a: CHEBI:38445 ! chromenone + +[Term] +id: CHEBI:23414 +name: copper(II) sulfate +namespace: chebi_ontology +def: "A metal sulfate compound having copper(2+) as the metal ion." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "158.881" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "159.60960" RELATED MASS [ChEBI] +synonym: "[Cu++].[O-]S([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "ARUVKPQLZAKDPS-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "copper sulfate" RELATED [ChemIDplus] +synonym: "copper(2+) sulfate" EXACT IUPAC_NAME [IUPAC] +synonym: "Copper(II) sulfate" EXACT [KEGG_COMPOUND] +synonym: "copper(II) sulfate" EXACT IUPAC_NAME [IUPAC] +synonym: "CuO4S" RELATED FORMULA [ChEBI] +synonym: "Cupric sulfate" RELATED [ChemIDplus] +synonym: "cupric sulfate anhydrous" RELATED [ChemIDplus] +synonym: "CuSO4" RELATED [IUPAC] +synonym: "InChI=1S/Cu.H2O4S/c;1-5(2,3)4/h;(H2,1,2,3,4)/q+2;/p-2" RELATED InChI [ChEBI] +xref: CAS:7758-98-7 "KEGG COMPOUND" +xref: colombos:CuSO4 +xref: Gmelin:8294 "Gmelin" +xref: KEGG:C18713 +xref: PMID:10469300 "Europe PMC" +xref: PMID:8566016 "Europe PMC" +xref: Wikipedia:Copper(II)_sulfate +is_a: CHEBI:51336 ! metal sulfate +relationship: has_part CHEBI:29036 ! copper(2+) + +[Term] +id: CHEBI:23423 +name: pseudohalogen oxoacid +namespace: chebi_ontology +subset: 1_STAR +synonym: "pseudohalogen oxoacid" EXACT [ChEBI] +synonym: "pseudohalogen oxoacids" RELATED [ChEBI] +is_a: CHEBI:24833 ! oxoacid + +[Term] +id: CHEBI:23424 +name: cyanides +namespace: chebi_ontology +def: "Salts and C-organyl derivatives of hydrogen cyanide, HC#N." [] +subset: 3_STAR +synonym: "cyanides" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:35352 ! organonitrogen compound +relationship: has_parent_hydride CHEBI:18407 ! hydrogen cyanide + +[Term] +id: CHEBI:23443 +name: cyclic amide +namespace: chebi_ontology +alt_id: CHEBI:3990 +subset: 3_STAR +synonym: "cyclic amide" EXACT [ChEBI] +synonym: "cyclic amides" RELATED [ChEBI] +is_a: CHEBI:32988 ! amide + +[Term] +id: CHEBI:23447 +name: cyclic nucleotide +namespace: chebi_ontology +subset: 3_STAR +synonym: "cyclic nucleotides" RELATED [ChEBI] +is_a: CHEBI:36976 ! nucleotide + +[Term] +id: CHEBI:23449 +name: cyclic peptide +namespace: chebi_ontology +subset: 3_STAR +synonym: "cyclic peptides" RELATED [ChEBI] +synonym: "Cyclopeptid" RELATED [ChEBI] +synonym: "peptide cyclique" RELATED [IUPAC] +synonym: "peptido ciclico" RELATED [IUPAC] +synonym: "Zyklopeptid" RELATED [ChEBI] +is_a: CHEBI:16670 ! peptide + +[Term] +id: CHEBI:23451 +name: cyclitol +namespace: chebi_ontology +def: "A polyol consisting of a cycloalkane containing at least three hydroxy groups, each attached to a different ring carbon atom." [] +subset: 3_STAR +synonym: "cyclitols" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:26191 ! polyol + +[Term] +id: CHEBI:23509 +name: cysteine derivative +namespace: chebi_ontology +def: "An amino acid derivative resulting from reaction of cysteine at the amino group, carboxy group, or thiol group, or from the replacement of any hydrogen of cysteine by a heteroatom. The definition normally excludes peptides containing cysteine residues." [] +subset: 3_STAR +synonym: "cysteine derivative" EXACT [ChEBI] +is_a: CHEBI:83821 ! amino acid derivative +relationship: has_functional_parent CHEBI:15356 ! cysteine + +[Term] +id: CHEBI:23521 +name: cytidine 5'-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "cytidine 5'-phosphates" RELATED [ChEBI] +is_a: CHEBI:23523 ! cytidine phosphate + +[Term] +id: CHEBI:23523 +name: cytidine phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "cytidine phosphates" RELATED [ChEBI] +is_a: CHEBI:23524 ! cytidines +is_a: CHEBI:25608 ! nucleoside phosphate + +[Term] +id: CHEBI:23524 +name: cytidines +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:39446 ! pyrimidine ribonucleosides +relationship: has_functional_parent CHEBI:16040 ! cytosine + +[Term] +id: CHEBI:23612 +name: deoxyadenosine phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "deoxyadenosine phosphates" RELATED [ChEBI] +is_a: CHEBI:61297 ! adenyl deoxyribonucleotide + +[Term] +id: CHEBI:23614 +name: deoxycholate +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "391.285" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "391.56406" RELATED MASS [ChEBI] +synonym: "3alpha,12alpha-dihydroxy-5beta-cholan-24-oate" EXACT IUPAC_NAME [IUPAC] +synonym: "3alpha,12alpha-dihydroxy-5beta-cholanate" RELATED [ChEBI] +synonym: "[H][C@]12CC[C@@]3([H])[C@]4([H])CC[C@]([H])([C@H](C)CCC([O-])=O)[C@@]4(C)[C@@H](O)C[C@]3([H])[C@@]1(C)CC[C@@H](O)C2" RELATED SMILES [ChEBI] +synonym: "C24H39O4" RELATED FORMULA [ChEBI] +synonym: "deoxycholate" EXACT [UniProt] +synonym: "Desoxycholat" RELATED [ChEBI] +synonym: "InChI=1S/C24H40O4/c1-14(4-9-22(27)28)18-7-8-19-17-6-5-15-12-16(25)10-11-23(15,2)20(17)13-21(26)24(18,19)3/h14-21,25-26H,4-13H2,1-3H3,(H,27,28)/p-1/t14-,15-,16-,17+,18-,19+,20+,21+,23+,24-/m1/s1" RELATED InChI [ChEBI] +synonym: "KXGVEGMKQFWNSR-LLQZFEROSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3629953 "Beilstein" +xref: Gmelin:1774558 "Gmelin" +is_a: CHEBI:131878 ! cholanic acid anion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:28834 ! deoxycholic acid + +[Term] +id: CHEBI:23622 +name: deoxygalactose +namespace: chebi_ontology +subset: 3_STAR +synonym: "deoxygalactose" EXACT [ChEBI] +synonym: "deoxygalactoses" RELATED [ChEBI] +is_a: CHEBI:23628 ! deoxyhexose + +[Term] +id: CHEBI:23628 +name: deoxyhexose +namespace: chebi_ontology +def: "Any C6 deoxy sugar having at least one hydroxy group replaced by hydrogen." [] +subset: 3_STAR +synonym: "deoxyhexose" EXACT [ChEBI] +synonym: "deoxyhexoses" RELATED [ChEBI] +is_a: CHEBI:23639 ! deoxy sugar +is_a: CHEBI:33917 ! aldohexose + +[Term] +id: CHEBI:23634 +name: deoxyaldopentose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "deoxyaldopentose phosphates" RELATED [ChEBI] +synonym: "deoxypentose phosphate" RELATED [ChEBI] +is_a: CHEBI:25900 ! aldopentose phosphate + +[Term] +id: CHEBI:23636 +name: deoxyribonucleoside +namespace: chebi_ontology +subset: 3_STAR +synonym: "deoxyribonucleosides" RELATED [ChEBI] +is_a: CHEBI:33838 ! nucleoside + +[Term] +id: CHEBI:23639 +name: deoxy sugar +namespace: chebi_ontology +def: "Any sugar having a hydroxy group replaced with a hydrogen atom." [] +subset: 3_STAR +synonym: "deoxy sugars" RELATED [ChEBI] +synonym: "deoxysugar" RELATED [ChEBI] +synonym: "deoxysugars" RELATED [ChEBI] +is_a: CHEBI:16646 ! carbohydrate + +[Term] +id: CHEBI:23652 +name: dextrins +namespace: chebi_ontology +def: "Glucans produced by the hydrolysis of starch or glycogen. They are mixtures of polymers of D-glucose units linked by alpha(1->4) or alpha(1->6) glycosidic bonds." [] +subset: 3_STAR +is_a: CHEBI:37163 ! glucan + +[Term] +id: CHEBI:23666 +name: diamine +namespace: chebi_ontology +def: "Any polyamine that contains two amino groups." [] +subset: 3_STAR +synonym: "diamines" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:88061 ! polyamine + +[Term] +id: CHEBI:23671 +name: 2,6-diaminopimelate(2-) +namespace: chebi_ontology +def: "A dicarboxylic acid dianion that is the conjugate base of 2,6-diaminopimelic acid." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "188.080" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "188.18126" RELATED MASS [ChEBI] +synonym: "2,6-diaminoheptanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "C7H12N2O4" RELATED FORMULA [ChEBI] +synonym: "diaminoheptanedioate" RELATED [ChEBI] +synonym: "diaminopimelate" RELATED [ChEBI] +synonym: "GMKMEZVLHJARHF-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C7H14N2O4/c8-4(6(10)11)2-1-3-5(9)7(12)13/h4-5H,1-3,8-9H2,(H,10,11)(H,12,13)/p-2" RELATED InChI [ChEBI] +synonym: "NC(CCCC(N)C([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +is_a: CHEBI:28965 ! dicarboxylic acid dianion +relationship: has_functional_parent CHEBI:36165 ! pimelate(2-) +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_base_of CHEBI:23673 ! 2,6-diaminopimelic acid + +[Term] +id: CHEBI:23673 +name: 2,6-diaminopimelic acid +namespace: chebi_ontology +def: "The amino dicarboxylic acid that is heptanedioic acid with amino aubstituents at C-2 and C-6." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "190.095" RELATED MONOISOTOPIC_MASS [ChemIDplus] +synonym: "190.19714" RELATED MASS [ChEBI] +synonym: "2,6-diaminoheptanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "alpha,epsilon-diaminopimelic acid" RELATED [ChEBI] +synonym: "C7H14N2O4" RELATED FORMULA [ChemIDplus] +synonym: "Diaminopimelic acid" RELATED [ChemIDplus] +synonym: "Dpm" RELATED [ChEBI] +synonym: "GMKMEZVLHJARHF-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C7H14N2O4/c8-4(6(10)11)2-1-3-5(9)7(12)13/h4-5H,1-3,8-9H2,(H,10,11)(H,12,13)" RELATED InChI [ChEBI] +synonym: "NC(CCCC(N)C(O)=O)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:1787719 "Beilstein" +xref: CAS:583-93-7 "ChemIDplus" +xref: DrugBank:DB03590 +xref: PMID:10930630 "Europe PMC" +xref: PMID:13984704 "Europe PMC" +xref: PMID:23913026 "Europe PMC" +xref: Reaxys:1787719 "Reaxys" +is_a: CHEBI:36164 ! amino dicarboxylic acid +relationship: has_functional_parent CHEBI:30531 ! pimelic acid +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:23671 ! 2,6-diaminopimelate(2-) + +[Term] +id: CHEBI:23677 +name: diazole +namespace: chebi_ontology +def: "An azole that is either one of a pair of heterocyclic organic compounds comprising three carbon atoms and two nitrogen atoms arranged in a ring." [] +subset: 3_STAR +synonym: "diazoles" RELATED [ChEBI] +is_a: CHEBI:68452 ! azole + +[Term] +id: CHEBI:23690 +name: dicarboxylic acid amide +namespace: chebi_ontology +subset: 3_STAR +synonym: "dicarboxylic acid amides" RELATED [ChEBI] +is_a: CHEBI:37622 ! carboxamide + +[Term] +id: CHEBI:23765 +name: quinolone +namespace: chebi_ontology +subset: 3_STAR +synonym: "quinolones" RELATED [ChEBI] +is_a: CHEBI:26513 ! quinolines + +[Term] +id: CHEBI:23775 +name: dihydroxy-5beta-cholanic acid +namespace: chebi_ontology +def: "A hydroxy-5beta-cholanic acid carrying two hydroxy groups at unspecified positions." [] +subset: 3_STAR +synonym: "C24H40O4" RELATED FORMULA [ChEBI] +synonym: "dihydroxy-5beta-cholanic acids" RELATED [ChEBI] +is_a: CHEBI:24663 ! hydroxy-5beta-cholanic acid +is_a: CHEBI:85184 ! dihydroxycholanic acid + +[Term] +id: CHEBI:23778 +name: dihydroxybenzoic acid +namespace: chebi_ontology +def: "Any member of the class of hydroxybenzoic acids carrying two phenolic hydroxy groups on the benzene ring and its derivatives." [] +subset: 3_STAR +synonym: "dihydroxybenzoic acids" RELATED [ChEBI] +is_a: CHEBI:24676 ! hydroxybenzoic acid +relationship: is_conjugate_acid_of CHEBI:36084 ! dihydroxybenzoate + +[Term] +id: CHEBI:237958 +name: (\{[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate +namespace: chebi_ontology +subset: 2_STAR +is_a: CHEBI:37045 ! purine ribonucleoside 5'-triphosphate +is_a: CHEBI:37096 ! adenosine 5'-phosphate +relationship: has_role CHEBI:50733 ! nutraceutical +relationship: is_conjugate_acid_of CHEBI:57299 ! ATP(3-) + +[Term] +id: CHEBI:23824 +name: diol +namespace: chebi_ontology +def: "A compound that contains two hydroxy groups, generally assumed to be, but not necessarily, alcoholic. Aliphatic diols are also called glycols." [] +subset: 3_STAR +synonym: "diols" EXACT IUPAC_NAME [IUPAC] +xref: Wikipedia:Diol +is_a: CHEBI:26191 ! polyol + +[Term] +id: CHEBI:23843 +name: disaccharide phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "disaccharide phosphates" RELATED [ChEBI] +is_a: CHEBI:26816 ! carbohydrate phosphate +is_a: CHEBI:63353 ! disaccharide derivative + +[Term] +id: CHEBI:23888 +name: drug +namespace: chebi_ontology +def: "Any substance which when absorbed into a living organism may modify one or more of its functions. The term is generally accepted for a substance taken for a therapeutic purpose, but is also commonly used for abused substances." [] +subset: 3_STAR +synonym: "drugs" RELATED [ChEBI] +synonym: "medicine" RELATED [ChEBI] +is_a: CHEBI:52217 ! pharmaceutical + +[Term] +id: CHEBI:23905 +name: monoatomic anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "monoatomic anions" RELATED [ChEBI] +is_a: CHEBI:22563 ! anion +is_a: CHEBI:24867 ! monoatomic ion + +[Term] +id: CHEBI:23906 +name: monoatomic cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "monoatomic cations" RELATED [ChEBI] +is_a: CHEBI:24867 ! monoatomic ion +is_a: CHEBI:36916 ! cation + +[Term] +id: CHEBI:23924 +name: enzyme inhibitor +namespace: chebi_ontology +def: "A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction." [] +subset: 3_STAR +synonym: "enzyme inhibitor" EXACT IUPAC_NAME [IUPAC] +synonym: "enzyme inhibitors" RELATED [ChEBI] +synonym: "inhibidor enzimatico" RELATED [ChEBI] +synonym: "inhibidores enzimaticos" RELATED [ChEBI] +synonym: "inhibiteur enzymatique" RELATED [ChEBI] +synonym: "inhibiteurs enzymatiques" RELATED [ChEBI] +is_a: CHEBI:35222 ! inhibitor +is_a: CHEBI:52206 ! biochemical role + +[Term] +id: CHEBI:23953 +name: erythromycins +namespace: chebi_ontology +subset: 1_STAR +synonym: "erythromycins" EXACT [ChEBI] +is_a: CHEBI:25105 ! macrolide antibiotic +relationship: has_functional_parent CHEBI:23955 ! erythronolide + +[Term] +id: CHEBI:23955 +name: erythronolide +namespace: chebi_ontology +subset: 1_STAR +synonym: "erythronolides" RELATED [ChEBI] +is_a: CHEBI:25106 ! macrolide +relationship: has_role CHEBI:25212 ! metabolite + +[Term] +id: CHEBI:23965 +name: estradiol +namespace: chebi_ontology +alt_id: CHEBI:42364 +def: "A 3-hydroxy steroid that is estra-1,3,5(10)-triene substituted by hydroxy groups at positions 3 and 17." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "272.178" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "272.38196" RELATED MASS [ChEBI] +synonym: "[H][C@]12CC[C@]3(C)C(O)CC[C@@]3([H])[C@]1([H])CCc1cc(O)ccc21" RELATED SMILES [ChEBI] +synonym: "C18H24O2" RELATED FORMULA [ChEBI] +synonym: "estra-1,3,5(10)-triene-3,17-diol" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C18H24O2/c1-18-9-8-14-13-5-3-12(19)10-11(13)2-4-15(14)16(18)6-7-17(18)20/h3,5,10,14-17,19-20H,2,4,6-9H2,1H3/t14-,15-,16+,17?,18+/m1/s1" RELATED InChI [ChEBI] +synonym: "oestradiol" RELATED [ChEBI] +synonym: "VOXZDWNPVJITMN-WKUFJEKOSA-N" RELATED InChIKey [ChEBI] +xref: colombos:ESTRADIOL +xref: PMID:10696569 "Europe PMC" +xref: PMID:24084694 "Europe PMC" +xref: Wikipedia:Estradiol +is_a: CHEBI:36834 ! 3-hydroxy steroid +is_a: CHEBI:36838 ! 17-hydroxy steroid +relationship: has_parent_hydride CHEBI:23966 ! estrane +relationship: has_role CHEBI:50114 ! estrogen +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:23966 +name: estrane +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "246.235" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "246.43080" RELATED MASS [ChEBI] +synonym: "[H][C@]12CCCCC1CC[C@]1([H])[C@]2([H])CC[C@]2(C)CCC[C@@]12[H]" RELATED SMILES [ChEBI] +synonym: "C18H30" RELATED FORMULA [ChEBI] +synonym: "estrane" EXACT IUPAC_NAME [IUPAC] +synonym: "GRXPVLPQNMUNNX-MHJRRCNVSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C18H30/c1-18-11-4-7-17(18)16-9-8-13-5-2-3-6-14(13)15(16)10-12-18/h13-17H,2-12H2,1H3/t13?,14-,15+,16+,17-,18-/m0/s1" RELATED InChI [ChEBI] +synonym: "Oestran" RELATED [ChEBI] +synonym: "oestrane" RELATED [JCBN] +xref: Beilstein:3125721 "Beilstein" +xref: LIPID_MAPS_instance:LMST02010000 "LIPID MAPS" +is_a: CHEBI:35508 ! steroid fundamental parent + +[Term] +id: CHEBI:23982 +name: ethanols +namespace: chebi_ontology +def: "Any primary alcohol based on an ethanol skeleton." [] +subset: 3_STAR +is_a: CHEBI:15734 ! primary alcohol + +[Term] +id: CHEBI:24028 +name: iron(3+) chelator +namespace: chebi_ontology +subset: 1_STAR +synonym: "ferric chelator" RELATED [ChEBI] +synonym: "ferric chelators" RELATED [ChEBI] +synonym: "iron(III) chelator" RELATED [ChEBI] +is_a: CHEBI:38157 ! iron chelator + +[Term] +id: CHEBI:24043 +name: flavones +namespace: chebi_ontology +def: "A member of the class of flavonoid with a 2-aryl-1-benzopyran-4-one (2-arylchromen-4-one) skeleton and its substituted derivatives." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-aryl-1-benzopyran-4-one" RELATED [ChEBI] +synonym: "2-aryl-1-benzopyran-4-ones" RELATED [ChEBI] +synonym: "2-arylchromen-4-one" RELATED [ChEBI] +synonym: "2-arylchromen-4-ones" RELATED [ChEBI] +synonym: "[*]c1c([*])c([*])c(c([*])c1[*])-c1oc2c([*])c([*])c([*])c([*])c2c(=O)c1[*]" RELATED SMILES [ChEBI] +synonym: "a flavone" RELATED [UniProt] +xref: MetaCyc:Flavones +xref: Wikipedia:Flavone +is_a: CHEBI:47916 ! flavonoid + +[Term] +id: CHEBI:24061 +name: fluorine atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "18.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "18.99840" RELATED MASS [ChEBI] +synonym: "9F" RELATED [IUPAC] +synonym: "[F]" RELATED SMILES [ChEBI] +synonym: "F" RELATED [IUPAC] +synonym: "F" RELATED FORMULA [ChEBI] +synonym: "Fluor" RELATED [ChemIDplus] +synonym: "fluor" RELATED [ChEBI] +synonym: "fluorine" EXACT IUPAC_NAME [IUPAC] +synonym: "fluorine" RELATED [ChEBI] +synonym: "fluorum" RELATED [ChEBI] +synonym: "InChI=1S/F" RELATED InChI [ChEBI] +synonym: "YCKRFDGAMUMZLT-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7782-41-4 "ChemIDplus" +xref: WebElements:F +is_a: CHEBI:24473 ! halogen +relationship: has_role CHEBI:27027 ! micronutrient + +[Term] +id: CHEBI:24062 +name: fluorine molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "fluorine compounds" RELATED [ChEBI] +synonym: "fluorine molecular entities" RELATED [ChEBI] +synonym: "fluorine molecular entity" EXACT [ChEBI] +is_a: CHEBI:24471 ! halogen molecular entity +relationship: has_part CHEBI:24061 ! fluorine atom + +[Term] +id: CHEBI:24112 +name: fructuronate +namespace: chebi_ontology +subset: 3_STAR +synonym: "C6H9O7" RELATED FORMULA [ChEBI] +synonym: "fructuronate" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33901 ! fructuronates +relationship: is_conjugate_base_of CHEBI:24113 ! fructuronic acid + +[Term] +id: CHEBI:24113 +name: fructuronic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "C6H10O7" RELATED FORMULA [ChEBI] +synonym: "fructuronic acid" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33883 ! fructuronic acids +relationship: is_conjugate_acid_of CHEBI:24112 ! fructuronate + +[Term] +id: CHEBI:24127 +name: fungicide +namespace: chebi_ontology +def: "A substance used to destroy fungal pests." [] +subset: 3_STAR +synonym: "fungicides" RELATED [ChEBI] +is_a: CHEBI:25944 ! pesticide +is_a: CHEBI:35718 ! antifungal agent + +[Term] +id: CHEBI:24129 +name: furans +namespace: chebi_ontology +def: "Compounds containing at least one furan ring." [] +subset: 3_STAR +synonym: "oxacyclopenta-2,4-dienes" RELATED [ChEBI] +is_a: CHEBI:25693 ! organic heteromonocyclic compound +is_a: CHEBI:38104 ! oxacycle + +[Term] +id: CHEBI:24154 +name: galactosamine phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "galactosamine phosphate" EXACT [ChEBI] +synonym: "galactosamine phosphates" RELATED [ChEBI] +is_a: CHEBI:24584 ! hexosamine phosphate + +[Term] +id: CHEBI:24156 +name: galactosamine +namespace: chebi_ontology +subset: 3_STAR +synonym: "galactosamines" RELATED [ChEBI] +is_a: CHEBI:24586 ! hexosamine + +[Term] +id: CHEBI:24175 +name: galacturonate +namespace: chebi_ontology +subset: 3_STAR +synonym: "C6H9O7" RELATED FORMULA [ChEBI] +is_a: CHEBI:33812 ! galacturonates +relationship: is_conjugate_base_of CHEBI:33830 ! galacturonic acid + +[Term] +id: CHEBI:24261 +name: glucocorticoid +namespace: chebi_ontology +def: "Glucocorticoids are a class of steroid hormones that regulate a variety of physiological processes, in particular control of the concentration of glucose in blood." [] +subset: 3_STAR +synonym: "glucocorticoids" RELATED [ChEBI] +is_a: CHEBI:36699 ! corticosteroid hormone + +[Term] +id: CHEBI:24265 +name: gluconate +namespace: chebi_ontology +subset: 3_STAR +synonym: "C6H11O7" RELATED FORMULA [ChEBI] +synonym: "gluconate" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33804 ! gluconates +relationship: is_conjugate_base_of CHEBI:24266 ! gluconic acid + +[Term] +id: CHEBI:24266 +name: gluconic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "C6H11O7" RELATED FORMULA [ChEBI] +xref: DrugBank:DB04304 +is_a: CHEBI:33752 ! hexonic acid +relationship: is_conjugate_acid_of CHEBI:24265 ! gluconate + +[Term] +id: CHEBI:24268 +name: glucooligosaccharide +namespace: chebi_ontology +def: "An oligosaccharide comprised of glucose residues." [] +subset: 3_STAR +synonym: "glucooligosaccharides" RELATED [ChEBI] +is_a: CHEBI:50699 ! oligosaccharide + +[Term] +id: CHEBI:24269 +name: glucosamine phosphate +namespace: chebi_ontology +def: "A hexosamine phosphate having glucosamine as the amino sugar component." [] +subset: 3_STAR +synonym: "glucosamine phosphate" EXACT [ChEBI] +synonym: "glucosamine phosphates" RELATED [ChEBI] +is_a: CHEBI:24584 ! hexosamine phosphate +relationship: has_functional_parent CHEBI:5417 ! glucosamine + +[Term] +id: CHEBI:2427 +name: Acid amide +namespace: chebi_ontology +subset: 2_STAR +synonym: "0" RELATED CHARGE [KEGG_COMPOUND] +synonym: "43.006" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "43.025" RELATED MASS [KEGG_COMPOUND] +synonym: "[*]NC([*])=O" RELATED SMILES [ChEBI] +synonym: "Acid amide" EXACT [KEGG_COMPOUND] +synonym: "CHNOR2" RELATED FORMULA [KEGG_COMPOUND] +xref: colombos:MEDIUM.ACIDS_AMIDES\:+1 +xref: KEGG:C01658 +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:24271 +name: glucosamines +namespace: chebi_ontology +def: "Any hexosamine that is glucose in which at least one of the hydroxy groups has been replaced by an amino group." [] +subset: 3_STAR +is_a: CHEBI:24586 ! hexosamine + +[Term] +id: CHEBI:24297 +name: glucuronate +namespace: chebi_ontology +subset: 3_STAR +synonym: "C6H9O7" RELATED FORMULA [ChEBI] +synonym: "gluconuronate" RELATED [ChEBI] +synonym: "glucuronate" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33903 ! glucuronates +relationship: is_conjugate_base_of CHEBI:24298 ! glucuronic acid + +[Term] +id: CHEBI:24298 +name: glucuronic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "C6H10O7" RELATED FORMULA [ChEBI] +synonym: "glucuronic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "Glucuronsaeure" RELATED [ChEBI] +synonym: "Glukuronsaeure" RELATED [ChEBI] +xref: PMID:24617284 "Europe PMC" +xref: PMID:24879518 "Europe PMC" +is_a: CHEBI:33886 ! glucuronic acids +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:24297 ! glucuronate + +[Term] +id: CHEBI:24318 +name: glutamine family amino acid +namespace: chebi_ontology +def: "An L-alpha-amino acid which is L-glutamic acid or any of the essential amino acids biosynthesised from it (glutamine, proline and arginine). A closed class." [] +subset: 3_STAR +synonym: "glutamine family amino acids" RELATED [ChEBI] +xref: PMID:20716061 "Europe PMC" +is_a: CHEBI:15705 ! L-alpha-amino acid +is_a: CHEBI:83813 ! proteinogenic amino acid + +[Term] +id: CHEBI:24337 +name: glutathione derivative +namespace: chebi_ontology +def: "Any organonitrogen compound derived from the Glu-Cys-Gly tripeptide glutathione." [] +subset: 3_STAR +synonym: "glutathione derivatives" RELATED [ChEBI] +is_a: CHEBI:33261 ! organosulfur compound +is_a: CHEBI:35352 ! organonitrogen compound +is_a: CHEBI:36963 ! organooxygen compound +relationship: has_functional_parent CHEBI:16856 ! glutathione + +[Term] +id: CHEBI:24347 +name: glycerates +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:33763 ! trionate + +[Term] +id: CHEBI:24373 +name: glycine derivative +namespace: chebi_ontology +def: "A proteinogenic amino acid derivative resulting from reaction of glycine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom." [] +subset: 3_STAR +is_a: CHEBI:83811 ! proteinogenic amino acid derivative +relationship: has_functional_parent CHEBI:15428 ! glycine + +[Term] +id: CHEBI:24400 +name: glycoside +namespace: chebi_ontology +def: "A glycosyl compound resulting from the attachment of a glycosyl group to a non-acyl group RO-, RS-, RSe-, etc. The bond between the glycosyl group and the non-acyl group is called a glycosidic bond. By extension, the terms N-glycosides and C-glycosides are used as class names for glycosylamines and for compounds having a glycosyl group attached to a hydrocarbyl group respectively. These terms are misnomers and should not be used. The preferred terms are glycosylamines and C-glycosyl compounds, respectively." [] +subset: 3_STAR +synonym: "glycosides" EXACT IUPAC_NAME [IUPAC] +synonym: "glycosides" RELATED [ChEBI] +synonym: "O-glycoside" RELATED [ChEBI] +synonym: "O-glycosides" RELATED [ChEBI] +is_a: CHEBI:63161 ! glycosyl compound + +[Term] +id: CHEBI:24405 +name: glycosylglucose +namespace: chebi_ontology +subset: 3_STAR +synonym: "glycosylglucoses" RELATED [ChEBI] +is_a: CHEBI:36233 ! disaccharide + +[Term] +id: CHEBI:24407 +name: glycosyl glycoside +namespace: chebi_ontology +def: "Any disaccharide in which the two monosaccharide components are connected by a glycosidic linkage between their anomeric centres." [] +subset: 3_STAR +synonym: "glycosyl glycoside" EXACT [ChEBI] +synonym: "glycosyl glycosides" RELATED [ChEBI] +is_a: CHEBI:36233 ! disaccharide + +[Term] +id: CHEBI:24431 +name: chemical entity +namespace: chebi_ontology +def: "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." [] +subset: 3_STAR +synonym: "chemical entity" EXACT [UniProt] +is_a: BFO:0000030 ! object +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:24432 +name: biological role +namespace: chebi_ontology +def: "A role played by the molecular entity or part thereof within a biological context." [] +subset: 3_STAR +synonym: "biological function" RELATED [ChEBI] +is_a: CHEBI:50906 ! role + +[Term] +id: CHEBI:24433 +name: group +namespace: chebi_ontology +def: "A defined linked collection of atoms or a single atom within a molecular entity." [] +subset: 3_STAR +synonym: "group" EXACT IUPAC_NAME [IUPAC] +synonym: "groupe" RELATED [IUPAC] +synonym: "grupo" RELATED [IUPAC] +synonym: "grupos" RELATED [IUPAC] +synonym: "Gruppe" RELATED [ChEBI] +synonym: "Rest" RELATED [ChEBI] +is_a: CHEBI:24431 ! chemical entity +relationship: has_part CHEBI:33250 ! atom + +[Term] +id: CHEBI:24436 +name: guanidines +namespace: chebi_ontology +def: "Any organonitrogen compound containing a carbamimidamido (guanidino) group. Guanidines have the general structure (R(1)R(2)N)(R(3)R(4)N)C=N-R(5) and are related structurally to amidines and ureas." [] +subset: 3_STAR +is_a: CHEBI:35352 ! organonitrogen compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:24455 +name: guanosine phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "guanosine phosphates" RELATED [ChEBI] +is_a: CHEBI:24458 ! guanosines +is_a: CHEBI:61295 ! guanyl ribonucleotide + +[Term] +id: CHEBI:24458 +name: guanosines +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:26399 ! purine ribonucleoside +relationship: has_functional_parent CHEBI:16235 ! guanine + +[Term] +id: CHEBI:24471 +name: halogen molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "halogen compounds" RELATED [ChEBI] +synonym: "halogen molecular entities" RELATED [ChEBI] +synonym: "halogen molecular entity" EXACT [ChEBI] +is_a: CHEBI:33675 ! p-block molecular entity +relationship: has_part CHEBI:24473 ! halogen + +[Term] +id: CHEBI:24473 +name: halogen +namespace: chebi_ontology +subset: 3_STAR +synonym: "group 17 elements" RELATED [ChEBI] +synonym: "group VII elements" RELATED [ChEBI] +synonym: "halogen" EXACT IUPAC_NAME [IUPAC] +synonym: "Halogene" RELATED [ChEBI] +synonym: "halogene" RELATED [ChEBI] +synonym: "halogenes" RELATED [ChEBI] +synonym: "halogeno" RELATED [ChEBI] +synonym: "halogenos" RELATED [ChEBI] +synonym: "halogens" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:25585 ! nonmetal atom +is_a: CHEBI:33560 ! p-block element atom + +[Term] +id: CHEBI:24527 +name: herbicide +namespace: chebi_ontology +def: "A substance used to destroy plant pests." [] +subset: 3_STAR +synonym: "herbicides" RELATED [ChEBI] +synonym: "Herbizid" RELATED [ChEBI] +synonym: "Unkrautbekaempfungsmittel" RELATED [ChEBI] +synonym: "Unkrautvertilgungsmittel" RELATED [ChEBI] +synonym: "Wildkrautbekaempfungsmittel" RELATED [ChEBI] +xref: Wikipedia:Herbicide +is_a: CHEBI:25944 ! pesticide + +[Term] +id: CHEBI:24531 +name: heterocyclic antibiotic +namespace: chebi_ontology +subset: 1_STAR +synonym: "heterocyclic antibiotics" RELATED [ChEBI] +is_a: CHEBI:24532 ! organic heterocyclic compound +relationship: has_role CHEBI:33281 ! antimicrobial agent + +[Term] +id: CHEBI:24532 +name: organic heterocyclic compound +namespace: chebi_ontology +def: "A cyclic compound having as ring members atoms of carbon and at least of one other element." [] +subset: 3_STAR +synonym: "organic heterocycle" RELATED [ChEBI] +synonym: "organic heterocyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33285 ! heteroorganic entity +is_a: CHEBI:33832 ! organic cyclic compound +is_a: CHEBI:5686 ! heterocyclic compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:24533 +name: heterodetic cyclic peptide +namespace: chebi_ontology +def: "A heterodetic cyclic peptide is a peptide consisting only of amino-acid residues, but in which the linkages forming the ring are not solely peptide bonds; one or more is an isopeptide, disulfide, ester, or other bond." [] +subset: 3_STAR +synonym: "heterodetic cyclic peptide" EXACT IUPAC_NAME [IUPAC] +synonym: "heterodetic cyclic peptides" RELATED [ChEBI] +synonym: "peptide cyclique heterodetique" RELATED [IUPAC] +synonym: "peptido ciclico heterodetico" RELATED [IUPAC] +is_a: CHEBI:23449 ! cyclic peptide + +[Term] +id: CHEBI:24561 +name: hexahydroxyflavone +namespace: chebi_ontology +def: "Members of the class of hydroxyflavone that is flavone substituted by 6 hydroxy groups." [] +subset: 3_STAR +synonym: "hexahydroxyflavones" RELATED [ChEBI] +is_a: CHEBI:24698 ! hydroxyflavone + +[Term] +id: CHEBI:24576 +name: hexaric acid anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "hexarate" RELATED [ChEBI] +synonym: "hexarates" RELATED [ChEBI] +synonym: "hexaric acid anions" RELATED [ChEBI] +is_a: CHEBI:22289 ! aldaric acid anion + +[Term] +id: CHEBI:24577 +name: hexaric acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "hexaric acid" EXACT [ChEBI] +synonym: "hexaric acids" RELATED [ChEBI] +is_a: CHEBI:22290 ! aldaric acid + +[Term] +id: CHEBI:24583 +name: hexitol +namespace: chebi_ontology +subset: 3_STAR +synonym: "hexitol" EXACT [ChEBI] +synonym: "hexitols" RELATED [ChEBI] +is_a: CHEBI:17522 ! alditol + +[Term] +id: CHEBI:24584 +name: hexosamine phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "hexosamine phosphate" EXACT [ChEBI] +synonym: "hexosamine phosphates" RELATED [ChEBI] +is_a: CHEBI:22529 ! amino sugar phosphate + +[Term] +id: CHEBI:24586 +name: hexosamine +namespace: chebi_ontology +def: "Any 6-carbon amino monosaccharide with at least one alcoholic hydroxy group replaced by an amino group." [] +subset: 3_STAR +synonym: "hexosamine" EXACT [ChEBI] +synonym: "hexosamines" RELATED [ChEBI] +is_a: CHEBI:60926 ! amino monosaccharide + +[Term] +id: CHEBI:24591 +name: hexuronate +namespace: chebi_ontology +alt_id: CHEBI:60934 +def: "A uronate obtained via deprotonation of the carboxy group of any hexuronic acid." [] +subset: 3_STAR +synonym: "hexuronate" EXACT [ChEBI] +synonym: "hexuronates" RELATED [ChEBI] +synonym: "hexuronide" RELATED [ChEBI] +synonym: "hexuronides" RELATED [ChEBI] +is_a: CHEBI:33549 ! uronate +relationship: is_conjugate_base_of CHEBI:24592 ! hexuronic acid + +[Term] +id: CHEBI:24592 +name: hexuronic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "hexuronic acid" EXACT [ChEBI] +synonym: "hexuronic acids" RELATED [ChEBI] +is_a: CHEBI:27252 ! uronic acid +relationship: is_conjugate_acid_of CHEBI:24591 ! hexuronate + +[Term] +id: CHEBI:24610 +name: homocysteines +namespace: chebi_ontology +subset: 1_STAR +synonym: "homocysteines" EXACT [ChEBI] +xref: KEGG:C05330 "ChEBI" +is_a: CHEBI:83925 ! non-proteinogenic alpha-amino acid + +[Term] +id: CHEBI:24621 +name: hormone +namespace: chebi_ontology +def: "Originally referring to an endogenous compound that is formed in specialized organ or group of cells and carried to another organ or group of cells, in the same organism, upon which it has a specific regulatory function, the term is now commonly used to include non-endogenous, semi-synthetic and fully synthetic analogues of such compounds." [] +subset: 3_STAR +synonym: "endocrine" RELATED [ChEBI] +synonym: "hormones" RELATED [ChEBI] +is_a: CHEBI:33280 ! molecular messenger +is_a: CHEBI:48705 ! agonist + +[Term] +id: CHEBI:24628 +name: imidazolidine-2,4-dione +namespace: chebi_ontology +def: "An imidazolidinone with oxo groups at position 2 and 4." [] +subset: 3_STAR +is_a: CHEBI:55370 ! imidazolidinone + +[Term] +id: CHEBI:24632 +name: hydrocarbon +namespace: chebi_ontology +def: "A compound consisting of carbon and hydrogen only." [] +subset: 3_STAR +synonym: "hidrocarburo" RELATED [IUPAC] +synonym: "hidrocarburos" RELATED [IUPAC] +synonym: "hydrocarbon" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrocarbons" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrocarbure" RELATED [IUPAC] +synonym: "Kohlenwasserstoff" RELATED [ChEBI] +synonym: "Kohlenwasserstoffe" RELATED [ChEBI] +is_a: CHEBI:33245 ! organic fundamental parent + +[Term] +id: CHEBI:24648 +name: hydroxamic acid anion +namespace: chebi_ontology +def: "An oxoanion resulting from the removal of a proton from the hydroxy group of any hydroxamic acid." [] +subset: 3_STAR +synonym: "hydroxamate" RELATED [ChEBI] +synonym: "hydroxamates" RELATED [ChEBI] +synonym: "hydroxamic acid anions" RELATED [ChEBI] +synonym: "hydroxamic anion" RELATED [ChEBI] +synonym: "hydroxamic anions" RELATED [ChEBI] +is_a: CHEBI:25696 ! organic anion +is_a: CHEBI:35406 ! oxoanion +relationship: is_conjugate_base_of CHEBI:24650 ! hydroxamic acid + +[Term] +id: CHEBI:24650 +name: hydroxamic acid +namespace: chebi_ontology +def: "A compound, RkE(=O)lNHOH, derived from an oxoacid RkE(=O)l(OH) (l =/= 0) by replacing -OH with -NHOH, and derivatives thereof. Specific examples of hydroxamic acids are preferably named as N-hydroxy amides." [] +subset: 3_STAR +synonym: "hydroxamic acids" EXACT IUPAC_NAME [IUPAC] +synonym: "hydroxamic acids" RELATED [ChEBI] +synonym: "N-hydroxy amide" RELATED [ChEBI] +synonym: "N-hydroxy amides" RELATED [ChEBI] +synonym: "N-hydroxy-amide" RELATED [ChEBI] +synonym: "N-hydroxy-amides" RELATED [ChEBI] +synonym: "N-hydroxyamide" RELATED [ChEBI] +synonym: "N-hydroxyamides" RELATED [ChEBI] +is_a: CHEBI:37622 ! carboxamide +relationship: is_conjugate_acid_of CHEBI:24648 ! hydroxamic acid anion + +[Term] +id: CHEBI:24651 +name: hydroxides +namespace: chebi_ontology +def: "Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-))." [] +subset: 3_STAR +is_a: CHEBI:25806 ! oxygen molecular entity +is_a: CHEBI:33608 ! hydrogen molecular entity +is_a: CHEBI:37577 ! heteroatomic molecular entity +relationship: has_part CHEBI:43176 ! hydroxy group +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:24663 +name: hydroxy-5beta-cholanic acid +namespace: chebi_ontology +def: "Any member of the class of 5beta-cholanic acids carrying at least one hydroxy group at unspecified position." [] +subset: 3_STAR +synonym: "hydroxy-5beta-cholanic acids" RELATED [ChEBI] +is_a: CHEBI:33822 ! organic hydroxy compound +is_a: CHEBI:36248 ! 5beta-cholanic acids +relationship: has_functional_parent CHEBI:36238 ! 5beta-cholanic acid + +[Term] +id: CHEBI:24669 +name: hydroxy carboxylic acid +namespace: chebi_ontology +def: "Any carboxylic acid with at least one hydroxy group." [] +subset: 3_STAR +synonym: "hydroxy carboxylic acids" RELATED [ChEBI] +synonym: "hydroxycarboxylic acid" RELATED [ChEBI] +synonym: "hydroxycarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:33575 ! carboxylic acid +is_a: CHEBI:33822 ! organic hydroxy compound + +[Term] +id: CHEBI:24675 +name: hydroxybenzoate +namespace: chebi_ontology +def: "Any benzoate derivative carrying a single carboxylate group and at least one hydroxy substituent." [] +subset: 3_STAR +synonym: "hydroxybenzoates" RELATED [ChEBI] +is_a: CHEBI:22718 ! benzoates +is_a: CHEBI:36059 ! hydroxy monocarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:24676 ! hydroxybenzoic acid + +[Term] +id: CHEBI:24676 +name: hydroxybenzoic acid +namespace: chebi_ontology +alt_id: CHEBI:50778 +def: "Any benzoic acid carrying one or more phenolic hydroxy groups on the benzene ring." [] +subset: 3_STAR +synonym: "C7H6O3" RELATED FORMULA [ChEBI] +synonym: "hydroxybenzoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "hydroxybenzoic acids" RELATED [ChEBI] +is_a: CHEBI:22723 ! benzoic acids +is_a: CHEBI:33853 ! phenols +relationship: has_functional_parent CHEBI:30746 ! benzoic acid +relationship: is_conjugate_acid_of CHEBI:24675 ! hydroxybenzoate + +[Term] +id: CHEBI:24698 +name: hydroxyflavone +namespace: chebi_ontology +def: "Any flavone in which one or more ring hydrogens are replaced by hydroxy groups." [] +subset: 3_STAR +synonym: "hydroxyflavones" RELATED [ChEBI] +is_a: CHEBI:24043 ! flavones +is_a: CHEBI:33822 ! organic hydroxy compound + +[Term] +id: CHEBI:24712 +name: hydroxymethyl group +namespace: chebi_ontology +subset: 3_STAR +synonym: "-CH3-OH" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "31.018" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "31.03392" RELATED MASS [ChEBI] +synonym: "CH3O" RELATED FORMULA [ChEBI] +synonym: "hydroxymethyl" EXACT IUPAC_NAME [IUPAC] +synonym: "serine side-chain" RELATED [ChEBI] +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group +relationship: is_substituent_group_from CHEBI:17790 ! methanol + +[Term] +id: CHEBI:24753 +name: hygromycin +namespace: chebi_ontology +subset: 3_STAR +synonym: "hygromycins" RELATED [ChEBI] +is_a: CHEBI:22479 ! amino cyclitol glycoside +is_a: CHEBI:22507 ! aminoglycoside antibiotic + +[Term] +id: CHEBI:24757 +name: hypochlorous acid +namespace: chebi_ontology +def: "A chlorine oxoacid with formula HOCl; a weak, unstable acid, it is the active form of chlorine in water." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "51.972" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "52.46004" RELATED MASS [ChEBI] +synonym: "[ClOH]" RELATED [IUPAC] +synonym: "Chlor(I)-saeure" RELATED [ChEBI] +synonym: "chloranol" EXACT IUPAC_NAME [IUPAC] +synonym: "ClHO" RELATED FORMULA [ChEBI] +synonym: "HClO" RELATED [IUPAC] +synonym: "HOCl" RELATED [IUPAC] +synonym: "hydroxidochlorine" EXACT IUPAC_NAME [IUPAC] +synonym: "hypochloric acid" RELATED [ChEBI] +synonym: "hypochlorige Saeure" RELATED [ChEBI] +synonym: "hypochlorous acid" EXACT IUPAC_NAME [IUPAC] +synonym: "hypochlorous acid" EXACT [UniProt] +synonym: "InChI=1S/ClHO/c1-2/h2H" RELATED InChI [ChEBI] +synonym: "OCl" RELATED SMILES [ChEBI] +synonym: "QWPPOHNGKGFGJK-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7790-92-3 "NIST Chemistry WebBook" +xref: colombos:HOCl +xref: Gmelin:688 "Gmelin" +xref: PMID:11640916 "Europe PMC" +xref: PMID:12079432 "Europe PMC" +xref: PMID:12215218 "Europe PMC" +xref: PMID:15589368 "Europe PMC" +xref: PMID:7487057 "Europe PMC" +xref: PMID:8072005 "Europe PMC" +is_a: CHEBI:26523 ! reactive oxygen species +is_a: CHEBI:33426 ! chlorine oxoacid +relationship: has_role CHEBI:38462 ! EC 3.1.1.7 (acetylcholinesterase) inhibitor +relationship: has_role CHEBI:76797 ! EC 2.5.1.18 (glutathione transferase) inhibitor +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:29222 ! hypochlorite + +[Term] +id: CHEBI:24780 +name: imidazoles +namespace: chebi_ontology +def: "A five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton." [] +subset: 3_STAR +is_a: CHEBI:23677 ! diazole + +[Term] +id: CHEBI:24782 +name: imide +namespace: chebi_ontology +subset: 3_STAR +synonym: "imide" EXACT [ChEBI] +synonym: "imides" RELATED [ChEBI] +is_a: CHEBI:33257 ! secondary amide + +[Term] +id: CHEBI:24793 +name: indoledione +namespace: chebi_ontology +subset: 3_STAR +synonym: "C8H5NO2" RELATED FORMULA [ChEBI] +is_a: CHEBI:24829 ! indolones + +[Term] +id: CHEBI:24803 +name: indole-3-acetic acids +namespace: chebi_ontology +def: "An indol-3-yl carboxylic acid in which the carboxylic acid specified is acetic acid." [] +subset: 3_STAR +is_a: CHEBI:24810 ! indol-3-yl carboxylic acid +relationship: has_functional_parent CHEBI:15366 ! acetic acid + +[Term] +id: CHEBI:24810 +name: indol-3-yl carboxylic acid +namespace: chebi_ontology +def: "Any indolyl carboxylic acid carrying an indol-3-yl or substituted indol-3-yl group." [] +subset: 3_STAR +synonym: "indol-3-yl carboxylic acids" RELATED [ChEBI] +is_a: CHEBI:46867 ! indolyl carboxylic acid + +[Term] +id: CHEBI:24828 +name: indoles +namespace: chebi_ontology +def: "Any compound containing an indole skeleton." [] +subset: 3_STAR +is_a: CHEBI:22728 ! benzopyrrole + +[Term] +id: CHEBI:24829 +name: indolones +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:24828 ! indoles + +[Term] +id: CHEBI:24833 +name: oxoacid +namespace: chebi_ontology +def: "A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons)." [] +subset: 3_STAR +synonym: "oxacids" RELATED [ChEBI] +synonym: "oxiacids" RELATED [ChEBI] +synonym: "oxo acid" RELATED [ChEBI] +synonym: "oxoacid" EXACT IUPAC_NAME [IUPAC] +synonym: "oxoacids" EXACT IUPAC_NAME [IUPAC] +synonym: "oxy-acids" RELATED [ChEBI] +synonym: "oxyacids" RELATED [ChEBI] +is_a: CHEBI:24651 ! hydroxides +relationship: has_role CHEBI:39141 ! Bronsted acid +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:24834 +name: inorganic anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "inorganic anions" RELATED [ChEBI] +is_a: CHEBI:22563 ! anion +is_a: CHEBI:36914 ! inorganic ion + +[Term] +id: CHEBI:24835 +name: inorganic molecular entity +namespace: chebi_ontology +def: "A molecular entity that contains no carbon." [] +subset: 3_STAR +synonym: "anorganische Verbindungen" RELATED [ChEBI] +synonym: "inorganic compounds" RELATED [ChEBI] +synonym: "inorganic entity" RELATED [ChEBI] +synonym: "inorganic molecular entities" RELATED [ChEBI] +synonym: "inorganics" RELATED [ChEBI] +is_a: CHEBI:23367 ! molecular entity + +[Term] +id: CHEBI:24836 +name: inorganic oxide +namespace: chebi_ontology +subset: 3_STAR +synonym: "inorganic oxides" RELATED [ChEBI] +is_a: CHEBI:24835 ! inorganic molecular entity +is_a: CHEBI:25741 ! oxide + +[Term] +id: CHEBI:24837 +name: inorganic peroxide +namespace: chebi_ontology +def: "Compounds of structure ROOR' in which R and R' are inorganic groups." [] +subset: 3_STAR +synonym: "inorganic peroxide" EXACT [ChEBI] +synonym: "inorganic peroxides" RELATED [ChEBI] +is_a: CHEBI:24836 ! inorganic oxide +is_a: CHEBI:25940 ! peroxides + +[Term] +id: CHEBI:24839 +name: inorganic salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "anorganisches Salz" RELATED [ChEBI] +synonym: "inorganic salts" RELATED [ChEBI] +is_a: CHEBI:24835 ! inorganic molecular entity +is_a: CHEBI:24866 ! salt + +[Term] +id: CHEBI:24840 +name: inorganic sulfate salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "inorganic sulfate salts" RELATED [ChEBI] +synonym: "inorganic sulfates" RELATED [ChEBI] +is_a: CHEBI:24835 ! inorganic molecular entity +is_a: CHEBI:35175 ! sulfate salt + +[Term] +id: CHEBI:24844 +name: inosines +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:26399 ! purine ribonucleoside + +[Term] +id: CHEBI:24848 +name: inositol +namespace: chebi_ontology +def: "Any cyclohexane-1,2,3,4,5,6-hexol." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,2,3,4,5,6-cyclohexanehexol" RELATED [ChEBI] +synonym: "180.063" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "180.15588" RELATED MASS [ChEBI] +synonym: "C6H12O6" RELATED FORMULA [ChEBI] +synonym: "CDAISMWEOUEBRE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C6H12O6/c7-1-2(8)4(10)6(12)5(11)3(1)9/h1-12H" RELATED InChI [ChEBI] +synonym: "inositol" EXACT [IUBMB] +synonym: "inositols" EXACT IUPAC_NAME [IUPAC] +synonym: "inositols" RELATED [ChEBI] +synonym: "OC1C(O)C(O)C(O)C(O)C1O" RELATED SMILES [ChEBI] +is_a: CHEBI:23451 ! cyclitol +is_a: CHEBI:37206 ! hexol + +[Term] +id: CHEBI:24852 +name: insecticide +namespace: chebi_ontology +def: "Strictly, a substance intended to kill members of the class Insecta. In common usage, any substance used for preventing, destroying, repelling or controlling insects." [] +subset: 3_STAR +synonym: "insecticides" RELATED [ChEBI] +xref: Wikipedia:Insecticide +is_a: CHEBI:25944 ! pesticide + +[Term] +id: CHEBI:24853 +name: intercalator +namespace: chebi_ontology +def: "A role played by a chemical agent which exhibits the capability of occupying space between DNA base pairs due to particular properties in size, shape and charge. Intercalation of chemical compounds in DNA helix can result in replication errors (shift, mutation) or DNA damages." [] +subset: 3_STAR +synonym: "agente intercalante" RELATED [ChEBI] +synonym: "intercalating agent" RELATED [ChEBI] +synonym: "intercalating agents" RELATED [ChEBI] +synonym: "intercalating ligands" RELATED [ChEBI] +synonym: "intercalators" RELATED [ChEBI] +is_a: CHEBI:25435 ! mutagen + +[Term] +id: CHEBI:24866 +name: salt +namespace: chebi_ontology +def: "A salt is an assembly of cations and anions." [] +subset: 3_STAR +synonym: "ionic compound" RELATED [ChEBI] +synonym: "ionic compounds" RELATED [ChEBI] +synonym: "sal" RELATED [ChEBI] +synonym: "sales" RELATED [ChEBI] +synonym: "salt" EXACT IUPAC_NAME [IUPAC] +synonym: "salts" RELATED [ChEBI] +synonym: "Salz" RELATED [ChEBI] +synonym: "Salze" RELATED [ChEBI] +synonym: "sel" RELATED [ChEBI] +synonym: "sels" RELATED [ChEBI] +is_a: CHEBI:37577 ! heteroatomic molecular entity +relationship: has_part CHEBI:22563 ! anion +relationship: has_part CHEBI:36916 ! cation + +[Term] +id: CHEBI:24867 +name: monoatomic ion +namespace: chebi_ontology +subset: 3_STAR +synonym: "monoatomic ions" RELATED [ChEBI] +is_a: CHEBI:24870 ! ion +is_a: CHEBI:33238 ! monoatomic entity + +[Term] +id: CHEBI:24868 +name: organic salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic salts" RELATED [ChEBI] +synonym: "organisches Salz" RELATED [ChEBI] +is_a: CHEBI:24866 ! salt + +[Term] +id: CHEBI:24869 +name: ionophore +namespace: chebi_ontology +def: "A compound which can carry specific ions through membranes of cells or organelles." [] +subset: 3_STAR +synonym: "ionophore" EXACT IUPAC_NAME [IUPAC] +synonym: "ionophores" RELATED [ChEBI] +xref: Wikipedia:Ionophore +is_a: CHEBI:38632 ! membrane transport modulator + +[Term] +id: CHEBI:24870 +name: ion +namespace: chebi_ontology +def: "A molecular entity having a net electric charge." [] +subset: 3_STAR +synonym: "Ion" EXACT [ChEBI] +synonym: "ion" EXACT IUPAC_NAME [IUPAC] +synonym: "ion" EXACT [ChEBI] +synonym: "Ionen" RELATED [ChEBI] +synonym: "iones" RELATED [ChEBI] +synonym: "ions" RELATED [ChEBI] +is_a: CHEBI:23367 ! molecular entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:24873 +name: iron molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "iron compounds" RELATED [ChEBI] +synonym: "iron molecular entities" RELATED [ChEBI] +synonym: "iron molecular entity" EXACT [ChEBI] +is_a: CHEBI:33744 ! iron group molecular entity +relationship: has_part CHEBI:18248 ! iron atom + +[Term] +id: CHEBI:24874 +name: iron ionophore +namespace: chebi_ontology +def: "Any ionophore capable of transportation of iron ions across membranes." [] +subset: 3_STAR +synonym: "iron ionophores" RELATED [ChEBI] +is_a: CHEBI:24869 ! ionophore + +[Term] +id: CHEBI:24875 +name: iron cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "Fe" RELATED FORMULA [ChEBI] +synonym: "Fe cation" RELATED [UniProt] +synonym: "iron cation" EXACT IUPAC_NAME [IUPAC] +synonym: "iron cations" RELATED [ChEBI] +is_a: CHEBI:33515 ! transition element cation +is_a: CHEBI:82663 ! elemental iron + +[Term] +id: CHEBI:24898 +name: isoleucine +namespace: chebi_ontology +def: "A 2-amino-3-methylpentanoic acid having either (2R,3R)- or (2S,3S)-configuration." [] +subset: 3_STAR +synonym: "Hile" RELATED [IUPAC] +synonym: "isoleucine" EXACT IUPAC_NAME [IUPAC] +synonym: "rel-(2R,3R)-2-amino-3-methylpentanoic acid" RELATED [IUPAC] +xref: Beilstein:1721790 "Beilstein" +xref: CAS:443-79-8 "ChemIDplus" +xref: colombos:ISOLEUCINE +xref: colombos:ISOLEUCINE\:+ +xref: PMID:17190852 "Europe PMC" +xref: Reaxys:1721790 "Reaxys" +is_a: CHEBI:38264 ! 2-amino-3-methylpentanoic acid +relationship: has_part CHEBI:45557 ! sec-butyl group +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_conjugate_acid_of CHEBI:32612 ! isoleucinate +relationship: is_conjugate_base_of CHEBI:32613 ! isoleucinium + +[Term] +id: CHEBI:24913 +name: isoprenoid +namespace: chebi_ontology +def: "Any lipid formally derived from isoprene (2-methylbuta-1,3-diene), the skeleton of which can generally be discerned in repeated occurrence in the molecule. The skeleton of isoprenoids may differ from strict additivity of isoprene units by loss or shift of a fragment, commonly a methyl group. The class includes both hydrocarbons and oxygenated derivatives." [] +subset: 3_STAR +synonym: "isoprenoid" EXACT [ChEBI] +synonym: "isoprenoids" EXACT IUPAC_NAME [IUPAC] +synonym: "isoprenoids" RELATED [ChEBI] +xref: LIPID_MAPS_class:LMPR01 "LIPID MAPS" +xref: PMID:12769708 "Europe PMC" +xref: PMID:19219049 "Europe PMC" +is_a: CHEBI:18059 ! lipid + +[Term] +id: CHEBI:24951 +name: kanamycins +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:22479 ! amino cyclitol glycoside +is_a: CHEBI:22507 ! aminoglycoside antibiotic + +[Term] +id: CHEBI:24960 +name: ketoaldehyde +namespace: chebi_ontology +alt_id: CHEBI:6124 +def: "Any compound that has an aldehydic and ketonic group in the same molecule." [] +subset: 3_STAR +synonym: "ketoaldehydes" RELATED [ChEBI] +xref: KEGG:C01928 +is_a: CHEBI:17087 ! ketone +is_a: CHEBI:17478 ! aldehyde + +[Term] +id: CHEBI:24961 +name: ketoaldonate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ketoaldonate" EXACT [ChEBI] +synonym: "ketoaldonates" RELATED [ChEBI] +is_a: CHEBI:33721 ! carbohydrate acid anion + +[Term] +id: CHEBI:24963 +name: ketoaldonic acid +namespace: chebi_ontology +def: "Oxo carboxylic acids formally derived from aldonic acids by replacement of a secondary CHOH group by a carbonyl group." [] +subset: 3_STAR +synonym: "ketoaldonic acid" EXACT [ChEBI] +synonym: "ketoaldonic acids" RELATED [ChEBI] +is_a: CHEBI:33720 ! carbohydrate acid +is_a: CHEBI:35381 ! monosaccharide + +[Term] +id: CHEBI:24964 +name: deoxyketohexose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "deoxyketohexose phosphates" RELATED [ChEBI] +synonym: "ketodeoxyhexose phosphate" RELATED [ChEBI] +is_a: CHEBI:24972 ! ketohexose phosphate +is_a: CHEBI:63350 ! deoxyketohexose derivative + +[Term] +id: CHEBI:24965 +name: deoxyketohexose +namespace: chebi_ontology +def: "Any ketohexose having at least one hydroxy group replaced by hydrogen." [] +subset: 3_STAR +synonym: "deoxyketohexose" EXACT [ChEBI] +synonym: "deoxyketohexoses" RELATED [ChEBI] +synonym: "ketodeoxyhexose" RELATED [ChEBI] +synonym: "ketodeoxyhexoses" RELATED [ChEBI] +is_a: CHEBI:23639 ! deoxy sugar +is_a: CHEBI:24973 ! ketohexose + +[Term] +id: CHEBI:24970 +name: ketohexose bisphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ketohexose bisphosphate" EXACT [ChEBI] +synonym: "ketohexose bisphosphates" RELATED [ChEBI] +is_a: CHEBI:24972 ! ketohexose phosphate + +[Term] +id: CHEBI:24971 +name: ketohexose monophosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ketohexose monophosphate" EXACT [ChEBI] +synonym: "ketohexose monophosphates" RELATED [ChEBI] +is_a: CHEBI:24972 ! ketohexose phosphate + +[Term] +id: CHEBI:24972 +name: ketohexose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ketohexose phosphate" EXACT [ChEBI] +synonym: "ketohexose phosphates" RELATED [ChEBI] +is_a: CHEBI:35132 ! ketose phosphate +is_a: CHEBI:47878 ! hexose phosphate + +[Term] +id: CHEBI:24973 +name: ketohexose +namespace: chebi_ontology +def: "Any hexose containing a single ketone group." [] +subset: 3_STAR +synonym: "ketohexose" EXACT [ChEBI] +synonym: "ketohexoses" RELATED [ChEBI] +is_a: CHEBI:18133 ! hexose +is_a: CHEBI:24978 ! ketose + +[Term] +id: CHEBI:24978 +name: ketose +namespace: chebi_ontology +alt_id: CHEBI:6131 +subset: 3_STAR +synonym: "ketose" EXACT [ChEBI] +synonym: "ketoses" RELATED [ChEBI] +is_a: CHEBI:35381 ! monosaccharide + +[Term] +id: CHEBI:24982 +name: ketotriose +namespace: chebi_ontology +def: "Any ketone-containing triose." [] +subset: 3_STAR +synonym: "ketotriose" EXACT [ChEBI] +synonym: "ketotrioses" RELATED [ChEBI] +is_a: CHEBI:24978 ! ketose +is_a: CHEBI:27137 ! triose + +[Term] +id: CHEBI:24995 +name: lactam +namespace: chebi_ontology +def: "Cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring." [] +subset: 3_STAR +synonym: "lactam" EXACT [IUPAC] +synonym: "lactams" EXACT IUPAC_NAME [IUPAC] +synonym: "lactams" RELATED [ChEBI] +synonym: "Laktam" RELATED [ChEBI] +synonym: "Laktame" RELATED [ChEBI] +is_a: CHEBI:23443 ! cyclic amide +is_a: CHEBI:37622 ! carboxamide +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:24996 +name: lactate +namespace: chebi_ontology +def: "A hydroxy monocarboxylic acid anion that is the conjugate base of lactic acid, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "2-hydroxypropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "2-hydroxypropanoic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "2-hydroxypropionate" RELATED [ChemIDplus] +synonym: "89.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "89.07000" RELATED MASS [ChEBI] +synonym: "b-lactate" RELATED [ChEBI] +synonym: "beta-lactate" RELATED [ChEBI] +synonym: "C3H5O3" RELATED FORMULA [ChEBI] +synonym: "CC(O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H6O3/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6)/p-1" RELATED InChI [ChEBI] +synonym: "JVTAAEKCZFNVCJ-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "lactate" EXACT [UniProt] +synonym: "MeCH(OH)CO2 anion" RELATED [NIST_Chemistry_WebBook] +xref: Beilstein:3587719 "Beilstein" +xref: CAS:113-21-3 "NIST Chemistry WebBook" +xref: colombos:LACTATE +xref: Gmelin:240074 "Gmelin" +xref: KEGG:C01432 "ChEBI" +xref: MetaCyc:Lactate +is_a: CHEBI:36059 ! hydroxy monocarboxylic acid anion +relationship: has_functional_parent CHEBI:17272 ! propionate +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:28358 ! rac-lactic acid +relationship: is_conjugate_base_of CHEBI:78320 ! 2-hydroxypropanoic acid + +[Term] +id: CHEBI:25000 +name: lactone +namespace: chebi_ontology +def: "Any cyclic carboxylic ester containing a 1-oxacycloalkan-2-one structure, or an analogue having unsaturation or heteroatoms replacing one or more carbon atoms of the ring." [] +subset: 3_STAR +synonym: "Lacton" RELATED [ChEBI] +synonym: "lactona" RELATED [IUPAC] +synonym: "lactonas" RELATED [IUPAC] +synonym: "lactone" EXACT IUPAC_NAME [IUPAC] +synonym: "lactones" EXACT IUPAC_NAME [IUPAC] +synonym: "Lakton" RELATED [ChEBI] +synonym: "Laktone" RELATED [ChEBI] +is_a: CHEBI:33308 ! carboxylic ester +is_a: CHEBI:38104 ! oxacycle + +[Term] +id: CHEBI:25016 +name: lead atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "207.20000" RELATED MASS [ChEBI] +synonym: "207.977" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "82Pb" RELATED [IUPAC] +synonym: "[Pb]" RELATED SMILES [ChEBI] +synonym: "Blei" RELATED [ChEBI] +synonym: "InChI=1S/Pb" RELATED InChI [ChEBI] +synonym: "lead" EXACT IUPAC_NAME [IUPAC] +synonym: "lead" RELATED [ChEBI] +synonym: "Pb" RELATED [IUPAC] +synonym: "Pb" RELATED FORMULA [ChEBI] +synonym: "plomb" RELATED [ChEBI] +synonym: "plomo" RELATED [ChEBI] +synonym: "plumbum" RELATED [IUPAC] +synonym: "WABPQHHGFIMREM-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: KEGG:C06696 "ChEBI" +xref: WebElements:Pb +is_a: CHEBI:33306 ! carbon group element atom +is_a: CHEBI:33521 ! metal atom + +[Term] +id: CHEBI:25017 +name: leucine +namespace: chebi_ontology +def: "A branched-chain amino acid that consists of glycine in which one of the hydrogens attached to the alpha-carbon is substituted by an isobutyl group." [] +subset: 3_STAR +synonym: "(+-)-Leucine" RELATED [ChemIDplus] +synonym: "(RS)-Leucine" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "131.095" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "131.17296" RELATED MASS [ChEBI] +synonym: "2-amino-4-methylpentanoic acid" RELATED [IUPAC] +synonym: "C6H13NO2" RELATED FORMULA [ChEBI] +synonym: "CC(C)CC(N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "DL-Leucine" RELATED [ChemIDplus] +synonym: "Hleu" RELATED [IUPAC] +synonym: "InChI=1S/C6H13NO2/c1-4(2)3-5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9)" RELATED InChI [ChEBI] +synonym: "L" RELATED [ChEBI] +synonym: "Leu" RELATED [ChEBI] +synonym: "Leucin" RELATED [ChEBI] +synonym: "leucine" EXACT IUPAC_NAME [IUPAC] +synonym: "Leuzin" RELATED [ChEBI] +synonym: "ROHFNLRQFUQHCH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:636005 "Beilstein" +xref: CAS:328-39-2 "NIST Chemistry WebBook" +xref: colombos:LEUCINE +xref: Gmelin:50203 "Gmelin" +xref: KEGG:C16439 +xref: LIPID_MAPS_instance:LMFA01100048 "LIPID MAPS" +xref: PMID:17439666 "Europe PMC" +xref: Reaxys:636005 "Reaxys" +xref: Wikipedia:Leucine +is_a: CHEBI:22918 ! branched-chain amino acid +is_a: CHEBI:33704 ! alpha-amino acid +relationship: has_part CHEBI:30356 ! isobutyl group +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_conjugate_acid_of CHEBI:32627 ! leucinate +relationship: is_conjugate_base_of CHEBI:32628 ! leucinium +relationship: MCO:0000858 MCO:0000864 ! sucrose 15% carbon source + +[Term] +id: CHEBI:25094 +name: lysine +namespace: chebi_ontology +def: "A diamino acid that is caproic (hexanoic) acid bearing two amino substituents at positions 2 and 6." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "146.106" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "146.18764" RELATED MASS [ChEBI] +synonym: "2,6-diaminohexanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "alpha,epsilon-diaminocaproic acid" RELATED [ChEBI] +synonym: "C6H14N2O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)" RELATED InChI [ChEBI] +synonym: "K" RELATED [ChEBI] +synonym: "KDXKERNSBIXSRK-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "LYS" RELATED [ChEBI] +synonym: "Lysin" RELATED [ChEBI] +synonym: "lysine" EXACT IUPAC_NAME [IUPAC] +synonym: "NCCCCC(N)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:1616991 "Beilstein" +xref: CAS:70-54-2 "NIST Chemistry WebBook" +xref: Gmelin:279284 "Gmelin" +xref: KEGG:C16440 +xref: PMID:17439666 "Europe PMC" +xref: PMID:22264337 "Europe PMC" +xref: Reaxys:1616991 "Reaxys" +xref: Wikipedia:Lysine +is_a: CHEBI:33704 ! alpha-amino acid +is_a: CHEBI:35987 ! diamino acid +relationship: has_functional_parent CHEBI:30776 ! hexanoic acid +relationship: has_part CHEBI:50339 ! 4-aminobutyl group +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_conjugate_acid_of CHEBI:32563 ! lysinate +relationship: is_conjugate_base_of CHEBI:32564 ! lysinium(1+) + +[Term] +id: CHEBI:25105 +name: macrolide antibiotic +namespace: chebi_ontology +def: "A macrocyclic lactone with a ring of twelve or more members which exhibits antibiotic activity." [] +subset: 3_STAR +synonym: "macrolide antibiotics" RELATED [ChEBI] +synonym: "Makrolidantibiotika" RELATED [ChEBI] +is_a: CHEBI:25106 ! macrolide +relationship: has_role CHEBI:33281 ! antimicrobial agent + +[Term] +id: CHEBI:25106 +name: macrolide +namespace: chebi_ontology +def: "A macrocyclic lactone with a ring of twelve or more members derived from a polyketide." [] +subset: 3_STAR +synonym: "macrolide" EXACT [ChEBI] +synonym: "macrolides" EXACT IUPAC_NAME [IUPAC] +synonym: "macrolides" RELATED [ChEBI] +synonym: "Makrolid" RELATED [ChEBI] +xref: Wikipedia:Macrolide +is_a: CHEBI:26188 ! polyketide +is_a: CHEBI:63944 ! macrocyclic lactone + +[Term] +id: CHEBI:25107 +name: magnesium atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "12Mg" RELATED [IUPAC] +synonym: "23.985" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "24.30500" RELATED MASS [ChEBI] +synonym: "[Mg]" RELATED SMILES [ChEBI] +synonym: "FYYHWMGAXLPEAU-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/Mg" RELATED InChI [ChEBI] +synonym: "magnesio" RELATED [ChEBI] +synonym: "Magnesium" RELATED [ChEBI] +synonym: "magnesium" EXACT IUPAC_NAME [IUPAC] +synonym: "magnesium" RELATED [ChEBI] +synonym: "Mg" RELATED [IUPAC] +synonym: "Mg" RELATED FORMULA [ChEBI] +xref: CAS:7439-95-4 "ChemIDplus" +xref: DrugBank:DB01378 +xref: Gmelin:16207 "Gmelin" +xref: KEGG:C00305 "ChEBI" +xref: WebElements:Mg +is_a: CHEBI:22313 ! alkaline earth metal atom +relationship: has_role CHEBI:33937 ! macronutrient + +[Term] +id: CHEBI:25108 +name: magnesium molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "magnesium compounds" RELATED [ChEBI] +synonym: "magnesium molecular entities" RELATED [ChEBI] +synonym: "magnesium molecular entity" EXACT [ChEBI] +is_a: CHEBI:33299 ! alkaline earth molecular entity +relationship: has_part CHEBI:25107 ! magnesium atom + +[Term] +id: CHEBI:25115 +name: malate +namespace: chebi_ontology +def: "A dicarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of malic acid." [] +subset: 3_STAR +synonym: "malate anion" RELATED [ChEBI] +synonym: "malates" RELATED [ChEBI] +synonym: "malic acid anion" RELATED [ChEBI] +is_a: CHEBI:35693 ! dicarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:6650 ! malic acid + +[Term] +id: CHEBI:25140 +name: maltodextrin +namespace: chebi_ontology +def: "A dextrin in which the D-glucose units are linked by alpha-(1->4) glycosidic bonds." [] +subset: 3_STAR +xref: Wikipedia:Maltodextrin +is_a: CHEBI:23652 ! dextrins + +[Term] +id: CHEBI:25154 +name: manganese molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "manganese compounds" RELATED [ChEBI] +synonym: "manganese molecular entities" RELATED [ChEBI] +synonym: "manganese molecular entity" EXACT [ChEBI] +is_a: CHEBI:33743 ! manganese group molecular entity +relationship: has_part CHEBI:18291 ! manganese atom + +[Term] +id: CHEBI:25155 +name: manganese cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "manganese cation" EXACT IUPAC_NAME [IUPAC] +synonym: "manganese cations" RELATED [ChEBI] +synonym: "Mn" RELATED FORMULA [ChEBI] +is_a: CHEBI:33515 ! transition element cation +is_a: CHEBI:35115 ! elemental manganese + +[Term] +id: CHEBI:25166 +name: mannosamine +namespace: chebi_ontology +subset: 3_STAR +synonym: "mannosamines" RELATED [ChEBI] +is_a: CHEBI:24586 ! hexosamine + +[Term] +id: CHEBI:25195 +name: mercury atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "200.59000" RELATED MASS [ChEBI] +synonym: "201.971" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "80Hg" RELATED [IUPAC] +synonym: "[Hg]" RELATED SMILES [ChEBI] +synonym: "azogue" RELATED [ChEBI] +synonym: "Hg" RELATED [IUPAC] +synonym: "Hg" RELATED FORMULA [ChEBI] +synonym: "hydrargyrum" RELATED [IUPAC] +synonym: "InChI=1S/Hg" RELATED InChI [ChEBI] +synonym: "liquid silver" RELATED [ChemIDplus] +synonym: "mercure" RELATED [ChemIDplus] +synonym: "mercurio" RELATED [ChEBI] +synonym: "mercury" EXACT IUPAC_NAME [IUPAC] +synonym: "mercury" RELATED [ChEBI] +synonym: "QSHDDOUJBYECFT-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Quecksilber" RELATED [ChemIDplus] +synonym: "quicksilver" RELATED [ChemIDplus] +xref: CAS:7439-97-6 "ChemIDplus" +xref: WebElements:Hg +is_a: CHEBI:33340 ! zinc group element atom + +[Term] +id: CHEBI:25196 +name: mercury molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "mercury compounds" RELATED [ChEBI] +synonym: "mercury molecular entities" RELATED [ChEBI] +is_a: CHEBI:33673 ! zinc group molecular entity +relationship: has_part CHEBI:25195 ! mercury atom + +[Term] +id: CHEBI:25197 +name: mercury cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "mercury cations" RELATED [ChEBI] +is_a: CHEBI:33515 ! transition element cation +is_a: CHEBI:35113 ! elemental mercury + +[Term] +id: CHEBI:25212 +name: metabolite +namespace: chebi_ontology +alt_id: CHEBI:26619 +alt_id: CHEBI:35220 +def: "Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites." [] +subset: 3_STAR +synonym: "metabolite" EXACT IUPAC_NAME [IUPAC] +synonym: "metabolites" RELATED [ChEBI] +synonym: "primary metabolites" RELATED [ChEBI] +synonym: "secondary metabolites" RELATED [ChEBI] +is_a: CHEBI:52206 ! biochemical role + +[Term] +id: CHEBI:25213 +name: metal cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "a metal cation" RELATED [UniProt] +synonym: "metal cations" RELATED [ChEBI] +is_a: CHEBI:23906 ! monoatomic cation +is_a: CHEBI:36915 ! inorganic cation + +[Term] +id: CHEBI:25214 +name: metal-sulfur cluster +namespace: chebi_ontology +def: "A metal-sulfur cluster is a unit comprising two or more metal atoms and bridging sulfur ligand(s)." [] +subset: 3_STAR +synonym: "metal-sulfur clusters" RELATED [ChEBI] +synonym: "metallo-sulfur cluster" RELATED [ChEBI] +is_a: CHEBI:33733 ! heteronuclear cluster +relationship: has_role CHEBI:26348 ! prosthetic group + +[Term] +id: CHEBI:25223 +name: methanesulfonate ester +namespace: chebi_ontology +def: "An organosulfonic ester resulting from the formal condensation of methanesulfonic acid with the hydroxy group of an alcohol, phenol, heteroarenol, or enol." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "94.980" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "95.099" RELATED MASS [ChEBI] +synonym: "CH3O3SR" RELATED FORMULA [ChEBI] +synonym: "CS(O*)(=O)=O" RELATED SMILES [ChEBI] +synonym: "mesylate ester" RELATED [ChEBI] +synonym: "mesylate esters" RELATED [ChEBI] +synonym: "methanesulfonic acid esters" RELATED [ChEBI] +is_a: CHEBI:48544 ! methanesulfonates +is_a: CHEBI:83347 ! organosulfonic ester + +[Term] +id: CHEBI:25224 +name: methanesulfonate +namespace: chebi_ontology +def: "A 1,1-diunsubstituted alkanesulfonate that is the conjugate base of methanesulfonic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "94.980" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "95.09872" RELATED MASS [ChEBI] +synonym: "AFVFQIVMOAPDHO-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "CH3O3S" RELATED FORMULA [ChEBI] +synonym: "CS([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/CH4O3S/c1-5(2,3)4/h1H3,(H,2,3,4)/p-1" RELATED InChI [ChEBI] +synonym: "methanesulfonate" EXACT IUPAC_NAME [IUPAC] +synonym: "methanesulfonate" EXACT [UniProt] +synonym: "methylsulfonate" RELATED [UM-BBD] +xref: MetaCyc:CPD-3746 +xref: UM-BBD_compID:c0347 "UM-BBD" +is_a: CHEBI:62081 ! 1,1-diunsubstituted alkanesulfonate +relationship: is_conjugate_base_of CHEBI:27376 ! methanesulfonic acid + +[Term] +id: CHEBI:25255 +name: methyl methanesulfonate +namespace: chebi_ontology +def: "A methanesulfonate ester resulting from the formal condensation of methanesulfonic acid with methanol." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "110.004" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "110.13200" RELATED MASS [ChEBI] +synonym: "as-Dimethyl sulfite" RELATED [ChemIDplus] +synonym: "C2H6O3S" RELATED FORMULA [ChEBI] +synonym: "CB1540" RELATED [ChEBI] +synonym: "COS(C)(=O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C2H6O3S/c1-5-6(2,3)4/h1-2H3" RELATED InChI [ChEBI] +synonym: "MBABOKRGFJTBAE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Methanesulfonic acid methyl ester" RELATED [ChemIDplus] +synonym: "Methyl mesylate" RELATED [ChemIDplus] +synonym: "methyl methanesulfonate" EXACT IUPAC_NAME [IUPAC] +synonym: "MMS" RELATED [KEGG_COMPOUND] +synonym: "MMS" RELATED [ChemIDplus] +xref: CAS:66-27-3 "KEGG COMPOUND" +xref: KEGG:C19181 +xref: MetaCyc:CPD-7038 +xref: PMID:11016630 "Europe PMC" +xref: PMID:14761437 "Europe PMC" +xref: PMID:16764919 "Europe PMC" +xref: PMID:21353429 "Europe PMC" +xref: PMID:21860482 "Europe PMC" +xref: PMID:22907509 "Europe PMC" +xref: PMID:23117069 "Europe PMC" +xref: PMID:23384783 "Europe PMC" +xref: PMID:23483329 "Europe PMC" +xref: Reaxys:1098586 "Reaxys" +xref: Wikipedia:Methyl_methanesulfonate +is_a: CHEBI:25223 ! methanesulfonate ester +relationship: has_role CHEBI:22333 ! alkylating agent +relationship: has_role CHEBI:50903 ! carcinogenic agent +relationship: has_role CHEBI:68495 ! apoptosis inducer + +[Term] +id: CHEBI:25274 +name: methylamines +namespace: chebi_ontology +subset: 3_STAR +synonym: "methylated amines" RELATED [ChEBI] +is_a: CHEBI:22331 ! alkylamines + +[Term] +id: CHEBI:25350 +name: mevalonate +namespace: chebi_ontology +def: "A hydroxy monocarboxylic acid anion that is the conjugate base of mevalonic acid, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "147.066" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "147.14914" RELATED MASS [ChEBI] +synonym: "3,5-dihydroxy-3-methylpentanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H11O4" RELATED FORMULA [ChEBI] +synonym: "CC(O)(CCO)CC([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C6H12O4/c1-6(10,2-3-7)4-5(8)9/h7,10H,2-4H2,1H3,(H,8,9)/p-1" RELATED InChI [ChEBI] +synonym: "KJTLQQUUPVSXIM-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "mevalonate anion" RELATED [ChEBI] +xref: Beilstein:4383181 "Beilstein" +xref: colombos:MEVALONATE +xref: Reaxys:4383181 "Reaxys" +is_a: CHEBI:36059 ! hydroxy monocarboxylic acid anion +relationship: has_functional_parent CHEBI:31011 ! valerate +relationship: is_conjugate_base_of CHEBI:25351 ! mevalonic acid + +[Term] +id: CHEBI:25351 +name: mevalonic acid +namespace: chebi_ontology +def: "A dihydroxy monocarboxylic acid comprising valeric acid having two hydroxy groups at the 3- and 5-positions together with a methyl group at the 3-position." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "148.074" RELATED MONOISOTOPIC_MASS [ChemIDplus] +synonym: "148.15708" RELATED MASS [ChEBI] +synonym: "3,5-dihydroxy-3-methylpentanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H12O4" RELATED FORMULA [ChemIDplus] +synonym: "CC(O)(CCO)CC(O)=O" RELATED SMILES [ChEBI] +synonym: "DL-Mevalonic acid" RELATED [HMDB] +synonym: "InChI=1S/C6H12O4/c1-6(10,2-3-7)4-5(8)9/h7,10H,2-4H2,1H3,(H,8,9)" RELATED InChI [ChEBI] +synonym: "KJTLQQUUPVSXIM-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "MVA" RELATED [HMDB] +synonym: "RS-Mevalonic acid" RELATED [HMDB] +xref: Beilstein:1722595 "Beilstein" +xref: HMDB:HMDB00227 +xref: PMID:22770225 "Europe PMC" +xref: Reaxys:1722595 "Reaxys" +is_a: CHEBI:35972 ! dihydroxy monocarboxylic acid +relationship: has_functional_parent CHEBI:17418 ! valeric acid +relationship: has_role CHEBI:25212 ! metabolite +relationship: is_conjugate_acid_of CHEBI:25350 ! mevalonate + +[Term] +id: CHEBI:25355 +name: mitochondrial respiratory-chain inhibitor +namespace: chebi_ontology +subset: 3_STAR +synonym: "mitochondrial electron transport chain inhibitors" RELATED [ChEBI] +synonym: "mitochondrial electron-transport chain inhibitor" RELATED [ChEBI] +synonym: "mitochondrial respiratory chain inhibitors" RELATED [ChEBI] +is_a: CHEBI:38497 ! respiratory-chain inhibitor + +[Term] +id: CHEBI:25357 +name: mitomycin +namespace: chebi_ontology +def: "A family of aziridine-containing natural products isolated from Streptomyces caespitosus or Streptomyces lavendulae." [] +subset: 3_STAR +synonym: "mitomycins" RELATED [ChEBI] +xref: PMID:19777135 "Europe PMC" +xref: Wikipedia:Mitomycin +is_a: CHEBI:23003 ! carbamate ester +is_a: CHEBI:25830 ! p-quinones +is_a: CHEBI:38303 ! azirinopyrroloindole +relationship: has_role CHEBI:24853 ! intercalator +relationship: has_role CHEBI:76969 ! bacterial metabolite + +[Term] +id: CHEBI:25362 +name: elemental molecule +namespace: chebi_ontology +def: "A molecule all atoms of which have the same atomic number." [] +subset: 3_STAR +synonym: "homoatomic molecule" RELATED [ChEBI] +synonym: "homoatomic molecules" RELATED [ChEBI] +is_a: CHEBI:25367 ! molecule +is_a: CHEBI:33259 ! elemental molecular entity + +[Term] +id: CHEBI:25367 +name: molecule +namespace: chebi_ontology +def: "Any polyatomic entity that is an electrically neutral entity consisting of more than one atom." [] +subset: 3_STAR +synonym: "molecula" RELATED [IUPAC] +synonym: "molecule" EXACT [IUPAC] +synonym: "molecules" RELATED [IUPAC] +synonym: "Molekuel" RELATED [ChEBI] +synonym: "neutral molecular compounds" RELATED [IUPAC] +is_a: CHEBI:36357 ! polyatomic entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:25370 +name: molybdenum molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "molybdenum compounds" RELATED [ChEBI] +synonym: "molybdenum molecular entities" RELATED [ChEBI] +is_a: CHEBI:33741 ! chromium group molecular entity +relationship: has_part CHEBI:28685 ! molybdenum atom + +[Term] +id: CHEBI:25371 +name: molybdic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "161.95348" RELATED MASS [ChEBI] +synonym: "163.901" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[H]O[Mo](=O)(=O)O[H]" RELATED SMILES [ChEBI] +synonym: "[MoO2(OH)2]" RELATED [ChEBI] +synonym: "dihydroxidodioxidomolybdenum" EXACT IUPAC_NAME [IUPAC] +synonym: "H2MoO4" RELATED [ChEBI] +synonym: "H2MoO4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/Mo.2H2O.2O/h;2*1H2;;/q+2;;;;/p-2" RELATED InChI [ChEBI] +synonym: "molybdic acid" EXACT [NIST_Chemistry_WebBook] +synonym: "molybdic(VI) acid" RELATED [ChemIDplus] +synonym: "VLAPMBHFAWRUQP-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +xref: CAS:7782-91-4 "ChemIDplus" +xref: Gmelin:26071 "Gmelin" +is_a: CHEBI:36267 ! molybdenum oxoacid +relationship: is_conjugate_acid_of CHEBI:36263 ! hydrogenmolybdate + +[Term] +id: CHEBI:25375 +name: monoamine molecular messenger +namespace: chebi_ontology +def: "A group of neurotransmitters and neuromodulators that contain one amino group that is connected to an aromatic ring by ethylene group (-CH2-CH2-). Monoamines are derived from the aromatic amino acids phenylalanine, tyrosine, histidine and tryptophan." [] +subset: 3_STAR +synonym: "monamines" RELATED [ChEBI] +synonym: "monoamine" RELATED [UniProt] +synonym: "monoamines" RELATED [ChEBI] +is_a: CHEBI:63534 ! monoamine +relationship: has_role CHEBI:33280 ! molecular messenger + +[Term] +id: CHEBI:25381 +name: monoalkyl phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "monoalkyl phosphates" RELATED [ChEBI] +is_a: CHEBI:22324 ! alkyl phosphate + +[Term] +id: CHEBI:25384 +name: monocarboxylic acid +namespace: chebi_ontology +def: "An oxoacid containing a single carboxy group." [] +subset: 3_STAR +synonym: "monocarboxylic acid" EXACT [UniProt] +synonym: "monocarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:33575 ! carboxylic acid +relationship: is_conjugate_acid_of CHEBI:35757 ! monocarboxylic acid anion + +[Term] +id: CHEBI:25388 +name: monohydroxybenzoate +namespace: chebi_ontology +def: "A hydroxybenzoate carrying a single hydroxy substituent at unspecified position." [] +subset: 3_STAR +synonym: "monohydroxybenzoates" RELATED [ChEBI] +is_a: CHEBI:24675 ! hydroxybenzoate + +[Term] +id: CHEBI:25389 +name: monohydroxybenzoic acid +namespace: chebi_ontology +def: "Any hydroxybenzoic acid having a single phenolic hydroxy substituent on the benzene ring." [] +subset: 3_STAR +synonym: "monohydroxybenzoic acids" RELATED [ChEBI] +is_a: CHEBI:24676 ! hydroxybenzoic acid + +[Term] +id: CHEBI:25414 +name: monoatomic monocation +namespace: chebi_ontology +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "0.00000" RELATED MASS [ChEBI] +synonym: "[*+]" RELATED SMILES [ChEBI] +synonym: "monoatomic monocations" RELATED [ChEBI] +synonym: "monovalent cation" RELATED [UniProt] +synonym: "monovalent inorganic cations" RELATED [ChEBI] +is_a: CHEBI:23906 ! monoatomic cation + +[Term] +id: CHEBI:25430 +name: monoatomic polycation +namespace: chebi_ontology +subset: 3_STAR +synonym: "monoatomic polycations" RELATED [ChEBI] +synonym: "multivalent inorganic cations" RELATED [ChEBI] +is_a: CHEBI:23906 ! monoatomic cation + +[Term] +id: CHEBI:25432 +name: muramic acids +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:28963 ! amino sugar +is_a: CHEBI:63436 ! carbohydrate acid derivative + +[Term] +id: CHEBI:25435 +name: mutagen +namespace: chebi_ontology +def: "An agent that increases the frequency of mutations above the normal background level, usually by interacting directly with DNA and causing it damage, including base substitution." [] +subset: 3_STAR +synonym: "mutagene" RELATED [ChEBI] +synonym: "mutagenes" RELATED [ChEBI] +synonym: "mutagenic agent" RELATED [ChEBI] +synonym: "mutageno" RELATED [ChEBI] +synonym: "mutagenos" RELATED [ChEBI] +synonym: "mutagens" RELATED [ChEBI] +xref: Wikipedia:Mutagen +is_a: CHEBI:50902 ! genotoxin + +[Term] +id: CHEBI:25481 +name: naphthoquinone +namespace: chebi_ontology +def: "A polycyclic aromatic ketone metabolite of naphthalene." [] +subset: 3_STAR +synonym: "naphthoquinones" RELATED [ChEBI] +is_a: CHEBI:36141 ! quinone + +[Term] +id: CHEBI:25506 +name: neuraminates +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:63561 ! ketoaldonate derivative +relationship: is_conjugate_base_of CHEBI:25508 ! neuraminic acids + +[Term] +id: CHEBI:25508 +name: neuraminic acids +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:28963 ! amino sugar +is_a: CHEBI:63394 ! ketoaldonic acid derivative +relationship: is_conjugate_acid_of CHEBI:25506 ! neuraminates + +[Term] +id: CHEBI:25512 +name: neurotransmitter +namespace: chebi_ontology +def: "An endogenous compound that is used to transmit information across the synapse between a neuron and another cell." [] +subset: 3_STAR +synonym: "neurotransmitters" RELATED [ChEBI] +xref: Wikipedia:Neurotransmitter +is_a: CHEBI:33280 ! molecular messenger + +[Term] +id: CHEBI:25516 +name: nickel cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "Ni" RELATED FORMULA [ChEBI] +synonym: "Ni cation" RELATED [UniProt] +synonym: "nickel cation" EXACT IUPAC_NAME [IUPAC] +synonym: "nickel cations" RELATED [ChEBI] +is_a: CHEBI:33515 ! transition element cation +is_a: CHEBI:60248 ! nickel ion + +[Term] +id: CHEBI:25549 +name: nitrites +namespace: chebi_ontology +subset: 1_STAR +is_a: CHEBI:51143 ! nitrogen molecular entity +relationship: has_functional_parent CHEBI:25567 ! nitrous acid + +[Term] +id: CHEBI:25555 +name: nitrogen atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "7N" RELATED [IUPAC] +synonym: "azote" RELATED [IUPAC] +synonym: "N" RELATED [IUPAC] +synonym: "N" RELATED FORMULA [ChEBI] +synonym: "nitrogen" EXACT IUPAC_NAME [IUPAC] +synonym: "nitrogen" RELATED [ChEBI] +synonym: "nitrogeno" RELATED [ChEBI] +synonym: "Stickstoff" RELATED [ChEBI] +xref: WebElements:N +is_a: CHEBI:25585 ! nonmetal atom +is_a: CHEBI:33300 ! pnictogen +relationship: has_role CHEBI:33937 ! macronutrient + +[Term] +id: CHEBI:25558 +name: organonitrogen heterocyclic antibiotic +namespace: chebi_ontology +subset: 3_STAR +synonym: "organonitrogen heterocyclic antibiotics" RELATED [ChEBI] +is_a: CHEBI:24531 ! heterocyclic antibiotic +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + +[Term] +id: CHEBI:25562 +name: nitrophenol +namespace: chebi_ontology +def: "Any member of the class of phenols or substituted phenols carrying at least 1 nitro group." [] +subset: 3_STAR +synonym: "nitrophenols" RELATED [ChEBI] +is_a: CHEBI:33853 ! phenols +is_a: CHEBI:35716 ! C-nitro compound + +[Term] +id: CHEBI:25567 +name: nitrous acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "47.001" RELATED MONOISOTOPIC_MASS [NIST_Chemistry_WebBook] +synonym: "47.01348" RELATED MASS [ChEBI] +synonym: "[H]ON=O" RELATED SMILES [ChEBI] +synonym: "[NO(OH)]" RELATED [IUPAC] +synonym: "dioxonitric acid" EXACT IUPAC_NAME [IUPAC] +synonym: "HNO2" RELATED FORMULA [NIST_Chemistry_WebBook] +synonym: "HNO2" RELATED [IUPAC] +synonym: "hydrogen dioxonitrate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydroxidooxidonitrogen" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/HNO2/c2-1-3/h(H,2,3)" RELATED InChI [ChEBI] +synonym: "IOVCWXUNBOPUCH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "nitrosyl hydroxide" RELATED [NIST_Chemistry_WebBook] +synonym: "nitrous acid" EXACT IUPAC_NAME [IUPAC] +xref: CAS:7782-77-6 "ChemIDplus" +xref: Gmelin:983 "Gmelin" +xref: KEGG:C00088 +xref: PDBeChem:NO2 +is_a: CHEBI:33455 ! nitrogen oxoacid +relationship: is_conjugate_acid_of CHEBI:16301 ! nitrite + +[Term] +id: CHEBI:25585 +name: nonmetal atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "Nichtmetall" RELATED [ChEBI] +synonym: "Nichtmetalle" RELATED [ChEBI] +synonym: "no metal" RELATED [ChEBI] +synonym: "no metales" RELATED [ChEBI] +synonym: "non-metal" RELATED [ChEBI] +synonym: "non-metaux" RELATED [ChEBI] +synonym: "nonmetal" EXACT IUPAC_NAME [IUPAC] +synonym: "nonmetal" RELATED [ChEBI] +synonym: "nonmetals" RELATED [ChEBI] +is_a: CHEBI:33250 ! atom + +[Term] +id: CHEBI:2559 +name: aldohexose 6-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "Aldohexose 6-phosphate" EXACT [KEGG_COMPOUND] +synonym: "C6H13O9P" RELATED FORMULA [KEGG_COMPOUND] +xref: KEGG:C03251 +is_a: CHEBI:47877 ! hexose 6-phosphate + +[Term] +id: CHEBI:25605 +name: nucleoside antibiotic +namespace: chebi_ontology +subset: 1_STAR +synonym: "nucleoside antibiotics" RELATED [ChEBI] +is_a: CHEBI:33281 ! antimicrobial agent + +[Term] +id: CHEBI:25608 +name: nucleoside phosphate +namespace: chebi_ontology +def: "A nucleobase-containing molecular entity that is a nucleoside in which one or more of the sugar hydroxy groups has been converted into a mono- or poly-phosphate. The term includes both nucleotides and non-nucleotide nucleoside phosphates." [] +subset: 3_STAR +synonym: "NMP" RELATED [KEGG_COMPOUND] +synonym: "Nucleoside monophosphate" RELATED [KEGG_COMPOUND] +synonym: "nucleoside phosphates" RELATED [ChEBI] +xref: KEGG:C01329 +is_a: CHEBI:25703 ! organic phosphate +is_a: CHEBI:37734 ! phosphoric ester +is_a: CHEBI:61120 ! nucleobase-containing molecular entity +relationship: has_functional_parent CHEBI:33838 ! nucleoside + +[Term] +id: CHEBI:25646 +name: octanoate +namespace: chebi_ontology +def: "A straight-chain saturated fatty acid anion that is the conjugate base of octanoic acid (caprylic acid); believed to block adipogenesis." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "1-heptanecarboxylate" RELATED [ChEBI] +synonym: "143.107" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "143.204" RELATED MASS [ChEBI] +synonym: "C(CCCCCC)C(=O)[O-]" RELATED SMILES [ChEBI] +synonym: "C8H15O2" RELATED FORMULA [ChEBI] +synonym: "caprilate" RELATED [ChEBI] +synonym: "caprylate" RELATED [ChEBI] +synonym: "CH3-[CH2]6-COO(-)" RELATED [ChEBI] +synonym: "InChI=1S/C8H16O2/c1-2-3-4-5-6-7-8(9)10/h2-7H2,1H3,(H,9,10)/p-1" RELATED InChI [ChEBI] +synonym: "n-caprylate" RELATED [ChEBI] +synonym: "n-octanoate" RELATED [ChEBI] +synonym: "n-octoate" RELATED [ChEBI] +synonym: "n-octylate" RELATED [ChEBI] +synonym: "octanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "octanoate" EXACT [ChemIDplus] +synonym: "octanoate" EXACT [UniProt] +synonym: "octanoic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "octylate" RELATED [ChEBI] +synonym: "WWZKQHOCKIZLMA-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3588079 "Beilstein" +xref: CAS:74-81-7 "ChemIDplus" +xref: Gmelin:329219 "Gmelin" +xref: PMID:11983812 "Europe PMC" +xref: Reaxys:3588079 "Reaxys" +xref: UM-BBD_compID:c0047 "ChEBI" +is_a: CHEBI:58954 ! straight-chain saturated fatty acid anion +is_a: CHEBI:78117 ! fatty acid anion 8:0 +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:28837 ! octanoic acid + +[Term] +id: CHEBI:25676 +name: oligopeptide +namespace: chebi_ontology +alt_id: CHEBI:7755 +def: "A peptide containing a relatively small number of amino acids." [] +subset: 3_STAR +synonym: "Oligopeptid" RELATED [ChEBI] +synonym: "oligopeptides" EXACT IUPAC_NAME [IUPAC] +synonym: "oligopeptido" RELATED [ChEBI] +xref: Wikipedia:Oligopeptide +is_a: CHEBI:16670 ! peptide + +[Term] +id: CHEBI:25693 +name: organic heteromonocyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic heteromonocyclic compounds" RELATED [ChEBI] +is_a: CHEBI:24532 ! organic heterocyclic compound +is_a: CHEBI:33670 ! heteromonocyclic compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:25696 +name: organic anion +namespace: chebi_ontology +def: "Any organic ion with a net negative charge." [] +subset: 3_STAR +synonym: "organic anions" RELATED [ChEBI] +is_a: CHEBI:22563 ! anion +is_a: CHEBI:25699 ! organic ion +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:25697 +name: organic cation +namespace: chebi_ontology +def: "Any organic ion with a net positive charge." [] +subset: 3_STAR +synonym: "organic cations" RELATED [ChEBI] +is_a: CHEBI:25699 ! organic ion +is_a: CHEBI:36916 ! cation +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:25698 +name: ether +namespace: chebi_ontology +def: "An organooxygen compound with formula ROR, where R is not hydrogen." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "15.995" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "15.99940" RELATED MASS [ChEBI] +synonym: "[*]O[*]" RELATED SMILES [ChEBI] +synonym: "ether" EXACT IUPAC_NAME [IUPAC] +synonym: "ethers" EXACT IUPAC_NAME [IUPAC] +synonym: "ethers" RELATED [ChEBI] +synonym: "OR2" RELATED FORMULA [ChEBI] +is_a: CHEBI:36963 ! organooxygen compound + +[Term] +id: CHEBI:25699 +name: organic ion +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic ions" RELATED [ChEBI] +is_a: CHEBI:24870 ! ion +is_a: CHEBI:50860 ! organic molecular entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:25701 +name: organic oxide +namespace: chebi_ontology +def: "An oxide in which the oxygen atom is bonded to a carbon atom." [] +subset: 3_STAR +synonym: "organic oxides" RELATED [ChEBI] +is_a: CHEBI:25741 ! oxide +is_a: CHEBI:72695 ! organic molecule + +[Term] +id: CHEBI:25703 +name: organic phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic phosphate" EXACT [ChEBI] +synonym: "organic phosphate ester" RELATED [ChEBI] +synonym: "organic phosphate esters" RELATED [ChEBI] +synonym: "organic phosphates" RELATED [ChEBI] +synonym: "organophosphate ester" RELATED [ChEBI] +synonym: "organophosphate esters" RELATED [ChEBI] +is_a: CHEBI:25710 ! organophosphorus compound +is_a: CHEBI:26020 ! phosphate + +[Term] +id: CHEBI:2571 +name: aliphatic alcohol +namespace: chebi_ontology +def: "An alcohol derived from an aliphatic compound." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [KEGG_COMPOUND] +synonym: "17.003" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "17.007" RELATED MASS [KEGG_COMPOUND] +synonym: "Aliphatic alcohol" EXACT [KEGG_COMPOUND] +synonym: "aliphatic alcohols" RELATED [ChEBI] +synonym: "an aliphatic alcohol" RELATED [UniProt] +synonym: "HOR" RELATED FORMULA [KEGG_COMPOUND] +xref: KEGG:C02525 +is_a: CHEBI:30879 ! alcohol + +[Term] +id: CHEBI:25710 +name: organophosphorus compound +namespace: chebi_ontology +def: "An organophosphorus compound is formally a compound containing at least one carbon-phosphorus bond, but the term is often extended to include esters and thioesters." [] +subset: 3_STAR +synonym: "organophosphorus compound" EXACT [ChEBI] +synonym: "organophosphorus compounds" RELATED [ChEBI] +is_a: CHEBI:26082 ! phosphorus molecular entity +is_a: CHEBI:33285 ! heteroorganic entity + +[Term] +id: CHEBI:25728 +name: osmolyte +namespace: chebi_ontology +def: "A solute used by a cell under water stress to maintain cell volume." [] +subset: 3_STAR +synonym: "osmolytes" RELATED [ChEBI] +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:25741 +name: oxide +namespace: chebi_ontology +def: "An oxide is a chemical compound of oxygen with other chemical elements." [] +subset: 3_STAR +synonym: "oxide" EXACT [ChEBI] +synonym: "oxides" RELATED [ChEBI] +is_a: CHEBI:25806 ! oxygen molecular entity +is_a: CHEBI:37577 ! heteroatomic molecular entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:25750 +name: oxime +namespace: chebi_ontology +def: "Compounds of structure R2C=NOH derived from condensation of aldehydes or ketones with hydroxylamine. Oximes from aldehydes may be called aldoximes; those from ketones may be called ketoximes." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "43.006" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "43.02470" RELATED MASS [ChEBI] +synonym: "CHNOR2" RELATED FORMULA [ChEBI] +synonym: "O\\N=C(\\[*])[*]" RELATED SMILES [ChEBI] +synonym: "oxime" EXACT [IUPAC] +synonym: "oximes" EXACT IUPAC_NAME [IUPAC] +synonym: "oximes" RELATED [ChEBI] +is_a: CHEBI:50860 ! organic molecular entity +is_a: CHEBI:51143 ! nitrogen molecular entity + +[Term] +id: CHEBI:25754 +name: oxo carboxylic acid +namespace: chebi_ontology +def: "Any compound that has an aldehydic or ketonic group as well as a carboxylic acid group in the same molecule." [] +subset: 3_STAR +synonym: "oxo acids" RELATED [IUPAC] +synonym: "oxo carboxylic acids" EXACT IUPAC_NAME [IUPAC] +synonym: "oxo carboxylic acids" RELATED [ChEBI] +is_a: CHEBI:33575 ! carboxylic acid + +[Term] +id: CHEBI:25805 +name: oxygen atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "15.995" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "15.99940" RELATED MASS [ChEBI] +synonym: "8O" RELATED [IUPAC] +synonym: "[O]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/O" RELATED InChI [ChEBI] +synonym: "O" RELATED [IUPAC] +synonym: "O" RELATED FORMULA [ChEBI] +synonym: "oxigeno" RELATED [ChEBI] +synonym: "oxygen" EXACT IUPAC_NAME [IUPAC] +synonym: "oxygen" RELATED [ChEBI] +synonym: "oxygene" RELATED [ChEBI] +synonym: "QVGXLLKOCUKJST-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Sauerstoff" RELATED [ChEBI] +xref: KEGG:C00007 "ChEBI" +xref: WebElements:O +is_a: CHEBI:25585 ! nonmetal atom +is_a: CHEBI:33303 ! chalcogen +relationship: has_role CHEBI:33937 ! macronutrient + +[Term] +id: CHEBI:25806 +name: oxygen molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "oxygen molecular entities" RELATED [ChEBI] +synonym: "oxygen molecular entity" EXACT [ChEBI] +is_a: CHEBI:33304 ! chalcogen molecular entity +relationship: has_part CHEBI:25805 ! oxygen atom +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:25810 +name: oxopurine +namespace: chebi_ontology +subset: 3_STAR +synonym: "oxopurines" RELATED [ChEBI] +is_a: CHEBI:26401 ! purines + +[Term] +id: CHEBI:25830 +name: p-quinones +namespace: chebi_ontology +def: "A quinone in which the two oxo groups of the quinone are located para to each other on the 6-membered quinonoid ring." [] +subset: 3_STAR +synonym: "p-quinone" RELATED [ChEBI] +synonym: "para-quinones" RELATED [ChEBI] +is_a: CHEBI:36141 ! quinone + +[Term] +id: CHEBI:25848 +name: pantothenic acids +namespace: chebi_ontology +def: "A class of amides formed from pantoic acid and beta-alanine and its derivatives." [] +subset: 3_STAR +is_a: CHEBI:22823 ! beta-alanine derivative +is_a: CHEBI:37622 ! carboxamide +relationship: has_role CHEBI:23357 ! cofactor +relationship: has_role CHEBI:27314 ! water-soluble vitamin + +[Term] +id: CHEBI:25865 +name: penicillanic acids +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:33575 ! carboxylic acid +is_a: CHEBI:35992 ! penams + +[Term] +id: CHEBI:25872 +name: pentacyclic triterpenoid +namespace: chebi_ontology +subset: 3_STAR +synonym: "pentacyclic triterpenoids" RELATED [ChEBI] +is_a: CHEBI:36615 ! triterpenoid +is_a: CHEBI:51958 ! organic polycyclic compound + +[Term] +id: CHEBI:25883 +name: pentahydroxyflavone +namespace: chebi_ontology +def: "A hydroxyflavone substituted by five hydroxy groups." [] +subset: 3_STAR +synonym: "pentahydroxyflavones" RELATED [ChEBI] +is_a: CHEBI:24698 ! hydroxyflavone + +[Term] +id: CHEBI:25900 +name: aldopentose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "aldopentose phosphate" EXACT [ChEBI] +synonym: "aldopentose phosphates" RELATED [ChEBI] +is_a: CHEBI:35131 ! aldose phosphate +is_a: CHEBI:84055 ! pentose phosphate + +[Term] +id: CHEBI:25901 +name: pentose +namespace: chebi_ontology +def: "A five-carbon monosaccharide which in its linear form contains either an aldehyde group at position 1 (aldopentose) or a ketone group at position 2 (ketopentose)." [] +subset: 3_STAR +synonym: "pentose" EXACT [ChEBI] +synonym: "pentoses" RELATED [ChEBI] +is_a: CHEBI:35381 ! monosaccharide + +[Term] +id: CHEBI:25940 +name: peroxides +namespace: chebi_ontology +def: "Compounds of structure ROOR'." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "31.990" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[*]OO[*]" RELATED SMILES [ChEBI] +synonym: "a peroxide" RELATED [UniProt] +synonym: "O2R2" RELATED FORMULA [ChEBI] +is_a: CHEBI:25741 ! oxide +relationship: has_part CHEBI:29369 ! peroxy group + +[Term] +id: CHEBI:25941 +name: peroxynitrite +namespace: chebi_ontology +def: "The nitrogen oxoanion formed by loss of a proton from peroxynitrous acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "61.988" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "62.00494" RELATED MASS [ChEBI] +synonym: "[NO(OO)](-)" RELATED [IUPAC] +synonym: "[O-]ON=O" RELATED SMILES [ChEBI] +synonym: "azoperoxoite" EXACT IUPAC_NAME [IUPAC] +synonym: "CMFNMSMUKZHDEY-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/HNO3/c2-1-4-3/h3H/p-1" RELATED InChI [ChEBI] +synonym: "NO3" RELATED FORMULA [ChEBI] +synonym: "oxidoperoxidonitrate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "peroxynitrite" EXACT [UniProt] +synonym: "peroxynitrite" EXACT [IUPAC] +xref: CAS:19059-14-4 "KEGG COMPOUND" +xref: colombos:PEROXYNITRITE +xref: Gmelin:674445 "Gmelin" +xref: KEGG:C16845 +xref: Wikipedia:Peroxynitrite +is_a: CHEBI:26523 ! reactive oxygen species +is_a: CHEBI:33458 ! nitrogen oxoanion +is_a: CHEBI:62764 ! reactive nitrogen species +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:25942 ! peroxynitrous acid + +[Term] +id: CHEBI:25942 +name: peroxynitrous acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "(dioxidanido)oxidonitrogen" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "62.996" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "63.01288" RELATED MASS [ChEBI] +synonym: "[H]OON=O" RELATED SMILES [ChEBI] +synonym: "[NO(OOH)]" RELATED [IUPAC] +synonym: "azoperoxous acid" EXACT IUPAC_NAME [IUPAC] +synonym: "CMFNMSMUKZHDEY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "dioxidanidooxidonitrogen" EXACT IUPAC_NAME [IUPAC] +synonym: "HNO(O2)" RELATED [IUPAC] +synonym: "HNO3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/HNO3/c2-1-4-3/h3H" RELATED InChI [ChEBI] +synonym: "peroxynitrous acid" EXACT [IUPAC] +synonym: "peroxynitrous acid" EXACT [ChEBI] +xref: CAS:14691-52-2 "ChemIDplus" +xref: Gmelin:49207 "Gmelin" +is_a: CHEBI:33455 ! nitrogen oxoacid +relationship: is_conjugate_acid_of CHEBI:25941 ! peroxynitrite + +[Term] +id: CHEBI:25944 +name: pesticide +namespace: chebi_ontology +def: "Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests." [] +subset: 3_STAR +synonym: "pesticide" EXACT IUPAC_NAME [IUPAC] +synonym: "pesticides" RELATED [ChEBI] +synonym: "Pestizid" RELATED [ChEBI] +synonym: "Pestizide" RELATED [ChEBI] +xref: Wikipedia:Pesticide +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:26004 +name: phenylpropanoid +namespace: chebi_ontology +def: "Any organic aromatic compound with a structure based on a phenylpropane skeleton. The class includes naturally occurring phenylpropanoid esters, flavonoids, anthocyanins, coumarins and many small phenolic molecules as well as their semi-synthetic and synthetic analogues. Phenylpropanoids are also precursors of lignin." [] +subset: 3_STAR +synonym: "phenylpropanoids" RELATED [ChEBI] +xref: Wikipedia:Phenylpropanoid +is_a: CHEBI:33659 ! organic aromatic compound + +[Term] +id: CHEBI:26020 +name: phosphate +namespace: chebi_ontology +def: "Salts and esters of phosphoric and oligophosphoric acids and their chalcogen analogues. In inorganic chemistry, the term is also used to describe anionic coordination entities with phosphorus as central atom." [] +subset: 3_STAR +synonym: "phosphates" EXACT IUPAC_NAME [IUPAC] +synonym: "phosphates" RELATED [ChEBI] +synonym: "Pi" RELATED [] +is_a: CHEBI:26079 ! phosphoric acid derivative + +[Term] +id: CHEBI:26045 +name: phosphite ion +namespace: chebi_ontology +subset: 1_STAR +synonym: "phosphite ions" RELATED [ChEBI] +is_a: CHEBI:33461 ! phosphorus oxoanion + +[Term] +id: CHEBI:26069 +name: phosphonic acids +namespace: chebi_ontology +def: "HP(=O)(OH)2 (phosphonic acid) and its P-substituted derivatives." [] +subset: 3_STAR +synonym: "phosphonic acids" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:36360 ! phosphorus oxoacids and derivatives + +[Term] +id: CHEBI:26078 +name: phosphoric acid +namespace: chebi_ontology +def: "A phosphorus oxoacid that consits of one oxo and three hydroxy groups joined covalently to a central phosphorus atom." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "97.977" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "97.99520" RELATED MASS [ChEBI] +synonym: "[H]OP(=O)(O[H])O[H]" RELATED SMILES [ChEBI] +synonym: "[PO(OH)3]" RELATED [IUPAC] +synonym: "acide phosphorique" RELATED [ChEBI] +synonym: "acidum phosphoricum" RELATED [ChEBI] +synonym: "H3O4P" RELATED FORMULA [ChEBI] +synonym: "H3PO4" RELATED [IUPAC] +synonym: "InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)" RELATED InChI [ChEBI] +synonym: "NBIIXXVUZAFLBC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Orthophosphoric acid" RELATED [KEGG_COMPOUND] +synonym: "orthophosphoric acid" RELATED [NIST_Chemistry_WebBook] +synonym: "Phosphate" RELATED [KEGG_COMPOUND] +synonym: "Phosphoric acid" EXACT [KEGG_COMPOUND] +synonym: "phosphoric acid" EXACT [IUPAC] +synonym: "Phosphorsaeure" RELATED [ChEBI] +synonym: "Phosphorsaeureloesungen" RELATED [ChEBI] +synonym: "tetraoxophosphoric acid" EXACT IUPAC_NAME [IUPAC] +synonym: "trihydrogen tetraoxophosphate(3-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trihydroxidooxidophosphorus" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:1921286 "Beilstein" +xref: CAS:7664-38-2 "ChemIDplus" +xref: Drug_Central:4478 "DrugCentral" +xref: Gmelin:2000 "Gmelin" +xref: HMDB:HMDB02142 +xref: KEGG:C00009 +xref: KEGG:D05467 +xref: KNApSAcK:C00007408 +xref: PMID:11455380 "Europe PMC" +xref: PMID:15630224 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:17518491 "Europe PMC" +xref: PMID:22282755 "Europe PMC" +xref: PMID:22333268 "Europe PMC" +xref: PMID:22381614 "Europe PMC" +xref: PMID:22401268 "Europe PMC" +xref: Reaxys:1921286 "Reaxys" +xref: Wikipedia:Phosphoric_Acid +is_a: CHEBI:59698 ! phosphoric acids +relationship: has_role CHEBI:33287 ! fertilizer +relationship: has_role CHEBI:46787 ! solvent +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_acid_of CHEBI:39745 ! dihydrogenphosphate + +[Term] +id: CHEBI:26079 +name: phosphoric acid derivative +namespace: chebi_ontology +subset: 1_STAR +synonym: "phosphoric acid derivatives" RELATED [ChEBI] +synonym: "phosphoric acids" RELATED [ChEBI] +is_a: CHEBI:36359 ! phosphorus oxoacid derivative +relationship: has_functional_parent CHEBI:26078 ! phosphoric acid + +[Term] +id: CHEBI:26082 +name: phosphorus molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "phosphorus molecular entities" RELATED [ChEBI] +is_a: CHEBI:33302 ! pnictogen molecular entity +relationship: has_part CHEBI:28659 ! phosphorus atom + +[Term] +id: CHEBI:26144 +name: piperazines +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:25693 ! organic heteromonocyclic compound +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + +[Term] +id: CHEBI:26155 +name: plant growth regulator +namespace: chebi_ontology +def: "A chemical, natural or artificial, that can affect the rate of growth of a plant." [] +subset: 3_STAR +synonym: "plant growth regulators" RELATED [ChEBI] +is_a: CHEBI:39317 ! growth regulator + +[Term] +id: CHEBI:26167 +name: polar amino acid +namespace: chebi_ontology +alt_id: CHEBI:8283 +subset: 1_STAR +synonym: "Polar amino acid" EXACT [KEGG_COMPOUND] +synonym: "polar amino acids" RELATED [ChEBI] +xref: KEGG:C06699 +is_a: CHEBI:33709 ! amino acid + +[Term] +id: CHEBI:26188 +name: polyketide +namespace: chebi_ontology +def: "Natural and synthetic compounds containing alternating carbonyl and methylene groups ('beta-polyketones'), biogenetically derived from repeated condensation of acetyl coenzyme A (via malonyl coenzyme A), and usually the compounds derived from them by further condensations, etc. Considered by many to be synonymous with the less frequently used terms acetogenins and ketides." [] +subset: 3_STAR +synonym: "polyketide" EXACT [ChEBI] +synonym: "polyketides" RELATED [ChEBI] +is_a: CHEBI:36963 ! organooxygen compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:26191 +name: polyol +namespace: chebi_ontology +def: "A compound that contains two or more hydroxy groups." [] +subset: 3_STAR +synonym: "polyols" RELATED [ChEBI] +is_a: CHEBI:33822 ! organic hydroxy compound + +[Term] +id: CHEBI:26195 +name: polyphenol +namespace: chebi_ontology +def: "Members of the class of phenols that contain 2 or more benzene rings each of which is substituted by at least one hydroxy group." [] +subset: 3_STAR +synonym: "polyphenols" RELATED [ChEBI] +xref: colombos:POLYPHENOLS +xref: Wikipedia:Polyphenol +is_a: CHEBI:33853 ! phenols + +[Term] +id: CHEBI:26216 +name: potassium atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "19K" RELATED [IUPAC] +synonym: "38.964" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "39.09830" RELATED MASS [ChEBI] +synonym: "[K]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/K" RELATED InChI [ChEBI] +synonym: "K" RELATED FORMULA [ChEBI] +synonym: "K" RELATED [IUPAC] +synonym: "Kalium" RELATED [ChemIDplus] +synonym: "kalium" RELATED [IUPAC] +synonym: "potasio" RELATED [ChEBI] +synonym: "potassium" EXACT IUPAC_NAME [IUPAC] +synonym: "potassium" RELATED [ChEBI] +synonym: "ZLMJMSJWJFRBEC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7440-09-7 "ChemIDplus" +xref: DrugBank:DB01345 +xref: KEGG:C00238 "ChEBI" +xref: WebElements:K +is_a: CHEBI:22314 ! alkali metal atom +relationship: has_role CHEBI:33937 ! macronutrient +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite + +[Term] +id: CHEBI:26217 +name: potassium molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "potassium molecular entities" RELATED [ChEBI] +synonym: "potassium molecular entity" EXACT [ChEBI] +is_a: CHEBI:33296 ! alkali metal molecular entity +relationship: has_part CHEBI:26216 ! potassium atom + +[Term] +id: CHEBI:26218 +name: potassium salt +namespace: chebi_ontology +def: "Any alkali metal salt having potassium(1+) as the cation." [] +subset: 3_STAR +synonym: "Kaliumsalz" RELATED [ChEBI] +synonym: "Kaliumsalze" RELATED [ChEBI] +synonym: "potassium salts" RELATED [ChEBI] +is_a: CHEBI:26217 ! potassium molecular entity +is_a: CHEBI:35479 ! alkali metal salt +relationship: has_part CHEBI:29103 ! potassium(1+) + +[Term] +id: CHEBI:26271 +name: proline +namespace: chebi_ontology +def: "An alpha-amino acid that is pyrrolidine bearing a carboxy substituent at position 2." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "115.063" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "115.13050" RELATED MASS [ChEBI] +synonym: "C5H9NO2" RELATED FORMULA [ChEBI] +synonym: "DL-Proline" RELATED [KEGG_COMPOUND] +synonym: "Hpro" RELATED [IUPAC] +synonym: "InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)" RELATED InChI [ChEBI] +synonym: "OC(=O)C1CCCN1" RELATED SMILES [ChEBI] +synonym: "ONIBWKKTOPOVIA-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Prolin" RELATED [ChEBI] +synonym: "prolina" RELATED [ChEBI] +synonym: "proline" EXACT [ChEBI] +synonym: "proline" EXACT IUPAC_NAME [IUPAC] +synonym: "pyrrolidine-2-carboxylic acid" RELATED [IUPAC] +xref: Beilstein:80809 "Beilstein" +xref: CAS:609-36-9 "NIST Chemistry WebBook" +xref: colombos:PROLINE +xref: Gmelin:26927 "Gmelin" +xref: KEGG:C16435 +xref: PMID:16534801 "Europe PMC" +xref: PMID:21400017 "Europe PMC" +xref: PMID:21903295 "Europe PMC" +xref: PMID:22264337 "Europe PMC" +xref: PMID:22280966 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: Reaxys:80809 "Reaxys" +xref: Wikipedia:Proline +is_a: CHEBI:33704 ! alpha-amino acid +is_a: CHEBI:38260 ! pyrrolidines +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_conjugate_acid_of CHEBI:32871 ! prolinate +relationship: is_conjugate_base_of CHEBI:32872 ! prolinium + +[Term] +id: CHEBI:26282 +name: propanals +namespace: chebi_ontology +def: "An aldehyde based on a propanal skeleton and its derivatives." [] +subset: 3_STAR +is_a: CHEBI:17478 ! aldehyde + +[Term] +id: CHEBI:26284 +name: propane-1,2-diols +namespace: chebi_ontology +subset: 1_STAR +synonym: "propane-1,2-diols" EXACT [ChEBI] +is_a: CHEBI:26288 ! propanediol + +[Term] +id: CHEBI:26288 +name: propanediol +namespace: chebi_ontology +subset: 1_STAR +synonym: "propanediols" RELATED [ChEBI] +is_a: CHEBI:13643 ! glycol +relationship: MCO:0000858 MCO:0000864 ! sucrose 15% carbon source + +[Term] +id: CHEBI:2634 +name: amidine +namespace: chebi_ontology +def: "Derivatives of oxoacids RnE(=O)OH in which the hydroxy group is replaced by an amino group and the oxo group is replaced by =NR. In organic chemistry an unspecified amidine is commonly a carboxamidine." [] +subset: 3_STAR +synonym: "amidine" EXACT [IUPAC] +synonym: "Amidines" RELATED [KEGG_COMPOUND] +synonym: "amidines" EXACT IUPAC_NAME [IUPAC] +synonym: "amidines" RELATED [ChEBI] +is_a: CHEBI:51143 ! nitrogen molecular entity + +[Term] +id: CHEBI:26348 +name: prosthetic group +namespace: chebi_ontology +def: "A tightly bound, specific nonpolypeptide unit in a protein determining and involved in its biological activity." [] +subset: 3_STAR +synonym: "groupe prosthetique" RELATED [IUPAC] +synonym: "prosthetic group" EXACT IUPAC_NAME [IUPAC] +synonym: "prosthetic groups" RELATED [ChEBI] +is_a: CHEBI:23357 ! cofactor + +[Term] +id: CHEBI:26386 +name: purine nucleobase +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine bases" RELATED [ChEBI] +synonym: "purine nucleobase" EXACT [ChEBI] +synonym: "purine nucleobases" RELATED [ChEBI] +xref: KEGG:C15587 +is_a: CHEBI:18282 ! nucleobase +is_a: CHEBI:26401 ! purines + +[Term] +id: CHEBI:26389 +name: purine deoxyribonucleoside triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine deoxyribonucleoside triphosphates" RELATED [ChEBI] +is_a: CHEBI:16516 ! 2'-deoxyribonucleoside triphosphate +is_a: CHEBI:26393 ! purine nucleoside triphosphate + +[Term] +id: CHEBI:26390 +name: purine 2'-deoxyribonucleotide +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine 2'-deoxyribonucleotides" RELATED [ChEBI] +is_a: CHEBI:19260 ! 2'-deoxyribonucleotide +is_a: CHEBI:26395 ! purine nucleotide + +[Term] +id: CHEBI:26391 +name: purine nucleoside diphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine nucleoside diphosphates" RELATED [ChEBI] +is_a: CHEBI:16862 ! nucleoside diphosphate + +[Term] +id: CHEBI:26392 +name: purine nucleoside monophosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine nucleoside monophosphates" RELATED [ChEBI] +is_a: CHEBI:17188 ! nucleoside 5'-monophosphate + +[Term] +id: CHEBI:26393 +name: purine nucleoside triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine nucleoside triphosphates" RELATED [ChEBI] +is_a: CHEBI:17326 ! nucleoside triphosphate + +[Term] +id: CHEBI:26394 +name: purine nucleoside +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine nucleoside" EXACT [ChEBI] +synonym: "purine nucleosides" RELATED [ChEBI] +is_a: CHEBI:26401 ! purines +is_a: CHEBI:33838 ! nucleoside + +[Term] +id: CHEBI:26395 +name: purine nucleotide +namespace: chebi_ontology +def: "Any nucleotide that has a purine nucleobase." [] +subset: 3_STAR +synonym: "purine nucleotides" RELATED [ChEBI] +is_a: CHEBI:26401 ! purines +is_a: CHEBI:36976 ! nucleotide + +[Term] +id: CHEBI:26396 +name: purine ribonucleoside diphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine ribonucleoside diphosphates" RELATED [ChEBI] +is_a: CHEBI:17668 ! ribonucleoside diphosphate +is_a: CHEBI:26391 ! purine nucleoside diphosphate + +[Term] +id: CHEBI:26397 +name: purine ribonucleoside monophosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine ribonucleoside monophosphates" RELATED [ChEBI] +is_a: CHEBI:26392 ! purine nucleoside monophosphate +is_a: CHEBI:26558 ! ribonucleoside monophosphate + +[Term] +id: CHEBI:26398 +name: purine ribonucleoside triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine ribonucleoside triphosphates" RELATED [ChEBI] +is_a: CHEBI:17972 ! ribonucleoside triphosphate +is_a: CHEBI:26393 ! purine nucleoside triphosphate + +[Term] +id: CHEBI:26399 +name: purine ribonucleoside +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine ribonucleosides" RELATED [ChEBI] +is_a: CHEBI:18254 ! ribonucleoside +is_a: CHEBI:26394 ! purine nucleoside + +[Term] +id: CHEBI:26400 +name: purine ribonucleotide +namespace: chebi_ontology +def: "Any ribonucleotide that has a purine nucleobase." [] +subset: 3_STAR +synonym: "purine ribonucleotides" RELATED [ChEBI] +is_a: CHEBI:26395 ! purine nucleotide +is_a: CHEBI:26561 ! ribonucleotide + +[Term] +id: CHEBI:26401 +name: purines +namespace: chebi_ontology +alt_id: CHEBI:13678 +def: "A class of imidazopyrimidines that consists of purine and its substituted derivatives." [] +subset: 3_STAR +is_a: CHEBI:35875 ! imidazopyrimidine + +[Term] +id: CHEBI:26404 +name: puromycins +namespace: chebi_ontology +subset: 1_STAR +synonym: "puromycins" EXACT [ChEBI] +is_a: CHEBI:22260 ! adenosines +relationship: has_role CHEBI:25605 ! nucleoside antibiotic + +[Term] +id: CHEBI:26421 +name: pyridines +namespace: chebi_ontology +def: "Any organonitrogen heterocyclic compound based on a pyridine skeleton and its substituted derivatives." [] +subset: 3_STAR +is_a: CHEBI:25693 ! organic heteromonocyclic compound +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + +[Term] +id: CHEBI:26432 +name: pyrimidine nucleobase +namespace: chebi_ontology +subset: 3_STAR +synonym: "pyrimidine bases" RELATED [ChEBI] +synonym: "pyrimidine nucleobase" EXACT [ChEBI] +synonym: "pyrimidine nucleobases" RELATED [ChEBI] +is_a: CHEBI:18282 ! nucleobase +is_a: CHEBI:39447 ! pyrimidines + +[Term] +id: CHEBI:26438 +name: pyrimidine nucleoside monophosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "pyrimidine nucleoside monophosphates" RELATED [ChEBI] +is_a: CHEBI:17188 ! nucleoside 5'-monophosphate + +[Term] +id: CHEBI:26439 +name: pyrimidine nucleoside triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "pyrimidine nucleoside triphosphates" RELATED [ChEBI] +is_a: CHEBI:17326 ! nucleoside triphosphate + +[Term] +id: CHEBI:26440 +name: pyrimidine nucleoside +namespace: chebi_ontology +subset: 3_STAR +synonym: "N-D-Ribosylpyrimidine" RELATED [KEGG_COMPOUND] +synonym: "pyrimidine nucleosides" RELATED [ChEBI] +xref: KEGG:C03169 +is_a: CHEBI:33838 ! nucleoside +is_a: CHEBI:39447 ! pyrimidines + +[Term] +id: CHEBI:26441 +name: pyrimidine nucleotide +namespace: chebi_ontology +subset: 3_STAR +synonym: "pyrimidine nucleotides" RELATED [ChEBI] +is_a: CHEBI:36976 ! nucleotide +is_a: CHEBI:39447 ! pyrimidines + +[Term] +id: CHEBI:26443 +name: pyrimidine ribonucleoside monophosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "pyrimidine ribonucleoside monophosphates" RELATED [ChEBI] +is_a: CHEBI:26438 ! pyrimidine nucleoside monophosphate +is_a: CHEBI:26558 ! ribonucleoside monophosphate + +[Term] +id: CHEBI:26444 +name: pyrimidine ribonucleoside triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "pyrimidine ribonucleoside triphosphates" RELATED [ChEBI] +is_a: CHEBI:17972 ! ribonucleoside triphosphate +is_a: CHEBI:26439 ! pyrimidine nucleoside triphosphate + +[Term] +id: CHEBI:26446 +name: pyrimidine ribonucleotide +namespace: chebi_ontology +subset: 3_STAR +synonym: "pyrimidine ribonucleotides" RELATED [ChEBI] +is_a: CHEBI:26441 ! pyrimidine nucleotide +is_a: CHEBI:26561 ! ribonucleotide + +[Term] +id: CHEBI:26455 +name: pyrroles +namespace: chebi_ontology +def: "An azole that includes only one N atom and no other heteroatom as a part of the aromatic skeleton." [] +subset: 3_STAR +is_a: CHEBI:68452 ! azole + +[Term] +id: CHEBI:26463 +name: pyruvate family amino acid +namespace: chebi_ontology +def: "An L-alpha-amino acid which is biosynthesised from pyruvate (i.e. alanine, valine, and leucine). A closed class." [] +subset: 3_STAR +synonym: "pyruvate family amino acids" RELATED [ChEBI] +is_a: CHEBI:15705 ! L-alpha-amino acid +is_a: CHEBI:83813 ! proteinogenic amino acid + +[Term] +id: CHEBI:26469 +name: quaternary nitrogen compound +namespace: chebi_ontology +def: "A nitrogen molecular entity that is electronically neutral but which contains a quaternary nitrogen." [] +subset: 3_STAR +is_a: CHEBI:35352 ! organonitrogen compound +relationship: has_part CHEBI:35267 ! quaternary ammonium ion + +[Term] +id: CHEBI:26512 +name: quinolinemonocarboxylic acid +namespace: chebi_ontology +def: "Any aromatic carboxylic acid that contains a quinoline moiety that is substituted by one carboxy substituent." [] +subset: 3_STAR +synonym: "quinolinemonocarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:26513 ! quinolines +is_a: CHEBI:33859 ! aromatic carboxylic acid +relationship: is_conjugate_acid_of CHEBI:38773 ! quinolinemonocarboxylate + +[Term] +id: CHEBI:26513 +name: quinolines +namespace: chebi_ontology +def: "A class of aromatic heterocyclic compounds each of which contains a benzene ring ortho fused to carbons 2 and 3 of a pyridine ring." [] +subset: 3_STAR +is_a: CHEBI:33659 ! organic aromatic compound +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + +[Term] +id: CHEBI:26519 +name: radical +namespace: chebi_ontology +def: "A molecular entity possessing an unpaired electron." [] +subset: 3_STAR +synonym: "free radical" RELATED [ChEBI] +synonym: "freies Radikal" RELATED [ChEBI] +synonym: "radical" EXACT IUPAC_NAME [IUPAC] +synonym: "radical libre" RELATED [ChEBI] +synonym: "radicales libres" RELATED [ChEBI] +synonym: "radicals" RELATED [IUPAC] +synonym: "Radikal" RELATED [ChEBI] +synonym: "Radikale" RELATED [ChEBI] +is_a: CHEBI:23367 ! molecular entity + +[Term] +id: CHEBI:26523 +name: reactive oxygen species +namespace: chebi_ontology +def: "Molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers." [] +subset: 3_STAR +synonym: "ROS" RELATED [ChEBI] +xref: Wikipedia:Reactive_oxygen_species +is_a: CHEBI:25806 ! oxygen molecular entity + +[Term] +id: CHEBI:26546 +name: rhamnose +namespace: chebi_ontology +def: "A deoxymannose sugar that is the 6-deoxy derivative of hexose." [] +subset: 3_STAR +synonym: "C6H12O5" RELATED FORMULA [ChEBI] +synonym: "ramnose" RELATED [ChEBI] +synonym: "rhamnose" EXACT [UniProt] +xref: PMID:24211429 "Europe PMC" +xref: PMID:24831810 "Europe PMC" +is_a: CHEBI:33983 ! deoxymannose +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76969 ! bacterial metabolite + +[Term] +id: CHEBI:26558 +name: ribonucleoside monophosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ribonucleoside monophosphates" RELATED [ChEBI] +is_a: CHEBI:17188 ! nucleoside 5'-monophosphate +relationship: is_conjugate_acid_of CHEBI:63165 ! ribonucleoside monophosphate oxoanion + +[Term] +id: CHEBI:26561 +name: ribonucleotide +namespace: chebi_ontology +subset: 3_STAR +synonym: "ribonucleotides" RELATED [ChEBI] +is_a: CHEBI:26562 ! ribose phosphate +is_a: CHEBI:36976 ! nucleotide + +[Term] +id: CHEBI:26562 +name: ribose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ribose phosphate" EXACT [ChEBI] +synonym: "ribose phosphates" RELATED [ChEBI] +is_a: CHEBI:25900 ! aldopentose phosphate + +[Term] +id: CHEBI:26580 +name: rifamycins +namespace: chebi_ontology +subset: 3_STAR +synonym: "rifamycin" RELATED [ChEBI] +xref: Wikipedia:Rifamycin +is_a: CHEBI:22565 ! ansamycin +is_a: CHEBI:39270 ! naphthofuran + +[Term] +id: CHEBI:26607 +name: saturated fatty acid +namespace: chebi_ontology +def: "Any fatty acid containing no carbon to carbon multiple bonds. Known to produce adverse biological effects when ingested to excess." [] +subset: 3_STAR +synonym: "saturated fatty acid" EXACT [ChEBI] +synonym: "saturated fatty acids" RELATED [ChEBI] +synonym: "SFA" RELATED [ChEBI] +synonym: "SFAs" RELATED [ChEBI] +xref: PMID:16492686 "Europe PMC" +xref: PMID:19763019 "Europe PMC" +xref: PMID:20237329 "Europe PMC" +is_a: CHEBI:35366 ! fatty acid + +[Term] +id: CHEBI:26626 +name: selenites +namespace: chebi_ontology +def: "Salts and esters of selenous acid." [] +subset: 3_STAR +is_a: CHEBI:26628 ! selenium molecular entity +relationship: has_functional_parent CHEBI:26642 ! selenous acid + +[Term] +id: CHEBI:26628 +name: selenium molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "selenium molecular entities" RELATED [ChEBI] +synonym: "selenium molecular entity" EXACT [ChEBI] +is_a: CHEBI:33304 ! chalcogen molecular entity +relationship: has_part CHEBI:27568 ! selenium atom + +[Term] +id: CHEBI:26642 +name: selenous acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "128.97408" RELATED MASS [ChEBI] +synonym: "129.917" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[SeO(OH)2]" RELATED [IUPAC] +synonym: "dihydroxidooxidoselenium" EXACT IUPAC_NAME [IUPAC] +synonym: "H2O3Se" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/H2O3Se/c1-4(2)3/h(H2,1,2,3)" RELATED InChI [ChEBI] +synonym: "MCAHWIHFGHIESP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "O[Se](O)=O" RELATED SMILES [ChEBI] +synonym: "selenige Saeure" RELATED [ChEBI] +synonym: "selenious acid" RELATED [ChemIDplus] +synonym: "selenous acid" EXACT [UniProt] +synonym: "selenous acid" EXACT [ChEBI] +synonym: "selenous acid" EXACT IUPAC_NAME [IUPAC] +xref: CAS:7783-00-8 "ChemIDplus" +xref: Gmelin:25856 "Gmelin" +is_a: CHEBI:33489 ! selenium oxoacid +relationship: is_conjugate_acid_of CHEBI:29924 ! hydrogenselenite + +[Term] +id: CHEBI:26643 +name: aldehydic acid +namespace: chebi_ontology +def: "A monocarboxylic acid derived from any dicarboxylic acid that has a retained name by the formal reduction of one of the carboxy groups to a formyl group. The resulting structure, also known as a semialdehyde, may be named by replacing the ending '...ic acid' of the retained name of the dicarboxylic acid by the ending '...aldehydic acid'. Aldehydic acids therefore contain one carboxy group and one aldehyde group." [] +subset: 3_STAR +synonym: "aldehydic acids" RELATED [ChEBI] +synonym: "semi-aldehyde" RELATED [ChEBI] +synonym: "semi-aldehydes" RELATED [ChEBI] +synonym: "Semialdehyd" RELATED [ChEBI] +synonym: "semialdehyde" RELATED [ChEBI] +synonym: "semialdehydes" RELATED [ChEBI] +is_a: CHEBI:17478 ! aldehyde +is_a: CHEBI:25384 ! monocarboxylic acid +relationship: is_conjugate_acid_of CHEBI:71944 ! aldehydic acid anion + +[Term] +id: CHEBI:26649 +name: serine derivative +namespace: chebi_ontology +def: "An amino acid derivative resulting from reaction of serine at the amino group or the carboxy group, or from the replacement of any hydrogen of serine by a heteroatom. The definition normally excludes peptides containing serine residues." [] +subset: 3_STAR +synonym: "serine derivatives" RELATED [ChEBI] +is_a: CHEBI:83821 ! amino acid derivative +relationship: has_functional_parent CHEBI:17822 ! serine + +[Term] +id: CHEBI:26650 +name: serine family amino acid +namespace: chebi_ontology +def: "An L-alpha-amino acid which is biosynthesised from 3-phosphoglycerate (i.e. serine, glycine, cysteine and homocysteine). A closed class." [] +subset: 3_STAR +synonym: "3-phosphoglycerate family amino acid" RELATED [ChEBI] +synonym: "3-phosphoglycerate family amino acids" RELATED [ChEBI] +synonym: "serine family amino acids" RELATED [ChEBI] +xref: PMID:20709681 "Europe PMC" +is_a: CHEBI:15705 ! L-alpha-amino acid +is_a: CHEBI:83813 ! proteinogenic amino acid + +[Term] +id: CHEBI:26666 +name: short-chain fatty acid +namespace: chebi_ontology +def: "An aliphatic monocarboxylic acid with a chain length of less than C6. If any non-hydrocarbon substituent is present, the compound is not normally regarded as a short-chain fatty acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "30.011" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "CH2OR" RELATED FORMULA [ChEBI] +synonym: "OC([*])=O" RELATED SMILES [ChEBI] +synonym: "SCFA" RELATED [ChEBI] +synonym: "SCFAs" RELATED [ChEBI] +synonym: "short-chain fatty acids" RELATED [ChEBI] +xref: PMID:16633129 "Europe PMC" +xref: PMID:16870803 "Europe PMC" +xref: PMID:18203540 "Europe PMC" +xref: PMID:20148677 "Europe PMC" +is_a: CHEBI:35366 ! fatty acid +relationship: is_conjugate_acid_of CHEBI:58951 ! short-chain fatty acid anion + +[Term] +id: CHEBI:26667 +name: sialic acid +namespace: chebi_ontology +def: "Any of the N-acylneuraminic acids and their esters and other derivatives of the alcoholic hydroxy groups." [] +subset: 3_STAR +synonym: "acide sialique" RELATED [ChEBI] +synonym: "acides sialique" RELATED [ChEBI] +synonym: "sialic acids" RELATED [ChEBI] +synonym: "Sialsaeure" RELATED [ChEBI] +synonym: "Sialsaeuren" RELATED [ChEBI] +is_a: CHEBI:25508 ! neuraminic acids +relationship: is_conjugate_acid_of CHEBI:62944 ! sialic acid anion + +[Term] +id: CHEBI:26672 +name: siderophore +namespace: chebi_ontology +def: "Any of low-molecular-mass iron(III)-chelating compounds produced by microorganisms for the purpose of the transport and sequestration of iron." [] +subset: 3_STAR +synonym: "ferrioxamine" RELATED [ChEBI] +synonym: "ferrioxamines" RELATED [ChEBI] +synonym: "ironophore" RELATED [ChEBI] +synonym: "siderochrome" RELATED [ChEBI] +synonym: "siderochromes" RELATED [ChEBI] +synonym: "siderophore" EXACT IUPAC_NAME [IUPAC] +synonym: "siderophores" RELATED [ChEBI] +is_a: CHEBI:23357 ! cofactor +is_a: CHEBI:24028 ! iron(3+) chelator +is_a: CHEBI:24874 ! iron ionophore + +[Term] +id: CHEBI:26706 +name: sn-glycerol 3-phosphates +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:26707 ! glycerol phosphate + +[Term] +id: CHEBI:26707 +name: glycerol phosphate +namespace: chebi_ontology +subset: 1_STAR +synonym: "glycerol phosphates" RELATED [ChEBI] +is_a: CHEBI:22297 ! alditol phosphate +relationship: has_functional_parent CHEBI:17754 ! glycerol + +[Term] +id: CHEBI:26708 +name: sodium atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "11Na" RELATED [IUPAC] +synonym: "22.98977" RELATED MASS [ChEBI] +synonym: "22.990" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[Na]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/Na" RELATED InChI [ChEBI] +synonym: "KEAYESYHFKHZAL-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Na" RELATED [IUPAC] +synonym: "Na" RELATED FORMULA [ChEBI] +synonym: "Natrium" RELATED [ChemIDplus] +synonym: "natrium" RELATED [IUPAC] +synonym: "sodio" RELATED [ChemIDplus] +synonym: "sodium" EXACT IUPAC_NAME [IUPAC] +synonym: "sodium" RELATED [ChEBI] +xref: CAS:7440-23-5 "ChemIDplus" +xref: Gmelin:16221 "Gmelin" +xref: KEGG:C01330 "ChEBI" +xref: WebElements:Na +is_a: CHEBI:22314 ! alkali metal atom +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite + +[Term] +id: CHEBI:26710 +name: sodium chloride +namespace: chebi_ontology +def: "An inorganic chloride salt having sodium(1+) as the counterion." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "57.959" RELATED MONOISOTOPIC_MASS [NIST_Chemistry_WebBook] +synonym: "58.44247" RELATED MASS [ChEBI] +synonym: "[Na+].[Cl-]" RELATED SMILES [ChEBI] +synonym: "chlorure de sodium" RELATED [ChEBI] +synonym: "ClNa" RELATED FORMULA [NIST_Chemistry_WebBook] +synonym: "cloruro sodico" RELATED [ChEBI] +synonym: "common salt" RELATED [ChemIDplus] +synonym: "FAPWRFPIFSIZLT-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "halite" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/ClH.Na/h1H;/q;+1/p-1" RELATED InChI [ChEBI] +synonym: "Kochsalz" RELATED [ChEBI] +synonym: "NaCl" RELATED [IUPAC] +synonym: "natrii chloridum" RELATED [ChEBI] +synonym: "Natriumchlorid" RELATED [NIST_Chemistry_WebBook] +synonym: "rock salt" RELATED [ChemIDplus] +synonym: "salt" RELATED [ChemIDplus] +synonym: "sodium chloride" EXACT [ChEBI] +synonym: "sodium chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "table salt" RELATED [ChemIDplus] +xref: Beilstein:3534976 "Beilstein" +xref: CAS:7647-14-5 "KEGG COMPOUND" +xref: colombos:NaCl +xref: Gmelin:13673 "Gmelin" +xref: KEGG:C13563 +xref: KEGG:D02056 +xref: MetaCyc:NACL +xref: Reaxys:3534976 "Reaxys" +xref: Wikipedia:Sodium_Chloride +is_a: CHEBI:36093 ! inorganic chloride +is_a: CHEBI:38702 ! inorganic sodium salt + +[Term] +id: CHEBI:26712 +name: sodium molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "sodium compounds" RELATED [ChEBI] +synonym: "sodium molecular entities" RELATED [ChEBI] +is_a: CHEBI:33296 ! alkali metal molecular entity +relationship: has_part CHEBI:26708 ! sodium atom + +[Term] +id: CHEBI:26714 +name: sodium salt +namespace: chebi_ontology +def: "Any alkali metal salt having sodium(1+) as the cation." [] +subset: 3_STAR +synonym: "Natriumsalz" RELATED [ChEBI] +synonym: "Natriumsalze" RELATED [ChEBI] +synonym: "sodium salts" RELATED [ChEBI] +is_a: CHEBI:26712 ! sodium molecular entity +is_a: CHEBI:35479 ! alkali metal salt +relationship: has_part CHEBI:29101 ! sodium(1+) + +[Term] +id: CHEBI:2676 +name: amoxicillin +namespace: chebi_ontology +alt_id: CHEBI:133770 +def: "A penicillin in which the substituent at position 6 of the penam ring is a 2-amino-2-(4-hydroxyphenyl)acetamido group." [] +subset: 3_STAR +synonym: "(2S,5R,6R)-6-{[(2R)-2-amino-2-(4-hydroxyphenyl)acetyl]amino}-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "365.105" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "365.40400" RELATED MASS [ChEBI] +synonym: "6-(p-hydroxy-alpha-aminophenylacetamido)penicillanic acid" RELATED [ChemIDplus] +synonym: "6beta-[(2R)-2-amino-2-(4-hydroxyphenyl)acetamido]-2,2-dimethylpenam-3alpha-carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]12SC(C)(C)[C@@H](N1C(=O)[C@H]2NC(=O)[C@H](N)c1ccc(O)cc1)C(O)=O" RELATED SMILES [ChEBI] +synonym: "alpha-amino-p-hydroxybenzylpenicillin" RELATED [ChemIDplus] +synonym: "Amolin" RELATED BRAND_NAME [DrugBank] +synonym: "Amopenixin" RELATED BRAND_NAME [DrugBank] +synonym: "amoxicilina" RELATED INN [ChemIDplus] +synonym: "Amoxicillin" EXACT [KEGG_COMPOUND] +synonym: "amoxicillin" RELATED INN [KEGG_DRUG] +synonym: "Amoxicillin anhydrous" RELATED [KEGG_COMPOUND] +synonym: "amoxicilline" RELATED INN [ChemIDplus] +synonym: "amoxicillinum" RELATED INN [ChemIDplus] +synonym: "amoxycilin" RELATED [ChEBI] +synonym: "amoxycillin" RELATED [ChemIDplus] +synonym: "AMPC" RELATED BRAND_NAME [DrugBank] +synonym: "AX" RELATED [ChEBI] +synonym: "C16H19N3O5S" RELATED FORMULA [ChEBI] +synonym: "Clamoxyl" RELATED BRAND_NAME [ChemIDplus] +synonym: "InChI=1S/C16H19N3O5S/c1-16(2)11(15(23)24)19-13(22)10(14(19)25-16)18-12(21)9(17)7-3-5-8(20)6-4-7/h3-6,9-11,14,20H,17H2,1-2H3,(H,18,21)(H,23,24)/t9-,10-,11+,14-/m1/s1" RELATED InChI [ChEBI] +synonym: "LSQZJLSUYDQPKJ-NJBDSQKTSA-N" RELATED InChIKey [ChEBI] +synonym: "Moxal" RELATED BRAND_NAME [DrugBank] +synonym: "p-hydroxyampicillin" RELATED [ChemIDplus] +xref: Beilstein:4274654 "Beilstein" +xref: CAS:26787-78-0 "KEGG COMPOUND" +xref: colombos:AMOXICILLIN +xref: Drug_Central:192 "DrugCentral" +xref: DrugBank:DB01060 +xref: HMDB:HMDB15193 +xref: KEGG:C06827 +xref: KEGG:D07452 +xref: LINCS:LSM-5654 +xref: Patent:DE1942693 +xref: Patent:GB1241844 +xref: Patent:GB978178 +xref: Patent:US3192198 +xref: PMID:10930630 "Europe PMC" +xref: PMID:11431418 "Europe PMC" +xref: PMID:11906332 "Europe PMC" +xref: PMID:12569987 "Europe PMC" +xref: PMID:12833570 "Europe PMC" +xref: PMID:12850488 "Europe PMC" +xref: PMID:16033609 "Europe PMC" +xref: PMID:2083978 "Europe PMC" +xref: PMID:24595455 "Europe PMC" +xref: PMID:24631718 "Europe PMC" +xref: PMID:24759068 "Europe PMC" +xref: PMID:25998949 "Europe PMC" +xref: PMID:27731424 "Europe PMC" +xref: Reaxys:4274654 "Reaxys" +xref: Wikipedia:Amoxicillin +is_a: CHEBI:88187 ! penicillin allergen +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: is_conjugate_acid_of CHEBI:51256 ! amoxicillin(1-) + +[Term] +id: CHEBI:26764 +name: steroid hormone +namespace: chebi_ontology +def: "Any steroid that acts as hormone." [] +subset: 3_STAR +synonym: "hormona esteroide" RELATED [ChEBI] +synonym: "hormonas esteroideas" RELATED [ChEBI] +synonym: "hormone steroide" RELATED [ChEBI] +synonym: "hormones steroides" RELATED [ChEBI] +synonym: "steroid hormones" RELATED [ChEBI] +synonym: "Steroidhormon" RELATED [ChEBI] +synonym: "Steroidhormone" RELATED [ChEBI] +is_a: CHEBI:35341 ! steroid +relationship: has_role CHEBI:24621 ! hormone + +[Term] +id: CHEBI:26788 +name: streptomycins +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:22479 ! amino cyclitol glycoside +is_a: CHEBI:22507 ! aminoglycoside antibiotic + +[Term] +id: CHEBI:26806 +name: succinate +namespace: chebi_ontology +def: "A dicarboxylic acid anion obtained by deprotonation of at least one of the carboxy groups of succinic acid." [] +subset: 3_STAR +synonym: "succinate anion" RELATED [ChEBI] +synonym: "succinates" RELATED [ChEBI] +synonym: "succinic acid anion" RELATED [ChEBI] +xref: colombos:SUCCINATE +is_a: CHEBI:35693 ! dicarboxylic acid anion + +[Term] +id: CHEBI:26816 +name: carbohydrate phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "carbohydrate phosphates" RELATED [ChEBI] +is_a: CHEBI:25703 ! organic phosphate +is_a: CHEBI:37734 ! phosphoric ester +is_a: CHEBI:63299 ! carbohydrate derivative + +[Term] +id: CHEBI:26820 +name: sulfates +namespace: chebi_ontology +def: "Salts and esters of sulfuric acid" [] +subset: 3_STAR +synonym: "sulfates" EXACT [ChEBI] +synonym: "sulfuric acid derivative" RELATED [ChEBI] +synonym: "sulphates" RELATED [ChEBI] +is_a: CHEBI:37826 ! sulfuric acid derivative + +[Term] +id: CHEBI:26830 +name: sulfonium compound +namespace: chebi_ontology +subset: 1_STAR +synonym: "sulfonium compounds" RELATED [ChEBI] +is_a: CHEBI:26835 ! sulfur molecular entity + +[Term] +id: CHEBI:26833 +name: sulfur atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "16S" RELATED [IUPAC] +synonym: "31.972" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "32.06600" RELATED MASS [ChEBI] +synonym: "[S]" RELATED SMILES [ChEBI] +synonym: "azufre" RELATED [ChEBI] +synonym: "Elemental sulfur" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/S" RELATED InChI [ChEBI] +synonym: "NINIDFKCEFEMDL-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "S" RELATED [KEGG_COMPOUND] +synonym: "S" RELATED FORMULA [ChEBI] +synonym: "S" RELATED [IUPAC] +synonym: "Schwefel" RELATED [ChEBI] +synonym: "soufre" RELATED [ChEBI] +synonym: "sulfur" EXACT IUPAC_NAME [IUPAC] +synonym: "sulfur" RELATED [ChEBI] +synonym: "sulfur" RELATED [UniProt] +synonym: "sulphur" RELATED [ChEBI] +synonym: "theion" RELATED [IUPAC] +xref: CAS:7704-34-9 "ChemIDplus" +xref: KEGG:C00087 +xref: KEGG:D06527 +xref: WebElements:S +is_a: CHEBI:25585 ! nonmetal atom +is_a: CHEBI:33303 ! chalcogen +relationship: has_role CHEBI:33937 ! macronutrient + +[Term] +id: CHEBI:26834 +name: sulfur-containing amino acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "sulfur-containing amino acids" RELATED [ChEBI] +is_a: CHEBI:33576 ! sulfur-containing carboxylic acid +is_a: CHEBI:33709 ! amino acid +relationship: is_conjugate_acid_of CHEBI:63470 ! sulfur-containing amino-acid anion + +[Term] +id: CHEBI:26835 +name: sulfur molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "sulfur molecular entities" RELATED [ChEBI] +synonym: "sulfur molecular entity" EXACT [ChEBI] +is_a: CHEBI:33304 ! chalcogen molecular entity +relationship: has_part CHEBI:26833 ! sulfur atom + +[Term] +id: CHEBI:26836 +name: sulfuric acid +namespace: chebi_ontology +def: "A sulfur oxoacid that consits of two oxo and two hydroxy groups joined covalently to a central sulfur atom." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "97.967" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "98.07948" RELATED MASS [ChEBI] +synonym: "[H]OS(=O)(=O)O[H]" RELATED SMILES [ChEBI] +synonym: "[S(OH)2O2]" RELATED [MolBase] +synonym: "[SO2(OH)2]" RELATED [IUPAC] +synonym: "Acide sulfurique" RELATED [ChemIDplus] +synonym: "Acido sulfurico" RELATED [ChemIDplus] +synonym: "Acidum sulfuricum" RELATED [ChemIDplus] +synonym: "dihydrogen tetraoxosulfate" EXACT IUPAC_NAME [IUPAC] +synonym: "dihydroxidodioxidosulfur" EXACT IUPAC_NAME [IUPAC] +synonym: "H2O4S" RELATED FORMULA [ChEBI] +synonym: "H2SO4" RELATED [IUPAC] +synonym: "hydrogen tetraoxosulfate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogen tetraoxosulfate(VI)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)" RELATED InChI [ChEBI] +synonym: "QAOWNCQODCNURD-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Schwefelsaeureloesungen" RELATED [ChemIDplus] +synonym: "Sulfuric acid" EXACT [KEGG_COMPOUND] +synonym: "sulfuric acid" EXACT IUPAC_NAME [IUPAC] +synonym: "sulfuric acid" EXACT [ChEBI] +synonym: "sulphuric acid" RELATED [MolBase] +synonym: "tetraoxosulfuric acid" EXACT IUPAC_NAME [IUPAC] +xref: CAS:7664-93-9 "KEGG COMPOUND" +xref: Gmelin:2122 "Gmelin" +xref: KEGG:C00059 +xref: KEGG:D05963 +xref: KNApSAcK:C00007530 +xref: MolBase:4 +xref: PMID:13568755 "Europe PMC" +xref: PMID:16122922 "Europe PMC" +xref: PMID:19397353 "Europe PMC" +xref: PMID:22047659 "Europe PMC" +xref: PMID:22136045 "Europe PMC" +xref: PMID:22204399 "Europe PMC" +xref: PMID:22267186 "Europe PMC" +xref: PMID:22296037 "Europe PMC" +xref: PMID:22364556 "Europe PMC" +xref: PMID:22435616 "Europe PMC" +xref: Reaxys:2037554 "Reaxys" +xref: Wikipedia:Sulfuric_acid +is_a: CHEBI:33402 ! sulfur oxoacid +relationship: has_role CHEBI:35223 ! catalyst +relationship: is_conjugate_acid_of CHEBI:45696 ! hydrogensulfate + +[Term] +id: CHEBI:26848 +name: tannin +namespace: chebi_ontology +def: "Any of a group of astringent polyphenolic vegetable principles or compounds, chiefly complex glucosides of catechol and pyrogallol." [] +subset: 3_STAR +synonym: "tannins" RELATED [ChEBI] +xref: colombos:TANNINE +xref: Wikipedia:Tannin +is_a: CHEBI:26195 ! polyphenol +relationship: has_role CHEBI:74783 ! astringent + +[Term] +id: CHEBI:26849 +name: tartaric acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "(2R,3R)-rel-2,3-dihydroxybutanedioic acid" RELATED [ChemIDplus] +synonym: "(2RS,3RS)-tartaric acid" RELATED [ChemIDplus] +synonym: "(R*,R*)-(+-)-2,3-dihydroxybutanedioic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "(R*,R*)-2,3-dihydroxybutanedioic acid" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.08684" RELATED MASS [ChEBI] +synonym: "acide tartrique" RELATED [ChEBI] +synonym: "acido tartarico" RELATED [ChEBI] +synonym: "C4H6O6" RELATED FORMULA [ChEBI] +synonym: "DL-tartaric acid" RELATED [ChemIDplus] +synonym: "dl-tartaric acid" RELATED [NIST_Chemistry_WebBook] +synonym: "para-Weinsaeure" RELATED [ChEBI] +synonym: "paratartaric acid" RELATED [NIST_Chemistry_WebBook] +synonym: "racemic acid" RELATED [ChemIDplus] +synonym: "racemic tartaric acid" RELATED [ChemIDplus] +synonym: "racemische Weinsaeure" RELATED [ChEBI] +synonym: "rel-(2R,3R)-2,3-dihydroxybutanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "resolvable tartaric acid" RELATED [NIST_Chemistry_WebBook] +synonym: "Traubensaeure" RELATED [ChemIDplus] +synonym: "uvic acid" RELATED [ChemIDplus] +synonym: "Vogesensaeure" RELATED [ChEBI] +xref: Beilstein:1725148 "Beilstein" +xref: Beilstein:6270431 "Beilstein" +xref: CAS:133-37-9 "NIST Chemistry WebBook" +xref: Gmelin:82691 "Gmelin" +xref: PMID:24507823 "Europe PMC" +xref: PMID:24556732 "Europe PMC" +xref: YMDB:YMDB01788 +is_a: CHEBI:15674 ! 2,3-dihydroxybutanedioic acid +relationship: is_conjugate_acid_of CHEBI:35397 ! tartrate(1-) + +[Term] +id: CHEBI:26873 +name: terpenoid +namespace: chebi_ontology +def: "Any isoprenoid that is a natural product or related compound formally derived from isoprene units. Terpenoids may contain oxygen in various functional groups. This class is subdivided according to the number of carbon atoms in the parent terpene. The skeleton of terpenoids may differ from strict additivity of isoprene units by the loss or shift of a fragment, generally a methyl group." [] +subset: 3_STAR +synonym: "Terpenoid" EXACT [ChEBI] +synonym: "terpenoide" RELATED [IUPAC] +synonym: "terpenoides" RELATED [IUPAC] +synonym: "terpenoids" EXACT IUPAC_NAME [IUPAC] +xref: Wikipedia:Terpenoid +is_a: CHEBI:24913 ! isoprenoid +relationship: has_parent_hydride CHEBI:35186 ! terpene + +[Term] +id: CHEBI:26895 +name: tetracyclines +namespace: chebi_ontology +def: "A subclass of polyketides having an octahydrotetracene-2-carboxamide skeleton, substituted with many hydroxy and other groups." [] +subset: 3_STAR +is_a: CHEBI:26188 ! polyketide +relationship: has_parent_hydride CHEBI:32600 ! tetracene +relationship: has_role CHEBI:25212 ! metabolite + +[Term] +id: CHEBI:26912 +name: oxolanes +namespace: chebi_ontology +def: "Any oxacycle having an oxolane (tetrahydrofuran) skeleton." [] +subset: 3_STAR +is_a: CHEBI:25693 ! organic heteromonocyclic compound +is_a: CHEBI:38104 ! oxacycle + +[Term] +id: CHEBI:26933 +name: tetraric acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "tetraric acids" RELATED [ChEBI] +is_a: CHEBI:22290 ! aldaric acid +is_a: CHEBI:66873 ! C4-dicarboxylic acid + +[Term] +id: CHEBI:26948 +name: thiamine +namespace: chebi_ontology +subset: 3_STAR +synonym: "thiamines" RELATED [ChEBI] +is_a: CHEBI:38338 ! aminopyrimidine +is_a: CHEBI:38418 ! 1,3-thiazole +relationship: has_role CHEBI:75769 ! B vitamin + +[Term] +id: CHEBI:26959 +name: thiocarboxylic ester +namespace: chebi_ontology +def: "An ester in which one or both oxygens of an ester group have been replaced by divalent sulfur." [] +subset: 3_STAR +synonym: "thiocarboxylic esters" RELATED [ChEBI] +is_a: CHEBI:33261 ! organosulfur compound +is_a: CHEBI:35701 ! ester + +[Term] +id: CHEBI:26977 +name: thiosulfate +namespace: chebi_ontology +subset: 1_STAR +synonym: "thiosulfates" RELATED [ChEBI] +synonym: "thiosulphate" RELATED [ChEBI] +xref: UM-BBD_compID:c0570 "ChEBI" +is_a: CHEBI:37827 ! thiosulfuric acid derivative + +[Term] +id: CHEBI:26979 +name: organic heterotricyclic compound +namespace: chebi_ontology +def: "An organic tricyclic compound in which at least one of the rings of the tricyclic skeleton contains one or more heteroatoms." [] +subset: 3_STAR +synonym: "heterotricyclic compounds" RELATED [ChEBI] +synonym: "organic heterotricyclic compounds" RELATED [ChEBI] +is_a: CHEBI:36688 ! heterotricyclic compound +is_a: CHEBI:38166 ! organic heteropolycyclic compound +is_a: CHEBI:51959 ! organic tricyclic compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:26986 +name: threonine +namespace: chebi_ontology +def: "An alpha-amino acid in which one of the hydrogens attached to the alpha-carbon of glycine is substituted by a 1-hydroxyethyl group." [] +subset: 3_STAR +synonym: "C4H9NO3" RELATED FORMULA [ChEBI] +synonym: "Threonin" RELATED [ChEBI] +synonym: "threonine" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:8204750 "Beilstein" +xref: CAS:80-68-2 "NIST Chemistry WebBook" +xref: PMID:11379295 "Europe PMC" +xref: PMID:15221503 "Europe PMC" +xref: PMID:22264337 "Europe PMC" +xref: Wikipedia:Threonine +is_a: CHEBI:38263 ! 2-amino-3-hydroxybutanoic acid +relationship: has_part CHEBI:50341 ! 1-hydroxyethyl group +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_conjugate_acid_of CHEBI:32832 ! threoninate +relationship: is_conjugate_base_of CHEBI:32833 ! threoninium + +[Term] +id: CHEBI:26987 +name: threonine derivative +namespace: chebi_ontology +def: "An amino acid derivative resulting from reaction of threonine at the amino group or the carboxy group, or from the replacement of any hydrogen of threonine by a heteroatom. The definition normally excludes peptides containing threonine residues." [] +subset: 3_STAR +synonym: "threonine derivatives" RELATED [ChEBI] +is_a: CHEBI:83821 ! amino acid derivative +relationship: has_functional_parent CHEBI:26986 ! threonine + +[Term] +id: CHEBI:27024 +name: toluenes +namespace: chebi_ontology +def: "Any member of the class of benzenes that is a substituted benzene in which the substituents include one (and only one) methyl group." [] +subset: 3_STAR +is_a: CHEBI:22712 ! benzenes + +[Term] +id: CHEBI:27026 +name: toxin +namespace: chebi_ontology +def: "Poisonous substance produced by a biological organism such as a microbe, animal or plant." [] +subset: 3_STAR +synonym: "toxin" EXACT IUPAC_NAME [IUPAC] +synonym: "toxins" RELATED [ChEBI] +xref: Wikipedia:Toxin +is_a: CHEBI:25212 ! metabolite +is_a: CHEBI:64909 ! poison + +[Term] +id: CHEBI:27027 +name: micronutrient +namespace: chebi_ontology +subset: 1_STAR +synonym: "micronutrients" RELATED [ChEBI] +synonym: "trace elements" RELATED [ChEBI] +is_a: CHEBI:33284 ! nutrient + +[Term] +id: CHEBI:27081 +name: transition element atom +namespace: chebi_ontology +def: "An element whose atom has an incomplete d sub-shell, or which can give rise to cations with an incomplete d sub-shell." [] +subset: 3_STAR +synonym: "metal de transicion" RELATED [ChEBI] +synonym: "metal de transition" RELATED [ChEBI] +synonym: "metales de transicion" RELATED [ChEBI] +synonym: "metaux de transition" RELATED [ChEBI] +synonym: "transition element" EXACT IUPAC_NAME [IUPAC] +synonym: "transition element" RELATED [ChEBI] +synonym: "transition elements" RELATED [ChEBI] +synonym: "transition metal" RELATED [ChEBI] +synonym: "transition metals" RELATED [ChEBI] +synonym: "Uebergangselement" RELATED [ChEBI] +synonym: "Uebergangsmetalle" RELATED [ChEBI] +is_a: CHEBI:33521 ! metal atom + +[Term] +id: CHEBI:27082 +name: trehalose +namespace: chebi_ontology +def: "A disaccharide formed by a (1<->1)-glycosidic bond between two units of D-glucose." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "342.116" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "342.29650" RELATED MASS [ChEBI] +synonym: "C12H22O11" RELATED FORMULA [ChEBI] +synonym: "HDTRYLNUVZCQOY-MFAKQEFJSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C12H22O11/c13-1-3-5(15)7(17)9(19)11(21-3)23-12-10(20)8(18)6(16)4(2-14)22-12/h3-20H,1-2H2/t3-,4-,5-,6-,7+,8+,9-,10-,11?,12?/m1/s1" RELATED InChI [ChEBI] +synonym: "OC[C@H]1OC(OC2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +is_a: CHEBI:131401 ! hexopyranosyl hexopyranoside + +[Term] +id: CHEBI:27084 +name: trehalose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "trehalose phosphates" RELATED [ChEBI] +is_a: CHEBI:23843 ! disaccharide phosphate + +[Term] +id: CHEBI:27092 +name: tricarboxylic acid trianion +namespace: chebi_ontology +subset: 3_STAR +synonym: "tricarboxylate" RELATED [ChEBI] +synonym: "tricarboxylates" RELATED [ChEBI] +synonym: "tricarboxylic acid trianions" RELATED [ChEBI] +is_a: CHEBI:35753 ! tricarboxylic acid anion +is_a: CHEBI:38717 ! carboxylic acid trianion + +[Term] +id: CHEBI:27093 +name: tricarboxylic acid +namespace: chebi_ontology +def: "An oxoacid containing three carboxy groups." [] +subset: 3_STAR +synonym: "C3H3O6R" RELATED FORMULA [ChEBI] +synonym: "Tricarbonsaeure" RELATED [ChEBI] +synonym: "tricarboxylic acids" RELATED [ChEBI] +synonym: "Trikarbonsaeure" RELATED [ChEBI] +xref: Wikipedia:Tricarboxylic_acid +is_a: CHEBI:33575 ! carboxylic acid +relationship: is_conjugate_acid_of CHEBI:35753 ! tricarboxylic acid anion + +[Term] +id: CHEBI:27114 +name: trihydroxy-5beta-cholanic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "C24H40O5" RELATED FORMULA [ChEBI] +synonym: "trihydroxy-5beta-cholanic acids" RELATED [ChEBI] +is_a: CHEBI:24663 ! hydroxy-5beta-cholanic acid + +[Term] +id: CHEBI:27136 +name: triol +namespace: chebi_ontology +def: "A chemical compound containing three hydroxy groups." [] +subset: 3_STAR +synonym: "triols" RELATED [ChEBI] +is_a: CHEBI:26191 ! polyol + +[Term] +id: CHEBI:27137 +name: triose +namespace: chebi_ontology +def: "A monosaccharide containing three carbon atoms, which is important in respiration. Only two trioses occur naturally: the aldotriose glyceraldehyde and the ketotriose dihydroxyacetone." [] +subset: 3_STAR +synonym: "triose" EXACT [ChEBI] +synonym: "trioses" RELATED [ChEBI] +is_a: CHEBI:35381 ! monosaccharide + +[Term] +id: CHEBI:27150 +name: trisaccharide +namespace: chebi_ontology +subset: 3_STAR +synonym: "trisaccharides" RELATED [ChEBI] +xref: Wikipedia:Trisaccharide +is_a: CHEBI:50699 ! oligosaccharide + +[Term] +id: CHEBI:27153 +name: monoatomic trication +namespace: chebi_ontology +subset: 3_STAR +synonym: "+3" RELATED CHARGE [ChEBI] +synonym: "0.00000" RELATED MASS [ChEBI] +synonym: "[*+3]" RELATED SMILES [ChEBI] +synonym: "monoatomic trications" RELATED [ChEBI] +synonym: "trivalent inorganic cations" RELATED [ChEBI] +is_a: CHEBI:25430 ! monoatomic polycation +is_a: CHEBI:64712 ! trivalent inorganic cation + +[Term] +id: CHEBI:27171 +name: organic heterobicyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "heterobicyclic compounds" RELATED [ChEBI] +synonym: "organic heterobicyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33672 ! heterobicyclic compound +is_a: CHEBI:38166 ! organic heteropolycyclic compound + +[Term] +id: CHEBI:27175 +name: tyramines +namespace: chebi_ontology +def: "Aralkylamino compounds which contain a tyramine skeleton." [] +subset: 3_STAR +is_a: CHEBI:33853 ! phenols +is_a: CHEBI:64365 ! aralkylamino compound + +[Term] +id: CHEBI:27207 +name: univalent carboacyl group +namespace: chebi_ontology +def: "A univalent carboacyl group is a group formed by loss of OH from the carboxy group of a carboxylic acid." [] +subset: 3_STAR +synonym: "univalent acyl group" RELATED [ChEBI] +synonym: "univalent carboacyl groups" RELATED [ChEBI] +synonym: "univalent carboxylic acyl groups" RELATED [ChEBI] +is_a: CHEBI:37838 ! carboacyl group + +[Term] +id: CHEBI:27232 +name: uridine 5'-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "uridine 5'-phosphates" RELATED [ChEBI] +is_a: CHEBI:27237 ! uridine phosphate + +[Term] +id: CHEBI:27237 +name: uridine phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "uridine phosphates" RELATED [ChEBI] +is_a: CHEBI:25608 ! nucleoside phosphate +is_a: CHEBI:27242 ! uridines + +[Term] +id: CHEBI:27242 +name: uridines +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:39446 ! pyrimidine ribonucleosides +relationship: has_functional_parent CHEBI:17568 ! uracil + +[Term] +id: CHEBI:27252 +name: uronic acid +namespace: chebi_ontology +def: "A carbohydrate acid formally derived by oxidation to a carboxy group of the terminal -CH2OH group of any aldose or ketose." [] +subset: 3_STAR +synonym: "uronic acid" EXACT [ChEBI] +synonym: "uronic acids" RELATED [ChEBI] +is_a: CHEBI:25384 ! monocarboxylic acid +is_a: CHEBI:33720 ! carbohydrate acid +is_a: CHEBI:35381 ! monosaccharide +relationship: is_conjugate_acid_of CHEBI:33549 ! uronate + +[Term] +id: CHEBI:27311 +name: volatile oil component +namespace: chebi_ontology +def: "Any metabolite that is found naturally as a component of a volatile oil." [] +subset: 3_STAR +synonym: "essential oil component" RELATED [ChEBI] +synonym: "essential oil components" RELATED [ChEBI] +synonym: "ethereal oil component" RELATED [ChEBI] +synonym: "ethereal oil components" RELATED [ChEBI] +synonym: "volatile oil components" RELATED [ChEBI] +xref: Wikipedia:Essential_oil +is_a: CHEBI:25212 ! metabolite + +[Term] +id: CHEBI:27314 +name: water-soluble vitamin +namespace: chebi_ontology +subset: 3_STAR +synonym: "wasserloesliche Vitamine" RELATED [ChEBI] +synonym: "water-soluble vitamins" RELATED [ChEBI] +is_a: CHEBI:33229 ! vitamin + +[Term] +id: CHEBI:27363 +name: zinc atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "30Zn" RELATED [IUPAC] +synonym: "63.929" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "65.39000" RELATED MASS [ChEBI] +synonym: "[Zn]" RELATED SMILES [ChEBI] +synonym: "cinc" RELATED [ChEBI] +synonym: "HCHKCACWOHOZIP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/Zn" RELATED InChI [ChEBI] +synonym: "zinc" EXACT IUPAC_NAME [IUPAC] +synonym: "zinc" RELATED [ChEBI] +synonym: "zincum" RELATED [ChEBI] +synonym: "Zink" RELATED [ChEBI] +synonym: "Zn" RELATED [IUPAC] +synonym: "Zn" RELATED FORMULA [ChEBI] +synonym: "Zn(II)" RELATED [KEGG_COMPOUND] +synonym: "Zn2+" RELATED [KEGG_COMPOUND] +xref: CAS:7440-66-6 "KEGG COMPOUND" +xref: Gmelin:16321 "Gmelin" +xref: KEGG:C00038 +xref: PDBeChem:ZN +xref: WebElements:Zn +is_a: CHEBI:33340 ! zinc group element atom +relationship: has_role CHEBI:27027 ! micronutrient + +[Term] +id: CHEBI:27364 +name: zinc molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "zinc compounds" RELATED [ChEBI] +synonym: "zinc molecular entities" RELATED [ChEBI] +is_a: CHEBI:33673 ! zinc group molecular entity +relationship: has_part CHEBI:27363 ! zinc atom + +[Term] +id: CHEBI:27365 +name: zinc ion +namespace: chebi_ontology +subset: 3_STAR +synonym: "zinc ion" EXACT [ChEBI] +synonym: "zinc ions" RELATED [ChEBI] +is_a: CHEBI:24867 ! monoatomic ion +is_a: CHEBI:37253 ! elemental zinc + +[Term] +id: CHEBI:27369 +name: zwitterion +namespace: chebi_ontology +def: "A neutral compound having formal unit electrical charges of opposite sign on non-adjacent atoms. Sometimes referred to as inner salts, dipolar ions (a misnomer)." [] +subset: 3_STAR +synonym: "compose zwitterionique" RELATED [IUPAC] +synonym: "compuestos zwitterionicos" RELATED [IUPAC] +synonym: "zwitterion" EXACT IUPAC_NAME [IUPAC] +synonym: "zwitteriones" RELATED [IUPAC] +synonym: "zwitterionic compounds" RELATED [IUPAC] +synonym: "zwitterions" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:51151 ! dipolar compound + +[Term] +id: CHEBI:27376 +name: methanesulfonic acid +namespace: chebi_ontology +alt_id: CHEBI:6813 +def: "An alkanesulfonic acid in which the alkyl group directly linked to the sulfo functionality is methyl." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "95.988" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "96.10666" RELATED MASS [ChEBI] +synonym: "AFVFQIVMOAPDHO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "CH4O3S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CS(O)(=O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/CH4O3S/c1-5(2,3)4/h1H3,(H,2,3,4)" RELATED InChI [ChEBI] +synonym: "Methanesulfonic acid" EXACT [KEGG_COMPOUND] +synonym: "methanesulfonic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "Methansulfonsaeure" RELATED [ChEBI] +synonym: "methylsulfonic acid" RELATED [NIST_Chemistry_WebBook] +xref: Beilstein:1446024 "Beilstein" +xref: CAS:75-75-2 "NIST Chemistry WebBook" +xref: Gmelin:1681 "Gmelin" +xref: KEGG:C11145 +xref: MetaCyc:CPD-3746 +xref: PMID:24304088 "Europe PMC" +xref: PMID:24593036 "Europe PMC" +xref: Reaxys:1446024 "Reaxys" +xref: Wikipedia:Methanesulfonic_acid +is_a: CHEBI:47901 ! alkanesulfonic acid +is_a: CHEBI:64708 ! one-carbon compound +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:25224 ! methanesulfonate + +[Term] +id: CHEBI:27405 +name: streptidine +namespace: chebi_ontology +alt_id: CHEBI:26781 +alt_id: CHEBI:9280 +def: "An amino cyclitol that is scyllo-inositol in which the hydroxy groups at positions 1 and 3 are replaced by guanidino groups." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,1'-(2,4,5,6-Tetrahydroxy-1,3-cyclohexylene)diguanidine" RELATED [ChemIDplus] +synonym: "1,1'-[(1R,2s,3S,4R,5r,6S)-2,4,5,6-tetrahydroxycyclohexane-1,3-diyl]diguanidine" EXACT IUPAC_NAME [IUPAC] +synonym: "1,3-diguanidino-2,4,5,6-cyclohexanetetrol" RELATED [ChEBI] +synonym: "262.139" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "262.26630" RELATED MASS [ChEBI] +synonym: "C8H18N6O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C8H18N6O4/c9-7(10)13-1-3(15)2(14-8(11)12)5(17)6(18)4(1)16/h1-6,15-18H,(H4,9,10,13)(H4,11,12,14)/t1-,2+,3-,4+,5-,6-" RELATED InChI [ChEBI] +synonym: "MSXMXWJPFIDEMT-FAEUDGQSSA-N" RELATED InChIKey [ChEBI] +synonym: "N,N'''-[(1R,2s,3S,4R,5r,6S)-2,4,5,6-tetrahydroxycyclohexane-1,3-diyl]diguanidine" EXACT IUPAC_NAME [IUPAC] +synonym: "N,N'-bis(aminoiminomethyl)streptamine" RELATED [ChEBI] +synonym: "N,N'-diamidinostreptamine" RELATED [ChEBI] +synonym: "NC(=N)N[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](NC(N)=N)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "Streptamine, N,N'-bis(aminoiminomethyl)-" RELATED [ChemIDplus] +synonym: "Streptidine" EXACT [KEGG_COMPOUND] +xref: CAS:85-17-6 "KEGG COMPOUND" +xref: KEGG:C00837 +xref: MetaCyc:CPD-10148 +xref: PMID:11642734 "Europe PMC" +xref: PMID:15736038 "Europe PMC" +xref: PMID:16956741 "Europe PMC" +xref: PMID:17011831 "Europe PMC" +xref: PMID:17609790 "Europe PMC" +xref: PMID:6076630 "Europe PMC" +xref: Reaxys:2816623 "Reaxys" +is_a: CHEBI:24436 ! guanidines +is_a: CHEBI:61689 ! amino cyclitol +relationship: has_functional_parent CHEBI:10642 ! scyllo-inositol +relationship: has_role CHEBI:25212 ! metabolite + +[Term] +id: CHEBI:27504 +name: mitomycin C +namespace: chebi_ontology +alt_id: CHEBI:25356 +alt_id: CHEBI:6953 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "334.128" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "334.32720" RELATED MASS [ChEBI] +synonym: "7-Amino-9alpha-methoxymitosane" RELATED [ChemIDplus] +synonym: "[(1aS,8S,8aR,8bS)-6-amino-8a-methoxy-5-methyl-4,7-dioxo-1,1a,2,4,7,8,8a,8b-octahydroazirino[2',3':3,4]pyrrolo[1,2-a]indol-8-yl]methyl carbamate" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]12CN3C4=C([C@@H](COC(N)=O)[C@@]3(OC)[C@@]1([H])N2)C(=O)C(N)=C(C)C4=O" RELATED SMILES [ChEBI] +synonym: "Ametycine" RELATED [ChemIDplus] +synonym: "C15H18N4O5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C15H18N4O5/c1-5-9(16)12(21)8-6(4-24-14(17)22)15(23-2)13-7(18-13)3-19(15)10(8)11(5)20/h6-7,13,18H,3-4,16H2,1-2H3,(H2,17,22)/t6-,7+,13+,15-/m1/s1" RELATED InChI [ChEBI] +synonym: "Mitocin-C" RELATED [ChemIDplus] +synonym: "Mitomycin" RELATED [KEGG_COMPOUND] +synonym: "Mitomycin C" EXACT [KEGG_COMPOUND] +synonym: "MMC" RELATED [ChemIDplus] +synonym: "Mutamycin" RELATED [ChemIDplus] +synonym: "NWIBSHFKIJFRCO-WUDYKRTCSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:3570056 "Beilstein" +xref: CAS:50-07-7 "KEGG COMPOUND" +xref: colombos:MMC +xref: Drug_Central:1819 "DrugCentral" +xref: DrugBank:DB00305 +xref: KEGG:C06681 +xref: KEGG:D00208 +xref: KNApSAcK:C00018668 +xref: LINCS:LSM-6310 +xref: Wikipedia:Mitomycin +is_a: CHEBI:25357 ! mitomycin +relationship: has_role CHEBI:22333 ! alkylating agent +relationship: has_role CHEBI:35610 ! antineoplastic agent + +[Term] +id: CHEBI:27539 +name: isatin +namespace: chebi_ontology +alt_id: CHEBI:24879 +alt_id: CHEBI:43625 +alt_id: CHEBI:5978 +def: "An indoledione that is the 2,3-diketo derivative of indole." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "147.032" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "147.13080" RELATED MASS [ChEBI] +synonym: "1H-indole-2,3-dione" EXACT IUPAC_NAME [IUPAC] +synonym: "C8H5NO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C8H5NO2/c10-7-5-3-1-2-4-6(5)9-8(7)11/h1-4H,(H,9,10,11)" RELATED InChI [ChEBI] +synonym: "indole-2,3-dione" RELATED [NIST_Chemistry_WebBook] +synonym: "ISATIN" EXACT [PDBeChem] +synonym: "Isatin" EXACT [KEGG_COMPOUND] +synonym: "isatin" EXACT [UniProt] +synonym: "JXDYKVIHCLTXOP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "O=C1Nc2ccccc2C1=O" RELATED SMILES [ChEBI] +xref: Beilstein:383659 "Beilstein" +xref: CAS:91-56-5 "KEGG COMPOUND" +xref: colombos:ISTATIN +xref: DrugBank:DB02095 +xref: Gmelin:165206 "Gmelin" +xref: KEGG:C11129 +xref: KNApSAcK:C00026981 +xref: MetaCyc:ISATIN +xref: PDBeChem:ISN +xref: PMID:15876476 "Europe PMC" +xref: PMID:16236622 "Europe PMC" +xref: PMID:1650428 "Europe PMC" +xref: PMID:17330218 "Europe PMC" +xref: PMID:17447419 "Europe PMC" +xref: PMID:19834914 "Europe PMC" +xref: PMID:23744416 "Europe PMC" +xref: PMID:26846278 "Europe PMC" +xref: PMID:9510091 "Europe PMC" +xref: Reaxys:383659 "Reaxys" +xref: Wikipedia:Isatin +is_a: CHEBI:24793 ! indoledione +relationship: has_role CHEBI:38623 ! EC 1.4.3.4 (monoamine oxidase) inhibitor +relationship: has_role CHEBI:76924 ! plant metabolite + +[Term] +id: CHEBI:27563 +name: arsenic atom +namespace: chebi_ontology +alt_id: CHEBI:22630 +alt_id: CHEBI:2845 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "33As" RELATED [IUPAC] +synonym: "74.92160" RELATED MASS [ChEBI] +synonym: "74.922" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[As]" RELATED SMILES [ChEBI] +synonym: "Arsen" RELATED [ChemIDplus] +synonym: "Arsenic" RELATED [KEGG_COMPOUND] +synonym: "arsenic" EXACT IUPAC_NAME [IUPAC] +synonym: "arsenic" RELATED [ChEBI] +synonym: "arsenico" RELATED [ChEBI] +synonym: "arsenicum" RELATED [ChEBI] +synonym: "As" RELATED [KEGG_COMPOUND] +synonym: "As" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/As" RELATED InChI [ChEBI] +synonym: "RQNWIZPPADIBDY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7440-38-2 "KEGG COMPOUND" +xref: KEGG:C06269 +xref: WebElements:As +is_a: CHEBI:137980 ! metalloid atom +is_a: CHEBI:33300 ! pnictogen +relationship: has_role CHEBI:27027 ! micronutrient + +[Term] +id: CHEBI:27568 +name: selenium atom +namespace: chebi_ontology +alt_id: CHEBI:26627 +alt_id: CHEBI:9091 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "34Se" RELATED [IUPAC] +synonym: "78.96000" RELATED MASS [ChEBI] +synonym: "79.917" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "[Se]" RELATED SMILES [ChEBI] +synonym: "BUGBHKTXTAQXES-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/Se" RELATED InChI [ChEBI] +synonym: "Se" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Se" RELATED [IUPAC] +synonym: "Selen" RELATED [ChemIDplus] +synonym: "selenio" RELATED [ChEBI] +synonym: "Selenium" RELATED [KEGG_COMPOUND] +synonym: "selenium" EXACT IUPAC_NAME [IUPAC] +synonym: "selenium" RELATED [ChEBI] +xref: CAS:7782-49-2 "ChemIDplus" +xref: KEGG:C01529 +xref: WebElements:Se +is_a: CHEBI:25585 ! nonmetal atom +is_a: CHEBI:33303 ! chalcogen +relationship: has_role CHEBI:27027 ! micronutrient + +[Term] +id: CHEBI:27594 +name: carbon atom +namespace: chebi_ontology +alt_id: CHEBI:23009 +alt_id: CHEBI:3399 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "12.000" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "12.01070" RELATED MASS [ChEBI] +synonym: "6C" RELATED [IUPAC] +synonym: "[C]" RELATED SMILES [ChEBI] +synonym: "C" RELATED [KEGG_COMPOUND] +synonym: "C" RELATED [IUPAC] +synonym: "C" RELATED FORMULA [ChEBI] +synonym: "Carbon" RELATED [KEGG_COMPOUND] +synonym: "carbon" EXACT IUPAC_NAME [IUPAC] +synonym: "carbon" RELATED [ChEBI] +synonym: "carbone" RELATED [ChEBI] +synonym: "carbonium" RELATED [ChEBI] +synonym: "carbono" RELATED [ChEBI] +synonym: "InChI=1S/C" RELATED InChI [ChEBI] +synonym: "Kohlenstoff" RELATED [ChEBI] +synonym: "OKTJSMMVPCPJKN-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7440-44-0 "KEGG COMPOUND" +xref: KEGG:C06265 +xref: WebElements:C +is_a: CHEBI:25585 ! nonmetal atom +is_a: CHEBI:33306 ! carbon group element atom +relationship: has_role CHEBI:33937 ! macronutrient + +[Term] +id: CHEBI:27612 +name: hydantoin +namespace: chebi_ontology +alt_id: CHEBI:24625 +alt_id: CHEBI:5773 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "100.027" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "100.07614" RELATED MASS [ChEBI] +synonym: "2,4(3H,5H)-imidazoledione" RELATED [NIST_Chemistry_WebBook] +synonym: "2,4-imidazolidinedione" RELATED [NIST_Chemistry_WebBook] +synonym: "C3H4N2O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Glycolylurea" RELATED [KEGG_COMPOUND] +synonym: "Hydantoin" EXACT [KEGG_COMPOUND] +synonym: "imidazole-2,4(3H,5H)-dione" RELATED [ChemIDplus] +synonym: "imidazolidine-2,4-dione" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C3H4N2O2/c6-2-1-4-3(7)5-2/h1H2,(H2,4,5,6,7)" RELATED InChI [ChEBI] +synonym: "O=C1CNC(=O)N1" RELATED SMILES [ChEBI] +synonym: "WJRBRSLFGCUECM-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:110598 "Beilstein" +xref: CAS:461-72-3 "KEGG COMPOUND" +xref: Gmelin:101266 "Gmelin" +xref: KEGG:C05146 +xref: PDBeChem:HYN +is_a: CHEBI:24628 ! imidazolidine-2,4-dione + +[Term] +id: CHEBI:27659 +name: 2-oxo aldehyde +namespace: chebi_ontology +alt_id: CHEBI:1248 +alt_id: CHEBI:13595 +alt_id: CHEBI:19739 +def: "Any aldehyde having an oxo substituent at the 2-position." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-oxo aldehydes" RELATED [ChEBI] +synonym: "2-Oxoaldehyde" RELATED [KEGG_COMPOUND] +synonym: "2-oxoaldehyde" RELATED [UniProt] +synonym: "56.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "72.06270" RELATED MASS [ChEBI] +synonym: "[H]C(=O)C(C)=O" RELATED SMILES [ChEBI] +synonym: "C2HO2R" RELATED FORMULA [ChEBI] +xref: KEGG:C00538 +is_a: CHEBI:24960 ! ketoaldehyde + +[Term] +id: CHEBI:27689 +name: decanoate +namespace: chebi_ontology +alt_id: CHEBI:125804 +alt_id: CHEBI:23570 +def: "A fatty acid anion 10:0 that is the conjugate base of decanoic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "1-nonanecarboxylate" RELATED [ChEBI] +synonym: "171.139" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "171.25670" RELATED MASS [ChEBI] +synonym: "C10H19O2" RELATED FORMULA [ChEBI] +synonym: "caprate" RELATED [ChEBI] +synonym: "caprinate" RELATED [ChEBI] +synonym: "caprynate" RELATED [ChEBI] +synonym: "CCCCCCCCCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "CH3-[CH2]8-COO(-)" RELATED [IUPAC] +synonym: "decanoate" EXACT [UniProt] +synonym: "decanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "decanoic acid anion" RELATED [ChEBI] +synonym: "decoate" RELATED [ChEBI] +synonym: "decylate" RELATED [ChEBI] +synonym: "GHVNFZFCNZKVNT-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C10H20O2/c1-2-3-4-5-6-7-8-9-10(11)12/h2-9H2,1H3,(H,11,12)/p-1" RELATED InChI [ChEBI] +synonym: "n-caprate" RELATED [ChEBI] +synonym: "n-decanoate" RELATED [ChEBI] +synonym: "n-decoate" RELATED [ChEBI] +synonym: "n-decylate" RELATED [ChEBI] +synonym: "nC9H19CO2 anion" RELATED [NIST_Chemistry_WebBook] +xref: Beilstein:3538146 "Beilstein" +xref: Gmelin:330643 "Gmelin" +xref: KEGG:C01571 "ChEBI" +xref: MetaCyc:CPD-3617 +xref: Reaxys:3538146 "Reaxys" +is_a: CHEBI:58954 ! straight-chain saturated fatty acid anion +is_a: CHEBI:59558 ! medium-chain fatty acid anion +is_a: CHEBI:78118 ! fatty acid anion 10:0 +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:30813 ! decanoic acid + +[Term] +id: CHEBI:27744 +name: glyphosate +namespace: chebi_ontology +alt_id: CHEBI:24423 +alt_id: CHEBI:43013 +alt_id: CHEBI:5510 +def: "A phosphonic acid resulting from the formal oxidative coupling of the methyl group of methylphosphonic acid with the amino group of glycine. It is one of the most commonly used herbicdes worldwide, and the only one to target the enzyme 5-enolpyruvyl-3-shikimate phosphate synthase (EPSPS)." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "169.014" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "169.014" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "169.07310" RELATED MASS [ChEBI] +synonym: "C3H8NO5P" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C3H8NO5P" RELATED FORMULA [ChEBI] +synonym: "Glyphosate" EXACT [KEGG_COMPOUND] +synonym: "InChI=1S/C3H8NO5P/c5-3(6)1-4-2-10(7,8)9/h4H,1-2H2,(H,5,6)(H2,7,8,9)" RELATED InChI [ChEBI] +synonym: "N-(phosphonomethyl)glycine" EXACT IUPAC_NAME [IUPAC] +synonym: "OC(=O)CNCP(O)(O)=O" RELATED SMILES [ChEBI] +synonym: "XDDAORKBJWWYJS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:2045054 "Beilstein" +xref: CAS:1071-83-6 "KEGG COMPOUND" +xref: colombos:GLYPHOSATE +xref: DrugBank:DB04539 +xref: Gmelin:279222 "Gmelin" +xref: KEGG:C01705 +xref: PDBeChem:GPF +xref: PDBeChem:GPJ +xref: Pesticides:glyphosate "Alan Wood's Pesticides" +xref: PMID:27758090 "Europe PMC" +xref: PMID:28266132 "Europe PMC" +xref: PMID:28474816 "Europe PMC" +xref: PMID:28643882 "Europe PMC" +xref: PMID:28711546 "Europe PMC" +xref: UM-BBD_compID:c0134 "ChEBI" +xref: Wikipedia:Glyphosate +is_a: CHEBI:24373 ! glycine derivative +is_a: CHEBI:44976 ! phosphonic acid +relationship: has_role CHEBI:20569 ! EC 2.5.1.19 (3-phosphoshikimate 1-carboxyvinyltransferase) inhibitor +relationship: has_role CHEBI:24527 ! herbicide +relationship: has_role CHEBI:33286 ! agrochemical +relationship: is_conjugate_acid_of CHEBI:133673 ! glyphosate(1-) +relationship: is_conjugate_acid_of CHEBI:67052 ! glyphosate(2-) + +[Term] +id: CHEBI:27780 +name: detergent +namespace: chebi_ontology +alt_id: CHEBI:23648 +alt_id: CHEBI:4456 +def: "A surfactant (or a mixture containing one or more surfactants) having cleaning properties in dilute solutions." [] +subset: 3_STAR +synonym: "detergent" EXACT IUPAC_NAME [IUPAC] +synonym: "Detergents" RELATED [KEGG_COMPOUND] +xref: KEGG:C01689 +is_a: CHEBI:33232 ! application +is_a: CHEBI:35195 ! surfactant + +[Term] +id: CHEBI:27869 +name: chloroacetic acid +namespace: chebi_ontology +alt_id: CHEBI:23125 +alt_id: CHEBI:3622 +def: "A chlorocarboxylic acid that is acetic acid carrying a 2-chloro substituent." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-chloro-acetic acid" RELATED [LIPID_MAPS] +synonym: "2-chloro-ethanoic acid" RELATED [LIPID_MAPS] +synonym: "2-chloroacetic acid" RELATED [ChEBI] +synonym: "93.982" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "94.49700" RELATED MASS [ChEBI] +synonym: "Acide chloracetique" RELATED [ChemIDplus] +synonym: "Acide chloroacetique" RELATED [ChemIDplus] +synonym: "Acide monochloracetique" RELATED [ChemIDplus] +synonym: "alpha-chloro-acetic acid" RELATED [ChEBI] +synonym: "C2H3ClO2" RELATED FORMULA [ChEBI] +synonym: "CAA" RELATED [ChEBI] +synonym: "chloracetic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "Chloroacetic acid" EXACT [KEGG_COMPOUND] +synonym: "chloroacetic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "Chloroethanoic acid" RELATED [KEGG_COMPOUND] +synonym: "FOCAUTSVDIKZOP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C2H3ClO2/c3-1-2(4)5/h1H2,(H,4,5)" RELATED InChI [ChEBI] +synonym: "Monochloressigsaeure" RELATED [ChemIDplus] +synonym: "monochloroacetic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "monochloroethanoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "OC(=O)CCl" RELATED SMILES [ChEBI] +xref: CAS:79-11-8 "NIST Chemistry WebBook" +xref: HMDB:HMDB31331 +xref: KEGG:C06755 +xref: KEGG:D07677 +xref: LIPID_MAPS_instance:LMFA01090068 "LIPID MAPS" +xref: MetaCyc:CHLOROACETIC-ACID +xref: PDBeChem:R3W +xref: Pesticides:monochloroacetic%20acid "Alan Wood's Pesticides" +xref: PMID:12359395 "Europe PMC" +xref: PMID:15033542 "Europe PMC" +xref: PMID:16647117 "Europe PMC" +xref: PMID:17490874 "Europe PMC" +xref: PMID:23103613 "Europe PMC" +xref: PMID:25451595 "Europe PMC" +xref: Reaxys:605438 "Reaxys" +is_a: CHEBI:16277 ! haloacetic acid +is_a: CHEBI:36685 ! chlorocarboxylic acid +relationship: has_role CHEBI:22333 ! alkylating agent +relationship: has_role CHEBI:24527 ! herbicide +relationship: is_conjugate_acid_of CHEBI:23123 ! chloroacetate + +[Term] +id: CHEBI:27897 +name: tryptophan +namespace: chebi_ontology +alt_id: CHEBI:27163 +alt_id: CHEBI:9769 +def: "An alpha-amino acid that is alanine bearing an indol-3-yl substituent at position 3." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-amino-3-(1H-indol-3-yl)propanoic acid" RELATED [IUPAC] +synonym: "204.090" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "204.22526" RELATED MASS [ChEBI] +synonym: "alpha-Amino-beta-(3-indolyl)-propionic acid" RELATED [KEGG_COMPOUND] +synonym: "alpha-amino-beta-3-indolepropionic acid" RELATED [ChEBI] +synonym: "beta-3-indolylalanine" RELATED [ChEBI] +synonym: "C11H12N2O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Htrp" RELATED [IUPAC] +synonym: "InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)" RELATED InChI [ChEBI] +synonym: "NC(Cc1c[nH]c2ccccc12)C(O)=O" RELATED SMILES [ChEBI] +synonym: "QIVBCDIJIAJPQS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "triptofano" RELATED [ChEBI] +synonym: "Trp" RELATED [ChEBI] +synonym: "Tryptophan" EXACT [KEGG_COMPOUND] +synonym: "tryptophan" EXACT IUPAC_NAME [IUPAC] +synonym: "tryptophane" RELATED [ChEBI] +synonym: "W" RELATED [ChEBI] +xref: Beilstein:86196 "Beilstein" +xref: CAS:54-12-6 "NIST Chemistry WebBook" +xref: colombos:TRYPTOPHAN +xref: Gmelin:4532 "Gmelin" +xref: KEGG:C00806 +xref: KNApSAcK:C00001396 +xref: LINCS:LSM-36836 +xref: PMID:17439666 "Europe PMC" +xref: PMID:22264337 "Europe PMC" +xref: Reaxys:86196 "Reaxys" +xref: Wikipedia:Tryptophan +is_a: CHEBI:33704 ! alpha-amino acid +is_a: CHEBI:33856 ! aromatic amino acid +is_a: CHEBI:38631 ! aminoalkylindole +relationship: has_part CHEBI:50337 ! 1H-indol-3-ylmethyl group +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_conjugate_acid_of CHEBI:32727 ! tryptophanate +relationship: is_conjugate_base_of CHEBI:32728 ! tryptophanium +relationship: is_tautomer_of CHEBI:64554 ! tryptophan zwitterion + +[Term] +id: CHEBI:27899 +name: cisplatin +namespace: chebi_ontology +alt_id: CHEBI:23314 +alt_id: CHEBI:3722 +def: "A diamminedichloroplatinum compound in which the two ammine ligands and two chloro ligands are oriented in a cis planar configuration around the central platinum ion. An anticancer drug that interacts with, and forms cross-links between, DNA and proteins, it is used as a neoplasm inhibitor to treat solid tumours, primarily of the testis and ovary." [] +subset: 3_STAR +synonym: "(SP-4-2)-diamminedichloridoplatinum" EXACT IUPAC_NAME [IUPAC] +synonym: "(SP-4-2)-diamminedichloroplatinum" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "298.956" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "298.956" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "300.04452" RELATED MASS [ChEBI] +synonym: "[H][N]([H])([H])[Pt](Cl)(Cl)[N]([H])([H])[H]" RELATED SMILES [ChEBI] +synonym: "[PtCl2(NH3)2]" RELATED [KEGG_COMPOUND] +synonym: "Briplatin" RELATED BRAND_NAME [ChemIDplus] +synonym: "CDDP" RELATED [KEGG_COMPOUND] +synonym: "cis-[PtCl2(NH3)2]" RELATED [MolBase] +synonym: "cis-DDP" RELATED [ChemIDplus] +synonym: "cis-diamminedichloridoplatinum(II)" EXACT IUPAC_NAME [IUPAC] +synonym: "cis-diamminedichloroplatinum" RELATED [ChemIDplus] +synonym: "cis-Diamminedichloroplatinum(II)" RELATED [KEGG_COMPOUND] +synonym: "cis-diamminedichloroplatinum(II)" EXACT IUPAC_NAME [IUPAC] +synonym: "cis-diammineplatinum(II) dichloride" RELATED [ChemIDplus] +synonym: "cis-dichlorodiammineplatinum(II)" RELATED [ChemIDplus] +synonym: "cis-platin" RELATED [ChEBI] +synonym: "Cismaplat" RELATED BRAND_NAME [DrugBank] +synonym: "Cisplatin" EXACT [KEGG_COMPOUND] +synonym: "cisplatin" RELATED INN [ChemIDplus] +synonym: "cisplatine" RELATED INN [ChemIDplus] +synonym: "cisplatino" RELATED INN [ChemIDplus] +synonym: "cisplatinum" RELATED INN [ChemIDplus] +synonym: "Cl2H6N2Pt" RELATED FORMULA [ChEBI] +synonym: "H6Cl2N2Pt" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/2ClH.2H3N.Pt/h2*1H;2*1H3;/q;;;;+2/p-2" RELATED InChI [ChEBI] +synonym: "Lederplatin" RELATED BRAND_NAME [DrugBank] +synonym: "LXZZYRPGZAFOLE-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "Neoplatin" RELATED BRAND_NAME [DrugBank] +synonym: "Peyrone's chloride" RELATED [ChemIDplus] +synonym: "Peyrone's salt" RELATED [ChEBI] +synonym: "Platamine" RELATED [DrugBank] +synonym: "Platinex" RELATED BRAND_NAME [DrugBank] +synonym: "Platinol" RELATED BRAND_NAME [KEGG_DRUG] +synonym: "Randa" RELATED BRAND_NAME [DrugBank] +xref: CAS:15663-27-1 "KEGG COMPOUND" +xref: colombos:CISPLATIN +xref: DrugBank:DB00515 +xref: Gmelin:2519 "Gmelin" +xref: HMDB:HMDB14656 +xref: KEGG:C06911 +xref: KEGG:D00275 +xref: MetaCyc:CPD0-1392 +xref: MolBase:25 +xref: Patent:DE2318020 +xref: Patent:DE2329485 +xref: PMID:10883661 "Europe PMC" +xref: PMID:12537968 "Europe PMC" +xref: PMID:12831510 "Europe PMC" +xref: PMID:12935404 "Europe PMC" +xref: PMID:16327988 "Europe PMC" +xref: PMID:18472761 "Europe PMC" +xref: PMID:1855275 "Europe PMC" +xref: PMID:23554447 "Europe PMC" +xref: PMID:23604226 "Europe PMC" +xref: PMID:23651576 "Europe PMC" +xref: Reaxys:11324567 "Reaxys" +xref: Wikipedia:Cisplatin +is_a: CHEBI:51214 ! diamminedichloroplatinum +relationship: has_role CHEBI:22333 ! alkylating agent +relationship: has_role CHEBI:35610 ! antineoplastic agent +relationship: has_role CHEBI:47868 ! photosensitizing agent +relationship: has_role CHEBI:50684 ! cross-linking reagent +relationship: has_role CHEBI:61015 ! nephrotoxin + +[Term] +id: CHEBI:27902 +name: tetracycline +namespace: chebi_ontology +alt_id: CHEBI:26894 +alt_id: CHEBI:45729 +alt_id: CHEBI:9474 +def: "A broad-spectrum polyketide antibiotic produced by the Streptomyces genus of actinobacteria." [] +subset: 3_STAR +synonym: "(4S,4aS,5aS,12aS)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-2-naphthacenecarboxamide" RELATED [ChemIDplus] +synonym: "(4S,4aS,5aS,6S,12aS)-4-(dimethylamino)-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "444.153" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "444.43460" RELATED MASS [ChEBI] +synonym: "[H][C@@]12C[C@@]3([H])C(C(=O)c4c(O)cccc4[C@@]3(C)O)=C(O)[C@]1(O)C(=O)C(C(N)=O)=C(O)[C@H]2N(C)C" RELATED SMILES [ChEBI] +synonym: "Abramycin" RELATED [ChemIDplus] +synonym: "Achromycin" RELATED [ChEBI] +synonym: "Anhydrotetracycline" RELATED [DrugBank] +synonym: "C22H24N2O8" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Deschlorobiomycin" RELATED [ChemIDplus] +synonym: "InChI=1S/C22H24N2O8/c1-21(31)8-5-4-6-11(25)12(8)16(26)13-9(21)7-10-15(24(2)3)17(27)14(20(23)30)19(29)22(10,32)18(13)28/h4-6,9-10,15,25,27-28,31-32H,7H2,1-3H3,(H2,23,30)/t9-,10-,15-,21+,22-/m0/s1" RELATED InChI [ChEBI] +synonym: "Liquamycin" RELATED [ChemIDplus] +synonym: "OFVLGDICTFRJMM-WESIUVDSSA-N" RELATED InChIKey [ChEBI] +synonym: "Tetracyclin" RELATED [ChEBI] +synonym: "TETRACYCLINE" EXACT [PDBeChem] +synonym: "Tetracycline" EXACT [KEGG_COMPOUND] +synonym: "tetracycline" EXACT [ChEBI] +synonym: "tetracycline" RELATED INN [ChemIDplus] +synonym: "tetracyclinum" RELATED INN [ChemIDplus] +synonym: "Tetrazyklin" RELATED [ChEBI] +synonym: "Tsiklomitsin" RELATED [ChemIDplus] +xref: Beilstein:2230417 "Beilstein" +xref: CAS:60-54-8 "KEGG COMPOUND" +xref: colombos:TETRACYCLINE +xref: Drug_Central:2611 "DrugCentral" +xref: DrugBank:DB00759 +xref: Gmelin:1103368 "Gmelin" +xref: KEGG:C06570 +xref: KEGG:D00201 +xref: MetaCyc:CPD0-1414 +xref: Patent:US2699054 +xref: Patent:US2712517 +xref: Patent:US2886595 +xref: Patent:US3005023 +xref: Patent:US3019173 +xref: Patent:US3301899 +xref: PDBeChem:TAC +xref: PMID:11061623 "Europe PMC" +xref: PMID:11550419 "Europe PMC" +xref: PMID:11744940 "Europe PMC" +xref: PMID:12934399 "Europe PMC" +xref: PMID:14585720 "Europe PMC" +xref: PMID:15825421 "Europe PMC" +xref: PMID:15913752 "Europe PMC" +xref: PMID:16443056 "Europe PMC" +xref: PMID:1650428 "Europe PMC" +xref: PMID:16749547 "Europe PMC" +xref: PMID:17251127 "Europe PMC" +xref: PMID:17260506 "Europe PMC" +xref: PMID:18326855 "Europe PMC" +xref: PMID:18406588 "Europe PMC" +xref: PMID:19032078 "Europe PMC" +xref: PMID:19112759 "Europe PMC" +xref: PMID:19136803 "Europe PMC" +xref: PMID:25286144 "Europe PMC" +xref: PMID:26876942 "Europe PMC" +xref: Reaxys:2230417 "Reaxys" +xref: Wikipedia:Tetracycline +is_a: CHEBI:26895 ! tetracyclines +relationship: has_role CHEBI:35820 ! antiprotozoal drug +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: has_role CHEBI:48001 ! protein synthesis inhibitor +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:71392 ! tetracycline(1-) +relationship: is_conjugate_acid_of CHEBI:77932 ! tetracycline zwitterion + +[Term] +id: CHEBI:27933 +name: beta-lactam antibiotic +namespace: chebi_ontology +alt_id: CHEBI:10427 +alt_id: CHEBI:22844 +def: "An organonitrogen heterocyclic antibiotic that contains a beta-lactam ring." [] +subset: 3_STAR +synonym: "beta-Lactam antibiotics" RELATED [KEGG_COMPOUND] +synonym: "beta-lactam antibiotics" RELATED [ChEBI] +xref: KEGG:C03438 +xref: PMID:19254642 "Europe PMC" +xref: PMID:22594007 "Europe PMC" +xref: Wikipedia:Beta-lactam_antibiotic +is_a: CHEBI:25558 ! organonitrogen heterocyclic antibiotic +is_a: CHEBI:35627 ! beta-lactam + +[Term] +id: CHEBI:27955 +name: streptamine +namespace: chebi_ontology +alt_id: CHEBI:26779 +alt_id: CHEBI:9277 +def: "An amino cyclitol consisting of scyllo-inositol with the hydroxy groups at positions 1 and 3 replaced by unsubstituted amino groups." [] +subset: 3_STAR +synonym: "(1R,2r,3S,4R,5s,6S)-4,6-diaminocyclohexane-1,2,3,5-tetrol" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,3-diamino-1,3-dideoxy-scyllo-inositol" EXACT IUPAC_NAME [IUPAC] +synonym: "178.095" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "178.095" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "178.18640" RELATED MASS [ChEBI] +synonym: "ANLMVXSIPASBFL-FAEUDGQSSA-N" RELATED InChIKey [ChEBI] +synonym: "C6H14N2O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C6H14N2O4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H14N2O4/c7-1-3(9)2(8)5(11)6(12)4(1)10/h1-6,9-12H,7-8H2/t1-,2+,3-,4+,5-,6-" RELATED InChI [ChEBI] +synonym: "N[C@H]1[C@H](O)[C@@H](N)[C@H](O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "Streptamine" EXACT [KEGG_COMPOUND] +xref: Beilstein:26714 "Beilstein" +xref: CAS:488-52-8 "KEGG COMPOUND" +xref: KEGG:C01854 +xref: Reaxys:2802452 "Reaxys" +is_a: CHEBI:61689 ! amino cyclitol +relationship: has_functional_parent CHEBI:10642 ! scyllo-inositol + +[Term] +id: CHEBI:27998 +name: tungsten +namespace: chebi_ontology +alt_id: CHEBI:27170 +alt_id: CHEBI:9779 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "183.84000" RELATED MASS [ChEBI] +synonym: "183.951" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "74W" RELATED [IUPAC] +synonym: "[W]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/W" RELATED InChI [ChEBI] +synonym: "Tungsten" EXACT [KEGG_COMPOUND] +synonym: "tungsten" EXACT IUPAC_NAME [IUPAC] +synonym: "tungsten atom" RELATED [ChEBI] +synonym: "tungstene" RELATED [ChEBI] +synonym: "tungsteno" RELATED [ChEBI] +synonym: "volframio" RELATED [ChEBI] +synonym: "W" RELATED FORMULA [KEGG_COMPOUND] +synonym: "W" RELATED [IUPAC] +synonym: "WFKWXMTUELFFGS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Wolfram" RELATED [NIST_Chemistry_WebBook] +synonym: "wolfram" EXACT IUPAC_NAME [IUPAC] +synonym: "wolframio" RELATED [ChEBI] +synonym: "wolframium" RELATED [ChEBI] +xref: CAS:7440-33-7 "KEGG COMPOUND" +xref: Gmelin:16317 "Gmelin" +xref: KEGG:C00753 +xref: PDBeChem:W +xref: WebElements:W +is_a: CHEBI:33350 ! chromium group element atom +relationship: has_role CHEBI:27027 ! micronutrient + +[Term] +id: CHEBI:28024 +name: cyanic acid +namespace: chebi_ontology +alt_id: CHEBI:23422 +alt_id: CHEBI:3968 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "43.006" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "43.02478" RELATED MASS [ChEBI] +synonym: "[C(N)OH]" RELATED [IUPAC] +synonym: "CHNO" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cyanic acid" EXACT [KEGG_COMPOUND] +synonym: "Cyansaeure" RELATED [ChEBI] +synonym: "HOCN" RELATED [IUPAC] +synonym: "hydrogen nitridooxocarbonate" EXACT IUPAC_NAME [IUPAC] +synonym: "hydroxidonitridocarbon" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/CHNO/c2-1-3/h3H" RELATED InChI [ChEBI] +synonym: "nitridooxocarbonic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "OC#N" RELATED SMILES [ChEBI] +synonym: "XLJMAIOERFSOGZ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Zyansaeure" RELATED [ChEBI] +xref: Beilstein:1732479 "Beilstein" +xref: CAS:420-05-3 "NIST Chemistry WebBook" +xref: CAS:71000-82-3 "KEGG COMPOUND" +xref: Gmelin:839 "Gmelin" +xref: KEGG:C01417 +is_a: CHEBI:23423 ! pseudohalogen oxoacid +is_a: CHEBI:64708 ! one-carbon compound +relationship: is_conjugate_acid_of CHEBI:29195 ! cyanate +relationship: is_tautomer_of CHEBI:29202 ! isocyanic acid + +[Term] +id: CHEBI:28044 +name: phenylalanine +namespace: chebi_ontology +alt_id: CHEBI:25984 +alt_id: CHEBI:8089 +def: "An aromatic amino acid that is alanine in which one of the methyl hydrogens is substituted by a phenyl group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "165.079" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "165.18918" RELATED MASS [ChEBI] +synonym: "2-amino-3-phenylpropanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "alpha-Amino-beta-phenylpropionic acid" RELATED [KEGG_COMPOUND] +synonym: "C9H11NO2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "COLNVLDHVKWLRT-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "DL-Phenylalanine" RELATED [KEGG_COMPOUND] +synonym: "F" RELATED [ChEBI] +synonym: "fenilalanina" RELATED [ChEBI] +synonym: "InChI=1S/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12)" RELATED InChI [ChEBI] +synonym: "NC(Cc1ccccc1)C(O)=O" RELATED SMILES [ChEBI] +synonym: "PHE" RELATED [ChEBI] +synonym: "Phenylalanin" RELATED [ChEBI] +synonym: "Phenylalanine" EXACT [KEGG_COMPOUND] +synonym: "phenylalanine" EXACT [ChEBI] +synonym: "phenylalanine" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:1910407 "Beilstein" +xref: CAS:150-30-1 "NIST Chemistry WebBook" +xref: Gmelin:50836 "Gmelin" +xref: KEGG:C02057 +xref: PMID:17439666 "Europe PMC" +xref: PMID:22264337 "Europe PMC" +xref: Reaxys:1910407 "Reaxys" +xref: Wikipedia:Phenylalanine +is_a: CHEBI:33704 ! alpha-amino acid +is_a: CHEBI:33856 ! aromatic amino acid +relationship: has_part CHEBI:22744 ! benzyl group +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_conjugate_acid_of CHEBI:32504 ! phenylalaninate +relationship: is_conjugate_base_of CHEBI:32505 ! phenylalaninium + +[Term] +id: CHEBI:28053 +name: melibiose +namespace: chebi_ontology +alt_id: CHEBI:20943 +alt_id: CHEBI:25182 +alt_id: CHEBI:60170 +alt_id: CHEBI:6733 +def: "A glycosylglucose formed by an alpha-(1->6)-linkage between D-galactose and D-glucose." [] +subset: 3_STAR +synonym: "(Gal)1 (Glc)1" RELATED [KEGG_GLYCAN] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "342.116" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "342.116" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "342.29650" RELATED MASS [ChEBI] +synonym: "6-O-(alpha-D-Galactopyranosyl)-D-glucopyranose" RELATED [KEGG_COMPOUND] +synonym: "6-O-alpha-D-galactopyranosyl-D-glucopyranose" RELATED [IUPAC] +synonym: "alpha-D-Gal-(1->6)-D-Glc" RELATED [ChEBI] +synonym: "alpha-D-galactopyranosyl-(1->6)-D-glucopyranose" EXACT IUPAC_NAME [IUPAC] +synonym: "alpha-D-galactosyl-(1->6)-D-glucose" RELATED [ChEBI] +synonym: "alpha-D-Galp-(1->6)-D-Glcp" RELATED [ChEBI] +synonym: "C12H22O11" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C12H22O11" RELATED FORMULA [ChEBI] +synonym: "D-Melibiose" RELATED [ChemIDplus] +synonym: "D-mellibiose" RELATED [ChEBI] +synonym: "DLRVVLDZNNYCBX-ABXHMFFYSA-N" RELATED InChIKey [ChEBI] +synonym: "Gal-alpha(1,6)Glc" RELATED [ChEBI] +synonym: "InChI=1S/C12H22O11/c13-1-3-5(14)8(17)10(19)12(23-3)21-2-4-6(15)7(16)9(18)11(20)22-4/h3-20H,1-2H2/t3-,4-,5+,6-,7+,8+,9-,10-,11?,12+/m1/s1" RELATED InChI [ChEBI] +synonym: "Melibiose" EXACT [KEGG_COMPOUND] +synonym: "melibiose" EXACT [UniProt] +synonym: "OC[C@H]1O[C@H](OC[C@H]2OC(O)[C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +xref: Beilstein:1292781 "Beilstein" +xref: CAS:585-99-9 "ChemIDplus" +xref: Gmelin:887780 "Gmelin" +xref: HMDB:HMDB00048 +xref: KEGG:C05402 +xref: KEGG:G01275 +xref: KNApSAcK:C00001142 +xref: MetaCyc:MELIBIOSE +xref: PMID:12797744 "Europe PMC" +xref: PMID:17006649 "Europe PMC" +xref: PMID:17724458 "Europe PMC" +xref: PMID:19846069 "Europe PMC" +xref: PMID:19913595 "Europe PMC" +xref: PMID:3290105 "Europe PMC" +xref: PMID:718021 "Europe PMC" +xref: PMID:7524207 "Europe PMC" +xref: Reaxys:1292781 "Reaxys" +xref: Wikipedia:Melibiose +is_a: CHEBI:24405 ! glycosylglucose +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:91139 ! elastin-laminin receptor agonist + +[Term] +id: CHEBI:28077 +name: rifampicin +namespace: chebi_ontology +alt_id: CHEBI:26577 +alt_id: CHEBI:45308 +alt_id: CHEBI:8858 +def: "A member of the class of rifamycins that is a a semisynthetic antibiotic derived from Amycolatopsis rifamycinica (previously known as Amycolatopsis mediterranei and Streptomyces mediterranei)" [] +subset: 3_STAR +synonym: "(7S,9E,11S,12R,13S,14R,15R,16R,17S,18S,19E,21Z)-2,15,17,27,29-pentahydroxy-11-methoxy-3,7,12,14,16,18,22-heptamethyl-26-{(E)-[(4-methylpiperazin-1-yl)imino]methyl}-6,23-dioxo-8,30-dioxa-24-azatetracyclo[23.3.1.1(4,7).0(5,28)]triaconta-1(28),1(29),2,4,9,19,21,25,27-nonaen-13-yl acetate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3-(((4-Methyl-1-piperazinyl)imino)methyl)rifamycin SV" RELATED [ChemIDplus] +synonym: "822.405" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "822.94020" RELATED MASS [ChEBI] +synonym: "C43H58N4O12" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CO[C@H]1\\C=C\\O[C@@]2(C)Oc3c(C)c(O)c4c(O)c(NC(=O)\\C(C)=C/C=C/[C@H](C)[C@H](O)[C@@H](C)[C@@H](O)[C@@H](C)[C@H](OC(C)=O)[C@@H]1C)c(\\C=N\\N1CCN(C)CC1)c(O)c4c3C2=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C43H58N4O12/c1-21-12-11-13-22(2)42(55)45-33-28(20-44-47-17-15-46(9)16-18-47)37(52)30-31(38(33)53)36(51)26(6)40-32(30)41(54)43(8,59-40)57-19-14-29(56-10)23(3)39(58-27(7)48)25(5)35(50)24(4)34(21)49/h11-14,19-21,23-25,29,34-35,39,49-53H,15-18H2,1-10H3,(H,45,55)/b12-11+,19-14+,22-13-,44-20+/t21-,23+,24+,25+,29-,34-,35+,39+,43-/m0/s1" RELATED InChI [ChEBI] +synonym: "JQXXHWHPUNPDRT-WLSIYKJHSA-N" RELATED InChIKey [ChEBI] +synonym: "RFP" RELATED [DrugBank] +synonym: "rifamcin" RELATED [ChEBI] +synonym: "Rifampicin" EXACT [KEGG_COMPOUND] +synonym: "rifampicin" RELATED INN [KEGG_DRUG] +synonym: "rifampicina" RELATED INN [DrugBank] +synonym: "rifampicinum" RELATED INN [DrugBank] +synonym: "Rifampin" RELATED [KEGG_COMPOUND] +xref: Beilstein:5723476 "Beilstein" +xref: CAS:13292-46-1 "KEGG COMPOUND" +xref: colombos:RIFAMPICIN +xref: DrugBank:DB01045 +xref: HMDB:HMDB15179 +xref: KEGG:C06688 +xref: KEGG:D00211 +xref: Patent:NL6509961 +xref: Patent:US3342810 +xref: PDBeChem:RFP +xref: PMID:11600355 "Europe PMC" +xref: PMID:14665784 "Europe PMC" +xref: PMID:14670633 "Europe PMC" +xref: PMID:15331348 "Europe PMC" +xref: PMID:15383168 "Europe PMC" +xref: PMID:15705662 "Europe PMC" +xref: PMID:16159084 "Europe PMC" +xref: PMID:16515773 "Europe PMC" +xref: PMID:17828712 "Europe PMC" +xref: PMID:18332862 "Europe PMC" +xref: PMID:19386087 "Europe PMC" +xref: PMID:19458074 "Europe PMC" +xref: PMID:19723399 "Europe PMC" +xref: PMID:24718527 "Europe PMC" +xref: PMID:26725427 "Europe PMC" +xref: PMID:26819743 "Europe PMC" +xref: PMID:27082586 "Europe PMC" +xref: PMID:27143080 "Europe PMC" +xref: PMID:27182275 "Europe PMC" +xref: PMID:27242224 "Europe PMC" +xref: PMID:27470132 "Europe PMC" +xref: PMID:27569735 "Europe PMC" +xref: PMID:27617596 "Europe PMC" +xref: PMID:27640793 "Europe PMC" +xref: PMID:27755552 "Europe PMC" +xref: PMID:27795624 "Europe PMC" +xref: PMID:27883163 "Europe PMC" +xref: PMID:27965540 "Europe PMC" +xref: PMID:27993874 "Europe PMC" +xref: PMID:28081169 "Europe PMC" +xref: PMID:28118809 "Europe PMC" +xref: PMID:28181840 "Europe PMC" +xref: PMID:28184157 "Europe PMC" +xref: PMID:28207542 "Europe PMC" +xref: PMID:28262820 "Europe PMC" +xref: Reaxys:5723476 "Reaxys" +xref: Wikipedia:Rifampicin +is_a: CHEBI:26580 ! rifamycins +is_a: CHEBI:38532 ! hydrazone +is_a: CHEBI:46847 ! N-iminopiperazine +is_a: CHEBI:46920 ! N-methylpiperazine +is_a: CHEBI:59779 ! cyclic ketal +is_a: CHEBI:72588 ! semisynthetic derivative +relationship: has_role CHEBI:33231 ! antitubercular agent +relationship: has_role CHEBI:35610 ! antineoplastic agent +relationship: has_role CHEBI:35816 ! leprostatic drug +relationship: has_role CHEBI:37416 ! EC 2.7.7.6 (RNA polymerase) inhibitor +relationship: has_role CHEBI:48001 ! protein synthesis inhibitor +relationship: has_role CHEBI:48422 ! angiogenesis inhibitor +relationship: has_role CHEBI:59517 ! DNA synthesis inhibitor +relationship: has_role CHEBI:63726 ! neuroprotective agent +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77318 ! pregnane X receptor agonist +relationship: is_tautomer_of CHEBI:71365 ! rifampicin zwitterion + +[Term] +id: CHEBI:28098 +name: kanamycin B +namespace: chebi_ontology +alt_id: CHEBI:14489 +alt_id: CHEBI:24948 +alt_id: CHEBI:24949 +alt_id: CHEBI:6107 +subset: 3_STAR +synonym: "(1R,2S,3S,4R,6S)-4,6-diamino-3-(3-amino-3-deoxy-alpha-D-glucopyranosyloxy)-2-hydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2'-amino-2'-deoxykanamycin" RELATED [ChemIDplus] +synonym: "483.254" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "483.51390" RELATED MASS [ChEBI] +synonym: "Bekanamycin" RELATED [KEGG_COMPOUND] +synonym: "C18H37N5O10" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C18H37N5O10/c19-2-6-11(26)12(27)9(23)17(30-6)32-15-4(20)1-5(21)16(14(15)29)33-18-13(28)8(22)10(25)7(3-24)31-18/h4-18,24-29H,1-3,19-23H2/t4-,5+,6+,7+,8-,9+,10+,11+,12+,13+,14-,15+,16-,17+,18+/m0/s1" RELATED InChI [ChEBI] +synonym: "Kanamycin B" EXACT [KEGG_COMPOUND] +synonym: "NC[C@H]1O[C@H](O[C@@H]2[C@@H](N)C[C@@H](N)[C@H](O[C@H]3O[C@H](CO)[C@@H](O)[C@H](N)[C@H]3O)[C@H]2O)[C@H](N)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "Nebramycin factor 5" RELATED [KEGG_COMPOUND] +synonym: "Nebramycin V" RELATED [ChemIDplus] +synonym: "O-3-amino-3-deoxy-alpha-D-glucopyranosyl-(1->4)-O-(2,6-diamino-2,6-dideoxy-alpha-D-glucopyranosyl-(1->6))-2-deoxy-D-streptamine" RELATED [ChemIDplus] +synonym: "SKKLOUVUUNMCJE-FQSMHNGLSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:61646 "Beilstein" +xref: CAS:4696-76-8 "KEGG COMPOUND" +xref: Drug_Central:1520 "DrugCentral" +xref: KEGG:C00825 +xref: KEGG:D07497 +xref: KNApSAcK:C00018692 +xref: PDBeChem:9CS +is_a: CHEBI:24951 ! kanamycins +relationship: is_conjugate_base_of CHEBI:58549 ! kanamycin B(5+) + +[Term] +id: CHEBI:28112 +name: nickel atom +namespace: chebi_ontology +alt_id: CHEBI:25515 +alt_id: CHEBI:7552 +def: "Chemical element (nickel group element atom) with atomic number 28." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "28Ni" RELATED [IUPAC] +synonym: "57.935" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "58.69340" RELATED MASS [ChEBI] +synonym: "[Ni]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/Ni" RELATED InChI [ChEBI] +synonym: "Ni" RELATED [IUPAC] +synonym: "Ni" RELATED FORMULA [KEGG_COMPOUND] +synonym: "niccolum" RELATED [ChEBI] +synonym: "Nickel" RELATED [ChEBI] +synonym: "nickel" EXACT IUPAC_NAME [IUPAC] +synonym: "nickel" RELATED [ChEBI] +synonym: "niquel" RELATED [ChEBI] +synonym: "PXHVJJICTQNCMI-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Raney alloy" RELATED [ChemIDplus] +xref: CAS:7440-02-0 "NIST Chemistry WebBook" +xref: Gmelin:16229 "Gmelin" +xref: KEGG:C00291 +xref: PMID:12756270 "Europe PMC" +xref: PMID:14634084 "Europe PMC" +xref: PMID:14734778 "Europe PMC" +xref: PMID:15165199 "Europe PMC" +xref: PMID:19828094 "Europe PMC" +xref: PMID:20477134 "Europe PMC" +xref: PMID:22762130 "Europe PMC" +xref: PMID:23142754 "Europe PMC" +xref: PMID:23317102 "Europe PMC" +xref: PMID:23692032 "Europe PMC" +xref: PMID:23692035 "Europe PMC" +xref: PMID:23723488 "Europe PMC" +xref: PMID:23834453 "Europe PMC" +xref: PMID:23857010 "Europe PMC" +xref: PMID:23895079 "Europe PMC" +xref: PMID:23909687 "Europe PMC" +xref: PMID:9060994 "Europe PMC" +xref: PMID:9886425 "Europe PMC" +xref: Reaxys:4122946 "Reaxys" +xref: WebElements:Ni +xref: Wikipedia:Nickel +is_a: CHEBI:33362 ! nickel group element atom +is_a: CHEBI:88184 ! metal allergen +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:53000 ! epitope + +[Term] +id: CHEBI:28159 +name: D-asparagine +namespace: chebi_ontology +alt_id: CHEBI:20918 +alt_id: CHEBI:4107 +def: "An optically active form of asparagine having D-configuration." [] +subset: 3_STAR +synonym: "(2R)-2,4-diamino-4-oxobutanoic acid" RELATED [IUPAC] +synonym: "(2R)-2-amino-3-carbamoylpropanoic acid" RELATED [JCBN] +synonym: "(R)-2-amino-3-carbamoylpropanoic acid" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "132.053" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "132.11800" RELATED MASS [ChEBI] +synonym: "C4H8N2O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-2-aminosuccinamic acid" RELATED [ChEBI] +synonym: "D-Asparagin" RELATED [ChEBI] +synonym: "D-Asparagine" EXACT [KEGG_COMPOUND] +synonym: "D-asparagine" EXACT IUPAC_NAME [IUPAC] +synonym: "D-aspartic acid beta-amide" RELATED [ChEBI] +synonym: "DCXYFEDJOCDNAF-UWTATZPHSA-N" RELATED InChIKey [ChEBI] +synonym: "DSG" RELATED [PDBeChem] +synonym: "InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H](CC(N)=O)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:1723526 "Beilstein" +xref: CAS:2058-58-4 "KEGG COMPOUND" +xref: DrugBank:DB03943 +xref: Gmelin:101784 "Gmelin" +xref: HMDB:HMDB33780 +xref: KEGG:C01905 +xref: MetaCyc:CPD-3633 +xref: Patent:CN101333175 +xref: PDBeChem:DSG +xref: PMID:767332 "Europe PMC" +xref: Reaxys:1723526 "Reaxys" +xref: YMDB:YMDB00849 +is_a: CHEBI:16733 ! D-alpha-amino acid +is_a: CHEBI:22653 ! asparagine +relationship: is_conjugate_acid_of CHEBI:32656 ! D-asparaginate +relationship: is_conjugate_base_of CHEBI:32657 ! D-asparaginium +relationship: is_enantiomer_of CHEBI:17196 ! L-asparagine +relationship: is_tautomer_of CHEBI:74337 ! D-asparagine zwitterion + +[Term] +id: CHEBI:28163 +name: iron(III) hydroxamate +namespace: chebi_ontology +alt_id: CHEBI:21131 +alt_id: CHEBI:4992 +def: "A complex between iron(III) and three hydroxamic acid groups, used for iron transport." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "232.91700" RELATED MASS [ChEBI] +synonym: "232.937" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[*]C1=[O][Fe]234(ON1)ONC([*])=[O]2.[*]C(NO3)=[O]4" RELATED SMILES [ChEBI] +synonym: "C3H3FeN3O6R3" RELATED FORMULA [ChEBI] +synonym: "Fe(III) hydroxamate" RELATED [ChEBI] +synonym: "Fe(III) hydroxamates" RELATED [ChEBI] +synonym: "Fe(III)hydroxamate" RELATED [KEGG_COMPOUND] +synonym: "Fe(III)hydroxamic acid" RELATED [KEGG_COMPOUND] +synonym: "iron(III) hydroxamates" RELATED [ChEBI] +xref: KEGG:C06227 +is_a: CHEBI:5975 ! iron chelate +relationship: has_part CHEBI:24648 ! hydroxamic acid anion +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite + +[Term] +id: CHEBI:28185 +name: kanamycin C +namespace: chebi_ontology +alt_id: CHEBI:24950 +alt_id: CHEBI:6108 +subset: 3_STAR +synonym: "(1R,2S,3S,4R,6S)-4,6-diamino-3-(3-amino-3-deoxy-alpha-D-glucopyranosyloxy)-2-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "484.238" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "484.49880" RELATED MASS [ChEBI] +synonym: "C18H36N4O11" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C18H36N4O11/c19-4-1-5(20)16(33-18-13(28)8(21)10(25)6(2-23)31-18)14(29)15(4)32-17-9(22)12(27)11(26)7(3-24)30-17/h4-18,23-29H,1-3,19-22H2/t4-,5+,6+,7+,8-,9+,10+,11+,12+,13+,14-,15+,16-,17+,18+/m0/s1" RELATED InChI [ChEBI] +synonym: "Kanamycin C" EXACT [KEGG_COMPOUND] +synonym: "N[C@H]1C[C@@H](N)[C@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](N)[C@H]2O)[C@@H](O)[C@@H]1O[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1N" RELATED SMILES [ChEBI] +synonym: "WZDRWYJKESFZMB-FQSMHNGLSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:61645 "Beilstein" +xref: CAS:2280-32-2 "ChemIDplus" +xref: KEGG:C01823 +xref: KNApSAcK:C00018690 +xref: MetaCyc:CPD-4823 +xref: PDBeChem:KNC +is_a: CHEBI:24951 ! kanamycins +relationship: is_conjugate_base_of CHEBI:72755 ! kanamycin C(4+) + +[Term] +id: CHEBI:28260 +name: galactose +namespace: chebi_ontology +alt_id: CHEBI:24162 +alt_id: CHEBI:33933 +alt_id: CHEBI:5256 +def: "An aldohexose that is the C-4 epimer of glucose." [] +subset: 3_STAR +synonym: "C6H12O6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Gal" RELATED [JCBN] +synonym: "galacto-hexose" EXACT IUPAC_NAME [IUPAC] +synonym: "Galactose" EXACT [KEGG_COMPOUND] +synonym: "galactose" EXACT IUPAC_NAME [IUPAC] +synonym: "Galaktose" RELATED [ChEBI] +xref: CAS:26566-61-0 "NIST Chemistry WebBook" +xref: colombos:GALACTOSE +xref: KEGG:C01582 +xref: Wikipedia:Galactose +is_a: CHEBI:33917 ! aldohexose +relationship: has_role CHEBI:78675 ! fundamental metabolite + +[Term] +id: CHEBI:28262 +name: dimethyl sulfoxide +namespace: chebi_ontology +alt_id: CHEBI:23801 +alt_id: CHEBI:42138 +alt_id: CHEBI:4612 +def: "A 2-carbon sulfoxide in which the sulfur atom has two methyl substituents." [] +subset: 3_STAR +synonym: "(CH3)2SO" RELATED [NIST_Chemistry_WebBook] +synonym: "(methanesulfinyl)methane" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "78.014" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "78.13444" RELATED MASS [ChEBI] +synonym: "C2H6OS" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CS(C)=O" RELATED SMILES [ChEBI] +synonym: "DIMETHYL SULFOXIDE" EXACT [PDBeChem] +synonym: "Dimethyl sulfoxide" EXACT [KEGG_COMPOUND] +synonym: "dimethyl sulfoxide" EXACT [UniProt] +synonym: "dimethyl sulfoxide" EXACT IUPAC_NAME [IUPAC] +synonym: "dimethyl sulfoxide" RELATED INN [ChemIDplus] +synonym: "dimethyl sulfur oxide" RELATED [NIST_Chemistry_WebBook] +synonym: "dimethyl sulphoxide" RELATED [ChemIDplus] +synonym: "dimethyli sulfoxidum" RELATED INN [ChemIDplus] +synonym: "Dimethylsulfoxid" RELATED [ChEBI] +synonym: "dimethylsulfoxyde" RELATED INN [ChemIDplus] +synonym: "dimetil sulfoxido" RELATED INN [ChemIDplus] +synonym: "DMSO" RELATED [KEGG_COMPOUND] +synonym: "dmso" RELATED [IUPAC] +synonym: "IAZDPXIOMUYVGZ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C2H6OS/c1-4(2)3/h1-2H3" RELATED InChI [ChEBI] +synonym: "methylsulfinylmethane" RELATED [ChemIDplus] +synonym: "S(O)Me2" RELATED [ChEBI] +synonym: "sulfinylbis(methane)" RELATED [ChemIDplus] +xref: Beilstein:506008 "Beilstein" +xref: CAS:67-68-5 "KEGG COMPOUND" +xref: colombos:DMSO +xref: Drug_Central:906 "DrugCentral" +xref: DrugBank:DB01093 +xref: Gmelin:1556 "Gmelin" +xref: HMDB:HMDB02151 +xref: KEGG:C11143 +xref: KEGG:D01043 +xref: LINCS:LSM-36361 +xref: PDBeChem:DMS +xref: PMID:11162043 "Europe PMC" +xref: PMID:11350866 "Europe PMC" +xref: PMID:15237653 "Europe PMC" +xref: PMID:15588915 "Europe PMC" +xref: PMID:15868171 "Europe PMC" +xref: PMID:16434015 "Europe PMC" +xref: PMID:19096138 "Europe PMC" +xref: PMID:19382398 "Europe PMC" +xref: PMID:21426213 "Europe PMC" +xref: PMID:22030943 "Europe PMC" +xref: PMID:22722716 "Europe PMC" +xref: PMID:22768202 "Europe PMC" +xref: PMID:22814967 "Europe PMC" +xref: Reaxys:506008 "Reaxys" +xref: UM-BBD_compID:c0236 "UM-BBD" +xref: Wikipedia:Dimethyl_Sulfoxide +is_a: CHEBI:134179 ! volatile organic compound +is_a: CHEBI:22063 ! sulfoxide +relationship: has_role CHEBI:22333 ! alkylating agent +relationship: has_role CHEBI:35481 ! non-narcotic analgesic +relationship: has_role CHEBI:37335 ! MRI contrast agent +relationship: has_role CHEBI:48358 ! polar aprotic solvent +relationship: has_role CHEBI:48578 ! radical scavenger +relationship: has_role CHEBI:50247 ! antidote +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite + +[Term] +id: CHEBI:28300 +name: glutamine +namespace: chebi_ontology +alt_id: CHEBI:24316 +alt_id: CHEBI:5432 +def: "An alpha-amino acid that consists of butyric acid bearing an amino substituent at position 2 and a carbamoyl substituent at position 4." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "146.069" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "146.14458" RELATED MASS [ChEBI] +synonym: "2,5-diamino-5-oxopentanoic acid" RELATED [IUPAC] +synonym: "2-amino-4-carbamoylbutanoic acid" RELATED [JCBN] +synonym: "2-Aminoglutaramic acid" RELATED [KEGG_COMPOUND] +synonym: "C5H10N2O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "glutamic acid gamma-amide" RELATED [ChEBI] +synonym: "Glutamin" RELATED [ChEBI] +synonym: "Glutamine" EXACT [KEGG_COMPOUND] +synonym: "glutamine" EXACT IUPAC_NAME [IUPAC] +synonym: "Glutaminsaeure-5-amid" RELATED [ChEBI] +synonym: "Hgln" RELATED [IUPAC] +synonym: "InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)" RELATED InChI [ChEBI] +synonym: "NC(CCC(N)=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "ZDXPYRJPNDTMRX-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1723795 "Beilstein" +xref: CAS:585-21-7 "ChemIDplus" +xref: CAS:6899-04-3 "ChemIDplus" +xref: colombos:GLUTAMINE +xref: Gmelin:27318 "Gmelin" +xref: KEGG:C00303 +xref: KNApSAcK:C00001359 +xref: Reaxys:1723795 "Reaxys" +xref: Wikipedia:Glutamine +is_a: CHEBI:33704 ! alpha-amino acid +relationship: has_part CHEBI:50331 ! 3-amino-3-oxopropyl group +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:32678 ! glutaminate +relationship: is_conjugate_base_of CHEBI:32679 ! glutaminium + +[Term] +id: CHEBI:28328 +name: D-galactosamine +namespace: chebi_ontology +alt_id: CHEBI:20951 +alt_id: CHEBI:4135 +alt_id: CHEBI:447526 +def: "The D-stereoisomer of galactosamine." [] +subset: 3_STAR +synonym: "C6H13NO5" RELATED FORMULA [KEGG_COMPOUND] +xref: PMID:16530410 "ChEMBL" +xref: PMID:19067146 "Europe PMC" +xref: PMID:6196640 "Europe PMC" +xref: Wikipedia:Galactosamine +is_a: CHEBI:24156 ! galactosamine +relationship: has_role CHEBI:75771 ! mouse metabolite + +[Term] +id: CHEBI:28358 +name: rac-lactic acid +namespace: chebi_ontology +alt_id: CHEBI:24998 +alt_id: CHEBI:6351 +def: "A racemate comprising equimolar amounts of (R)- and (S)-lactic acid." [] +subset: 3_STAR +synonym: "(+-)-2-hydroxypropanoic acid" RELATED [ChEBI] +synonym: "2-Hydroxypropanoic acid" RELATED [KEGG_COMPOUND] +synonym: "2-Hydroxypropionic acid" RELATED [KEGG_COMPOUND] +synonym: "alpha-hydroxypropanoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "alpha-hydroxypropionic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "C3H6O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "E270" RELATED [ChEBI] +synonym: "Lactic acid" RELATED [KEGG_COMPOUND] +synonym: "Milchsaeure" RELATED [ChEBI] +synonym: "rac-2-hydroxypropanoic acid" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:1209341 "Beilstein" +xref: CAS:50-21-5 "KEGG COMPOUND" +xref: DrugBank:DB04398 +xref: KEGG:C01432 +xref: KEGG:D00111 +xref: LIPID_MAPS_instance:LMFA01050002 "LIPID MAPS" +xref: PMID:17190852 "Europe PMC" +xref: Reaxys:1209341 "Reaxys" +xref: Wikipedia:Lactic_acid +is_a: CHEBI:60911 ! racemate +relationship: has_part CHEBI:42111 ! (R)-lactic acid +relationship: has_part CHEBI:422 ! (S)-lactic acid +relationship: has_role CHEBI:64049 ! food acidity regulator +relationship: is_conjugate_acid_of CHEBI:24996 ! lactate + +[Term] +id: CHEBI:28368 +name: novobiocin +namespace: chebi_ontology +alt_id: CHEBI:25597 +alt_id: CHEBI:44505 +alt_id: CHEBI:7644 +def: "A coumarin-derived antibiotic obtained from Streptomyces niveus." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "612.232" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "612.62430" RELATED MASS [ChEBI] +synonym: "C31H36N2O11" RELATED FORMULA [ChEBI] +synonym: "CO[C@@H]1[C@@H](OC(N)=O)[C@@H](O)[C@H](Oc2ccc3c(O)c(NC(=O)c4ccc(O)c(CC=C(C)C)c4)c(=O)oc3c2C)OC1(C)C" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C31H36N2O11/c1-14(2)7-8-16-13-17(9-11-19(16)34)27(37)33-21-22(35)18-10-12-20(15(3)24(18)42-28(21)38)41-29-23(36)25(43-30(32)39)26(40-6)31(4,5)44-29/h7,9-13,23,25-26,29,34-36H,8H2,1-6H3,(H2,32,39)(H,33,37)/t23-,25+,26-,29-/m1/s1" RELATED InChI [ChEBI] +synonym: "N-{7-[(3-O-carbamoyl-6-deoxy-5-methyl-4-O-methyl-beta-D-gulopyranosyl)oxy]-4-hydroxy-8-methyl-2-oxo-2H-chromen-3-yl}-4-hydroxy-3-(3-methylbut-2-en-1-yl)benzamide" RELATED [ChEBI] +synonym: "Novobiocin" EXACT [KEGG_COMPOUND] +synonym: "novobiocina" RELATED INN [DrugBank] +synonym: "novobiocine" RELATED INN [DrugBank] +synonym: "novobiocinum" RELATED INN [DrugBank] +synonym: "YJQPYGGHQPGBLI-KGSXXDOSSA-N" RELATED InChIKey [ChEBI] +xref: CAS:303-81-1 "KEGG COMPOUND" +xref: colombos:NOVOBIOCIN +xref: Drug_Central:1974 "DrugCentral" +xref: DrugBank:DB01051 +xref: HMDB:HMDB15185 +xref: KEGG:C05080 +xref: KNApSAcK:C00002487 +xref: LINCS:LSM-5910 +xref: Patent:WO2012049521 +xref: Patent:WO2012103487 +xref: PDBeChem:NOV +xref: PMID:17132020 "Europe PMC" +xref: PMID:18418407 "Europe PMC" +xref: PMID:19282394 "Europe PMC" +xref: PMID:19762445 "Europe PMC" +xref: PMID:20325309 "Europe PMC" +xref: PMID:21388139 "Europe PMC" +xref: PMID:22897434 "Europe PMC" +xref: PMID:26844397 "Europe PMC" +xref: PMID:26926630 "Europe PMC" +xref: PMID:27829510 "Europe PMC" +xref: PMID:27914946 "Europe PMC" +xref: PMID:28246042 "Europe PMC" +xref: PMID:28316592 "Europe PMC" +xref: PMID:9687383 "Europe PMC" +xref: Reaxys:1445842 "Reaxys" +is_a: CHEBI:23003 ! carbamate ester +is_a: CHEBI:25698 ! ether +is_a: CHEBI:29347 ! monocarboxylic acid amide +is_a: CHEBI:33853 ! phenols +is_a: CHEBI:35313 ! hexoside +is_a: CHEBI:37912 ! hydroxycoumarin +is_a: CHEBI:63367 ! monosaccharide derivative +relationship: has_role CHEBI:33282 ! antibacterial agent +relationship: has_role CHEBI:50750 ! EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor +relationship: has_role CHEBI:62868 ! hepatoprotective agent +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:71339 ! novobiocin(1-) + +[Term] +id: CHEBI:28383 +name: alpha,omega-dicarboxylic acid +namespace: chebi_ontology +alt_id: CHEBI:10197 +alt_id: CHEBI:13780 +alt_id: CHEBI:22361 +subset: 3_STAR +synonym: "alpha(omega)-Dicarboxylic acid" RELATED [KEGG_COMPOUND] +synonym: "alpha,omega-Dicarboxylic acid" EXACT [KEGG_COMPOUND] +synonym: "alpha,omega-dicarboxylic acids" RELATED [ChEBI] +synonym: "alphaomega-dicarboxylic acid" RELATED [UniProt] +xref: KEGG:C04025 +is_a: CHEBI:35692 ! dicarboxylic acid + +[Term] +id: CHEBI:28422 +name: 3-oxohexanoic acid +namespace: chebi_ontology +alt_id: CHEBI:1640 +alt_id: CHEBI:20171 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "130.063" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "130.14180" RELATED MASS [ChEBI] +synonym: "3-Oxohexanoate" RELATED [KEGG_COMPOUND] +synonym: "3-Oxohexanoic acid" EXACT [KEGG_COMPOUND] +synonym: "3-oxohexanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "BDCLDNALSPBWPQ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "C6H10O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CCCC(=O)CC(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C6H10O3/c1-2-3-5(7)4-6(8)9/h2-4H2,1H3,(H,8,9)" RELATED InChI [ChEBI] +xref: KEGG:C02122 +xref: LIPID_MAPS_instance:LMFA01060008 "LIPID MAPS" +is_a: CHEBI:47881 ! 3-oxo monocarboxylic acid +relationship: has_functional_parent CHEBI:30776 ! hexanoic acid + +[Term] +id: CHEBI:28616 +name: carbamic acid +namespace: chebi_ontology +alt_id: CHEBI:22504 +alt_id: CHEBI:23002 +alt_id: CHEBI:3386 +alt_id: CHEBI:44573 +def: "A one-carbon compound that is ammonia in which one of the hydrogens is replaced by a carboxy group. Although carbamic acid derivatives are common, carbamic acid itself has never been synthesised." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "61.016" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "61.04006" RELATED MASS [ChEBI] +synonym: "Aminoameisensaeure" RELATED [ChEBI] +synonym: "Aminoformic acid" RELATED [KEGG_COMPOUND] +synonym: "Carbamate" RELATED [KEGG_COMPOUND] +synonym: "CARBAMIC ACID" EXACT [PDBeChem] +synonym: "Carbamic acid" EXACT [KEGG_COMPOUND] +synonym: "carbamic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "Carbamidsaeure" RELATED [ChEBI] +synonym: "CH3NO2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)" RELATED InChI [ChEBI] +synonym: "KXDHJXZQYSOELW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "NC(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:1734754 "Beilstein" +xref: CAS:463-77-4 "ChemIDplus" +xref: DrugBank:DB04261 +xref: Gmelin:130345 "Gmelin" +xref: KEGG:C01563 +xref: PDBeChem:OUT +xref: Wikipedia:Carbamic_acid +is_a: CHEBI:35352 ! organonitrogen compound +is_a: CHEBI:35605 ! carbon oxoacid +is_a: CHEBI:64708 ! one-carbon compound +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:13941 ! carbamate + +[Term] +id: CHEBI:28631 +name: 3-phenylpropionic acid +namespace: chebi_ontology +alt_id: CHEBI:26002 +alt_id: CHEBI:26005 +alt_id: CHEBI:43112 +alt_id: CHEBI:8103 +def: "A monocarboxylic acid that is propionic acid substituted at position 3 by a phenyl group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.068" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "150.17450" RELATED MASS [ChEBI] +synonym: "3-Phenyl-propionic acid" RELATED [KEGG_COMPOUND] +synonym: "3-Phenylpropanoic acid" RELATED [KEGG_COMPOUND] +synonym: "3-phenylpropanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "3-phenylpropionic acid" EXACT [KEGG_COMPOUND] +synonym: "3-phenylpropionic acid" EXACT [ChemIDplus] +synonym: "3-Phenylpropionsaeure" RELATED [ChEBI] +synonym: "3PP" RELATED [DrugBank] +synonym: "benzenepropanoic acid" RELATED [ChemIDplus] +synonym: "benzenepropionic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "benzylacetic acid" RELATED [ChemIDplus] +synonym: "beta-phenylpropionic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "C9H10O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "dihydrocinnamic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "HYDROCINNAMIC ACID" RELATED [PDBeChem] +synonym: "Hydrozimtsaeure" RELATED [ChEBI] +synonym: "InChI=1S/C9H10O2/c10-9(11)7-6-8-4-2-1-3-5-8/h1-5H,6-7H2,(H,10,11)" RELATED InChI [ChEBI] +synonym: "OC(=O)CCc1ccccc1" RELATED SMILES [ChEBI] +synonym: "Phenylpropanoate" RELATED [KEGG_COMPOUND] +synonym: "XMIIGOLPHOKFCH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:907515 "Beilstein" +xref: CAS:501-52-0 "KEGG COMPOUND" +xref: DrugBank:DB02024 +xref: ECMDB:ECMDB00764 +xref: Gmelin:102198 "Gmelin" +xref: HMDB:HMDB00764 +xref: KEGG:C05629 +xref: MetaCyc:3-PHENYLPROPIONATE +xref: PDBeChem:HCI +xref: PMID:18062653 "Europe PMC" +xref: PMID:20972783 "Europe PMC" +xref: PMID:23470767 "Europe PMC" +xref: PMID:24216280 "Europe PMC" +xref: Reaxys:907515 "Reaxys" +xref: Wikipedia:Phenylpropanoic_acid +is_a: CHEBI:22712 ! benzenes +is_a: CHEBI:25384 ! monocarboxylic acid +relationship: has_functional_parent CHEBI:30768 ! propionic acid +relationship: has_role CHEBI:35718 ! antifungal agent +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:51057 ! 3-phenylpropionate + +[Term] +id: CHEBI:28659 +name: phosphorus atom +namespace: chebi_ontology +alt_id: CHEBI:26080 +alt_id: CHEBI:8168 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "15P" RELATED [IUPAC] +synonym: "30.97376" RELATED MASS [ChEBI] +synonym: "30.974" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[P]" RELATED SMILES [ChEBI] +synonym: "fosforo" RELATED [ChEBI] +synonym: "InChI=1S/P" RELATED InChI [ChEBI] +synonym: "OAICVXFJPJFONN-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "P" RELATED [IUPAC] +synonym: "P" RELATED FORMULA [ChEBI] +synonym: "P" RELATED [KEGG_COMPOUND] +synonym: "Phosphor" RELATED [ChEBI] +synonym: "phosphore" RELATED [ChEBI] +synonym: "Phosphorus" RELATED [KEGG_COMPOUND] +synonym: "phosphorus" EXACT IUPAC_NAME [IUPAC] +synonym: "phosphorus" RELATED [ChEBI] +xref: CAS:7723-14-0 "KEGG COMPOUND" +xref: Gmelin:16235 "Gmelin" +xref: KEGG:C06262 +xref: WebElements:P +is_a: CHEBI:25585 ! nonmetal atom +is_a: CHEBI:33300 ! pnictogen +relationship: has_role CHEBI:33937 ! macronutrient + +[Term] +id: CHEBI:28681 +name: N,N'-diacetylchitobiose +namespace: chebi_ontology +alt_id: CHEBI:3597 +alt_id: CHEBI:701011 +def: "The N,N'-diacetylated derivative of chitobiose, but with no stereodesignation for the anomeric carbon atom." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-(acetylamino)-4-O-[2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl]-2-deoxy-D-glucopyranose" EXACT IUPAC_NAME [IUPAC] +synonym: "424.169" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "424.40040" RELATED MASS [ChEBI] +synonym: "C16H28N2O11" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(=O)N[C@H]1C(O)O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "CDOJPCSDOXYJJF-CBTAGEKQSA-N" RELATED InChIKey [ChEBI] +synonym: "Chitobiose" RELATED [KEGG_COMPOUND] +synonym: "Diacetylchitobiose" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C16H28N2O11/c1-5(21)17-9-13(25)14(8(4-20)27-15(9)26)29-16-10(18-6(2)22)12(24)11(23)7(3-19)28-16/h7-16,19-20,23-26H,3-4H2,1-2H3,(H,17,21)(H,18,22)/t7-,8-,9-,10-,11-,12-,13-,14-,15?,16+/m1/s1" RELATED InChI [ChEBI] +synonym: "N,N'-Diacetylchitobiose" EXACT [KEGG_COMPOUND] +synonym: "N,N'-diacetylchitobiose" EXACT [UniProt] +xref: Beilstein:1443239 "Beilstein" +xref: CAS:35061-50-8 "KEGG COMPOUND" +xref: KEGG:C01674 +xref: KEGG:G10336 +xref: PMID:20056550 "ChEMBL" +is_a: CHEBI:23101 ! N,N'-diacetylchitobioses +relationship: has_functional_parent CHEBI:50675 ! beta-D-glucosaminyl-(1->4)-D-glucosamine +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:28685 +name: molybdenum atom +namespace: chebi_ontology +alt_id: CHEBI:25369 +alt_id: CHEBI:49750 +alt_id: CHEBI:6968 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "42Mo" RELATED [IUPAC] +synonym: "95.94000" RELATED MASS [ChEBI] +synonym: "97.905" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "[Mo]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/Mo" RELATED InChI [ChEBI] +synonym: "Mo" RELATED [IUPAC] +synonym: "Mo" RELATED FORMULA [KEGG_COMPOUND] +synonym: "molibdeno" RELATED [ChEBI] +synonym: "Molybdaen" RELATED [ChEBI] +synonym: "molybdene" RELATED [ChEBI] +synonym: "Molybdenum" RELATED [KEGG_COMPOUND] +synonym: "molybdenum" EXACT IUPAC_NAME [IUPAC] +synonym: "molybdenum" RELATED [ChEBI] +synonym: "ZOKXTWBITQBERF-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7439-98-7 "ChemIDplus" +xref: Gmelin:16205 "Gmelin" +xref: KEGG:C00150 +xref: WebElements:Mo +is_a: CHEBI:33350 ! chromium group element atom +relationship: has_role CHEBI:27027 ! micronutrient + +[Term] +id: CHEBI:28694 +name: copper atom +namespace: chebi_ontology +alt_id: CHEBI:23376 +alt_id: CHEBI:3874 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "29Cu" RELATED [IUPAC] +synonym: "62.930" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "63.54600" RELATED MASS [ChEBI] +synonym: "[Cu]" RELATED SMILES [ChEBI] +synonym: "cobre" RELATED [ChEBI] +synonym: "Copper" RELATED [KEGG_COMPOUND] +synonym: "copper" EXACT IUPAC_NAME [IUPAC] +synonym: "copper" RELATED [ChEBI] +synonym: "Cu" RELATED [ChEBI] +synonym: "Cu" RELATED [IUPAC] +synonym: "Cu" RELATED FORMULA [KEGG_COMPOUND] +synonym: "cuivre" RELATED [ChEBI] +synonym: "cuprum" RELATED [IUPAC] +synonym: "InChI=1S/Cu" RELATED InChI [ChEBI] +synonym: "Kupfer" RELATED [ChEBI] +synonym: "RYGMFSIKBFXOCR-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7440-50-8 "KEGG COMPOUND" +xref: Gmelin:16269 "Gmelin" +xref: KEGG:C00070 +xref: WebElements:Cu +is_a: CHEBI:33366 ! copper group element atom +relationship: has_role CHEBI:27027 ! micronutrient +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite + +[Term] +id: CHEBI:28757 +name: fructose +namespace: chebi_ontology +alt_id: CHEBI:24104 +alt_id: CHEBI:24110 +alt_id: CHEBI:5172 +def: "A ketohexose that is an isomer of glucose." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "180.15588" RELATED MASS [ChEBI] +synonym: "arabino-hex-2-ulose" EXACT IUPAC_NAME [IUPAC] +synonym: "arabino-Hexulose" RELATED [KEGG_COMPOUND] +synonym: "C6H12O6" RELATED FORMULA [ChEBI] +synonym: "Fru" RELATED [JCBN] +synonym: "Fruchtzucker" RELATED [ChEBI] +synonym: "Fructose" EXACT [KEGG_COMPOUND] +synonym: "fructose" EXACT IUPAC_NAME [IUPAC] +synonym: "Fruktose" RELATED [ChEBI] +xref: CAS:30237-26-4 "ChemIDplus" +xref: DrugBank:DB04173 +xref: KEGG:C01496 +xref: Wikipedia:Fructose +is_a: CHEBI:24973 ! ketohexose +relationship: has_role CHEBI:78675 ! fundamental metabolite + +[Term] +id: CHEBI:28800 +name: N-acetylgalactosamine +namespace: chebi_ontology +alt_id: CHEBI:21600 +alt_id: CHEBI:7201 +subset: 3_STAR +synonym: "2-Acetamido-2-deoxygalactose" RELATED [KEGG_COMPOUND] +synonym: "2-acetamido-2-deoxygalactose" EXACT IUPAC_NAME [IUPAC] +synonym: "C8H15NO6" RELATED FORMULA [ChEBI] +synonym: "GalNAc" RELATED [KEGG_COMPOUND] +synonym: "N-Acetylchondrosamine" RELATED [KEGG_COMPOUND] +synonym: "N-Acetylgalactosamine" EXACT [KEGG_COMPOUND] +xref: CAS:1811-31-0 "KEGG COMPOUND" +xref: KEGG:C01074 +is_a: CHEBI:21655 ! N-acylgalactosamine +relationship: has_role CHEBI:75771 ! mouse metabolite + +[Term] +id: CHEBI:28802 +name: flavonols +namespace: chebi_ontology +alt_id: CHEBI:13639 +alt_id: CHEBI:24052 +alt_id: CHEBI:71969 +def: "Any hydroxyflavone in which is the ring hydrogen at position 3 of the heterocyclic ring is replaced by a hydroxy group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "228.993" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "229.16660" RELATED MASS [ChEBI] +synonym: "3-hydroxyflavones" RELATED [ChEBI] +synonym: "a flavonol" RELATED [UniProt] +synonym: "C15HO3R9" RELATED FORMULA [ChEBI] +synonym: "Oc1c(oc2c([*])c([*])c([*])c([*])c2c1=O)-c1c([*])c([*])c([*])c([*])c1[*]" RELATED SMILES [ChEBI] +xref: MetaCyc:Flavonols +xref: Wikipedia:Flavonol +is_a: CHEBI:24698 ! hydroxyflavone +relationship: is_conjugate_acid_of CHEBI:58588 ! flavonol oxoanion + +[Term] +id: CHEBI:28834 +name: deoxycholic acid +namespace: chebi_ontology +alt_id: CHEBI:1687 +alt_id: CHEBI:23616 +alt_id: CHEBI:42317 +def: "A bile acid that is 5beta-cholan-24-oic acid substituted by hydroxy groups at positions 3 and 12 respectively." [] +subset: 3_STAR +synonym: "(3ALPHA,5ALPHA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID" RELATED [PDBeChem] +synonym: "(3alpha,5beta,12alpha)-3,12-dihydroxycholan-24-oic acid" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "392.293" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "392.57200" RELATED MASS [ChEBI] +synonym: "3alpha,12alpha-dihydroxy-5beta-cholan-24-oic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "3alpha,12alpha-Dihydroxy-5beta-cholanic acid" RELATED [KEGG_COMPOUND] +synonym: "7alpha-deoxycholic acid" RELATED [ChemIDplus] +synonym: "[H][C@]12CC[C@@]3([H])[C@]4([H])CC[C@]([H])([C@H](C)CCC(O)=O)[C@@]4(C)[C@@H](O)C[C@]3([H])[C@@]1(C)CC[C@@H](O)C2" RELATED SMILES [ChEBI] +synonym: "C24H40O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Deoxycholic acid" EXACT [KEGG_COMPOUND] +synonym: "desoxycholic acid" RELATED [ChemIDplus] +synonym: "Desoxycholsaeure" RELATED [ChEBI] +synonym: "InChI=1S/C24H40O4/c1-14(4-9-22(27)28)18-7-8-19-17-6-5-15-12-16(25)10-11-23(15,2)20(17)13-21(26)24(18,19)3/h14-21,25-26H,4-13H2,1-3H3,(H,27,28)/t14-,15-,16-,17+,18-,19+,20+,21+,23+,24-/m1/s1" RELATED InChI [ChEBI] +synonym: "KXGVEGMKQFWNSR-LLQZFEROSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:3219882 "ChemIDplus" +xref: CAS:83-44-3 "ChemIDplus" +xref: Drug_Central:4988 "DrugCentral" +xref: DrugBank:DB03619 +xref: Gmelin:670078 "Gmelin" +xref: KEGG:C04483 +xref: KNApSAcK:C00030117 +xref: LINCS:LSM-5529 +xref: LIPID_MAPS_instance:LMST04010040 "LIPID MAPS" +xref: PDBeChem:DXC +is_a: CHEBI:131620 ! C24-steroid +is_a: CHEBI:23775 ! dihydroxy-5beta-cholanic acid +is_a: CHEBI:3098 ! bile acid +relationship: has_role CHEBI:85234 ! human blood serum metabolite +relationship: is_conjugate_acid_of CHEBI:23614 ! deoxycholate + +[Term] +id: CHEBI:28837 +name: octanoic acid +namespace: chebi_ontology +alt_id: CHEBI:25648 +alt_id: CHEBI:3373 +alt_id: CHEBI:44501 +def: "A straight-chain saturated fatty acid that is heptane in which one of the hydrogens of a terminal methyl group has been replaced by a carboxy group. Octanoic acid is also known as caprylic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-heptanecarboxylic acid" RELATED [ChemIDplus] +synonym: "144.115" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "144.21140" RELATED MASS [ChEBI] +synonym: "8:0" RELATED [ChEBI] +synonym: "Acide octanoique" RELATED [ChemIDplus] +synonym: "acide octanoique" RELATED INN [WHO_MedNet] +synonym: "Acido octanoico" RELATED [ChemIDplus] +synonym: "acido octanoico" RELATED INN [WHO_MedNet] +synonym: "Acidum octanocium" RELATED [ChemIDplus] +synonym: "acidum octanoicum" RELATED INN [WHO_MedNet] +synonym: "C8:0" RELATED [ChEBI] +synonym: "C8H16O2" RELATED FORMULA [ChEBI] +synonym: "Caprylic acid" RELATED [KEGG_COMPOUND] +synonym: "CCCCCCCC(O)=O" RELATED SMILES [ChEBI] +synonym: "CH3-[CH2]6-COOH" RELATED [IUPAC] +synonym: "InChI=1S/C8H16O2/c1-2-3-4-5-6-7-8(9)10/h2-7H2,1H3,(H,9,10)" RELATED InChI [ChEBI] +synonym: "Kaprylsaeure" RELATED [ChEBI] +synonym: "n-caprylic acid" RELATED [ChemIDplus] +synonym: "n-octanoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "n-octoic acid" RELATED [ChemIDplus] +synonym: "n-octylic acid" RELATED [ChemIDplus] +synonym: "Octanoic acid" EXACT [KEGG_COMPOUND] +synonym: "octanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "octanoic acid" RELATED INN [WHO_MedNet] +synonym: "OCTANOIC ACID (CAPRYLIC ACID)" RELATED [PDBeChem] +synonym: "Octansaeure" RELATED [ChEBI] +synonym: "octoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "Octylic acid" RELATED [KEGG_COMPOUND] +synonym: "WWZKQHOCKIZLMA-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1747180 "Beilstein" +xref: CAS:124-07-2 "KEGG COMPOUND" +xref: colombos:OCTANOIC_ACID +xref: Drug_Central:3998 "DrugCentral" +xref: DrugBank:DB04519 +xref: Gmelin:142966 "Gmelin" +xref: HMDB:HMDB00482 +xref: KEGG:C06423 +xref: KEGG:D05220 +xref: KNApSAcK:C00001231 +xref: LIPID_MAPS_instance:LMFA01010008 "LIPID MAPS" +xref: MetaCyc:CPD-195 +xref: PDBeChem:OCA +xref: PMID:16162522 "Europe PMC" +xref: PMID:16872526 "Europe PMC" +xref: PMID:19096058 "Europe PMC" +xref: Reaxys:1747180 "Reaxys" +xref: Wikipedia:Caprylic_acid +is_a: CHEBI:39418 ! straight-chain saturated fatty acid +is_a: CHEBI:59554 ! medium-chain fatty acid +relationship: has_role CHEBI:33282 ! antibacterial agent +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:25646 ! octanoate + +[Term] +id: CHEBI:28847 +name: D-fucose +namespace: chebi_ontology +alt_id: CHEBI:20941 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "164.15648" RELATED MASS [ChEBI] +synonym: "6-deoxy-D-galactose" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H12O5" RELATED FORMULA [ChEBI] +synonym: "D-Fuc" RELATED [JCBN] +synonym: "D-fucose" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33984 ! fucose + +[Term] +id: CHEBI:28868 +name: fatty acid anion +namespace: chebi_ontology +alt_id: CHEBI:13634 +alt_id: CHEBI:24022 +alt_id: CHEBI:4985 +def: "The conjugate base of a fatty acid, arising from deprotonation of the carboxylic acid group of the corresponding fatty acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "43.990" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "44.00950" RELATED MASS [ChEBI] +synonym: "[O-]C([*])=O" RELATED SMILES [ChEBI] +synonym: "a fatty acid" RELATED [UniProt] +synonym: "acido graso anionico" RELATED [ChEBI] +synonym: "acidos grasos anionicos" RELATED [ChEBI] +synonym: "Alkanate" RELATED [KEGG_COMPOUND] +synonym: "anion de l'acide gras" RELATED [ChEBI] +synonym: "CO2R" RELATED FORMULA [ChEBI] +synonym: "Fatty acid anion" EXACT [KEGG_COMPOUND] +synonym: "fatty acid anions" RELATED [ChEBI] +synonym: "Fettsaeureanion" RELATED [ChEBI] +synonym: "Fettsaeureanionen" RELATED [ChEBI] +xref: KEGG:C02403 +xref: PMID:18628202 "Europe PMC" +is_a: CHEBI:18059 ! lipid +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:35366 ! fatty acid + +[Term] +id: CHEBI:28869 +name: menadione +namespace: chebi_ontology +alt_id: CHEBI:27304 +alt_id: CHEBI:46306 +alt_id: CHEBI:6747 +def: "A member of the class of 1,4-naphthoquinones that is 1,4-naphthoquinone which is substituted at position 2 by a methyl group. It is used as a nutritional supplement and for the treatment of hypoprothrombinemia." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "172.052" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "172.18002" RELATED MASS [ChEBI] +synonym: "2-methyl-1,4-naphthalenedione" RELATED [ChemIDplus] +synonym: "2-Methyl-1,4-naphthochinon" RELATED [ChemIDplus] +synonym: "2-Methyl-1,4-naphthoquinone" RELATED [KEGG_COMPOUND] +synonym: "2-methylnaphthalene-1,4-dione" EXACT IUPAC_NAME [IUPAC] +synonym: "C11H8O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC1=CC(=O)c2ccccc2C1=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C11H8O2/c1-7-6-10(12)8-4-2-3-5-9(8)11(7)13/h2-6H,1H3" RELATED InChI [ChEBI] +synonym: "MENADIONE" EXACT [PDBeChem] +synonym: "Menadione" EXACT [KEGG_COMPOUND] +synonym: "menadione" EXACT [UniProt] +synonym: "MJVAVZPDRWSRRC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Vitamin K3" RELATED [KEGG_COMPOUND] +xref: CAS:58-27-5 "ChemIDplus" +xref: Drug_Central:1683 "DrugCentral" +xref: DrugBank:DB00170 +xref: HMDB:HMDB01892 +xref: KEGG:C05377 +xref: KEGG:D02335 +xref: LINCS:LSM-3755 +xref: PDBeChem:VK3 +xref: PMID:13779073 "Europe PMC" +xref: PMID:15052609 "Europe PMC" +xref: PMID:16469140 "Europe PMC" +xref: PMID:1650428 "Europe PMC" +xref: PMID:28166217 "Europe PMC" +xref: PMID:9380028 "Europe PMC" +xref: Reaxys:1908453 "Reaxys" +xref: Wikipedia:Menadione +is_a: CHEBI:132142 ! 1,4-naphthoquinones +relationship: has_role CHEBI:50733 ! nutraceutical + +[Term] +id: CHEBI:28885 +name: butan-1-ol +namespace: chebi_ontology +alt_id: CHEBI:22936 +alt_id: CHEBI:39632 +alt_id: CHEBI:612 +def: "A primary alcohol that is butane in which a hydrogen of one of the methyl groups is substituted by a hydroxy group. It it produced in small amounts in humans by the gut microbes." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-BUTANOL" RELATED [PDBeChem] +synonym: "1-Butanol" RELATED [KEGG_COMPOUND] +synonym: "1-butyl alcohol" RELATED [NIST_Chemistry_WebBook] +synonym: "1-hydroxybutane" RELATED [NIST_Chemistry_WebBook] +synonym: "74.073" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "74.12160" RELATED MASS [ChEBI] +synonym: "BuOH" RELATED [IUPAC] +synonym: "butan-1-ol" EXACT IUPAC_NAME [IUPAC] +synonym: "butan-1-ol" EXACT [UniProt] +synonym: "C4H10O" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CCCCO" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C4H10O/c1-2-3-4-5/h5H,2-4H2,1H3" RELATED InChI [ChEBI] +synonym: "LRHPLDYGYMQRHN-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "n-butan-1-ol" RELATED [NIST_Chemistry_WebBook] +synonym: "n-Butanol" RELATED [KEGG_COMPOUND] +synonym: "n-butyl alcohol" RELATED [ChemIDplus] +synonym: "n-Butylalkohol" RELATED [ChEBI] +synonym: "propyl carbinol" RELATED [ChemIDplus] +xref: Beilstein:969148 "Beilstein" +xref: CAS:71-36-3 "ChemIDplus" +xref: colombos:BUTANOL +xref: DrugBank:DB02145 +xref: Gmelin:25753 "Gmelin" +xref: HMDB:HMDB04327 +xref: KEGG:C06142 +xref: KEGG:D03200 +xref: MetaCyc:BUTANOL +xref: PDBeChem:1BO +xref: PMID:23980702 "Europe PMC" +xref: PMID:7096503 "Europe PMC" +xref: Reaxys:969148 "Reaxys" +xref: Wikipedia:N-Butanol +is_a: CHEBI:15734 ! primary alcohol +is_a: CHEBI:50584 ! alkyl alcohol +relationship: has_role CHEBI:48356 ! protic solvent +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:28938 +name: ammonium +namespace: chebi_ontology +alt_id: CHEBI:22534 +alt_id: CHEBI:49783 +alt_id: CHEBI:7435 +def: "An onium cation obtained by protonation of ammonia." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "18.034" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "18.03850" RELATED MASS [ChEBI] +synonym: "[H][N+]([H])([H])[H]" RELATED SMILES [ChEBI] +synonym: "[NH4](+)" RELATED [MolBase] +synonym: "ammonium" EXACT IUPAC_NAME [IUPAC] +synonym: "ammonium" EXACT [ChEBI] +synonym: "AMMONIUM ION" RELATED [PDBeChem] +synonym: "Ammonium(1+)" RELATED [ChemIDplus] +synonym: "azanium" EXACT IUPAC_NAME [IUPAC] +synonym: "H4N" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/H3N/h1H3/p+1" RELATED InChI [ChEBI] +synonym: "NH4(+)" RELATED [UniProt] +synonym: "NH4(+)" RELATED [IUPAC] +synonym: "NH4+" RELATED [KEGG_COMPOUND] +synonym: "QGZKDVFQNNGYKY-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +xref: CAS:14798-03-9 "NIST Chemistry WebBook" +xref: Gmelin:84 "Gmelin" +xref: KEGG:C01342 +xref: MetaCyc:AMMONIUM +xref: MolBase:929 +xref: PDBeChem:NH4 +xref: PMID:11319011 "Europe PMC" +xref: PMID:11341317 "Europe PMC" +xref: PMID:12096804 "Europe PMC" +xref: PMID:14512268 "Europe PMC" +xref: PMID:14879753 "Europe PMC" +xref: PMID:16345391 "Europe PMC" +xref: PMID:16903292 "Europe PMC" +xref: PMID:17392693 "Europe PMC" +xref: PMID:18515490 "Europe PMC" +xref: PMID:19199063 "Europe PMC" +xref: PMID:19596600 "Europe PMC" +xref: PMID:19682559 "Europe PMC" +xref: PMID:19716251 "Europe PMC" +xref: PMID:21993530 "Europe PMC" +xref: PMID:22265469 "Europe PMC" +xref: PMID:22524020 "Europe PMC" +xref: PMID:22562341 "Europe PMC" +xref: PMID:22631217 "Europe PMC" +xref: Reaxys:16093784 "Reaxys" +xref: Wikipedia:Ammonium +is_a: CHEBI:35106 ! nitrogen hydride +is_a: CHEBI:35274 ! ammonium ion +is_a: CHEBI:50313 ! onium cation +is_a: CHEBI:60242 ! monovalent inorganic cation +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:16134 ! ammonia + +[Term] +id: CHEBI:28963 +name: amino sugar +namespace: chebi_ontology +alt_id: CHEBI:22481 +alt_id: CHEBI:22530 +alt_id: CHEBI:2662 +def: "Any sugar having one or more alcoholic hydroxy groups replaced by substituted or unsubstituted amino groups." [] +subset: 3_STAR +synonym: "amino sugars" RELATED [ChEBI] +synonym: "aminosugar" RELATED [ChEBI] +synonym: "Aminosugars" RELATED [KEGG_COMPOUND] +xref: KEGG:C05383 +xref: PMID:18424273 "Europe PMC" +xref: PMID:9056391 "Europe PMC" +is_a: CHEBI:63299 ! carbohydrate derivative + +[Term] +id: CHEBI:28965 +name: dicarboxylic acid dianion +namespace: chebi_ontology +alt_id: CHEBI:13632 +alt_id: CHEBI:23688 +alt_id: CHEBI:23689 +alt_id: CHEBI:38711 +def: "A carboxylic acid dianion obtained by deprotonation of both carboxy groups of any dicarboxylic acid." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "87.980" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[O-]C(=O)[*]C([O-])=O" RELATED SMILES [ChEBI] +synonym: "a dicarboxylate" RELATED [UniProt] +synonym: "C2O4R" RELATED FORMULA [ChEBI] +synonym: "dicarboxylate" RELATED [ChEBI] +synonym: "dicarboxylates" RELATED [ChEBI] +synonym: "dicarboxylic acid dianion" EXACT [ChEBI] +synonym: "dicarboxylic acid dianions" RELATED [ChEBI] +is_a: CHEBI:35693 ! dicarboxylic acid anion +is_a: CHEBI:38716 ! carboxylic acid dianion + +[Term] +id: CHEBI:28971 +name: ampicillin +namespace: chebi_ontology +alt_id: CHEBI:22536 +alt_id: CHEBI:2683 +alt_id: CHEBI:40648 +alt_id: CHEBI:45042 +def: "A penicillin in which the substituent at position 6 of the penam ring is a 2-amino-2-phenylacetamido group." [] +subset: 3_STAR +synonym: "(2S,5R,6R)-6-{[(2R)-2-amino-2-phenylacetyl]amino}-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid" RELATED [IUPAC] +synonym: "(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID" RELATED [PDBeChem] +synonym: "(2S,6R)-6-{[(2R)-2-amino-2-phenylethanoyl]amino}-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid" RELATED [PDBeChem] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "349.110" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "349.40500" RELATED MASS [ChEBI] +synonym: "6-(D-(2-amino-2-phenylacetamido))-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo(3.2.0)heptane-2-carboxylic acid" RELATED [ChemIDplus] +synonym: "6beta-[(2R)-2-amino-2-phenylacetamido]-2,2-dimethylpenam-3alpha-carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]12SC(C)(C)[C@@H](N1C(=O)[C@H]2NC(=O)[C@H](N)c1ccccc1)C(O)=O" RELATED SMILES [ChEBI] +synonym: "ABPC" RELATED [ChEBI] +synonym: "aminobenzylpenicillin" RELATED [DrugBank] +synonym: "AMP" RELATED [ChEBI] +synonym: "ampicilina" RELATED INN [ChemIDplus] +synonym: "Ampicillin" EXACT [KEGG_COMPOUND] +synonym: "ampicillin" RELATED INN [ChemIDplus] +synonym: "ampicillin acid" RELATED [DrugBank] +synonym: "ampicillin anhydrous" RELATED [DrugBank] +synonym: "ampicilline" RELATED INN [ChemIDplus] +synonym: "ampicillinum" RELATED INN [ChemIDplus] +synonym: "Anhydrous ampicillin" RELATED [KEGG_COMPOUND] +synonym: "AP" RELATED [ChEBI] +synonym: "AVKUERGKIZMTKX-NJBDSQKTSA-N" RELATED InChIKey [ChEBI] +synonym: "C16H19N3O4S" RELATED FORMULA [ChEBI] +synonym: "D-(-)-6-(alpha-aminophenylacetamido)penicillanic acid" RELATED [ChemIDplus] +synonym: "D-(-)-ampicillin" RELATED [ChemIDplus] +synonym: "InChI=1S/C16H19N3O4S/c1-16(2)11(15(22)23)19-13(21)10(14(19)24-16)18-12(20)9(17)8-6-4-3-5-7-8/h3-7,9-11,14H,17H2,1-2H3,(H,18,20)(H,22,23)/t9-,10-,11+,14-/m1/s1" RELATED InChI [ChEBI] +xref: Beilstein:4300240 "Beilstein" +xref: CAS:69-53-4 "ChemIDplus" +xref: colombos:AMPICILIN +xref: Drug_Central:198 "DrugCentral" +xref: DrugBank:DB00415 +xref: HMDB:HMDB14559 +xref: KEGG:C06574 +xref: KEGG:D00204 +xref: LINCS:LSM-5761 +xref: Patent:GB902703 +xref: Patent:US2985648 +xref: Patent:US3157640 +xref: PDB:1H8S +xref: PDBeChem:AIC +xref: PDBeChem:PN1 +xref: PMID:10930630 "Europe PMC" +xref: PMID:12562703 "Europe PMC" +xref: PMID:12569987 "Europe PMC" +xref: PMID:12833570 "Europe PMC" +xref: PMID:14139119 "Europe PMC" +xref: PMID:14455820 "Europe PMC" +xref: PMID:15768449 "Europe PMC" +xref: PMID:16033609 "Europe PMC" +xref: PMID:18611716 "Europe PMC" +xref: PMID:19967069 "Europe PMC" +xref: PMID:2083978 "Europe PMC" +xref: PMID:23568176 "Europe PMC" +xref: PMID:23861268 "Europe PMC" +xref: PMID:24474427 "Europe PMC" +xref: PMID:24666465 "Europe PMC" +xref: PMID:25998949 "Europe PMC" +xref: PMID:28543395 "Europe PMC" +xref: PMID:6176550 "Europe PMC" +xref: PMID:8020088 "Europe PMC" +xref: PMID:9433938 "Europe PMC" +xref: Reaxys:4300240 "Reaxys" +xref: Wikipedia:Ampicillin +is_a: CHEBI:17334 ! penicillin +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: is_conjugate_acid_of CHEBI:50658 ! ampicillin(1-) + +[Term] +id: CHEBI:28976 +name: carbonic acid +namespace: chebi_ontology +alt_id: CHEBI:13351 +alt_id: CHEBI:23017 +alt_id: CHEBI:23744 +alt_id: CHEBI:3401 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "62.000" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "62.02478" RELATED MASS [ChEBI] +synonym: "[CO(OH)2]" RELATED [IUPAC] +synonym: "BVKZGUZCCUSVTD-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Carbonic acid" EXACT [KEGG_COMPOUND] +synonym: "carbonic acid" EXACT [UniProt] +synonym: "carbonic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "CH2O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Dihydrogen carbonate" RELATED [KEGG_COMPOUND] +synonym: "dihydroxidooxidocarbon" EXACT IUPAC_NAME [IUPAC] +synonym: "H2CO3" RELATED [KEGG_COMPOUND] +synonym: "H2CO3" RELATED [IUPAC] +synonym: "InChI=1S/CH2O3/c2-1(3)4/h(H2,2,3,4)" RELATED InChI [ChEBI] +synonym: "Koehlensaeure" RELATED [ChEBI] +synonym: "OC(O)=O" RELATED SMILES [ChEBI] +xref: CAS:463-79-6 "KEGG COMPOUND" +xref: Gmelin:25554 "Gmelin" +xref: KEGG:C01353 +xref: PDBeChem:CO3 +is_a: CHEBI:35605 ! carbon oxoacid +is_a: CHEBI:36961 ! chalcocarbonic acid +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: is_conjugate_acid_of CHEBI:17544 ! hydrogencarbonate + +[Term] +id: CHEBI:28997 +name: 2'-deoxyinosine +namespace: chebi_ontology +alt_id: CHEBI:19248 +alt_id: CHEBI:23629 +alt_id: CHEBI:39841 +alt_id: CHEBI:43293 +alt_id: CHEBI:43436 +alt_id: CHEBI:4413 +def: "A purine 2'-deoxyribonucleoside that is inosine in which the hydroxy group at position 2' is replaced by a hydrogen." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2'-deoxyinosine" EXACT IUPAC_NAME [IUPAC] +synonym: "2'-deoxyinosine" EXACT [UniProt] +synonym: "252.086" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "252.22684" RELATED MASS [ChEBI] +synonym: "9-(2-deoxy-beta-D-erythro-pentofuranosyl)-9H-purin-6-ol" RELATED [IUPAC] +synonym: "9-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]-9H-purin-6-ol" EXACT IUPAC_NAME [IUPAC] +synonym: "C10H12N4O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Deoxyinosine" RELATED [ChemIDplus] +synonym: "Deoxyinosine" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C10H12N4O4/c15-2-6-5(16)1-7(18-6)14-4-13-8-9(14)11-3-12-10(8)17/h3-7,15-16H,1-2H2,(H,11,12,17)/t5-,6+,7+/m0/s1" RELATED InChI [ChEBI] +synonym: "OC[C@H]1O[C@H](C[C@@H]1O)n1cnc2c1nc[nH]c2=O" RELATED SMILES [ChEBI] +synonym: "VGONTNSXDCQUGY-RRKCRQDMSA-N" RELATED InChIKey [ChEBI] +xref: CAS:890-38-0 "KEGG COMPOUND" +xref: DrugBank:DB02380 +xref: HMDB:HMDB00071 +xref: KEGG:C05512 +xref: MetaCyc:DEOXYINOSINE +xref: PMID:23408659 "Europe PMC" +xref: PMID:24292023 "Europe PMC" +xref: Reaxys:1011821 "Reaxys" +xref: YMDB:YMDB00659 +is_a: CHEBI:19254 ! purine 2'-deoxyribonucleoside +relationship: has_functional_parent CHEBI:17596 ! inosine +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:29016 +name: arginine +namespace: chebi_ontology +alt_id: CHEBI:22616 +alt_id: CHEBI:2643 +def: "An alpha-amino acid that is glycine in which the alpha-is substituted by a 3-guanidinopropyl group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "174.112" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "174.20112" RELATED MASS [ChEBI] +synonym: "2-amino-5-(carbamimidamido)pentanoic acid" RELATED [IUPAC] +synonym: "2-amino-5-guanidinopentanoic acid" RELATED [JCBN] +synonym: "2-Amino-5-guanidinovaleric acid" RELATED [KEGG_COMPOUND] +synonym: "Arginin" RELATED [ChEBI] +synonym: "Arginine" EXACT [KEGG_COMPOUND] +synonym: "arginine" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H14N4O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Harg" RELATED [IUPAC] +synonym: "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)" RELATED InChI [ChEBI] +synonym: "NC(CCCNC(N)=N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "ODKSFYDXXFIFQN-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1725411 "Beilstein" +xref: CAS:7200-25-1 "ChemIDplus" +xref: colombos:ARGININE +xref: KEGG:C02385 +xref: PMID:10848923 "Europe PMC" +xref: Reaxys:1725411 "Reaxys" +xref: Wikipedia:L-Arginine +is_a: CHEBI:24436 ! guanidines +is_a: CHEBI:33704 ! alpha-amino acid +relationship: has_part CHEBI:50340 ! 3-carbamimidamidopropyl group +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:32695 ! argininate +relationship: is_conjugate_base_of CHEBI:32696 ! argininium(1+) +property_value: http://purl.obolibrary.org/obo/chebi/formula "C6H14N4O2" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/inchikey "ODKSFYDXXFIFQN-UHFFFAOYSA-N" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/mass "174.20112" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "174.112" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/smiles "NC(CCCNC(N)=N)C(O)=O" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:29033 +name: iron(2+) +namespace: chebi_ontology +alt_id: CHEBI:13319 +alt_id: CHEBI:13321 +alt_id: CHEBI:21129 +alt_id: CHEBI:24876 +alt_id: CHEBI:34754 +alt_id: CHEBI:49599 +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "55.84500" RELATED MASS [ChEBI] +synonym: "55.935" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "[Fe++]" RELATED SMILES [ChEBI] +synonym: "CWYNVVGOOAEACU-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Fe" RELATED FORMULA [KEGG_COMPOUND] +synonym: "FE (II) ION" RELATED [PDBeChem] +synonym: "Fe(2+)" RELATED [UniProt] +synonym: "Fe(II)" RELATED [KEGG_COMPOUND] +synonym: "Fe2+" RELATED [KEGG_COMPOUND] +synonym: "Ferrous ion" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/Fe/q+2" RELATED InChI [ChEBI] +synonym: "iron ion(2+)" RELATED [ChemIDplus] +synonym: "Iron(2+)" EXACT [KEGG_COMPOUND] +synonym: "iron(2+)" EXACT IUPAC_NAME [IUPAC] +synonym: "iron(2+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "iron(II) cation" EXACT IUPAC_NAME [IUPAC] +xref: CAS:15438-31-0 "ChemIDplus" +xref: Gmelin:6845 "Gmelin" +xref: KEGG:C14818 +xref: PDBeChem:FE2 +is_a: CHEBI:24875 ! iron cation +is_a: CHEBI:30412 ! monoatomic dication +is_a: CHEBI:60240 ! divalent metal cation +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:29034 +name: iron(3+) +namespace: chebi_ontology +alt_id: CHEBI:13320 +alt_id: CHEBI:21130 +alt_id: CHEBI:24877 +alt_id: CHEBI:34755 +alt_id: CHEBI:49595 +subset: 3_STAR +synonym: "+3" RELATED CHARGE [ChEBI] +synonym: "55.84500" RELATED MASS [ChEBI] +synonym: "55.935" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "[Fe+3]" RELATED SMILES [ChEBI] +synonym: "Fe" RELATED FORMULA [KEGG_COMPOUND] +synonym: "FE (III) ION" RELATED [PDBeChem] +synonym: "Fe(3+)" RELATED [IUPAC] +synonym: "Fe(3+)" RELATED [UniProt] +synonym: "Fe(III)" RELATED [KEGG_COMPOUND] +synonym: "Fe3+" RELATED [KEGG_COMPOUND] +synonym: "Ferric ion" RELATED [KEGG_COMPOUND] +synonym: "ferric iron" RELATED [ChEBI] +synonym: "InChI=1S/Fe/q+3" RELATED InChI [ChEBI] +synonym: "Iron(3+)" EXACT [KEGG_COMPOUND] +synonym: "iron(3+)" EXACT IUPAC_NAME [IUPAC] +synonym: "iron(3+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "iron(III) cation" EXACT IUPAC_NAME [IUPAC] +synonym: "iron, ion (Fe(3+))" RELATED [ChemIDplus] +synonym: "VTLYFUHAOXGGBS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:20074-52-6 "ChemIDplus" +xref: Gmelin:15986 "Gmelin" +xref: KEGG:C14819 +xref: PDBeChem:FE +is_a: CHEBI:24875 ! iron cation +is_a: CHEBI:27153 ! monoatomic trication +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:29035 +name: manganese(2+) +namespace: chebi_ontology +alt_id: CHEBI:21435 +alt_id: CHEBI:25156 +alt_id: CHEBI:49749 +def: "A divalent metal cation in which the metal is manganese." [] +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "54.938" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "54.93805" RELATED MASS [ChEBI] +synonym: "[Mn++]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/Mn/q+2" RELATED InChI [ChEBI] +synonym: "MANGANESE (II) ION" RELATED [PDBeChem] +synonym: "manganese(2+)" EXACT IUPAC_NAME [IUPAC] +synonym: "manganese(2+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "manganese(II)" RELATED [ChemIDplus] +synonym: "manganese(II) cation" EXACT IUPAC_NAME [IUPAC] +synonym: "manganese, ion (Mn2+)" RELATED [ChemIDplus] +synonym: "manganous ion" RELATED [ChemIDplus] +synonym: "Mn" RELATED FORMULA [ChEBI] +synonym: "Mn(2+)" RELATED [ChEBI] +synonym: "Mn(2+)" RELATED [UniProt] +synonym: "Mn(II)" RELATED [ChEBI] +synonym: "Mn2+" RELATED [ChEBI] +synonym: "WAEMQWOKJMHJLA-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:16397-91-4 "ChemIDplus" +xref: Gmelin:6858 "Gmelin" +xref: PDBeChem:MN +is_a: CHEBI:25155 ! manganese cation +is_a: CHEBI:30412 ! monoatomic dication +is_a: CHEBI:60240 ! divalent metal cation + +[Term] +id: CHEBI:29036 +name: copper(2+) +namespace: chebi_ontology +alt_id: CHEBI:20882 +alt_id: CHEBI:23380 +alt_id: CHEBI:49550 +def: "An ion of copper carrying a double positive charge." [] +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "62.930" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "63.54600" RELATED MASS [ChEBI] +synonym: "[Cu++]" RELATED SMILES [ChEBI] +synonym: "COPPER (II) ION" RELATED [PDBeChem] +synonym: "copper(2+)" EXACT IUPAC_NAME [IUPAC] +synonym: "copper(2+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "copper(II) cation" EXACT IUPAC_NAME [IUPAC] +synonym: "copper(II) cation" RELATED [ChEBI] +synonym: "copper, ion (Cu2+)" RELATED [ChemIDplus] +synonym: "Cu" RELATED FORMULA [ChEBI] +synonym: "Cu(2+)" RELATED [UniProt] +synonym: "Cu(II)" RELATED [ChEBI] +synonym: "Cu2+" RELATED [ChEBI] +synonym: "cupric ion" RELATED [ChEBI] +synonym: "InChI=1S/Cu/q+2" RELATED InChI [ChEBI] +synonym: "JPVYNHNXODAKFH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:15158-11-9 "ChemIDplus" +xref: Gmelin:6855 "Gmelin" +xref: PDBeChem:CU +xref: PMID:23900424 "Europe PMC" +xref: PMID:24168430 "Europe PMC" +xref: Reaxys:3587177 "Reaxys" +is_a: CHEBI:23378 ! copper cation +is_a: CHEBI:30412 ! monoatomic dication +is_a: CHEBI:60240 ! divalent metal cation + +[Term] +id: CHEBI:29067 +name: carboxylic acid anion +namespace: chebi_ontology +alt_id: CHEBI:13626 +alt_id: CHEBI:13945 +alt_id: CHEBI:23026 +alt_id: CHEBI:58657 +def: "The conjugate base formed when the carboxy group of a carboxylic acid is deprotonated." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "43.990" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "44.00950" RELATED MASS [ChEBI] +synonym: "[O-]C([*])=O" RELATED SMILES [ChEBI] +synonym: "a carboxylate" RELATED [UniProt] +synonym: "carboxylic acid anions" RELATED [ChEBI] +synonym: "carboxylic anions" RELATED [ChEBI] +synonym: "CO2R" RELATED FORMULA [ChEBI] +is_a: CHEBI:25696 ! organic anion +is_a: CHEBI:35406 ! oxoanion +relationship: is_conjugate_base_of CHEBI:33575 ! carboxylic acid +property_value: http://purl.obolibrary.org/obo/chebi/formula "CO2R" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/mass "44.00950" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "43.990" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/smiles "[O-]C([*])=O" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:29073 +name: L-ascorbic acid +namespace: chebi_ontology +alt_id: CHEBI:21240 +alt_id: CHEBI:2868 +alt_id: CHEBI:40892 +alt_id: CHEBI:43473 +def: "The L-enantiomer of ascorbic acid and conjugate acid of L-ascorbate." [] +subset: 3_STAR +synonym: "(5R)-5-[(1S)-1,2-dihydroxyethyl]-3,4-dihydroxyfuran-2(5H)-one" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "176.032" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "176.12410" RELATED MASS [ChEBI] +synonym: "[H][C@@]1(OC(=O)C(O)=C1O)[C@@H](O)CO" RELATED SMILES [ChEBI] +synonym: "acide ascorbique" RELATED INN [ChemIDplus] +synonym: "acido ascorbico" RELATED INN [ChemIDplus] +synonym: "acidum ascorbicum" RELATED INN [ChemIDplus] +synonym: "acidum ascorbinicum" RELATED [ChemIDplus] +synonym: "Ascoltin" RELATED BRAND_NAME [KEGG_DRUG] +synonym: "ASCORBIC ACID" RELATED [PDBeChem] +synonym: "Ascorbic acid" RELATED [KEGG_COMPOUND] +synonym: "ascorbic acid" RELATED INN [KEGG_DRUG] +synonym: "Ascorbicap" RELATED [KEGG_DRUG] +synonym: "Ascorbinsaeure" RELATED [ChEBI] +synonym: "C6H8O6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CIWBSHSKHKDKBQ-JLAZNSOCSA-N" RELATED InChIKey [ChEBI] +synonym: "E 300" RELATED [ChEBI] +synonym: "E-300" RELATED [ChEBI] +synonym: "E300" RELATED [ChEBI] +synonym: "InChI=1S/C6H8O6/c7-1-2(8)5-3(9)4(10)6(11)12-5/h2,5,7-10H,1H2/t2-,5+/m0/s1" RELATED InChI [ChEBI] +synonym: "L-(+)-ascorbic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "L-Ascorbate" RELATED [KEGG_COMPOUND] +synonym: "L-Ascorbic acid" EXACT [KEGG_COMPOUND] +synonym: "L-threo-hex-2-enono-1,4-lactone" EXACT IUPAC_NAME [IUPAC] +synonym: "Vitamin C" RELATED [KEGG_COMPOUND] +xref: Beilstein:84272 "Beilstein" +xref: CAS:50-81-7 "NIST Chemistry WebBook" +xref: Drug_Central:4072 "DrugCentral" +xref: DrugBank:DB00126 +xref: Gmelin:4087 "Gmelin" +xref: HMDB:HMDB00044 +xref: KEGG:C00072 +xref: KEGG:D00018 +xref: KNApSAcK:C00001179 +xref: MetaCyc:ASCORBATE +xref: PDBeChem:ASC +xref: PMID:12569111 "Europe PMC" +xref: PMID:15949874 "Europe PMC" +xref: PMID:17253561 "Europe PMC" +xref: PMID:17636648 "Europe PMC" +xref: PMID:18813862 "Europe PMC" +xref: PMID:19273781 "Europe PMC" +xref: PMID:19692922 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:491997 "Europe PMC" +xref: PMID:9506998 "Europe PMC" +xref: Reaxys:84272 "Reaxys" +xref: Wikipedia:Ascorbic_Acid +is_a: CHEBI:22652 ! ascorbic acid +relationship: has_role CHEBI:21241 ! vitamin C +relationship: has_role CHEBI:23354 ! coenzyme +relationship: has_role CHEBI:64577 ! flour treatment agent +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:77962 ! food antioxidant +relationship: is_conjugate_acid_of CHEBI:38290 ! L-ascorbate +relationship: is_enantiomer_of CHEBI:51384 ! D-ascorbic acid + +[Term] +id: CHEBI:29075 +name: mononucleotide +namespace: chebi_ontology +alt_id: CHEBI:14616 +alt_id: CHEBI:25404 +alt_id: CHEBI:6983 +subset: 3_STAR +synonym: "0" RELATED CHARGE [KEGG_COMPOUND] +synonym: "213.016" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "213.103" RELATED MASS [KEGG_COMPOUND] +synonym: "C5H10O7PR" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Mononucleotide" EXACT [KEGG_COMPOUND] +synonym: "mononucleotides" RELATED [ChEBI] +xref: KEGG:C02171 +is_a: CHEBI:36976 ! nucleotide + +[Term] +id: CHEBI:29101 +name: sodium(1+) +namespace: chebi_ontology +alt_id: CHEBI:26717 +alt_id: CHEBI:49766 +alt_id: CHEBI:9175 +def: "A monoatomic monocation obtained from sodium." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "22.98977" RELATED MASS [ChEBI] +synonym: "22.990" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "[Na+]" RELATED SMILES [ChEBI] +synonym: "FKNQFGJONOIPTF-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/Na/q+1" RELATED InChI [ChEBI] +synonym: "Na" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Na(+)" RELATED [UniProt] +synonym: "Na(+)" RELATED [IUPAC] +synonym: "Na+" RELATED [KEGG_COMPOUND] +synonym: "sodium cation" EXACT IUPAC_NAME [IUPAC] +synonym: "SODIUM ION" RELATED [PDBeChem] +synonym: "sodium(1+)" EXACT IUPAC_NAME [IUPAC] +synonym: "sodium(1+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "sodium(I) cation" EXACT IUPAC_NAME [IUPAC] +xref: CAS:17341-25-2 "ChemIDplus" +xref: Gmelin:15196 "Gmelin" +xref: KEGG:C01330 +xref: PDBeChem:NA +is_a: CHEBI:25414 ! monoatomic monocation +is_a: CHEBI:33504 ! alkali metal cation +is_a: CHEBI:37246 ! elemental sodium +is_a: CHEBI:60242 ! monovalent inorganic cation +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:29103 +name: potassium(1+) +namespace: chebi_ontology +alt_id: CHEBI:26219 +alt_id: CHEBI:49685 +alt_id: CHEBI:8345 +def: "A monoatomic monocation obtained from potassium." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "38.964" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "39.09830" RELATED MASS [ChEBI] +synonym: "[K+]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/K/q+1" RELATED InChI [ChEBI] +synonym: "K" RELATED FORMULA [KEGG_COMPOUND] +synonym: "K(+)" RELATED [UniProt] +synonym: "K(+)" RELATED [IUPAC] +synonym: "K+" RELATED [KEGG_COMPOUND] +synonym: "NPYPAHLBTDXSSS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "potassium cation" EXACT IUPAC_NAME [IUPAC] +synonym: "POTASSIUM ION" RELATED [PDBeChem] +synonym: "potassium(1+)" EXACT IUPAC_NAME [IUPAC] +synonym: "potassium(1+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "potassium(I) cation" EXACT IUPAC_NAME [IUPAC] +xref: CAS:24203-36-9 "NIST Chemistry WebBook" +xref: Gmelin:15203 "Gmelin" +xref: KEGG:C00238 +xref: KEGG:D08403 +xref: PDBeChem:K +is_a: CHEBI:25414 ! monoatomic monocation +is_a: CHEBI:33504 ! alkali metal cation +is_a: CHEBI:37247 ! elemental potassium +is_a: CHEBI:60242 ! monovalent inorganic cation +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:29105 +name: zinc(2+) +namespace: chebi_ontology +alt_id: CHEBI:10113 +alt_id: CHEBI:27368 +alt_id: CHEBI:49972 +alt_id: CHEBI:49982 +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "63.929" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "65.39000" RELATED MASS [ChEBI] +synonym: "[Zn++]" RELATED SMILES [ChEBI] +synonym: "dietary zinc" RELATED [ChEBI] +synonym: "InChI=1S/Zn/q+2" RELATED InChI [ChEBI] +synonym: "PTFCDOFLOPIGGS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "zinc cation" RELATED [IUPAC] +synonym: "ZINC ION" RELATED [PDBeChem] +synonym: "zinc(2+)" EXACT IUPAC_NAME [IUPAC] +synonym: "zinc(2+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "zinc(II) cation" EXACT IUPAC_NAME [IUPAC] +synonym: "zinc, ion (Zn2+)" RELATED [ChemIDplus] +synonym: "Zn" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Zn(2+)" RELATED [UniProt] +synonym: "Zn(2+)" RELATED [IUPAC] +synonym: "Zn(II)" RELATED [KEGG_COMPOUND] +synonym: "Zn2+" RELATED [KEGG_COMPOUND] +xref: CAS:23713-49-7 "ChemIDplus" +xref: Gmelin:6869 "Gmelin" +xref: KEGG:C00038 +xref: PDBeChem:ZN +is_a: CHEBI:30412 ! monoatomic dication +is_a: CHEBI:60240 ! divalent metal cation +is_a: CHEBI:63056 ! zinc cation +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:29192 +name: hydrogenperoxide(1-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "32.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "33.00674" RELATED MASS [ChEBI] +synonym: "[H]O[O-]" RELATED SMILES [ChEBI] +synonym: "[HO2](-)" RELATED [ChEBI] +synonym: "dioxidanide" EXACT IUPAC_NAME [IUPAC] +synonym: "HO2" RELATED FORMULA [ChEBI] +synonym: "HO2(-)" RELATED [IUPAC] +synonym: "HOO anion" RELATED [NIST_Chemistry_WebBook] +synonym: "HOO(-)" RELATED [ChEBI] +synonym: "hydrogen(peroxide)(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogendioxide(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogenperoxide(1-)" EXACT [IUPAC] +synonym: "InChI=1S/H2O2/c1-2/h1-2H/p-1" RELATED InChI [ChEBI] +synonym: "MHAJPDPJQMAIIY-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: CAS:14691-59-9 "NIST Chemistry WebBook" +xref: Gmelin:507 "Gmelin" +is_a: CHEBI:33693 ! oxygen hydride +relationship: is_conjugate_base_of CHEBI:16240 ! hydrogen peroxide + +[Term] +id: CHEBI:29195 +name: cyanate +namespace: chebi_ontology +alt_id: CHEBI:14037 +alt_id: CHEBI:23419 +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "41.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "42.01684" RELATED MASS [ChEBI] +synonym: "[C(N)O](-)" RELATED [IUPAC] +synonym: "[O-]C#N" RELATED SMILES [ChEBI] +synonym: "CNO" RELATED FORMULA [ChEBI] +synonym: "Cyanat" RELATED [ChEBI] +synonym: "cyanate" EXACT [UniProt] +synonym: "cyanate" EXACT IUPAC_NAME [IUPAC] +synonym: "cyanate ion" RELATED [ChemIDplus] +synonym: "InChI=1S/CHNO/c2-1-3/h3H/p-1" RELATED InChI [ChEBI] +synonym: "nitridooxidocarbonate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "OCN(-)" RELATED [IUPAC] +synonym: "XLJMAIOERFSOGZ-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "Zyanat" RELATED [ChEBI] +xref: CAS:661-20-1 "UM-BBD" +xref: CAS:71000-82-3 "ChemIDplus" +xref: KEGG:C01417 "ChEBI" +xref: UM-BBD_compID:c0568 "UM-BBD" +is_a: CHEBI:35352 ! organonitrogen compound +is_a: CHEBI:36828 ! pseudohalide anion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:28024 ! cyanic acid +relationship: is_conjugate_base_of CHEBI:29202 ! isocyanic acid + +[Term] +id: CHEBI:29202 +name: isocyanic acid +namespace: chebi_ontology +def: "A colourless, volatile, poisonous inorganic compound with the formula HNCO; the simplest stable chemical compound that contains carbon, hydrogen, nitrogen, and oxygen, the four most commonly-found elements in organic chemistry and biology." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "43.006" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "43.02478" RELATED MASS [ChEBI] +synonym: "[C(NH)O]" RELATED [IUPAC] +synonym: "carbimide" RELATED [ChEBI] +synonym: "CHNO" RELATED FORMULA [ChEBI] +synonym: "HN=C=O" RELATED [NIST_Chemistry_WebBook] +synonym: "HNCO" RELATED [IUPAC] +synonym: "hydrogen isocyanate" RELATED [NIST_Chemistry_WebBook] +synonym: "ICA" RELATED [ChEBI] +synonym: "InChI=1S/CHNO/c2-1-3/h2H" RELATED InChI [ChEBI] +synonym: "isocyanic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "isocyansaeure" RELATED [ChEBI] +synonym: "isozyansaeure" RELATED [ChEBI] +synonym: "methenamide" RELATED [ChEBI] +synonym: "N=C=O" RELATED SMILES [ChEBI] +synonym: "OWIKHYCFFJSOEH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "oxidoazanediidocarbon" RELATED [IUPAC] +xref: Beilstein:1616281 "Beilstein" +xref: CAS:75-13-8 "ChemIDplus" +xref: Gmelin:840 "Gmelin" +xref: PMID:19494520 "Europe PMC" +xref: PMID:26124058 "Europe PMC" +xref: PMID:26760716 "Europe PMC" +xref: PMID:977566 "Europe PMC" +xref: Reaxys:1616281 "Reaxys" +is_a: CHEBI:33405 ! hydracid +is_a: CHEBI:64708 ! one-carbon compound +relationship: is_conjugate_acid_of CHEBI:29195 ! cyanate +relationship: is_tautomer_of CHEBI:28024 ! cyanic acid + +[Term] +id: CHEBI:29214 +name: sulfonic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "81.972" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "82.08008" RELATED MASS [ChEBI] +synonym: "[H]S(O)(=O)=O" RELATED SMILES [ChEBI] +synonym: "[SHO2(OH)]" RELATED [IUPAC] +synonym: "acide sulfonique" RELATED [ChEBI] +synonym: "BDHFUVZGWQCTTF-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "H2O3S" RELATED FORMULA [ChEBI] +synonym: "HSHO3" RELATED [IUPAC] +synonym: "hydridohydroxidodioxidosulfur" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H2O3S/c1-4(2)3/h4H,(H,1,2,3)" RELATED InChI [ChEBI] +synonym: "sulfonic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "Sulfonsaeure" RELATED [ChEBI] +synonym: "sulphonic acid" RELATED [ChEBI] +xref: Gmelin:1404640 "Gmelin" +is_a: CHEBI:33402 ! sulfur oxoacid +relationship: is_conjugate_acid_of CHEBI:33543 ! sulfonate +relationship: is_tautomer_of CHEBI:48854 ! sulfurous acid + +[Term] +id: CHEBI:29222 +name: hypochlorite +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "50.964" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "51.45210" RELATED MASS [ChEBI] +synonym: "[ClO](-)" RELATED [IUPAC] +synonym: "[O-]Cl" RELATED SMILES [ChEBI] +synonym: "ClO" RELATED FORMULA [ChEBI] +synonym: "ClO(-)" RELATED [IUPAC] +synonym: "Hypochlorit" RELATED [ChEBI] +synonym: "hypochlorite" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/ClO/c1-2/q-1" RELATED InChI [ChEBI] +synonym: "oxidochlorate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "WQYVRQLZKVEZGA-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:14380-61-1 "ChemIDplus" +xref: Gmelin:682 "Gmelin" +xref: Wikipedia:Hypochlorite +is_a: CHEBI:33437 ! chlorine oxoanion +is_a: CHEBI:37750 ! chlorine oxide +is_a: CHEBI:79389 ! monovalent inorganic anion +relationship: is_conjugate_base_of CHEBI:24757 ! hypochlorous acid + +[Term] +id: CHEBI:29256 +name: thiol +namespace: chebi_ontology +alt_id: CHEBI:13443 +alt_id: CHEBI:13696 +alt_id: CHEBI:17366 +alt_id: CHEBI:26969 +alt_id: CHEBI:8766 +alt_id: CHEBI:9556 +def: "An organosulfur compound in which a thiol group, -SH, is attached to a carbon atom of any aliphatic or aromatic moiety." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "32.980" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "33.07300" RELATED MASS [ChEBI] +synonym: "a thiol" RELATED [UniProt] +synonym: "HSR" RELATED FORMULA [ChEBI] +synonym: "Mercaptan" RELATED [KEGG_COMPOUND] +synonym: "mercaptans" RELATED [ChEBI] +synonym: "Merkaptan" RELATED [ChEBI] +synonym: "RSH" RELATED [IUPAC] +synonym: "S[*]" RELATED SMILES [ChEBI] +synonym: "Thiol" EXACT [KEGG_COMPOUND] +synonym: "thiols" EXACT IUPAC_NAME [IUPAC] +synonym: "thiols" RELATED [ChEBI] +xref: KEGG:C00145 +xref: Wikipedia:Thiol +is_a: CHEBI:33261 ! organosulfur compound +relationship: has_part CHEBI:29917 ! thiol group + +[Term] +id: CHEBI:29258 +name: dihydrogenphosphite +namespace: chebi_ontology +def: "A monovalent inorganic anion obtained by deprotonation of phosphorous acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "80.974" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "80.98784" RELATED MASS [ChEBI] +synonym: "[H]OP([O-])O[H]" RELATED SMILES [ChEBI] +synonym: "[PO(OH)2] (-)" RELATED [IUPAC] +synonym: "BLBIZNCSZLTDPW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "dihydrogen phosphite" RELATED [ChEBI] +synonym: "dihydrogen(trioxidophosphate)(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "dihydrogenphosphite" EXACT IUPAC_NAME [IUPAC] +synonym: "dihydroxidooxidophosphate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "H2O3P" RELATED FORMULA [ChEBI] +synonym: "H2PO3(-)" RELATED [IUPAC] +synonym: "InChI=1S/H2O3P/c1-4(2)3/h1-2H/q-1" RELATED InChI [ChEBI] +xref: Gmelin:558293 "Gmelin" +is_a: CHEBI:26045 ! phosphite ion +is_a: CHEBI:79389 ! monovalent inorganic anion +relationship: is_conjugate_acid_of CHEBI:29259 ! hydrogenphosphite +relationship: is_conjugate_base_of CHEBI:36361 ! phosphorous acid + +[Term] +id: CHEBI:29259 +name: hydrogenphosphite +namespace: chebi_ontology +def: "A divalent inorganic anion resulting from the removal of a proton from two of the hydroxy groups of phosphorous acid." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "79.966" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "79.97990" RELATED MASS [ChEBI] +synonym: "[H]OP([O-])[O-]" RELATED SMILES [ChEBI] +synonym: "[PO2(OH)](2-)" RELATED [IUPAC] +synonym: "GBHRVZIGDIUCJB-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "HO3P" RELATED FORMULA [ChEBI] +synonym: "HPO3(2-)" RELATED [IUPAC] +synonym: "hydrogen phosphite" RELATED [IUPAC] +synonym: "hydrogen(trioxidophosphate)(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogenphosphite" EXACT IUPAC_NAME [IUPAC] +synonym: "hydroxidodioxidophosphate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/HO3P/c1-4(2)3/h1H/q-2" RELATED InChI [ChEBI] +xref: Gmelin:323302 "Gmelin" +is_a: CHEBI:26045 ! phosphite ion +is_a: CHEBI:79388 ! divalent inorganic anion +relationship: is_conjugate_acid_of CHEBI:45064 ! phosphite(3-) +relationship: is_conjugate_base_of CHEBI:29258 ! dihydrogenphosphite + +[Term] +id: CHEBI:29287 +name: gold atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "196.96655" RELATED MASS [ChEBI] +synonym: "196.967" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "79Au" RELATED [IUPAC] +synonym: "[Au]" RELATED SMILES [ChEBI] +synonym: "Au" RELATED [IUPAC] +synonym: "Au" RELATED FORMULA [ChEBI] +synonym: "aurum" RELATED [IUPAC] +synonym: "Gold" RELATED [ChEBI] +synonym: "gold" EXACT IUPAC_NAME [IUPAC] +synonym: "gold" RELATED [ChEBI] +synonym: "InChI=1S/Au" RELATED InChI [ChEBI] +synonym: "or" RELATED [ChEBI] +synonym: "oro" RELATED [ChEBI] +synonym: "PCHJSUWPFVWCPO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7440-57-5 "ChemIDplus" +xref: WebElements:Au +is_a: CHEBI:33366 ! copper group element atom + +[Term] +id: CHEBI:29320 +name: calcium(0) +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "39.963" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "40.07800" RELATED MASS [ChEBI] +synonym: "[Ca]" RELATED SMILES [ChEBI] +synonym: "Ca" RELATED FORMULA [ChEBI] +synonym: "Ca(0)" RELATED [ChEBI] +synonym: "calcium" EXACT IUPAC_NAME [IUPAC] +synonym: "calcium(0)" EXACT [IUPAC] +synonym: "Can" RELATED [IUPAC] +synonym: "InChI=1S/Ca" RELATED InChI [ChEBI] +synonym: "OYPRJOBELJOOCE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:4241647 "Beilstein" +xref: CAS:7440-70-2 "NIST Chemistry WebBook" +xref: Gmelin:16277 "Gmelin" +is_a: CHEBI:35155 ! elemental calcium + +[Term] +id: CHEBI:29321 +name: sodium nitroprusside +namespace: chebi_ontology +def: "An organic sodium salt that is the disodium salt of nitroprusside." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "261.91788" RELATED MASS [ChEBI] +synonym: "261.928" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[Na+].[Na+].O=N[Fe--](C#N)(C#N)(C#N)(C#N)C#N" RELATED SMILES [ChEBI] +synonym: "C5FeN6Na2O" RELATED FORMULA [ChEBI] +synonym: "disodium pentacyanidonitrosylferrate" RELATED [IUPAC] +synonym: "FPWUWQVZUNFZQM-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/5CN.Fe.NO.2Na/c5*1-2;;1-2;;/q;;;;;2*-1;2*+1" RELATED InChI [ChEBI] +synonym: "Na2[Fe(CN)5(NO)]" RELATED [IUPAC] +synonym: "Sodium nitroprusside anhydrous" RELATED [ChemIDplus] +synonym: "sodium pentacyanidonitrosylferrate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "sodium pentacyanidonitrosylferrate(III)" EXACT IUPAC_NAME [IUPAC] +xref: CAS:14402-89-2 "ChemIDplus" +is_a: CHEBI:38700 ! organic sodium salt +relationship: has_part CHEBI:7596 ! nitroprusside +relationship: has_role CHEBI:50566 ! nitric oxide donor + +[Term] +id: CHEBI:29337 +name: azanide +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "16.019" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "16.02262" RELATED MASS [ChEBI] +synonym: "[H][N-][H]" RELATED SMILES [ChEBI] +synonym: "amide" EXACT IUPAC_NAME [IUPAC] +synonym: "azanide" EXACT IUPAC_NAME [IUPAC] +synonym: "dihydridonitrate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "H2N" RELATED FORMULA [ChEBI] +synonym: "HYGWNUKOUCZBND-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/H2N/h1H2/q-1" RELATED InChI [ChEBI] +synonym: "NH2(-)" RELATED [IUPAC] +is_a: CHEBI:35106 ! nitrogen hydride +is_a: CHEBI:79389 ! monovalent inorganic anion +relationship: is_conjugate_acid_of CHEBI:29340 ! hydridonitrate(2-) +relationship: is_conjugate_base_of CHEBI:16134 ! ammonia + +[Term] +id: CHEBI:29340 +name: hydridonitrate(2-) +namespace: chebi_ontology +def: "A divalent inorganic anion resulting from the removal of two protons from ammonia." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "15.011" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "15.01468" RELATED MASS [ChEBI] +synonym: "[N--][H]" RELATED SMILES [ChEBI] +synonym: "azanediide" EXACT IUPAC_NAME [IUPAC] +synonym: "DZQYTNGKSBCIOE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "HN" RELATED FORMULA [ChEBI] +synonym: "hydridonitrate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "imide" RELATED [IUPAC] +synonym: "InChI=1S/HN/h1H/q-2" RELATED InChI [ChEBI] +synonym: "NH(2-)" RELATED [IUPAC] +is_a: CHEBI:35106 ! nitrogen hydride +is_a: CHEBI:79388 ! divalent inorganic anion +relationship: is_conjugate_base_of CHEBI:29337 ! azanide + +[Term] +id: CHEBI:29347 +name: monocarboxylic acid amide +namespace: chebi_ontology +alt_id: CHEBI:13211 +alt_id: CHEBI:22207 +alt_id: CHEBI:25383 +alt_id: CHEBI:6977 +def: "A carboxamide derived from a monocarboxylic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "41.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "42.01680" RELATED MASS [ChEBI] +synonym: "[*]N([*])C([*])=O" RELATED SMILES [ChEBI] +synonym: "CNOR3" RELATED FORMULA [ChEBI] +synonym: "monocarboxylic acid amides" RELATED [ChEBI] +is_a: CHEBI:37622 ! carboxamide + +[Term] +id: CHEBI:29360 +name: methanediide +namespace: chebi_ontology +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "14.016" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "14.02658" RELATED MASS [ChEBI] +synonym: "[CH2](2-)" RELATED [ChEBI] +synonym: "[H][C--][H]" RELATED SMILES [ChEBI] +synonym: "CH2" RELATED FORMULA [ChEBI] +synonym: "CH2(2-)" RELATED [IUPAC] +synonym: "dihydridocarbonate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/CH2/h1H2/q-2" RELATED InChI [ChEBI] +synonym: "methanediide" EXACT IUPAC_NAME [IUPAC] +synonym: "PZPOWPOFQLSNJO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:5915711 "Beilstein" +xref: Gmelin:322698 "Gmelin" +is_a: CHEBI:38222 ! hydrocarbyl anion +relationship: is_conjugate_base_of CHEBI:29438 ! methanide + +[Term] +id: CHEBI:29369 +name: peroxy group +namespace: chebi_ontology +subset: 3_STAR +synonym: "-OO-" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "31.990" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "31.99880" RELATED MASS [ChEBI] +synonym: "O2" RELATED FORMULA [ChEBI] +synonym: "peroxy" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33246 ! inorganic group + +[Term] +id: CHEBI:29371 +name: dioxygen(2+) +namespace: chebi_ontology +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "31.990" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "31.99880" RELATED MASS [ChEBI] +synonym: "[O+]#[O+]" RELATED SMILES [ChEBI] +synonym: "[O2](2+)" RELATED [ChEBI] +synonym: "dioxidanebis(ylium)" RELATED [IUPAC] +synonym: "dioxygen(2+)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/O2/c1-2/q+2" RELATED InChI [ChEBI] +synonym: "NIWXMCONPJOXBL-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "O2" RELATED FORMULA [ChEBI] +synonym: "O2(2+)" RELATED [IUPAC] +xref: Gmelin:48980 "Gmelin" +is_a: CHEBI:33263 ! diatomic oxygen + +[Term] +id: CHEBI:29438 +name: methanide +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "15.023" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "15.03452" RELATED MASS [ChEBI] +synonym: "[CH3](-)" RELATED [ChEBI] +synonym: "[H][C-]([H])[H]" RELATED SMILES [ChEBI] +synonym: "CH3" RELATED FORMULA [ChEBI] +synonym: "CH3(-)" RELATED [IUPAC] +synonym: "InChI=1S/CH3/h1H3/q-1" RELATED InChI [ChEBI] +synonym: "lambda(2)-methanuide" RELATED [IUPAC] +synonym: "LGRLWUINFJPLSH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "methanide" EXACT IUPAC_NAME [IUPAC] +synonym: "methyl anion" RELATED [IUPAC] +synonym: "trihydridocarbonate(1-)" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:1813938 "Beilstein" +xref: CAS:15194-58-8 "NIST Chemistry WebBook" +xref: Gmelin:259263 "Gmelin" +is_a: CHEBI:38222 ! hydrocarbyl anion +relationship: is_conjugate_acid_of CHEBI:29360 ! methanediide +relationship: is_conjugate_base_of CHEBI:16183 ! methane + +[Term] +id: CHEBI:2956 +name: azlocillin +namespace: chebi_ontology +alt_id: CHEBI:63225 +def: "A semisynthetic penicillin antibiotic used in treating infections caused by Pseudomonas aeruginosa, Escherichia coli, and Haemophilus influenzae." [] +subset: 3_STAR +synonym: "(2S,5R,6R)-3,3-dimethyl-7-oxo-6-{[(2R)-2-{[(2-oxoimidazolidin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2,2-dimethyl-6beta-[(2R)-2-{[(2-oxoimidazolidin-1-yl)carbonyl]amino}-2-phenylacetamido]penam-3alpha-carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "461.137" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "461.49200" RELATED MASS [ChEBI] +synonym: "[H][C@]12SC(C)(C)[C@@H](N1C(=O)[C@H]2NC(=O)[C@]([H])(NC(=O)N1CCNC1=O)c1ccccc1)C(O)=O" RELATED SMILES [ChEBI] +synonym: "azlocilina" RELATED INN [ChemIDplus] +synonym: "azlocillin" RELATED INN [KEGG_DRUG] +synonym: "azlocilline" RELATED INN [ChemIDplus] +synonym: "azlocillinum" RELATED INN [ChemIDplus] +synonym: "C20H23N5O6S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C20H23N5O6S/c1-20(2)13(17(28)29)25-15(27)12(16(25)32-20)22-14(26)11(10-6-4-3-5-7-10)23-19(31)24-9-8-21-18(24)30/h3-7,11-13,16H,8-9H2,1-2H3,(H,21,30)(H,22,26)(H,23,31)(H,28,29)/t11-,12-,13+,16-/m1/s1" RELATED InChI [ChEBI] +synonym: "JTWOMNBEOCYFNV-NFFDBFGFSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:5785146 "Beilstein" +xref: CAS:37091-66-0 "ChemIDplus" +xref: colombos:AZLOCILLIN +xref: Drug_Central:277 "DrugCentral" +xref: DrugBank:DB01061 +xref: KEGG:C06839 +xref: KEGG:D02339 +xref: LINCS:LSM-15179 +xref: Patent:CN101585844 +xref: Patent:FR2100682 +xref: Patent:US3933795 +xref: PMID:11036013 "Europe PMC" +xref: PMID:11397088 "Europe PMC" +xref: PMID:19292999 "Europe PMC" +xref: PMID:20363776 "Europe PMC" +xref: PMID:2068466 "Europe PMC" +xref: PMID:21219695 "Europe PMC" +xref: PMID:21360610 "Europe PMC" +xref: PMID:21883661 "Europe PMC" +xref: PMID:6212725 "Europe PMC" +xref: PMID:6231603 "Europe PMC" +xref: PMID:6289737 "Europe PMC" +xref: PMID:6810286 "Europe PMC" +xref: Reaxys:5785146 "Reaxys" +xref: Wikipedia:Azlocillin +is_a: CHEBI:17334 ! penicillin +is_a: CHEBI:72588 ! semisynthetic derivative +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: is_conjugate_acid_of CHEBI:51863 ! azlocillin(1-) + +[Term] +id: CHEBI:29640 +name: N-(3-oxohexanoyl)homoserine lactone +namespace: chebi_ontology +def: "A N-acyl homoserine lactone that is the monocarboxylic acid amide resulting from the formal condensation of the carboxy group of 3-oxohexanoic acid with the amino group of homoserine lactone." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "213.100" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "213.23040" RELATED MASS [ChEBI] +synonym: "3-oxo-C6-AHL" RELATED [ChEBI] +synonym: "3-oxo-N-(2-oxotetrahydrofuran-3-yl)hexanamide" EXACT IUPAC_NAME [IUPAC] +synonym: "3-oxo-N-(tetrahydro-2-oxo-3-furanyl)hexanamide" RELATED [ChemIDplus] +synonym: "AI-1 (Vibrio fischeri)" RELATED [MetaCyc] +synonym: "AI-1 lactone" RELATED [ChemIDplus] +synonym: "Autoinducer 1" RELATED [ChemIDplus] +synonym: "C10H15NO4" RELATED FORMULA [ChEBI] +synonym: "CCCC(=O)CC(=O)NC1CCOC1=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C10H15NO4/c1-2-3-7(12)6-9(13)11-8-4-5-15-10(8)14/h8H,2-6H2,1H3,(H,11,13)" RELATED InChI [ChEBI] +synonym: "Luciferase autoinducer" RELATED [ChemIDplus] +synonym: "N-(3-oxohexanoyl)-3-aminodihydro-2(3H)-furanone" RELATED [ChemIDplus] +synonym: "N-(3-Oxohexanoyl)homoserine lactone" EXACT [KEGG_COMPOUND] +synonym: "N-(3-oxohexanoyl)homoserine lactone" EXACT [ChemIDplus] +synonym: "N-(beta-ketocapryloyl)-homoserine lactone" RELATED [ChEBI] +synonym: "YRYOXRMDHALAFL-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:76924-95-3 "ChemIDplus" +xref: KEGG:C11839 +xref: MetaCyc:CPD-10780 +xref: PMID:7236614 "Europe PMC" +xref: Reaxys:13576940 "Reaxys" +is_a: CHEBI:83169 ! N-acyl homoserine lactone +relationship: has_functional_parent CHEBI:28422 ! 3-oxohexanoic acid + +[Term] +id: CHEBI:29678 +name: sodium arsenite +namespace: chebi_ontology +def: "An inoganic sodium salt with formula with formula NaAsO2." [] +subset: 3_STAR +synonym: "(NaAsO2)n" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "129.901" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "129.91020" RELATED MASS [ChEBI] +synonym: "[Na+].[O-][As]=O" RELATED SMILES [ChEBI] +synonym: "AsNaO2" RELATED FORMULA [ChEBI] +synonym: "catena-poly[(oxidoarsenate-mu-oxido)]sodium" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/AsHO2.Na/c2-1-3;/h(H,2,3);/q;+1/p-1" RELATED InChI [ChEBI] +synonym: "Na(+)n-(-As(O(-))O-)-n" RELATED [ChEBI] +synonym: "NaAsO2" RELATED [ChEBI] +synonym: "PTLRDCMBXHILCL-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "Sodium arsenite" EXACT [KEGG_COMPOUND] +synonym: "Sodium dioxoarsenate" RELATED [KEGG_COMPOUND] +synonym: "sodium meta-arsenite" RELATED [ChEBI] +synonym: "sodium metaarsenite" RELATED [ChemIDplus] +xref: CAS:7784-46-5 "KEGG COMPOUND" +xref: KEGG:C11906 +xref: MetaCyc:CPD0-1496 +xref: PMID:17070520 "Europe PMC" +xref: PMID:19131511 "Europe PMC" +xref: PMID:20423156 "Europe PMC" +xref: PMID:20598115 "Europe PMC" +xref: PMID:23194016 "Europe PMC" +xref: PMID:23694735 "Europe PMC" +xref: PMID:24004876 "Europe PMC" +xref: PMID:24100277 "Europe PMC" +xref: PMID:24519527 "Europe PMC" +xref: PMID:9580875 "Europe PMC" +xref: PMID:9649501 "Europe PMC" +xref: Reaxys:14201303 "Reaxys" +xref: Reaxys:16472677 "Reaxys" +xref: Wikipedia:Sodium_arsenite +is_a: CHEBI:22632 ! arsenic molecular entity +is_a: CHEBI:38702 ! inorganic sodium salt +relationship: has_role CHEBI:24527 ! herbicide +relationship: has_role CHEBI:24852 ! insecticide +relationship: has_role CHEBI:33282 ! antibacterial agent +relationship: has_role CHEBI:33288 ! rodenticide +relationship: has_role CHEBI:35610 ! antineoplastic agent +relationship: has_role CHEBI:35718 ! antifungal agent +relationship: has_role CHEBI:50903 ! carcinogenic agent + +[Term] +id: CHEBI:29746 +name: glycocholate +namespace: chebi_ontology +alt_id: CHEBI:14345 +alt_id: CHEBI:24377 +alt_id: CHEBI:58235 +def: "A cholanic acid conjugate anion that is the conjugate base of glycocholic acid, obtained by deprotonation of the carboxy group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "464.301" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "464.61482" RELATED MASS [ChEBI] +synonym: "[H][C@@]12C[C@H](O)CC[C@]1(C)[C@@]1([H])C[C@H](O)[C@]3(C)[C@]([H])(CC[C@@]3([H])[C@]1([H])[C@H](O)C2)[C@H](C)CCC(=O)NCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "C26H42NO6" RELATED FORMULA [ChEBI] +synonym: "glycocholate" EXACT [UniProt] +synonym: "InChI=1S/C26H43NO6/c1-14(4-7-22(31)27-13-23(32)33)17-5-6-18-24-19(12-21(30)26(17,18)3)25(2)9-8-16(28)10-15(25)11-20(24)29/h14-21,24,28-30H,4-13H2,1-3H3,(H,27,31)(H,32,33)/p-1/t14-,15+,16-,17-,18+,19+,20-,21+,24+,25+,26-/m1/s1" RELATED InChI [ChEBI] +synonym: "N-(3alpha,7alpha,12alpha-trihydroxy-5beta-cholan-24-oyl)glycinate" EXACT IUPAC_NAME [IUPAC] +synonym: "RFDAIACWWDREDC-FRVQLJSFSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3739464 "Beilstein" +xref: DrugBank:DB02691 +xref: KEGG:C01921 "ChEBI" +xref: Reaxys:3739464 "Reaxys" +is_a: CHEBI:131879 ! cholanic acid conjugate anion +is_a: CHEBI:57670 ! N-acylglycinate +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:17687 ! glycocholic acid + +[Term] +id: CHEBI:29747 +name: cholate +namespace: chebi_ontology +alt_id: CHEBI:11895 +alt_id: CHEBI:13978 +alt_id: CHEBI:20216 +alt_id: CHEBI:23168 +alt_id: CHEBI:57748 +def: "A bile acid anion that is the conjugate base of cholic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "3alpha,7alpha,12alpha-trihydroxy-5beta-cholan-24-oate" EXACT IUPAC_NAME [IUPAC] +synonym: "3alpha,7alpha,12alpha-trihydroxy-5beta-cholanate" RELATED [ChEBI] +synonym: "407.280" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "407.56346" RELATED MASS [ChEBI] +synonym: "[H][C@@]12C[C@H](O)CC[C@]1(C)[C@@]1([H])C[C@H](O)[C@]3(C)[C@]([H])(CC[C@@]3([H])[C@]1([H])[C@H](O)C2)[C@H](C)CCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "BHQCQFFYRZLCQQ-OELDTZBJSA-M" RELATED InChIKey [ChEBI] +synonym: "C24H39O5" RELATED FORMULA [ChEBI] +synonym: "cholate" EXACT [UniProt] +synonym: "InChI=1S/C24H40O5/c1-13(4-7-21(28)29)16-5-6-17-22-18(12-20(27)24(16,17)3)23(2)9-8-15(25)10-14(23)11-19(22)26/h13-20,22,25-27H,4-12H2,1-3H3,(H,28,29)/p-1/t13-,14+,15-,16-,17+,18+,19-,20+,22+,23+,24-/m1/s1" RELATED InChI [ChEBI] +xref: Beilstein:3915750 "Beilstein" +xref: Reaxys:3915750 "Reaxys" +is_a: CHEBI:131878 ! cholanic acid anion +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:16359 ! cholic acid + +[Term] +id: CHEBI:29785 +name: nitro group +namespace: chebi_ontology +subset: 3_STAR +synonym: "-NO2" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "45.993" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "46.00550" RELATED MASS [ChEBI] +synonym: "nitro" EXACT IUPAC_NAME [IUPAC] +synonym: "NO2" RELATED FORMULA [ChEBI] +is_a: CHEBI:33246 ! inorganic group +is_a: CHEBI:51144 ! nitrogen group + +[Term] +id: CHEBI:29793 +name: hydridodioxygen(1+) +namespace: chebi_ontology +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "32.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "33.00674" RELATED MASS [ChEBI] +synonym: "[H][O+]=O" RELATED SMILES [ChEBI] +synonym: "[HO2](+)" RELATED [ChEBI] +synonym: "dioxidenium" EXACT IUPAC_NAME [IUPAC] +synonym: "HO2" RELATED FORMULA [ChEBI] +synonym: "HO2(+)" RELATED [IUPAC] +synonym: "HOO(+)" RELATED [ChEBI] +synonym: "hydridodioxygen(1+)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/O2/c1-2/p+1" RELATED InChI [ChEBI] +synonym: "MYMOFIZGZYHOMD-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +xref: Gmelin:508 "Gmelin" +is_a: CHEBI:33693 ! oxygen hydride +relationship: is_conjugate_acid_of CHEBI:15379 ! dioxygen + +[Term] +id: CHEBI:29805 +name: glycolate +namespace: chebi_ontology +alt_id: CHEBI:14348 +alt_id: CHEBI:24388 +def: "A hydroxy monocarboxylic acid anion that is acetate where the methyl group has been hydroxylated." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "75.008" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "75.04342" RELATED MASS [ChEBI] +synonym: "AEMRFAOFKBGASW-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "C2H3O3" RELATED FORMULA [ChEBI] +synonym: "glycolate" EXACT [UniProt] +synonym: "hydroxyacetate" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C2H4O3/c3-1-2(4)5/h3H,1H2,(H,4,5)/p-1" RELATED InChI [ChEBI] +synonym: "OCC([O-])=O" RELATED SMILES [ChEBI] +xref: CAS:666-14-8 "Reaxys" +xref: DrugBank:DB03085 +xref: KEGG:C00160 "ChEBI" +xref: MetaCyc:GLYCOLLATE +xref: PMID:17190852 "Europe PMC" +xref: PMID:22093610 "Europe PMC" +xref: PMID:22207577 "Europe PMC" +xref: PMID:22268146 "Europe PMC" +xref: PMID:22327578 "Europe PMC" +xref: PMID:22394389 "Europe PMC" +xref: PMID:22446032 "Europe PMC" +xref: Reaxys:3903689 "Reaxys" +xref: UM-BBD_compID:c0008 "ChEBI" +is_a: CHEBI:36059 ! hydroxy monocarboxylic acid anion +relationship: has_functional_parent CHEBI:30089 ! acetate +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_base_of CHEBI:17497 ! glycolic acid + +[Term] +id: CHEBI:29806 +name: fumarate(2-) +namespace: chebi_ontology +alt_id: CHEBI:14284 +alt_id: CHEBI:24122 +alt_id: CHEBI:42511 +def: "A C4-dicarboxylate that is the E-isomer of but-2-enedioate(2-)" [] +subset: 3_STAR +synonym: "(2E)-but-2-enedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "(2E)-but-2-enedioate" RELATED [ChEBI] +synonym: "(E)-2-butenedioic acid, ion(2-)" RELATED [ChemIDplus] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "113.995" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "114.05628" RELATED MASS [ChEBI] +synonym: "[O-]C(=O)\\C=C\\C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C4H2O4" RELATED FORMULA [ChEBI] +synonym: "FUMARATE" RELATED [PDBeChem] +synonym: "fumarate" RELATED [UniProt] +synonym: "InChI=1S/C4H4O4/c5-3(6)1-2-4(7)8/h1-2H,(H,5,6)(H,7,8)/p-2/b2-1+" RELATED InChI [ChEBI] +synonym: "VZCYOOQTPOCHFL-OWOJBTEDSA-L" RELATED InChIKey [ChEBI] +xref: Beilstein:1861276 "Beilstein" +xref: CAS:142-42-7 "ChemIDplus" +xref: DrugBank:DB01677 +xref: Gmelin:325288 "Gmelin" +xref: KEGG:C00122 "ChEBI" +xref: MetaCyc:FUM +xref: PDBeChem:FMR +xref: PMID:15618158 "Europe PMC" +xref: PMID:16857679 "Europe PMC" +xref: PMID:17190852 "Europe PMC" +xref: PMID:22052553 "Europe PMC" +xref: PMID:22405071 "Europe PMC" +xref: Reaxys:1861276 "Reaxys" +xref: UM-BBD_compID:c0111 "ChEBI" +is_a: CHEBI:36180 ! butenedioate +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:37154 ! fumarate(1-) + +[Term] +id: CHEBI:29864 +name: mannitol +namespace: chebi_ontology +alt_id: CHEBI:14574 +alt_id: CHEBI:25163 +def: "A hexitol produced by a variety of organisms including bacteria, fungi, lichens and plants." [] +subset: 3_STAR +synonym: "C6H14O6" RELATED FORMULA [ChEBI] +synonym: "mannitol" EXACT IUPAC_NAME [IUPAC] +synonym: "mannitol" EXACT [UniProt] +xref: PMID:24269997 "Europe PMC" +xref: PMID:24323504 "Europe PMC" +xref: PMID:24374122 "Europe PMC" +xref: PMID:24861101 "Europe PMC" +xref: Wikipedia:Mannitol +is_a: CHEBI:24583 ! hexitol +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:29917 +name: thiol group +namespace: chebi_ontology +alt_id: CHEBI:26821 +alt_id: CHEBI:29916 +subset: 3_STAR +synonym: "-SH" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "32.980" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "33.07394" RELATED MASS [ChEBI] +synonym: "HS" RELATED FORMULA [ChEBI] +synonym: "HS-" RELATED [IUPAC] +synonym: "mercapto group" RELATED [ChEBI] +synonym: "Mercaptogruppe" RELATED [ChEBI] +synonym: "Merkaptogruppe" RELATED [ChEBI] +synonym: "sulfanyl" EXACT IUPAC_NAME [IUPAC] +synonym: "sulfhydryl group" RELATED [ChEBI] +synonym: "Sulfhydrylgruppe" RELATED [ChEBI] +synonym: "sulphydryl group" RELATED [ChEBI] +synonym: "thiol" EXACT IUPAC_NAME [IUPAC] +synonym: "thiol group" EXACT [UniProt] +synonym: "Thiolgruppe" RELATED [ChEBI] +is_a: CHEBI:33246 ! inorganic group +relationship: is_substituent_group_from CHEBI:16136 ! hydrogen sulfide + +[Term] +id: CHEBI:29919 +name: hydrosulfide +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "32.980" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "33.07394" RELATED MASS [ChEBI] +synonym: "[S-][H]" RELATED SMILES [ChEBI] +synonym: "HS" RELATED FORMULA [ChEBI] +synonym: "HS anion" RELATED [NIST_Chemistry_WebBook] +synonym: "HS(-)" RELATED [IUPAC] +synonym: "hydrogen sulfide" RELATED [UniProt] +synonym: "hydrogen(sulfide)(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrosulfide" EXACT [IUPAC] +synonym: "InChI=1S/H2S/h1H2/p-1" RELATED InChI [ChEBI] +synonym: "RWSOTUBLDIXVET-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "sulfanide" EXACT IUPAC_NAME [IUPAC] +xref: CAS:15035-72-0 "ChemIDplus" +xref: Gmelin:24766 "Gmelin" +is_a: CHEBI:33535 ! sulfur hydride +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:15138 ! sulfide(2-) +relationship: is_conjugate_base_of CHEBI:16136 ! hydrogen sulfide + +[Term] +id: CHEBI:29922 +name: sulfo group +namespace: chebi_ontology +subset: 3_STAR +synonym: "-S(O)2(OH)" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "80.965" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "81.07214" RELATED MASS [ChEBI] +synonym: "HO3S" RELATED FORMULA [ChEBI] +synonym: "hydroxydioxo-lambda(6)-sulfanyl" EXACT IUPAC_NAME [IUPAC] +synonym: "hydroxysulfonyl" EXACT IUPAC_NAME [IUPAC] +synonym: "sulfo" EXACT IUPAC_NAME [IUPAC] +synonym: "SULFO GROUP" EXACT [PDBeChem] +xref: PDBeChem:SFO +is_a: CHEBI:33246 ! inorganic group +relationship: is_substituent_group_from CHEBI:29214 ! sulfonic acid + +[Term] +id: CHEBI:29924 +name: hydrogenselenite +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "127.96614" RELATED MASS [ChEBI] +synonym: "128.909" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[SeO2(OH)](-)" RELATED [IUPAC] +synonym: "HO3Se" RELATED FORMULA [ChEBI] +synonym: "HSeO3(-)" RELATED [IUPAC] +synonym: "hydrogen selenite" RELATED [ChemIDplus] +synonym: "hydrogenselenite(1-)" RELATED [IUPAC] +synonym: "hydroxidodioxidoselenate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H2O3Se/c1-4(2)3/h(H2,1,2,3)/p-1" RELATED InChI [ChEBI] +synonym: "MCAHWIHFGHIESP-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "O[Se]([O-])=O" RELATED SMILES [ChEBI] +xref: CAS:20638-10-2 "ChemIDplus" +xref: Gmelin:164165 "Gmelin" +is_a: CHEBI:33488 ! selenium oxoanion +relationship: is_conjugate_acid_of CHEBI:18212 ! selenite(2-) +relationship: is_conjugate_base_of CHEBI:26642 ! selenous acid + +[Term] +id: CHEBI:29995 +name: aspartate(2-) +namespace: chebi_ontology +def: "A C4-dicarboxylate that is the dianion obtained by the deprotonation of both the carboxy groups of aspartic acid." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "131.022" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "131.08684" RELATED MASS [ChEBI] +synonym: "2-aminobutanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "2-aminosuccinate" RELATED [ChEBI] +synonym: "aspartate" EXACT IUPAC_NAME [IUPAC] +synonym: "aspartate(2-)" EXACT [JCBN] +synonym: "aspartic acid dianion" RELATED [JCBN] +synonym: "C4H5NO4" RELATED FORMULA [ChEBI] +synonym: "CKLJMWTZIZZHCS-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H7NO4/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H,6,7)(H,8,9)/p-2" RELATED InChI [ChEBI] +synonym: "NC(CC([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +is_a: CHEBI:132943 ! aspartate +is_a: CHEBI:61336 ! C4-dicarboxylate +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:35391 ! aspartate(1-) + +[Term] +id: CHEBI:30031 +name: succinate(2-) +namespace: chebi_ontology +alt_id: CHEBI:15125 +alt_id: CHEBI:22941 +alt_id: CHEBI:26803 +def: "A dicarboxylic acid dianion resulting from the removal of a proton from both of the carboxy groups of succinic acid." [] +subset: 3_STAR +synonym: "(-)OOC-CH2-CH2-COO(-)" RELATED [ChEBI] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "116.011" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "116.07216" RELATED MASS [ChEBI] +synonym: "[O-]C(=O)CCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "butanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "butanedioic acid, ion(2-)" RELATED [ChemIDplus] +synonym: "C4H4O4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H6O4/c5-3(6)1-2-4(7)8/h1-2H2,(H,5,6)(H,7,8)/p-2" RELATED InChI [ChEBI] +synonym: "KDYFGRWQOYBRFD-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "succinate" RELATED [UniProt] +xref: Beilstein:1863859 "Beilstein" +xref: CAS:56-14-4 "ChemIDplus" +xref: Gmelin:240255 "Gmelin" +xref: MetaCyc:SUC +xref: PMID:17190852 "Europe PMC" +xref: Reaxys:1863859 "Reaxys" +xref: UM-BBD_compID:c0312 "ChEBI" +is_a: CHEBI:26806 ! succinate +is_a: CHEBI:61336 ! C4-dicarboxylate +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:30779 ! succinate(1-) + +[Term] +id: CHEBI:30050 +name: gold(0) +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "196.96655" RELATED MASS [ChEBI] +synonym: "196.967" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[Au]" RELATED SMILES [ChEBI] +synonym: "Au" RELATED FORMULA [ChEBI] +synonym: "Au(0)" RELATED [ChEBI] +synonym: "Aun" RELATED [IUPAC] +synonym: "colloidal gold" RELATED [NIST_Chemistry_WebBook] +synonym: "gold" EXACT IUPAC_NAME [IUPAC] +synonym: "gold flake" RELATED [NIST_Chemistry_WebBook] +synonym: "gold leaf" RELATED [NIST_Chemistry_WebBook] +synonym: "gold(0)" EXACT [IUPAC] +synonym: "InChI=1S/Au" RELATED InChI [ChEBI] +synonym: "PCHJSUWPFVWCPO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7440-57-5 "NIST Chemistry WebBook" +is_a: CHEBI:33970 ! elemental gold + +[Term] +id: CHEBI:30087 +name: guanidinium +namespace: chebi_ontology +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "60.056" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "60.07856" RELATED MASS [ChEBI] +synonym: "[C(NH2)3](+)" RELATED [ChEBI] +synonym: "CH6N3" RELATED FORMULA [ChEBI] +synonym: "diaminomethaniminium" RELATED [IUPAC] +synonym: "guanidine" RELATED [UniProt] +synonym: "guanidinium" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/CH5N3/c2-1(3)4/h(H5,2,3,4)/p+1" RELATED InChI [ChEBI] +synonym: "NC(N)=[NH2+]" RELATED SMILES [ChEBI] +synonym: "ZRALSGWEFCBTJO-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +xref: Beilstein:1902006 "Beilstein" +xref: Gmelin:239627 "Gmelin" +is_a: CHEBI:60251 ! guanidinium ion +relationship: is_conjugate_acid_of CHEBI:42820 ! guanidine +relationship: is_conjugate_acid_of CHEBI:616459 ! carbamimidoylazanium + +[Term] +id: CHEBI:30089 +name: acetate +namespace: chebi_ontology +alt_id: CHEBI:13704 +alt_id: CHEBI:22165 +alt_id: CHEBI:40480 +def: "A monocarboxylic acid anion resulting from the removal of a proton from the carboxy group of acetic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "59.013" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "59.04402" RELATED MASS [ChEBI] +synonym: "acetate" EXACT [UniProt] +synonym: "acetate" EXACT IUPAC_NAME [IUPAC] +synonym: "ACETATE ION" RELATED [PDBeChem] +synonym: "acetic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "Azetat" RELATED [ChEBI] +synonym: "C2H3O2" RELATED FORMULA [ChEBI] +synonym: "CC([O-])=O" RELATED SMILES [ChEBI] +synonym: "CH3-COO(-)" RELATED [IUPAC] +synonym: "Ethanoat" RELATED [ChEBI] +synonym: "ethanoate" RELATED [ChEBI] +synonym: "InChI=1S/C2H4O2/c1-2(3)4/h1H3,(H,3,4)/p-1" RELATED InChI [ChEBI] +synonym: "MeCO2 anion" RELATED [NIST_Chemistry_WebBook] +synonym: "QTBSBXVTEAMEQO-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:1901470 "Beilstein" +xref: CAS:71-50-1 "NIST Chemistry WebBook" +xref: colombos:ACETATE +xref: DrugBank:DB03166 +xref: Gmelin:1379 "Gmelin" +xref: KEGG:C00033 "ChEBI" +xref: MetaCyc:ACET +xref: PDBeChem:ACT +xref: PMID:17190852 "Europe PMC" +xref: PMID:22211106 "Europe PMC" +xref: PMID:22371380 "Europe PMC" +xref: Reaxys:1901470 "Reaxys" +xref: UM-BBD_compID:c0050 "ChEBI" +xref: Wikipedia:Acetate +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:15366 ! acetic acid +relationship: MCO:0000858 MCO:0000864 ! sucrose 15% carbon source +property_value: http://purl.obolibrary.org/obo/chebi/formula "C2H3O2" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C2H4O2/c1-2(3)4/h1H3,(H,3,4)/p-1" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/inchikey "QTBSBXVTEAMEQO-UHFFFAOYSA-M" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/mass "59.04402" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "59.013" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/smiles "CC([O-])=O" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:3020 +name: benzalkonium chloride +namespace: chebi_ontology +def: "A class of quaternary ammonium chloride salts in which the nitrogen is substituted by a benzyl group, two methyl groups and an even-numbered alkyl chain." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "170.074" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "170.65900" RELATED MASS [ChEBI] +synonym: "[Cl-].C[N+](C)([*])Cc1ccccc1" RELATED SMILES [ChEBI] +synonym: "ADBAC" RELATED [ChEBI] +synonym: "Alkyl dimethylbenzyl ammonium chloride" RELATED [ChemIDplus] +synonym: "Alkylbenzyldimethylammonium chloride" RELATED [ChemIDplus] +synonym: "Alkyldimethyl(phenylmethyl)quaternary ammonium chlorides" RELATED [ChemIDplus] +synonym: "Alkyldimethylbenzylammonium chloride" RELATED [ChemIDplus] +synonym: "benzalkonii chloridum" RELATED INN [ChemIDplus] +synonym: "Benzalkonium chloride" EXACT [KEGG_COMPOUND] +synonym: "benzalkonium chloride" RELATED INN [KEGG_DRUG] +synonym: "benzalkonium chlorides" RELATED [ChEBI] +synonym: "C9H13ClNR" RELATED FORMULA [ChEBI] +synonym: "chlorure de benzalkonium" RELATED INN [ChemIDplus] +synonym: "cloruro de benzalconio" RELATED INN [ChemIDplus] +xref: CAS:8001-54-5 "ChemIDplus" +xref: colombos:BENZALKONIUM_CHLORIDE +xref: KEGG:C08037 +xref: KEGG:D00857 +xref: PMID:17660979 "Europe PMC" +xref: PMID:22692451 "Europe PMC" +xref: PMID:23078159 "Europe PMC" +xref: PMID:23102555 "Europe PMC" +xref: PMID:23278376 "Europe PMC" +xref: PMID:23439005 "Europe PMC" +xref: PMID:23519403 "Europe PMC" +xref: PMID:23542350 "Europe PMC" +xref: PMID:23651563 "Europe PMC" +xref: PMID:23682619 "Europe PMC" +xref: PMID:23726247 "Europe PMC" +xref: PMID:23792171 "Europe PMC" +xref: PMID:23861389 "Europe PMC" +xref: PMID:23892748 "Europe PMC" +xref: PMID:23893017 "Europe PMC" +xref: PMID:23987445 "Europe PMC" +xref: PMID:23987991 "Europe PMC" +xref: PMID:23991114 "Europe PMC" +xref: PMID:7526642 "Europe PMC" +is_a: CHEBI:35273 ! quaternary ammonium salt +is_a: CHEBI:36094 ! organic chloride salt +relationship: has_role CHEBI:27780 ! detergent +relationship: has_role CHEBI:33282 ! antibacterial agent +relationship: has_role CHEBI:48218 ! antiseptic drug +relationship: has_role CHEBI:48219 ! disinfectant + +[Term] +id: CHEBI:30297 +name: antimonite +namespace: chebi_ontology +def: "A trivalent inorganic anion obtained by removal of all three protons from antimonous acid." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "168.889" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "169.75820" RELATED MASS [ChEBI] +synonym: "[O-][Sb]([O-])[O-]" RELATED SMILES [ChEBI] +synonym: "[SbO3](3-)" RELATED [ChEBI] +synonym: "antimonite" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/3O.Sb/q3*-1;" RELATED InChI [ChEBI] +synonym: "JXYAODGLKNBUTA-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "O3Sb" RELATED FORMULA [ChEBI] +synonym: "SbO3(3-)" RELATED [IUPAC] +synonym: "trioxidoantimonate(3-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxoantimonate(3-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxoantimonate(III)" EXACT IUPAC_NAME [IUPAC] +xref: PMID:17419726 "Europe PMC" +is_a: CHEBI:36921 ! antimony oxoanion +is_a: CHEBI:79387 ! trivalent inorganic anion +relationship: is_conjugate_base_of CHEBI:49870 ! antimonous acid + +[Term] +id: CHEBI:30347 +name: ethylenediamine +namespace: chebi_ontology +def: "An alkane-alpha,omega-diamine in which the alkane is ethane." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,2-ethanediamine" RELATED [IUPAC] +synonym: "60.069" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "60.09840" RELATED MASS [ChEBI] +synonym: "C2H8N2" RELATED FORMULA [ChEBI] +synonym: "en" RELATED [IUPAC] +synonym: "ethane-1,2-diamine" EXACT IUPAC_NAME [IUPAC] +synonym: "ethylenediamine" EXACT [IUPAC] +synonym: "InChI=1S/C2H8N2/c3-1-2-4/h1-4H2" RELATED InChI [ChEBI] +synonym: "NCCN" RELATED SMILES [ChEBI] +synonym: "PIICEJLVQHRZGT-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:605263 "Beilstein" +xref: CAS:107-15-3 "NIST Chemistry WebBook" +xref: Gmelin:1098 "Gmelin" +xref: HMDB:HMDB31225 +xref: KEGG:D01114 +xref: MetaCyc:CPD-3682 +xref: PDBeChem:EDN +xref: PMID:21616561 "Europe PMC" +xref: PMID:3692019 "Europe PMC" +xref: PMID:7070713 "Europe PMC" +xref: Reaxys:605263 "Reaxys" +xref: Wikipedia:Ethylenediamine +is_a: CHEBI:35411 ! alkane-alpha,omega-diamine +relationship: has_parent_hydride CHEBI:42266 ! ethane +relationship: has_role CHEBI:51373 ! GABA agonist + +[Term] +id: CHEBI:30351 +name: 2,2'-bipyridine +namespace: chebi_ontology +def: "A bipyridine in which the two pyridine moieties are linked by a bond between positions C-2 and C-2'." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "156.069" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "156.18400" RELATED MASS [ChEBI] +synonym: "2,2'-Bipyridin" RELATED [ChemIDplus] +synonym: "2,2'-bipyridine" EXACT IUPAC_NAME [IUPAC] +synonym: "2,2'-bipyridyl" RELATED [IUPAC] +synonym: "2,2'-dipyridine" RELATED [ChemIDplus] +synonym: "2,2'-dipyridyl" RELATED [ChemIDplus] +synonym: "2-(2-pyridyl)pyridine" RELATED [ChemIDplus] +synonym: "alpha,alpha'-bipyridine" RELATED [NIST_Chemistry_WebBook] +synonym: "alpha,alpha'-bipyridyl" RELATED [NIST_Chemistry_WebBook] +synonym: "alpha,alpha'-dipyridine" RELATED [NIST_Chemistry_WebBook] +synonym: "alpha,alpha'-dipyridyl" RELATED [NIST_Chemistry_WebBook] +synonym: "bpy" RELATED [IUPAC] +synonym: "C10H8N2" RELATED FORMULA [ChEBI] +synonym: "c1ccc(nc1)-c1ccccn1" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C10H8N2/c1-3-7-11-9(5-1)10-6-2-4-8-12-10/h1-8H" RELATED InChI [ChEBI] +synonym: "ROFVEXUMMXZLPA-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:113089 "Beilstein" +xref: CAS:366-18-7 "ChemIDplus" +xref: Gmelin:3720 "Gmelin" +xref: Gmelin:936807 "Gmelin" +xref: MetaCyc:CPD-8819 +xref: PMID:11564534 "Europe PMC" +xref: PMID:15998024 "Europe PMC" +xref: Reaxys:113089 "Reaxys" +xref: Wikipedia:2\,2%27-Bipyridine +is_a: CHEBI:35545 ! bipyridine +relationship: has_role CHEBI:52214 ! ligand + +[Term] +id: CHEBI:30356 +name: isobutyl group +namespace: chebi_ontology +subset: 3_STAR +synonym: "(CH3)2CH-CH2-" RELATED [IUPAC] +synonym: "-CH2-CH(CH3)2" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-methylpropan-1-ido" EXACT IUPAC_NAME [IUPAC] +synonym: "2-methylpropyl" EXACT IUPAC_NAME [IUPAC] +synonym: "57.070" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "57.11426" RELATED MASS [ChEBI] +synonym: "C4H9" RELATED FORMULA [ChEBI] +synonym: "iBu" RELATED [CBN] +synonym: "isobutyl" EXACT IUPAC_NAME [IUPAC] +synonym: "leucine side-chain" RELATED [ChEBI] +is_a: CHEBI:22323 ! alkyl group +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group +relationship: is_substituent_group_from CHEBI:30363 ! isobutane + +[Term] +id: CHEBI:30362 +name: isopentane +namespace: chebi_ontology +def: "An alkane that is butane substituted by a methyl group at position 2." [] +subset: 3_STAR +synonym: "(CH3)2CH-CH2-CH3" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,1,2-trimethylethane" RELATED [NIST_Chemistry_WebBook] +synonym: "1,1-dimethylpropane" RELATED [NIST_Chemistry_WebBook] +synonym: "2-methylbutane" EXACT IUPAC_NAME [IUPAC] +synonym: "72.094" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "72.14878" RELATED MASS [ChEBI] +synonym: "C5H12" RELATED FORMULA [ChEBI] +synonym: "CCC(C)C" RELATED SMILES [ChEBI] +synonym: "dimethylethylmethane" RELATED [ChemIDplus] +synonym: "InChI=1S/C5H12/c1-4-5(2)3/h5H,4H2,1-3H3" RELATED InChI [ChEBI] +synonym: "iso-C5H12" RELATED [NIST_Chemistry_WebBook] +synonym: "iso-pentane" RELATED [NIST_Chemistry_WebBook] +synonym: "isoamylhydride" RELATED [ChemIDplus] +synonym: "isopentane" EXACT IUPAC_NAME [IUPAC] +synonym: "QWTDNUCVQCZILF-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "R-601a" RELATED [ChEBI] +xref: Beilstein:1730723 "Beilstein" +xref: CAS:78-78-4 "ChemIDplus" +xref: Gmelin:49318 "Gmelin" +xref: PMID:21481069 "Europe PMC" +xref: PMID:23904008 "Europe PMC" +xref: PMID:24833189 "Europe PMC" +xref: PMID:24932627 "Europe PMC" +xref: Reaxys:1730723 "Reaxys" +xref: Wikipedia:Isopentane +is_a: CHEBI:18310 ! alkane +relationship: has_role CHEBI:78433 ! refrigerant + +[Term] +id: CHEBI:30363 +name: isobutane +namespace: chebi_ontology +def: "An alkane that is propane substituted by a methyl group at position 2." [] +subset: 3_STAR +synonym: "(CH3)2CH-CH3" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-methylpropane" EXACT IUPAC_NAME [IUPAC] +synonym: "58.078" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "58.12220" RELATED MASS [ChEBI] +synonym: "C4H10" RELATED FORMULA [ChEBI] +synonym: "CC(C)C" RELATED SMILES [ChEBI] +synonym: "E943b" RELATED [ChEBI] +synonym: "InChI=1S/C4H10/c1-4(2)3/h4H,1-3H3" RELATED InChI [ChEBI] +synonym: "isobutane" EXACT IUPAC_NAME [IUPAC] +synonym: "NNPPMTNAJDCUHE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "R-600a" RELATED [ChEBI] +xref: Beilstein:1730720 "Beilstein" +xref: CAS:75-28-5 "NIST Chemistry WebBook" +xref: Gmelin:1301 "Gmelin" +xref: KEGG:D04623 +xref: PMID:24179026 "Europe PMC" +xref: PMID:24464945 "Europe PMC" +xref: Reaxys:1730720 "Reaxys" +xref: Wikipedia:Isobutane +is_a: CHEBI:18310 ! alkane +relationship: has_role CHEBI:78017 ! food propellant +relationship: has_role CHEBI:78433 ! refrigerant + +[Term] +id: CHEBI:30408 +name: iron-sulfur cluster +namespace: chebi_ontology +alt_id: CHEBI:24878 +alt_id: CHEBI:5976 +def: "An iron-sulfur cluster is a unit comprising two or more iron atoms and bridging sulfur ligands." [] +subset: 3_STAR +synonym: "[nFe-xS]" RELATED [IUBMB] +synonym: "Fe-S clusters" RELATED [IUBMB] +synonym: "Iron-sulfur" RELATED [KEGG_COMPOUND] +synonym: "Iron-sulfur cluster" EXACT [KEGG_COMPOUND] +synonym: "iron-sulfur cluster" EXACT IUPAC_NAME [IUPAC] +synonym: "iron-sulfur cluster" EXACT [UniProt] +synonym: "iron-sulfur clusters" RELATED [ChEBI] +xref: COMe:BIM000452 +xref: KEGG:C00824 +is_a: CHEBI:25214 ! metal-sulfur cluster +is_a: CHEBI:33892 ! iron coordination entity + +[Term] +id: CHEBI:30412 +name: monoatomic dication +namespace: chebi_ontology +alt_id: CHEBI:23856 +alt_id: CHEBI:4665 +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "0.00000" RELATED MASS [ChEBI] +synonym: "[*++]" RELATED SMILES [ChEBI] +synonym: "Divalent cation" RELATED [KEGG_COMPOUND] +synonym: "divalent cation" RELATED [UniProt] +synonym: "divalent inorganic cations" RELATED [ChEBI] +synonym: "monoatomic dications" RELATED [ChEBI] +xref: KEGG:C00572 +is_a: CHEBI:23906 ! monoatomic cation + +[Term] +id: CHEBI:30452 +name: tellurium atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "127.60000" RELATED MASS [ChEBI] +synonym: "129.906" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "52Te" RELATED [IUPAC] +synonym: "[Te]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/Te" RELATED InChI [ChEBI] +synonym: "PORWMNRCUJJQNO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Te" RELATED FORMULA [ChEBI] +synonym: "Te" RELATED [IUPAC] +synonym: "Tellur" RELATED [ChEBI] +synonym: "tellure" RELATED [ChEBI] +synonym: "tellurium" EXACT IUPAC_NAME [IUPAC] +synonym: "tellurium" RELATED [ChEBI] +synonym: "teluro" RELATED [ChEBI] +xref: CAS:13494-80-9 "ChemIDplus" +xref: Gmelin:16309 "Gmelin" +xref: WebElements:Te +is_a: CHEBI:137980 ! metalloid atom +is_a: CHEBI:33303 ! chalcogen + +[Term] +id: CHEBI:30465 +name: tellurous acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "177.61408" RELATED MASS [ChEBI] +synonym: "179.907" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[H]O[Te](=O)O[H]" RELATED SMILES [ChEBI] +synonym: "[TeO(OH)2]" RELATED [IUPAC] +synonym: "dihydroxidooxidotellurium" EXACT IUPAC_NAME [IUPAC] +synonym: "H2O3Te" RELATED FORMULA [ChEBI] +synonym: "H2TeO3" RELATED [IUPAC] +synonym: "InChI=1S/H2O3Te/c1-4(2)3/h(H2,1,2,3)" RELATED InChI [ChEBI] +synonym: "SITVSCPRJNYAGV-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "tellurige Saeure" RELATED [ChEBI] +synonym: "tellurous acid" EXACT IUPAC_NAME [IUPAC] +xref: Gmelin:25627 "Gmelin" +is_a: CHEBI:33519 ! tellurium oxoacid +relationship: is_conjugate_acid_of CHEBI:33522 ! hydrogentellurite + +[Term] +id: CHEBI:30477 +name: tellurite +namespace: chebi_ontology +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "175.59820" RELATED MASS [ChEBI] +synonym: "177.891" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[O-][Te]([O-])=O" RELATED SMILES [ChEBI] +synonym: "[TeO3](2-)" RELATED [ChEBI] +synonym: "InChI=1S/H2O3Te/c1-4(2)3/h(H2,1,2,3)/p-2" RELATED InChI [ChEBI] +synonym: "O3Te" RELATED FORMULA [ChEBI] +synonym: "SITVSCPRJNYAGV-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "Tellurate (TeO3(2-))" RELATED [ChemIDplus] +synonym: "tellurite" EXACT [UniProt] +synonym: "TeO3(2-)" RELATED [IUPAC] +synonym: "trioxidotellurate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxotellurate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxotellurate(IV)" EXACT IUPAC_NAME [IUPAC] +xref: CAS:15852-22-9 "ChemIDplus" +xref: colombos:TELLURITE +xref: Gmelin:100741 "Gmelin" +xref: Wikipedia:Tellurite_(ion) +is_a: CHEBI:33520 ! tellurium oxoanion +relationship: is_conjugate_base_of CHEBI:33522 ! hydrogentellurite + +[Term] +id: CHEBI:30488 +name: sulfonium +namespace: chebi_ontology +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "34.996" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "35.08982" RELATED MASS [ChEBI] +synonym: "[H][S+]([H])[H]" RELATED SMILES [ChEBI] +synonym: "[SH3](+)" RELATED [ChEBI] +synonym: "H3S" RELATED FORMULA [ChEBI] +synonym: "H3S(+)" RELATED [IUPAC] +synonym: "H3S+" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/H2S/h1H2/p+1" RELATED InChI [ChEBI] +synonym: "RWSOTUBLDIXVET-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "sulfanium" EXACT IUPAC_NAME [IUPAC] +synonym: "sulfonium" EXACT IUPAC_NAME [IUPAC] +synonym: "sulphonium" RELATED [ChEBI] +synonym: "trihydridosulfur(1+)" EXACT IUPAC_NAME [IUPAC] +xref: CAS:18155-21-0 "NIST Chemistry WebBook" +xref: Gmelin:307 "Gmelin" +is_a: CHEBI:26830 ! sulfonium compound +is_a: CHEBI:33535 ! sulfur hydride +is_a: CHEBI:50313 ! onium cation +relationship: is_conjugate_acid_of CHEBI:16136 ! hydrogen sulfide + +[Term] +id: CHEBI:30512 +name: silver atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "106.905" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "107.86820" RELATED MASS [ChEBI] +synonym: "47Ag" RELATED [IUPAC] +synonym: "[Ag]" RELATED SMILES [ChEBI] +synonym: "Ag" RELATED [IUPAC] +synonym: "Ag" RELATED FORMULA [ChEBI] +synonym: "argent" RELATED [ChEBI] +synonym: "argentum" RELATED [IUPAC] +synonym: "BQCADISMDOOEFD-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/Ag" RELATED InChI [ChEBI] +synonym: "plata" RELATED [ChEBI] +synonym: "Silber" RELATED [ChemIDplus] +synonym: "silver" EXACT IUPAC_NAME [IUPAC] +synonym: "silver" RELATED [ChEBI] +xref: CAS:7440-22-4 "ChemIDplus" +xref: WebElements:Ag +is_a: CHEBI:33366 ! copper group element atom + +[Term] +id: CHEBI:30513 +name: antimony atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "120.904" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "121.76000" RELATED MASS [ChEBI] +synonym: "51Sb" RELATED [IUPAC] +synonym: "[Sb]" RELATED SMILES [ChEBI] +synonym: "antimoine" RELATED [ChEBI] +synonym: "Antimon" RELATED [ChEBI] +synonym: "antimonio" RELATED [ChEBI] +synonym: "antimony" EXACT IUPAC_NAME [IUPAC] +synonym: "antimony" RELATED [ChEBI] +synonym: "InChI=1S/Sb" RELATED InChI [ChEBI] +synonym: "Sb" RELATED [IUPAC] +synonym: "Sb" RELATED FORMULA [ChEBI] +synonym: "stibium" RELATED [IUPAC] +synonym: "WATWJIUSRGPENY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: WebElements:Sb +is_a: CHEBI:137980 ! metalloid atom +is_a: CHEBI:33300 ! pnictogen + +[Term] +id: CHEBI:30531 +name: pimelic acid +namespace: chebi_ontology +alt_id: CHEBI:20709 +alt_id: CHEBI:24517 +alt_id: CHEBI:44980 +def: "An alpha,omega-dicarboxylic acid that is pentane with two carboxylic acid groups at positions C-1 and C-5." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,5-pentanedicarboxylic acid" RELATED [ChemIDplus] +synonym: "160.074" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "160.16778" RELATED MASS [ChEBI] +synonym: "6-carboxyhexanoic acid" RELATED [ChEBI] +synonym: "C7H12O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Heptanedioic acid" RELATED [KEGG_COMPOUND] +synonym: "heptanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C7H12O4/c8-6(9)4-2-1-3-5-7(10)11/h1-5H2,(H,8,9)(H,10,11)" RELATED InChI [ChEBI] +synonym: "OC(=O)CCCCCC(O)=O" RELATED SMILES [ChEBI] +synonym: "Pimelate" RELATED [KEGG_COMPOUND] +synonym: "PIMELIC ACID" EXACT [PDBeChem] +synonym: "Pimelic acid" EXACT [KEGG_COMPOUND] +synonym: "pimelic acid" EXACT [UniProt] +synonym: "WLJVNTCWHIRURA-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1210024 "Beilstein" +xref: CAS:111-16-0 "KEGG COMPOUND" +xref: DrugBank:DB01856 +xref: Gmelin:261058 "Gmelin" +xref: HMDB:HMDB00857 +xref: KEGG:C02656 +xref: KNApSAcK:C00001199 +xref: LIPID_MAPS_instance:LMFA01170051 "LIPID MAPS" +xref: MetaCyc:CPD-205 +xref: PDBeChem:PML +xref: PMID:20693992 "Europe PMC" +xref: PMID:21437340 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:24486440 "Europe PMC" +xref: Reaxys:1210024 "Reaxys" +xref: Wikipedia:Pimelic_acid +is_a: CHEBI:28383 ! alpha,omega-dicarboxylic acid +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_conjugate_acid_of CHEBI:17774 ! pimelate(1-) + +[Term] +id: CHEBI:30612 +name: D-glucarate(2-) +namespace: chebi_ontology +alt_id: CHEBI:12953 +alt_id: CHEBI:20980 +alt_id: CHEBI:42731 +def: "Dicarboxylate anion of D-glucaric acid; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2R,3S,4S,5S)-2,3,4,5-tetrahydroxyhexanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "208.022" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "208.12292" RELATED MASS [ChEBI] +synonym: "C6H8O8" RELATED FORMULA [ChEBI] +synonym: "D-GLUCARATE" RELATED [PDBeChem] +synonym: "D-glucarate" EXACT IUPAC_NAME [IUPAC] +synonym: "D-glucarate" RELATED [UniProt] +synonym: "DSLZVSRJTYRBFB-LLEIAEIESA-L" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C6H10O8/c7-1(3(9)5(11)12)2(8)4(10)6(13)14/h1-4,7-10H,(H,11,12)(H,13,14)/p-2/t1-,2-,3-,4+/m0/s1" RELATED InChI [ChEBI] +synonym: "O[C@@H]([C@H](O)[C@@H](O)C([O-])=O)[C@H](O)C([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:3909239 "Beilstein" +xref: Gmelin:407929 "Gmelin" +xref: KEGG:C00818 "ChEBI" +xref: PDBeChem:GKR +is_a: CHEBI:30613 ! glucarate(2-) +relationship: is_conjugate_base_of CHEBI:33801 ! D-glucarate(1-) + +[Term] +id: CHEBI:30613 +name: glucarate(2-) +namespace: chebi_ontology +alt_id: CHEBI:14311 +alt_id: CHEBI:24256 +def: "A glucaric acid anion that is the dianion obtained by the deprotonation of both the carboxy groups of glucaric acid." [] +subset: 3_STAR +synonym: "glucarate" EXACT IUPAC_NAME [IUPAC] +synonym: "glucarate" RELATED [UniProt] +is_a: CHEBI:48914 ! glucaric acid anion +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:35392 ! glucarate(1-) + +[Term] +id: CHEBI:30616 +name: ATP(4-) +namespace: chebi_ontology +def: "A nucleoside triphosphate(4-) obtained by global deprotonation of the triphosphate OH groups of ATP; major species present at pH 7.3." [] +subset: 3_STAR +synonym: "-4" RELATED CHARGE [ChEBI] +synonym: "502.964" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "503.14946" RELATED MASS [ChEBI] +synonym: "adenosine 5'-triphosphate(4-)" EXACT IUPAC_NAME [IUPAC] +synonym: "ATP" RELATED [UniProt] +synonym: "atp" RELATED [IUPAC] +synonym: "C10H12N5O13P3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/p-4/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "ZKHQWZAMYRWXGA-KQYNXXCUSA-J" RELATED InChIKey [ChEBI] +xref: Beilstein:3581767 "Beilstein" +xref: Gmelin:342798 "Gmelin" +is_a: CHEBI:61557 ! nucleoside triphosphate(4-) +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:57299 ! ATP(3-) + +[Term] +id: CHEBI:30655 +name: L-homoserine lactone +namespace: chebi_ontology +def: "The L-enantiomer of homoserine lactone." [] +subset: 3_STAR +synonym: "(3R)-3-amino-4,5-dihydrofuran-2(3H)-one" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "101.048" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "101.10390" RELATED MASS [ChEBI] +synonym: "C4H7NO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H7NO2/c5-3-1-2-7-4(3)6/h3H,1-2,5H2/t3-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-homoserine lactone" EXACT IUPAC_NAME [IUPAC] +synonym: "N[C@H]1CCOC1=O" RELATED SMILES [ChEBI] +synonym: "QJPWUUJVYOJNMH-VKHMYHEASA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:80586 "Beilstein" +is_a: CHEBI:17289 ! homoserine lactone +relationship: is_conjugate_base_of CHEBI:58633 ! L-homoserine lactone(1+) +relationship: is_enantiomer_of CHEBI:30657 ! D-homoserine lactone + +[Term] +id: CHEBI:30657 +name: D-homoserine lactone +namespace: chebi_ontology +def: "The D-enantiomer of homoserine lactone." [] +subset: 3_STAR +synonym: "(3S)-3-amino-4,5-dihydrofuran-2(3H)-one" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "101.048" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "101.10390" RELATED MASS [ChEBI] +synonym: "C4H7NO2" RELATED FORMULA [ChEBI] +synonym: "D-homoserine lactone" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C4H7NO2/c5-3-1-2-7-4(3)6/h3H,1-2,5H2/t3-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@@H]1CCOC1=O" RELATED SMILES [ChEBI] +synonym: "QJPWUUJVYOJNMH-GSVOUGTGSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:80585 "Beilstein" +is_a: CHEBI:17289 ! homoserine lactone +relationship: is_enantiomer_of CHEBI:30655 ! L-homoserine lactone + +[Term] +id: CHEBI:30740 +name: ethylene glycol bis(2-aminoethyl)tetraacetic acid +namespace: chebi_ontology +def: "A diether that is ethylene glycol in which the hydrogens of the hydroxy groups have been replaced by 2-[bis(carboxymethyl)amino]ethyl group respectively." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2,2',2'',2'''-[ethane-1,2-diylbis(oxyethane-2,1-diylnitrilo)]tetraacetic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "3,12-bis(carboxymethyl)-6,9-dioxa-3,12-diazatetradecanedioic acid" RELATED [ChemIDplus] +synonym: "380.143" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "380.34784" RELATED MASS [ChEBI] +synonym: "[ethylenebis(oxyethylenenitrilo)]tetraacetic acid" RELATED [ChEBI] +synonym: "C14H24N2O10" RELATED FORMULA [ChEBI] +synonym: "DEFVIWRASFVYLL-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "EGTA" RELATED [ChemIDplus] +synonym: "Egtazic acid" RELATED [ChemIDplus] +synonym: "ethylene glycol bis(beta-aminoethyl ether)-N,N,N',N'-tetraacetic acid" RELATED [ChEBI] +synonym: "ethylene glycol-O,O'-bis(2-aminoethyl)-N,N,N',N'-tetraacetic acid" RELATED [ChEBI] +synonym: "H4egta" RELATED [IUPAC] +synonym: "InChI=1S/C14H24N2O10/c17-11(18)7-15(8-12(19)20)1-3-25-5-6-26-4-2-16(9-13(21)22)10-14(23)24/h1-10H2,(H,17,18)(H,19,20)(H,21,22)(H,23,24)" RELATED InChI [ChEBI] +synonym: "OC(=O)CN(CCOCCOCCN(CC(O)=O)CC(O)=O)CC(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:1717370 "Beilstein" +xref: CAS:67-42-5 "ChemIDplus" +xref: Gmelin:234970 "Gmelin" +xref: PMID:11034152 "Europe PMC" +xref: PMID:18804143 "Europe PMC" +xref: Reaxys:1717370 "Reaxys" +xref: Wikipedia:EGTA_(chemical) +is_a: CHEBI:35742 ! tetracarboxylic acid +is_a: CHEBI:46786 ! diether +is_a: CHEBI:50996 ! tertiary amino compound +relationship: has_role CHEBI:38161 ! chelator + +[Term] +id: CHEBI:30745 +name: phenylacetic acid +namespace: chebi_ontology +alt_id: CHEBI:25977 +alt_id: CHEBI:44686 +alt_id: CHEBI:8085 +def: "A monocarboxylic acid that is toluene in which one of the hydrogens of the methyl group has been replaced by a carboxy group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "136.052" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "136.14792" RELATED MASS [ChEBI] +synonym: "2-PHENYLACETIC ACID" RELATED [PDBeChem] +synonym: "2-Phenylethanoic acid" RELATED [HMDB] +synonym: "alpha-toluic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "Benzeneacetic acid" RELATED [KEGG_COMPOUND] +synonym: "benzeneacetic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "Benzylformic acid" RELATED [KEGG_COMPOUND] +synonym: "C8H8O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C8H8O2/c9-8(10)6-7-4-2-1-3-5-7/h1-5H,6H2,(H,9,10)" RELATED InChI [ChEBI] +synonym: "OC(=O)Cc1ccccc1" RELATED SMILES [ChEBI] +synonym: "Omega-Phenylacetic acid" RELATED [HMDB] +synonym: "omega-phenylacetic acid" RELATED [HMDB] +synonym: "PA" RELATED [ChEBI] +synonym: "Phenylacetic acid" EXACT [KEGG_COMPOUND] +synonym: "phenylacetic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "WLJVXDMOQOGPHL-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1099647 "Beilstein" +xref: CAS:103-82-2 "ChemIDplus" +xref: Drug_Central:4624 "DrugCentral" +xref: ECMDB:ECMDB04128 +xref: Gmelin:68976 "Gmelin" +xref: HMDB:HMDB00209 +xref: KEGG:C07086 +xref: KNApSAcK:C00000750 +xref: MetaCyc:PHENYLACETATE +xref: PDBeChem:PAC +xref: PMID:12147706 "Europe PMC" +xref: PMID:12569987 "Europe PMC" +xref: PMID:15057459 "Europe PMC" +xref: PMID:15506622 "Europe PMC" +xref: PMID:15646820 "Europe PMC" +xref: PMID:17622769 "Europe PMC" +xref: PMID:2083978 "Europe PMC" +xref: PMID:24587751 "Europe PMC" +xref: PMID:24631718 "Europe PMC" +xref: PMID:7544181 "Europe PMC" +xref: PMID:7716788 "Europe PMC" +xref: Reaxys:1099647 "Reaxys" +xref: Wikipedia:Phenylacetic_acid +xref: YMDB:YMDB00891 +is_a: CHEBI:22712 ! benzenes +is_a: CHEBI:25384 ! monocarboxylic acid +relationship: has_functional_parent CHEBI:15366 ! acetic acid +relationship: has_role CHEBI:22676 ! auxin +relationship: has_role CHEBI:27026 ! toxin +relationship: has_role CHEBI:35219 ! plant growth retardant +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76956 ! Aspergillus metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:90318 ! EC 6.4.1.1 (pyruvate carboxylase) inhibitor +relationship: is_conjugate_acid_of CHEBI:18401 ! phenylacetate + +[Term] +id: CHEBI:30746 +name: benzoic acid +namespace: chebi_ontology +alt_id: CHEBI:22722 +alt_id: CHEBI:3029 +alt_id: CHEBI:41051 +def: "A compound comprising a benzene ring core carrying a carboxylic acid substituent." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "122.037" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "122.12130" RELATED MASS [ChEBI] +synonym: "acide benzoique" RELATED [ChEBI] +synonym: "Aromatic carboxylic acid" RELATED [KEGG_COMPOUND] +synonym: "Benzenecarboxylic acid" RELATED [KEGG_COMPOUND] +synonym: "Benzeneformic acid" RELATED [HMDB] +synonym: "Benzenemethanoic acid" RELATED [HMDB] +synonym: "Benzoesaeure" RELATED [ChEBI] +synonym: "BENZOIC ACID" EXACT [PDBeChem] +synonym: "Benzoic acid" EXACT [KEGG_COMPOUND] +synonym: "benzoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "C7H6O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Dracylic acid" RELATED [KEGG_COMPOUND] +synonym: "E210" RELATED [ChEBI] +synonym: "InChI=1S/C7H6O2/c8-7(9)6-4-2-1-3-5-6/h1-5H,(H,8,9)" RELATED InChI [ChEBI] +synonym: "OC(=O)c1ccccc1" RELATED SMILES [ChEBI] +synonym: "Phenylcarboxylic acid" RELATED [HMDB] +synonym: "Phenylformic acid" RELATED [KEGG_COMPOUND] +synonym: "WPYMKLBDIGXBTP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:636131 "Beilstein" +xref: CAS:65-85-0 "ChemIDplus" +xref: Drug_Central:4664 "DrugCentral" +xref: DrugBank:DB03793 +xref: Gmelin:2946 "Gmelin" +xref: HMDB:HMDB01870 +xref: KEGG:C00180 +xref: KEGG:C00539 +xref: KEGG:D00038 +xref: KNApSAcK:C00000207 +xref: LINCS:LSM-37118 +xref: MetaCyc:BENZOATE +xref: PDBeChem:BEZ +xref: PMID:16728954 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:18314336 "Europe PMC" +xref: Reaxys:636131 "Reaxys" +xref: Wikipedia:Benzoic_Acid +xref: YMDB:YMDB02301 +is_a: CHEBI:22723 ! benzoic acids +relationship: has_role CHEBI:64996 ! EC 1.13.11.33 (arachidonate 15-lipoxygenase) inhibitor +relationship: has_role CHEBI:65001 ! EC 3.1.1.3 (triacylglycerol lipase) inhibitor +relationship: has_role CHEBI:65256 ! antimicrobial food preservative +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76967 ! human xenobiotic metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: has_role CHEBI:88188 ! drug allergen +relationship: is_conjugate_acid_of CHEBI:16150 ! benzoate + +[Term] +id: CHEBI:30751 +name: formic acid +namespace: chebi_ontology +alt_id: CHEBI:24082 +alt_id: CHEBI:42460 +alt_id: CHEBI:5145 +def: "The simplest carboxylic acid, containing a single carbon. Occurs naturally in various sources including the venom of bee and ant stings, and is a useful organic synthetic reagent. Principally used as a preservative and antibacterial agent in livestock feed. Induces severe metabolic acidosis and ocular injury in human subjects." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "46.005" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "46.02538" RELATED MASS [ChEBI] +synonym: "[H]C(O)=O" RELATED SMILES [ChEBI] +synonym: "Acide formique" RELATED [ChemIDplus] +synonym: "Ameisensaeure" RELATED [ChemIDplus] +synonym: "aminic acid" RELATED [ChemIDplus] +synonym: "BDAGIHXWWSANSR-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "bilorin" RELATED [ChemIDplus] +synonym: "CH2O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "FORMIC ACID" EXACT [PDBeChem] +synonym: "Formic acid" EXACT [KEGG_COMPOUND] +synonym: "formic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "formylic acid" RELATED [ChemIDplus] +synonym: "H-COOH" RELATED [IUPAC] +synonym: "HCO2H" RELATED [ChEBI] +synonym: "HCOOH" RELATED [NIST_Chemistry_WebBook] +synonym: "hydrogen carboxylic acid" RELATED [ChemIDplus] +synonym: "InChI=1S/CH2O2/c2-1-3/h1H,(H,2,3)" RELATED InChI [ChEBI] +synonym: "Methanoic acid" RELATED [KEGG_COMPOUND] +synonym: "methoic acid" RELATED [ChEBI] +xref: Beilstein:1209246 "Beilstein" +xref: CAS:64-18-6 "NIST Chemistry WebBook" +xref: DrugBank:DB01942 +xref: Gmelin:1008 "Gmelin" +xref: HMDB:HMDB00142 +xref: KEGG:C00058 +xref: KNApSAcK:C00001182 +xref: LIPID_MAPS_instance:LMFA01010040 "LIPID MAPS" +xref: MetaCyc:FORMATE +xref: Patent:CN101481304 +xref: PDBeChem:FMT +xref: PMID:12591956 "Europe PMC" +xref: PMID:14637377 "Europe PMC" +xref: PMID:15811469 "Europe PMC" +xref: PMID:16120414 "Europe PMC" +xref: PMID:16185830 "Europe PMC" +xref: PMID:16222862 "Europe PMC" +xref: PMID:16230297 "Europe PMC" +xref: PMID:16445901 "Europe PMC" +xref: PMID:16465784 "Europe PMC" +xref: PMID:18034701 "Europe PMC" +xref: PMID:18397576 "Europe PMC" +xref: PMID:22080171 "Europe PMC" +xref: PMID:22280475 "Europe PMC" +xref: PMID:22304812 "Europe PMC" +xref: PMID:22385261 "Europe PMC" +xref: PMID:22447125 "Europe PMC" +xref: PMID:22483350 "Europe PMC" +xref: PMID:22499553 "Europe PMC" +xref: PMID:22540994 "Europe PMC" +xref: PMID:22606986 "Europe PMC" +xref: PMID:22622393 "Europe PMC" +xref: PMID:3946945 "Europe PMC" +xref: PMID:7361809 "Europe PMC" +xref: Reaxys:1209246 "Reaxys" +xref: Wikipedia:Formic_acid +is_a: CHEBI:25384 ! monocarboxylic acid +relationship: has_role CHEBI:25212 ! metabolite +relationship: has_role CHEBI:33282 ! antibacterial agent +relationship: has_role CHEBI:48356 ! protic solvent +relationship: has_role CHEBI:74783 ! astringent +relationship: is_conjugate_acid_of CHEBI:15740 ! formate + +[Term] +id: CHEBI:30753 +name: 4-aminobenzoic acid +namespace: chebi_ontology +alt_id: CHEBI:113372 +alt_id: CHEBI:1783 +alt_id: CHEBI:20315 +alt_id: CHEBI:44778 +def: "An aminobenzoic acid in which the amino group is para to the carboxy group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-Amino-4-carboxybenzene" RELATED [HMDB] +synonym: "137.048" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "137.13600" RELATED MASS [ChEBI] +synonym: "4-Amino-benzoic acid" RELATED [ChEMBL] +synonym: "4-Aminobenzoesaeure" RELATED [ChEBI] +synonym: "4-AMINOBENZOIC ACID" EXACT [PDBeChem] +synonym: "4-Aminobenzoic acid" EXACT [KEGG_COMPOUND] +synonym: "4-aminobenzoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "4-Carboxyaniline" RELATED [HMDB] +synonym: "4-Carboxyphenylamine" RELATED [HMDB] +synonym: "ABEE" RELATED [KEGG_COMPOUND] +synonym: "ALYNCZNDIQEVRV-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "C7H7NO2" RELATED FORMULA [ChEBI] +synonym: "gamma-Aminobenzoic acid" RELATED [HMDB] +synonym: "gamma-aminobenzoic acid" RELATED [HMDB] +synonym: "InChI=1S/C7H7NO2/c8-6-3-1-5(2-4-6)7(9)10/h1-4H,8H2,(H,9,10)" RELATED InChI [ChEBI] +synonym: "Nc1ccc(cc1)C(O)=O" RELATED SMILES [ChEBI] +synonym: "p-Aminobenzoesaeure" RELATED [ChEBI] +synonym: "p-aminobenzoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "p-carboxyaniline" RELATED [HMDB] +synonym: "p-carboxyphenylamine" RELATED [HMDB] +synonym: "PABA" RELATED [NIST_Chemistry_WebBook] +synonym: "para-aminobenzoic acid" RELATED [NIST_Chemistry_WebBook] +xref: Beilstein:471605 "Beilstein" +xref: CAS:150-13-0 "KEGG COMPOUND" +xref: Drug_Central:2049 "DrugCentral" +xref: DrugBank:DB02362 +xref: ECMDB:ECMDB01392 +xref: Gmelin:50150 "Gmelin" +xref: HMDB:HMDB01392 +xref: KEGG:C00568 +xref: KEGG:D02456 +xref: KNApSAcK:C00001401 +xref: PDBeChem:PAB +xref: PMID:12039592 "ChEMBL" +xref: PMID:14745019 "Europe PMC" +xref: PMID:15115392 "ChEMBL" +xref: PMID:1527790 "ChEMBL" +xref: PMID:16290145 "ChEMBL" +xref: PMID:17149871 "ChEMBL" +xref: PMID:17743450 "Europe PMC" +xref: PMID:17800214 "Europe PMC" +xref: PMID:19469519 "Europe PMC" +xref: PMID:22767283 "Europe PMC" +xref: PMID:22994574 "Europe PMC" +xref: PMID:23063996 "Europe PMC" +xref: PMID:23084339 "Europe PMC" +xref: PMID:23144588 "Europe PMC" +xref: PMID:23471007 "Europe PMC" +xref: PMID:3599019 "ChEMBL" +xref: PMID:3820215 "ChEMBL" +xref: PMID:3950915 "ChEMBL" +xref: PMID:8411009 "ChEMBL" +xref: PMID:9406595 "ChEMBL" +xref: Reaxys:471605 "Reaxys" +xref: Wikipedia:4-Aminobenzoic_Acid +xref: YMDB:YMDB00493 +is_a: CHEBI:22495 ! aminobenzoic acid +relationship: has_functional_parent CHEBI:30746 ! benzoic acid +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:17836 ! 4-aminobenzoate + +[Term] +id: CHEBI:30754 +name: anthranilic acid +namespace: chebi_ontology +alt_id: CHEBI:22577 +alt_id: CHEBI:22578 +alt_id: CHEBI:2757 +alt_id: CHEBI:40980 +def: "An aminobenzoic acid that is benzoic acid having a single amino substituent located at position 2. It is a metabolite produced in L-tryptophan-kynurenine pathway in the central nervous system." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "137.048" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "137.13600" RELATED MASS [ChEBI] +synonym: "2-Aminobenzoesaeure" RELATED [ChEBI] +synonym: "2-AMINOBENZOIC ACID" RELATED [PDBeChem] +synonym: "2-aminobenzoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "2-carboxyaniline" RELATED [NIST_Chemistry_WebBook] +synonym: "Anthranilic acid" EXACT [KEGG_COMPOUND] +synonym: "C7H7NO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C7H7NO2/c8-6-4-2-1-3-5(6)7(9)10/h1-4H,8H2,(H,9,10)" RELATED InChI [ChEBI] +synonym: "Nc1ccccc1C(O)=O" RELATED SMILES [ChEBI] +synonym: "o-Aminobenzoesaeure" RELATED [ChEBI] +synonym: "o-Aminobenzoic acid" RELATED [KEGG_COMPOUND] +synonym: "o-aminobenzoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "o-carboxyaniline" RELATED [NIST_Chemistry_WebBook] +synonym: "RWZYAGGXGHYGMB-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Vitamin L1" RELATED [KEGG_COMPOUND] +xref: Beilstein:471803 "Beilstein" +xref: CAS:118-92-3 "KEGG COMPOUND" +xref: DrugBank:DB04166 +xref: Gmelin:3397 "Gmelin" +xref: HMDB:HMDB01123 +xref: KEGG:C00108 +xref: KNApSAcK:C00007382 +xref: MetaCyc:ANTHRANILATE +xref: PDBeChem:BE2 +xref: PMID:11680877 "Europe PMC" +xref: PMID:19745702 "Europe PMC" +xref: PMID:20511543 "Europe PMC" +xref: PMID:22321994 "Europe PMC" +xref: PMID:22341575 "Europe PMC" +xref: PMID:22784643 "Europe PMC" +xref: PMID:28166217 "Europe PMC" +xref: PMID:9784247 "Europe PMC" +xref: Reaxys:471803 "Reaxys" +xref: Wikipedia:Anthranilic_acid +is_a: CHEBI:22495 ! aminobenzoic acid +relationship: has_role CHEBI:27314 ! water-soluble vitamin +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:16567 ! anthranilate + +[Term] +id: CHEBI:30762 +name: salicylate +namespace: chebi_ontology +alt_id: CHEBI:15061 +alt_id: CHEBI:26595 +def: "A monohydroxybenzoate that is the conjugate base of salicylic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "137.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "137.11280" RELATED MASS [ChEBI] +synonym: "2-hydroxybenzoate" EXACT IUPAC_NAME [IUPAC] +synonym: "2-hydroxybenzoic acid ion(1-)" RELATED [ChemIDplus] +synonym: "C7H5O3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C7H6O3/c8-6-4-2-1-3-5(6)7(9)10/h1-4,8H,(H,9,10)/p-1" RELATED InChI [ChEBI] +synonym: "o-hydroxybenzoate" RELATED [ChemIDplus] +synonym: "Oc1ccccc1C([O-])=O" RELATED SMILES [ChEBI] +synonym: "sal" RELATED [IUPAC] +synonym: "Salicylate" EXACT [KEGG_COMPOUND] +synonym: "salicylate" EXACT [UniProt] +synonym: "YGSDEFSMJLZEOE-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3605209 "Beilstein" +xref: CAS:63-36-5 "ChemIDplus" +xref: Gmelin:3417 "Gmelin" +xref: KEGG:C00805 +xref: PMID:16669002 "Europe PMC" +xref: PMID:16934829 "Europe PMC" +xref: Reaxys:3605209 "Reaxys" +xref: UM-BBD_compID:c0043 "ChEBI" +is_a: CHEBI:25388 ! monohydroxybenzoate +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: is_conjugate_base_of CHEBI:16914 ! salicylic acid + +[Term] +id: CHEBI:30763 +name: 4-hydroxybenzoic acid +namespace: chebi_ontology +alt_id: CHEBI:1858 +alt_id: CHEBI:20398 +alt_id: CHEBI:44949 +def: "A monohydroxybenzoic acid that is benzoic acid carrying a hydroxy substituent at C-4 of the benzene ring." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "138.032" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "138.12074" RELATED MASS [ChEBI] +synonym: "4-carboxyphenol" RELATED [NIST_Chemistry_WebBook] +synonym: "4-Hydroxybenzoic acid" EXACT [KEGG_COMPOUND] +synonym: "4-hydroxybenzoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "C7H6O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "FJKROLUGYXJWQN-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C7H6O3/c8-6-3-1-5(2-4-6)7(9)10/h1-4,8H,(H,9,10)" RELATED InChI [ChEBI] +synonym: "OC(=O)c1ccc(O)cc1" RELATED SMILES [ChEBI] +synonym: "P-HYDROXYBENZOIC ACID" RELATED [PDBeChem] +synonym: "p-hydroxybenzoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "p-salicylic acid" RELATED [NIST_Chemistry_WebBook] +xref: Beilstein:970950 "Beilstein" +xref: CAS:99-96-7 "KEGG COMPOUND" +xref: DrugBank:DB04242 +xref: ECMDB:ECMDB00500 +xref: Gmelin:3102 "Gmelin" +xref: HMDB:HMDB00500 +xref: KEGG:C00156 +xref: KNApSAcK:C00000856 +xref: PDBeChem:PHB +xref: PMID:17185273 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:24128482 "Europe PMC" +xref: PMID:24236566 "Europe PMC" +xref: Reaxys:970950 "Reaxys" +xref: Wikipedia:4-Hydroxybenzoic_acid +xref: YMDB:YMDB00495 +is_a: CHEBI:25389 ! monohydroxybenzoic acid +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_acid_of CHEBI:17879 ! 4-hydroxybenzoate + +[Term] +id: CHEBI:30768 +name: propionic acid +namespace: chebi_ontology +alt_id: CHEBI:26304 +alt_id: CHEBI:45227 +alt_id: CHEBI:8476 +def: "A short-chain saturated fatty acid comprising ethane attached to the carbon of a carboxy group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "74.037" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "74.07850" RELATED MASS [ChEBI] +synonym: "acide propanoique" RELATED [ChEBI] +synonym: "acide propionique" RELATED [NIST_Chemistry_WebBook] +synonym: "C3H6O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "carboxyethane" RELATED [ChemIDplus] +synonym: "CCC(O)=O" RELATED SMILES [ChEBI] +synonym: "CH3-CH2-COOH" RELATED [IUPAC] +synonym: "ethanecarboxylic acid" RELATED [ChemIDplus] +synonym: "ethylformic acid" RELATED [ChemIDplus] +synonym: "InChI=1S/C3H6O2/c1-2-3(4)5/h2H2,1H3,(H,4,5)" RELATED InChI [ChEBI] +synonym: "metacetonic acid" RELATED [ChemIDplus] +synonym: "methylacetic acid" RELATED [ChemIDplus] +synonym: "PA" RELATED [ChEBI] +synonym: "PROPANOIC ACID" RELATED [PDBeChem] +synonym: "Propanoic acid" RELATED [KEGG_COMPOUND] +synonym: "propanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "propioic acid" RELATED [LIPID_MAPS] +synonym: "Propionic acid" EXACT [KEGG_COMPOUND] +synonym: "propionic acid" EXACT [IUPAC] +synonym: "Propionsaeure" RELATED [ChEBI] +synonym: "propoic acid" RELATED [ChEBI] +synonym: "pseudoacetic acid" RELATED [ChemIDplus] +synonym: "XBDQKXXYIPTUBI-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:506071 "Beilstein" +xref: CAS:79-09-4 "NIST Chemistry WebBook" +xref: DrugBank:DB03766 +xref: Gmelin:1821 "Gmelin" +xref: KEGG:C00163 +xref: KEGG:D02310 +xref: LIPID_MAPS_instance:LMFA01010003 "LIPID MAPS" +xref: PDBeChem:PPI +xref: PMID:15868474 "Europe PMC" +xref: PMID:1628870 "Europe PMC" +xref: PMID:16763906 "Europe PMC" +is_a: CHEBI:26607 ! saturated fatty acid +is_a: CHEBI:26666 ! short-chain fatty acid +relationship: has_role CHEBI:86327 ! antifungal drug +relationship: is_conjugate_acid_of CHEBI:17272 ! propionate + +[Term] +id: CHEBI:30769 +name: citric acid +namespace: chebi_ontology +alt_id: CHEBI:23322 +alt_id: CHEBI:3727 +alt_id: CHEBI:41523 +def: "A tricarboxylic acid that is propane-1,2,3-tricarboxylic acid bearing a hydroxy substituent at position 2. It is an important metabolite in the pathway of all aerobic organisms." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "192.027" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "192.12350" RELATED MASS [ChEBI] +synonym: "2-Hydroxy-1,2,3-propanetricarboxylic acid" RELATED [KEGG_COMPOUND] +synonym: "2-hydroxypropane-1,2,3-tricarboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "2-Hydroxytricarballylic acid" RELATED [KEGG_COMPOUND] +synonym: "3-Carboxy-3-hydroxypentane-1,5-dioic acid" RELATED [HMDB] +synonym: "C6H8O7" RELATED FORMULA [ChEBI] +synonym: "CITRIC ACID" EXACT [PDBeChem] +synonym: "Citric acid" EXACT [KEGG_COMPOUND] +synonym: "citric acid" EXACT [UniProt] +synonym: "Citronensaeure" RELATED [ChEBI] +synonym: "E330" RELATED [ChEBI] +synonym: "H3cit" RELATED [IUPAC] +synonym: "InChI=1S/C6H8O7/c7-3(8)1-6(13,5(11)12)2-4(9)10/h13H,1-2H2,(H,7,8)(H,9,10)(H,11,12)" RELATED InChI [ChEBI] +synonym: "KRKNYBCHXYNGOX-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "OC(=O)CC(O)(CC(O)=O)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:782061 "Beilstein" +xref: CAS:77-92-9 "ChemIDplus" +xref: Drug_Central:666 "DrugCentral" +xref: DrugBank:DB04272 +xref: Gmelin:4240 "Gmelin" +xref: HMDB:HMDB00094 +xref: KEGG:C00158 +xref: KEGG:D00037 +xref: KNApSAcK:C00007619 +xref: MetaCyc:CIT +xref: PDBeChem:CIT +xref: PMID:11762832 "Europe PMC" +xref: PMID:11782123 "Europe PMC" +xref: PMID:11857437 "Europe PMC" +xref: PMID:14537820 "Europe PMC" +xref: PMID:15311880 "Europe PMC" +xref: PMID:15934243 "Europe PMC" +xref: PMID:16232627 "Europe PMC" +xref: PMID:17190852 "Europe PMC" +xref: PMID:17357118 "Europe PMC" +xref: PMID:17604395 "Europe PMC" +xref: PMID:18298573 "Europe PMC" +xref: PMID:18960216 "Europe PMC" +xref: PMID:19288211 "Europe PMC" +xref: PMID:22115968 "Europe PMC" +xref: PMID:22192423 "Europe PMC" +xref: PMID:22264346 "Europe PMC" +xref: PMID:22373571 "Europe PMC" +xref: PMID:22509852 "Europe PMC" +xref: Reaxys:782061 "Reaxys" +xref: Wikipedia:Citric_Acid +is_a: CHEBI:27093 ! tricarboxylic acid +relationship: has_role CHEBI:33281 ! antimicrobial agent +relationship: has_role CHEBI:38161 ! chelator +relationship: has_role CHEBI:64049 ! food acidity regulator +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:35804 ! citrate(1-) + +[Term] +id: CHEBI:30772 +name: butyric acid +namespace: chebi_ontology +alt_id: CHEBI:113450 +alt_id: CHEBI:22948 +alt_id: CHEBI:3234 +alt_id: CHEBI:41208 +def: "A straight-chain saturated fatty acid that is butane in which one of the terminal methyl groups has been oxidised to a carboxy group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-butanoic acid" RELATED [HMDB] +synonym: "1-butyric acid" RELATED [HMDB] +synonym: "1-propanecarboxylic acid" RELATED [MetaCyc] +synonym: "4:0" RELATED [ChEBI] +synonym: "88.052" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "88.10510" RELATED MASS [ChEBI] +synonym: "acide butanoique" RELATED [IUPAC] +synonym: "acide butyrique" RELATED [ChEBI] +synonym: "butanic acid" RELATED [ChEBI] +synonym: "Butanoate" RELATED [KEGG_COMPOUND] +synonym: "BUTANOIC ACID" RELATED [PDBeChem] +synonym: "Butanoic acid" RELATED [KEGG_COMPOUND] +synonym: "butanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "butanoic acid" RELATED [UniProt] +synonym: "butoic acid" RELATED [ChEBI] +synonym: "Buttersaeure" RELATED [ChEBI] +synonym: "Butyric acid" EXACT [KEGG_COMPOUND] +synonym: "butyric acid" EXACT [IUPAC] +synonym: "C4:0" RELATED [ChEBI] +synonym: "C4H8O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CCCC(O)=O" RELATED SMILES [ChEBI] +synonym: "CH3-[CH2]2-COOH" RELATED [IUPAC] +synonym: "ethylacetic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "FERIUCNNQQJTOY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H8O2/c1-2-3-4(5)6/h2-3H2,1H3,(H,5,6)" RELATED InChI [ChEBI] +synonym: "n-butanoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "n-butyric acid" RELATED [NIST_Chemistry_WebBook] +synonym: "propanecarboxylic acid" RELATED [HMDB] +synonym: "propylformic acid" RELATED [MetaCyc] +xref: Beilstein:906770 "Beilstein" +xref: CAS:107-92-6 "KEGG COMPOUND" +xref: DrugBank:DB03568 +xref: Gmelin:26242 "Gmelin" +xref: HMDB:HMDB00039 +xref: KEGG:C00246 +xref: KNApSAcK:C00001180 +xref: LIPID_MAPS_instance:LMFA01010004 "LIPID MAPS" +xref: MetaCyc:BUTYRIC_ACID +xref: PDBeChem:BUA +xref: PMID:10736622 "Europe PMC" +xref: PMID:10956204 "ChEMBL" +xref: PMID:11201044 "Europe PMC" +xref: PMID:11208715 "Europe PMC" +xref: PMID:11238216 "Europe PMC" +xref: PMID:11305323 "Europe PMC" +xref: PMID:12068484 "Europe PMC" +xref: PMID:13678314 "Europe PMC" +xref: PMID:14962641 "Europe PMC" +xref: PMID:1542095 "ChEMBL" +xref: PMID:15809727 "Europe PMC" +xref: PMID:15810631 "Europe PMC" +xref: PMID:15938880 "Europe PMC" +xref: PMID:19318247 "Europe PMC" +xref: PMID:19366864 "Europe PMC" +xref: PMID:19703412 "Europe PMC" +xref: PMID:21699495 "Europe PMC" +xref: PMID:22038864 "Europe PMC" +xref: PMID:22194341 "Europe PMC" +xref: PMID:22322557 "Europe PMC" +xref: PMID:22339023 "Europe PMC" +xref: PMID:22466881 "Europe PMC" +xref: Reaxys:906770 "Reaxys" +xref: Wikipedia:Butyric_acid +is_a: CHEBI:26666 ! short-chain fatty acid +is_a: CHEBI:39418 ! straight-chain saturated fatty acid +relationship: has_role CHEBI:131604 ! Mycoplasma genitalium metabolite +relationship: has_role CHEBI:84087 ! human urinary metabolite +relationship: is_conjugate_acid_of CHEBI:17968 ! butyrate + +[Term] +id: CHEBI:30776 +name: hexanoic acid +namespace: chebi_ontology +alt_id: CHEBI:24571 +alt_id: CHEBI:40213 +alt_id: CHEBI:5702 +def: "A C6, straight-chain saturated fatty acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-hexanoic acid" RELATED [ChemIDplus] +synonym: "1-pentanecarboxylic acid" RELATED [ChemIDplus] +synonym: "116.084" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "116.15830" RELATED MASS [ChEBI] +synonym: "6:0" RELATED [ChEBI] +synonym: "butylacetic acid" RELATED [ChemIDplus] +synonym: "C6:0" RELATED [ChEBI] +synonym: "C6H12O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "caproic acid" RELATED [ChEBI] +synonym: "capronic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "CCCCCC(O)=O" RELATED SMILES [ChEBI] +synonym: "CH3-[CH2]4-COOH" RELATED [IUPAC] +synonym: "FUZZWVXGSFPDMH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Hexanoate" RELATED [KEGG_COMPOUND] +synonym: "HEXANOIC ACID" EXACT [PDBeChem] +synonym: "Hexanoic acid" EXACT [KEGG_COMPOUND] +synonym: "hexanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "hexoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "Hexylic acid" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C6H12O2/c1-2-3-4-5-6(7)8/h2-5H2,1H3,(H,7,8)" RELATED InChI [ChEBI] +synonym: "n-Caproic acid" RELATED [KEGG_COMPOUND] +synonym: "n-hexanoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "n-hexoic acid" RELATED [ChemIDplus] +synonym: "n-hexylic acid" RELATED [ChemIDplus] +synonym: "Pentanecarboxylic acid" RELATED [ChemIDplus] +synonym: "pentiformic acid" RELATED [ChemIDplus] +synonym: "pentylformic acid" RELATED [ChemIDplus] +xref: Beilstein:773837 "Beilstein" +xref: CAS:142-62-1 "ChemIDplus" +xref: ECMDB:ECMDB21229 +xref: Gmelin:185066 "Gmelin" +xref: HMDB:HMDB00535 +xref: KEGG:C01585 +xref: KNApSAcK:C00001218 +xref: LIPID_MAPS_instance:LMFA01010006 "LIPID MAPS" +xref: MetaCyc:HEXANOATE +xref: PDBeChem:6NA +xref: PMID:10685018 "Europe PMC" +xref: PMID:1556177 "Europe PMC" +xref: PMID:24357269 "Europe PMC" +xref: PMID:24924750 "Europe PMC" +xref: Reaxys:773837 "Reaxys" +xref: Wikipedia:Hexanoic_acid +xref: YMDB:YMDB01424 +is_a: CHEBI:39418 ! straight-chain saturated fatty acid +is_a: CHEBI:59554 ! medium-chain fatty acid +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:17120 ! hexanoate + +[Term] +id: CHEBI:30779 +name: succinate(1-) +namespace: chebi_ontology +def: "A dicarboxylic acid monoanion resulting from the removal of a proton from one of the carboxy groups of succinic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "117.019" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "117.08010" RELATED MASS [ChEBI] +synonym: "3-carboxypropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "Butanedioic acid, conjugate base" RELATED [NIST_Chemistry_WebBook] +synonym: "C4H5O4" RELATED FORMULA [ChEBI] +synonym: "HOOC-CH2-CH2-COO(-)" RELATED [ChEBI] +synonym: "hydrogen succinate" RELATED [ChEBI] +synonym: "InChI=1S/C4H6O4/c5-3(6)1-2-4(7)8/h1-2H2,(H,5,6)(H,7,8)/p-1" RELATED InChI [ChEBI] +synonym: "KDYFGRWQOYBRFD-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "OC(=O)CCC([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:3904279 "Beilstein" +xref: Gmelin:325292 "Gmelin" +xref: Reaxys:3904279 "Reaxys" +is_a: CHEBI:26806 ! succinate +is_a: CHEBI:35695 ! dicarboxylic acid monoanion +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:30031 ! succinate(2-) +relationship: is_conjugate_base_of CHEBI:15741 ! succinic acid + +[Term] +id: CHEBI:30780 +name: maleate(2-) +namespace: chebi_ontology +alt_id: CHEBI:14559 +alt_id: CHEBI:25118 +def: "A C4-dicarboxylate that is the Z-isomer of but-2-enedioate(2-)" [] +subset: 3_STAR +synonym: "(2Z)-but-2-enedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "113.995" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "114.05628" RELATED MASS [ChEBI] +synonym: "[O-]C(=O)\\C=C/C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C4H2O4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H4O4/c5-3(6)1-2-4(7)8/h1-2H,(H,5,6)(H,7,8)/p-2/b2-1-" RELATED InChI [ChEBI] +synonym: "male" RELATED [IUPAC] +synonym: "maleate" RELATED [UniProt] +synonym: "VZCYOOQTPOCHFL-UPHRSURJSA-L" RELATED InChIKey [ChEBI] +xref: Beilstein:3588415 "Beilstein" +xref: Gmelin:49853 "Gmelin" +xref: Reaxys:3588415 "Reaxys" +is_a: CHEBI:132951 ! maleate +is_a: CHEBI:36180 ! butenedioate +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: is_conjugate_base_of CHEBI:37156 ! maleate(1-) + +[Term] +id: CHEBI:30796 +name: (R)-malic acid +namespace: chebi_ontology +alt_id: CHEBI:18686 +alt_id: CHEBI:342 +alt_id: CHEBI:42060 +alt_id: CHEBI:44073 +def: "An optically active form of malic acid having (R)-configuration." [] +subset: 3_STAR +synonym: "(+)-D-malic acid" RELATED [ChEBI] +synonym: "(2R)-2-hydroxybutanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "(R)-2-hydroxybutanedioic acid" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "134.022" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "134.08740" RELATED MASS [ChEBI] +synonym: "2-HYDROXY-SUCCINIC ACID" RELATED [PDBeChem] +synonym: "BJEPYKJPYRNKOW-UWTATZPHSA-N" RELATED InChIKey [ChEBI] +synonym: "C4H6O5" RELATED FORMULA [ChEBI] +synonym: "D-Malic acid" RELATED [KEGG_COMPOUND] +synonym: "D-malic acid" RELATED [ChEBI] +synonym: "InChI=1S/C4H6O5/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "O[C@H](CC(O)=O)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:1723540 "Beilstein" +xref: CAS:636-61-3 "KEGG COMPOUND" +xref: HMDB:HMDB00744 +xref: KEGG:C00497 +xref: MetaCyc:CPD-660 +xref: PDBeChem:DMR +xref: PDBeChem:MLT +xref: PMID:13842473 "Europe PMC" +xref: PMID:22735334 "Europe PMC" +xref: PMID:8620111 "Europe PMC" +xref: Reaxys:1723540 "Reaxys" +xref: Wikipedia:Malic_acid +is_a: CHEBI:6650 ! malic acid +relationship: is_conjugate_acid_of CHEBI:15588 ! (R)-malate(2-) +relationship: is_enantiomer_of CHEBI:30797 ! (S)-malic acid + +[Term] +id: CHEBI:30797 +name: (S)-malic acid +namespace: chebi_ontology +alt_id: CHEBI:18785 +alt_id: CHEBI:423 +def: "An optically active form of malic acid having (S)-configuration." [] +subset: 3_STAR +synonym: "(-)-L-malic acid" RELATED [ChEBI] +synonym: "(2S)-2-hydroxybutanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "(S)-(-)-Hydroxysuccinic acid" RELATED [HMDB] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "134.022" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "134.08744" RELATED MASS [ChEBI] +synonym: "BJEPYKJPYRNKOW-REOHCLBHSA-N" RELATED InChIKey [ChEBI] +synonym: "C4H6O5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C4H6O5/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-2-Hydroxybutanedioic acid" RELATED [KEGG_COMPOUND] +synonym: "L-Apple acid" RELATED [KEGG_COMPOUND] +synonym: "L-Malic acid" RELATED [KEGG_COMPOUND] +synonym: "L-malic acid" RELATED [ChEBI] +synonym: "Malate" RELATED [KEGG_COMPOUND] +synonym: "Malic acid" RELATED [KEGG_COMPOUND] +synonym: "O[C@@H](CC(O)=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "S-2-Hydroxybutanedioic acid" RELATED [HMDB] +xref: Beilstein:1723541 "Beilstein" +xref: CAS:97-67-6 "NIST Chemistry WebBook" +xref: HMDB:HMDB00156 +xref: KEGG:C00149 +xref: KNApSAcK:C00001192 +xref: MetaCyc:MAL +xref: PDBeChem:LMR +xref: PMID:22452826 "Europe PMC" +xref: Reaxys:1723541 "Reaxys" +is_a: CHEBI:6650 ! malic acid +relationship: is_conjugate_acid_of CHEBI:15589 ! (S)-malate(2-) +relationship: is_enantiomer_of CHEBI:30796 ! (R)-malic acid + +[Term] +id: CHEBI:30812 +name: iron dichloride +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "125.873" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "126.75040" RELATED MASS [ChEBI] +synonym: "[FeCl2]" RELATED [MolBase] +synonym: "Cl2Fe" RELATED FORMULA [ChEBI] +synonym: "Cl[Fe]Cl" RELATED SMILES [ChEBI] +synonym: "FeCl2" RELATED [IUPAC] +synonym: "ferrous chloride" RELATED [ChemIDplus] +synonym: "InChI=1S/2ClH.Fe/h2*1H;/q;;+2/p-2" RELATED InChI [ChEBI] +synonym: "iron dichloride" EXACT IUPAC_NAME [IUPAC] +synonym: "iron(2+) chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "iron(II) chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "NMCUIPGRVMDVDB-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +xref: CAS:7758-94-3 "NIST Chemistry WebBook" +xref: Drug_Central:4543 "DrugCentral" +xref: Gmelin:1398 "Gmelin" +xref: MolBase:315 +xref: Wikipedia:Iron(II)_chloride +is_a: CHEBI:33892 ! iron coordination entity + +[Term] +id: CHEBI:30813 +name: decanoic acid +namespace: chebi_ontology +alt_id: CHEBI:23572 +alt_id: CHEBI:41906 +alt_id: CHEBI:4347 +def: "A C10, straight-chain saturated fatty acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-nonanecarboxylic acid" RELATED [ChemIDplus] +synonym: "10:0" RELATED [ChEBI] +synonym: "172.146" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "172.265" RELATED MASS [ChEBI] +synonym: "C(CCCCCC)CCC(=O)O" RELATED SMILES [ChEBI] +synonym: "C10:0" RELATED [ChEBI] +synonym: "C10H20O2" RELATED FORMULA [ChEBI] +synonym: "capric acid" RELATED [ChEBI] +synonym: "caprinic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "CH3-[CH2]8-COOH" RELATED [IUPAC] +synonym: "Decanoate" RELATED [KEGG_COMPOUND] +synonym: "DECANOIC ACID" EXACT [PDBeChem] +synonym: "Decanoic acid" EXACT [KEGG_COMPOUND] +synonym: "decanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "decoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "Decylic acid" RELATED [KEGG_COMPOUND] +synonym: "Dekansaeure" RELATED [ChEBI] +synonym: "GHVNFZFCNZKVNT-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C10H20O2/c1-2-3-4-5-6-7-8-9-10(11)12/h2-9H2,1H3,(H,11,12)" RELATED InChI [ChEBI] +synonym: "Kaprinsaeure" RELATED [ChEBI] +synonym: "n-Capric acid" RELATED [KEGG_COMPOUND] +synonym: "n-decanoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "n-decoic acid" RELATED [ChemIDplus] +synonym: "n-decylic acid" RELATED [ChemIDplus] +xref: Beilstein:1754556 "Beilstein" +xref: CAS:334-48-5 "ChemIDplus" +xref: DrugBank:DB03600 +xref: ECMDB:ECMDB21204 +xref: Gmelin:69184 "Gmelin" +xref: HMDB:HMDB00511 +xref: KEGG:C01571 +xref: KNApSAcK:C00001213 +xref: LIPID_MAPS_instance:LMFA01010010 "LIPID MAPS" +xref: MetaCyc:CPD-3617 +xref: PDBeChem:DKA +xref: PMID:19168249 "Europe PMC" +xref: PMID:20661498 "Europe PMC" +xref: PMID:24284257 "Europe PMC" +xref: PMID:24357269 "Europe PMC" +xref: YMDB:YMDB00677 +is_a: CHEBI:39418 ! straight-chain saturated fatty acid +is_a: CHEBI:59554 ! medium-chain fatty acid +relationship: has_parent_hydride CHEBI:41808 ! decane +relationship: has_role CHEBI:27311 ! volatile oil component +relationship: has_role CHEBI:33282 ! antibacterial agent +relationship: has_role CHEBI:67079 ! anti-inflammatory agent +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_acid_of CHEBI:27689 ! decanoate + +[Term] +id: CHEBI:30849 +name: L-arabinose +namespace: chebi_ontology +alt_id: CHEBI:13076 +def: "The L-enantiomer of arabinose." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.12990" RELATED MASS [ChEBI] +synonym: "C5H10O5" RELATED FORMULA [ChEBI] +synonym: "L-Ara" RELATED [JCBN] +synonym: "L-arabino-pentose" EXACT IUPAC_NAME [IUPAC] +synonym: "L-arabinose" EXACT IUPAC_NAME [IUPAC] +xref: CAS:5328-37-0 "ChemIDplus" +xref: PMID:17336832 "Europe PMC" +xref: PMID:23545138 "Europe PMC" +xref: PMID:23949136 "Europe PMC" +xref: PMID:24078190 "Europe PMC" +xref: PMID:24195072 "Europe PMC" +is_a: CHEBI:22599 ! arabinose +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:84735 ! algal metabolite + +[Term] +id: CHEBI:30852 +name: galactaric acid +namespace: chebi_ontology +alt_id: CHEBI:24137 +alt_id: CHEBI:4130 +alt_id: CHEBI:5250 +def: "A hexaric acid resulting from formal oxidative ring cleavage of galactose." [] +subset: 3_STAR +synonym: "(2R,3S,4R,5S)-2,3,4,5-tetrahydroxyhexanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "210.038" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "210.13880" RELATED MASS [ChEBI] +synonym: "acido galactarico" RELATED [ChEBI] +synonym: "acido mucico" RELATED [ChEBI] +synonym: "C6H10O8" RELATED FORMULA [KEGG_COMPOUND] +synonym: "DSLZVSRJTYRBFB-DUHBMQHGSA-N" RELATED InChIKey [ChEBI] +synonym: "Galactaric acid" EXACT [KEGG_COMPOUND] +synonym: "Galactarsaeure" RELATED [ChEBI] +synonym: "Galactosaccharic acid" RELATED [HMDB] +synonym: "Galaktarsaeure" RELATED [ChEBI] +synonym: "InChI=1S/C6H10O8/c7-1(3(9)5(11)12)2(8)4(10)6(13)14/h1-4,7-10H,(H,11,12)(H,13,14)/t1-,2+,3+,4-" RELATED InChI [ChEBI] +synonym: "meso-galactaric acid" EXACT IUPAC_NAME [IUPAC] +synonym: "Mucic acid" RELATED [KEGG_COMPOUND] +synonym: "Mucinsaeure" RELATED [ChEBI] +synonym: "O[C@@H]([C@@H](O)[C@H](O)C(O)=O)[C@@H](O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "Saccharolactic acid" RELATED [HMDB] +synonym: "Schleimsaeure" RELATED [ChemIDplus] +xref: Beilstein:1728117 "ChemIDplus" +xref: CAS:526-99-8 "KEGG COMPOUND" +xref: Gmelin:165629 "Gmelin" +xref: HMDB:HMDB00639 +xref: KEGG:C00879 +xref: MetaCyc:D-GALACTARATE +xref: Patent:WO2010072902 +xref: PMID:11675026 "Europe PMC" +xref: PMID:12459157 "Europe PMC" +xref: PMID:1288842 "Europe PMC" +xref: PMID:16667263 "Europe PMC" +xref: PMID:23052862 "Europe PMC" +xref: Reaxys:1728117 "Reaxys" +xref: Wikipedia:Galactaric_acid +is_a: CHEBI:24577 ! hexaric acid +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:35390 ! galactarate(1-) + +[Term] +id: CHEBI:30854 +name: indole-3-acetate +namespace: chebi_ontology +alt_id: CHEBI:14447 +alt_id: CHEBI:14452 +alt_id: CHEBI:24801 +def: "An indol-3-yl carboxylic acid anion that is the conjugate base of indole-3-acetic acid." [] +subset: 3_STAR +synonym: "(indol-3-yl)acetate" RELATED [UniProt] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "174.056" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "174.17660" RELATED MASS [ChEBI] +synonym: "1H-indol-3-ylacetate" EXACT IUPAC_NAME [IUPAC] +synonym: "2-(indol-3-yl)ethanoate" RELATED [ChEBI] +synonym: "[O-]C(=O)Cc1c[nH]c2ccccc12" RELATED SMILES [ChEBI] +synonym: "C10H8NO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C10H9NO2/c12-10(13)5-7-6-11-9-4-2-1-3-8(7)9/h1-4,6,11H,5H2,(H,12,13)/p-1" RELATED InChI [ChEBI] +synonym: "SEOVTRFCIGRIMH-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3906817 "Beilstein" +xref: Gmelin:329972 "Gmelin" +xref: Reaxys:3906817 "Reaxys" +is_a: CHEBI:38468 ! indol-3-yl carboxylic acid anion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:16411 ! indole-3-acetic acid + +[Term] +id: CHEBI:30879 +name: alcohol +namespace: chebi_ontology +alt_id: CHEBI:13804 +alt_id: CHEBI:22288 +alt_id: CHEBI:2553 +def: "A compound in which a hydroxy group, -OH, is attached to a saturated carbon atom." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "17.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "Alcohol" EXACT [KEGG_COMPOUND] +synonym: "alcohols" EXACT IUPAC_NAME [IUPAC] +synonym: "an alcohol" RELATED [UniProt] +synonym: "HOR" RELATED FORMULA [ChEBI] +synonym: "O[*]" RELATED SMILES [ChEBI] +xref: KEGG:C00069 +is_a: CHEBI:33822 ! organic hydroxy compound + +[Term] +id: CHEBI:30911 +name: glucitol +namespace: chebi_ontology +alt_id: CHEBI:15093 +alt_id: CHEBI:26724 +alt_id: CHEBI:26726 +alt_id: CHEBI:33795 +alt_id: CHEBI:33796 +alt_id: CHEBI:9201 +subset: 3_STAR +synonym: "C6H14O6" RELATED FORMULA [ChEBI] +synonym: "glucitol" EXACT IUPAC_NAME [IUPAC] +synonym: "gulitol" RELATED [ChEBI] +synonym: "rel-(2R,3R,4R,5S)-hexane-1,2,3,4,5,6-hexol" RELATED [IUPAC] +synonym: "Sorbitol" RELATED [KEGG_COMPOUND] +synonym: "sorbitol" RELATED [UniProt] +xref: Beilstein:1721909 "Beilstein" +xref: Gmelin:83165 "Gmelin" +xref: Wikipedia:Sorbitol +is_a: CHEBI:24583 ! hexitol +relationship: has_role CHEBI:76924 ! plant metabolite + +[Term] +id: CHEBI:30924 +name: L-tartrate(2-) +namespace: chebi_ontology +alt_id: CHEBI:10961 +alt_id: CHEBI:11018 +alt_id: CHEBI:18711 +subset: 3_STAR +synonym: "(+)-tartrate" RELATED [ChEBI] +synonym: "(2R,3R)-2,3-dihydroxybutanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "(2R,3R)-2,3-dihydroxysuccinate" RELATED [ChEBI] +synonym: "(2R,3R)-tartrate" RELATED [UniProt] +synonym: "(2R,3R)-tartrate" RELATED [ChEBI] +synonym: "(R,R)-Tartrate" RELATED [KEGG_COMPOUND] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "148.001" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "148.07096" RELATED MASS [ChEBI] +synonym: "C4H4O6" RELATED FORMULA [ChEBI] +synonym: "FEWJPZIEWOKRBE-JCYAYHJZSA-L" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/p-2/t1-,2-/m1/s1" RELATED InChI [ChEBI] +synonym: "L-threarate" RELATED [ChEBI] +synonym: "O[C@H]([C@@H](O)C([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:3906378 "Beilstein" +xref: CAS:87-69-4 "KEGG COMPOUND" +xref: Gmelin:305937 "Gmelin" +xref: KEGG:C00898 +is_a: CHEBI:15193 ! tartrate(2-) +relationship: is_conjugate_base_of CHEBI:35398 ! L-tartrate(1-) +relationship: is_enantiomer_of CHEBI:30927 ! D-tartrate(2-) + +[Term] +id: CHEBI:30927 +name: D-tartrate(2-) +namespace: chebi_ontology +alt_id: CHEBI:11077 +alt_id: CHEBI:18807 +subset: 3_STAR +synonym: "(-)-tartrate" RELATED [ChEBI] +synonym: "(2S,3S)-2,3-dihydroxybutanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "(2S,3S)-2,3-dihydroxysuccinate" RELATED [ChEBI] +synonym: "(2S,3S)-tartrate" RELATED [ChEBI] +synonym: "(S,S)-tartrate" RELATED [UniProt] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "148.001" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "148.07096" RELATED MASS [ChEBI] +synonym: "C4H4O6" RELATED FORMULA [ChEBI] +synonym: "D-threarate" RELATED [ChEBI] +synonym: "FEWJPZIEWOKRBE-LWMBPPNESA-L" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/p-2/t1-,2-/m0/s1" RELATED InChI [ChEBI] +synonym: "O[C@@H]([C@H](O)C([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:5740672 "Beilstein" +xref: Gmelin:326909 "Gmelin" +is_a: CHEBI:15193 ! tartrate(2-) +relationship: is_conjugate_base_of CHEBI:35399 ! D-tartrate(1-) +relationship: is_enantiomer_of CHEBI:30924 ! L-tartrate(2-) + +[Term] +id: CHEBI:30928 +name: meso-tartrate(2-) +namespace: chebi_ontology +alt_id: CHEBI:12824 +alt_id: CHEBI:25207 +subset: 3_STAR +synonym: "(2R,3S)-2,3-dihydroxybutanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "(2R,3S)-2,3-dihydroxysuccinate" RELATED [ChEBI] +synonym: "(2R,3S)-tartrate" RELATED [UniProt] +synonym: "(2R,3S)-tartrate" RELATED [ChEBI] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "148.001" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "148.07096" RELATED MASS [ChEBI] +synonym: "C4H4O6" RELATED FORMULA [ChEBI] +synonym: "erythrarate" RELATED [ChEBI] +synonym: "FEWJPZIEWOKRBE-XIXRPRMCSA-L" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/p-2/t1-,2+" RELATED InChI [ChEBI] +synonym: "O[C@@H]([C@@H](O)C([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:3906377 "Beilstein" +xref: Gmelin:326908 "Gmelin" +is_a: CHEBI:30929 ! 2,3-dihydroxybutanedioate +relationship: is_conjugate_base_of CHEBI:35400 ! meso-tartrate(1-) + +[Term] +id: CHEBI:30929 +name: 2,3-dihydroxybutanedioate +namespace: chebi_ontology +alt_id: CHEBI:26850 +def: "A tartaric acid anion that is the conjugate base of 3-carboxy-2,3-dihydroxypropanoate." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "148.001" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "148.07096" RELATED MASS [ChEBI] +synonym: "2,3-dihydroxybutanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "2,3-dihydroxysuccinate" RELATED [ChEBI] +synonym: "C4H4O6" RELATED FORMULA [ChEBI] +synonym: "FEWJPZIEWOKRBE-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/p-2" RELATED InChI [ChEBI] +synonym: "OC(C(O)C([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "tartrate" RELATED [UniProt] +xref: Beilstein:1876435 "Beilstein" +is_a: CHEBI:132950 ! tartrate +is_a: CHEBI:61336 ! C4-dicarboxylate +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76967 ! human xenobiotic metabolite +relationship: is_conjugate_base_of CHEBI:48929 ! 3-carboxy-2,3-dihydroxypropanoate + +[Term] +id: CHEBI:30938 +name: 6-aminopenicillanate +namespace: chebi_ontology +alt_id: CHEBI:12207 +alt_id: CHEBI:20704 +subset: 3_STAR +synonym: "(2S,5R,6R)-6-amino-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "215.049" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "215.25062" RELATED MASS [ChEBI] +synonym: "[H][C@@]1(N)C(=O)N2[C@]1([H])SC(C)(C)[C@]2([H])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C8H11N2O3S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C8H12N2O3S/c1-8(2)4(7(12)13)10-5(11)3(9)6(10)14-8/h3-4,6H,9H2,1-2H3,(H,12,13)/p-1/t3-,4+,6-/m1/s1" RELATED InChI [ChEBI] +synonym: "NGHVIOIJCVXTGV-ALEPSDHESA-M" RELATED InChIKey [ChEBI] +xref: Gmelin:604420 "Gmelin" +xref: KEGG:C02954 "ChEBI" +is_a: CHEBI:51356 ! penicillinate anion +relationship: is_conjugate_acid_of CHEBI:16705 ! 6-aminopenicillanic acid +relationship: is_conjugate_base_of CHEBI:57869 ! 6-aminopenicillanic acid zwitterion + +[Term] +id: CHEBI:3098 +name: bile acid +namespace: chebi_ontology +def: "Any member of a group of steroid carboxylic acids occuring in bile, where they are present as the sodium salts of their amides with glycine or taurine." [] +subset: 3_STAR +synonym: "Bile acid" EXACT [KEGG_COMPOUND] +synonym: "bile acids" RELATED [ChEBI] +synonym: "Bile salt" RELATED [KEGG_COMPOUND] +synonym: "Gallensaeure" RELATED [ChEBI] +synonym: "Gallensaeuren" RELATED [ChEBI] +xref: KEGG:C01558 +is_a: CHEBI:24663 ! hydroxy-5beta-cholanic acid +is_a: CHEBI:25384 ! monocarboxylic acid +relationship: is_conjugate_acid_of CHEBI:36235 ! bile acid anion + +[Term] +id: CHEBI:30985 +name: 4,4'-bipyridine +namespace: chebi_ontology +def: "A bipyridine in which the two pyridine moieties are linked by a bond between positions C-4 and C-4'." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "156.069" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "156.18400" RELATED MASS [ChEBI] +synonym: "4,4'-bipyridine" EXACT IUPAC_NAME [IUPAC] +synonym: "4,4'-bipyridyl" RELATED [ChemIDplus] +synonym: "4,4'-bpy" RELATED [IUPAC] +synonym: "4,4'-dipyridine" RELATED [NIST_Chemistry_WebBook] +synonym: "4,4'-dipyridyl" RELATED [NIST_Chemistry_WebBook] +synonym: "4,4-Bipyridin" RELATED [ChEBI] +synonym: "4-(4-pyridyl)pyridine" RELATED [ChemIDplus] +synonym: "C10H8N2" RELATED FORMULA [ChEBI] +synonym: "c1cc(ccn1)-c1ccncc1" RELATED SMILES [ChEBI] +synonym: "gamma,gamma'-bipyridyl" RELATED [NIST_Chemistry_WebBook] +synonym: "gamma,gamma'-dipyridyl" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/C10H8N2/c1-5-11-6-2-9(1)10-3-7-12-8-4-10/h1-8H" RELATED InChI [ChEBI] +synonym: "MWVTWFVJZLCBMC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:113176 "Beilstein" +xref: CAS:553-26-4 "NIST Chemistry WebBook" +xref: Gmelin:3759 "Gmelin" +xref: PMID:24022647 "Europe PMC" +xref: PMID:24358992 "Europe PMC" +xref: PMID:24446585 "Europe PMC" +xref: Reaxys:113176 "Reaxys" +xref: Wikipedia:4\,4%27-Bipyridine +is_a: CHEBI:35545 ! bipyridine + +[Term] +id: CHEBI:31011 +name: valerate +namespace: chebi_ontology +alt_id: CHEBI:14751 +alt_id: CHEBI:25890 +def: "A short-chain fatty acid anion that is the conjugate base of valeric acid; present in ester form as component of many steroid-based pharmaceuticals." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "101.060" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "101.12376" RELATED MASS [ChEBI] +synonym: "C5H9O2" RELATED FORMULA [ChEBI] +synonym: "CCCCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "CH3-[CH2]3-COO(-)" RELATED [IUPAC] +synonym: "InChI=1S/C5H10O2/c1-2-3-4-5(6)7/h2-4H2,1H3,(H,6,7)/p-1" RELATED InChI [ChEBI] +synonym: "n-propylacetate" RELATED [ChEBI] +synonym: "NQPDZGIKBAWPEJ-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "pentanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "pentanoate" RELATED [UniProt] +synonym: "pentanoic acid, ion(1-)" RELATED [ChemIDplus] +xref: Beilstein:3903735 "Beilstein" +xref: CAS:10023-74-2 "ChemIDplus" +xref: Gmelin:325619 "Gmelin" +xref: PMID:17314444 "Europe PMC" +xref: PMID:18783570 "Europe PMC" +xref: Reaxys:3903735 "Reaxys" +is_a: CHEBI:58951 ! short-chain fatty acid anion +is_a: CHEBI:58954 ! straight-chain saturated fatty acid anion +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: is_conjugate_base_of CHEBI:17418 ! valeric acid + +[Term] +id: CHEBI:3110 +name: biotinyl-5'-AMP +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "5'-O-[hydroxy({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}oxy)phosphoryl]adenosine" EXACT IUPAC_NAME [IUPAC] +synonym: "573.141" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "573.51786" RELATED MASS [ChEBI] +synonym: "[H][C@]12CS[C@@H](CCCCC(=O)OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n3cnc4c(N)ncnc34)[C@@]1([H])NC(=O)N2" RELATED SMILES [ChEBI] +synonym: "Biotinyl-5'-AMP" EXACT [KEGG_COMPOUND] +synonym: "C20H28N7O9PS" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C20H28N7O9PS/c21-17-14-18(23-7-22-17)27(8-24-14)19-16(30)15(29)10(35-19)5-34-37(32,33)36-12(28)4-2-1-3-11-13-9(6-38-11)25-20(31)26-13/h7-11,13,15-16,19,29-30H,1-6H2,(H,32,33)(H2,21,22,23)(H2,25,26,31)/t9-,10+,11-,13-,15+,16+,19+/m0/s1" RELATED InChI [ChEBI] +synonym: "UTQCSTJVMLODHM-RHCAYAJFSA-N" RELATED InChIKey [ChEBI] +xref: KEGG:C05921 +xref: Reaxys:20733000 "Reaxys" +is_a: CHEBI:37021 ! purine ribonucleoside 5'-monophosphate +relationship: has_functional_parent CHEBI:15956 ! biotin +relationship: has_functional_parent CHEBI:16027 ! AMP +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:62414 ! biotinyl-5'-AMP(1-) + +[Term] +id: CHEBI:31206 +name: ammonium chloride +namespace: chebi_ontology +def: "An inorganic chloride having ammonium as the counterion." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "53.003" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "53.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "53.49120" RELATED MASS [ChEBI] +synonym: "[Cl-].[H][N+]([H])([H])[H]" RELATED SMILES [ChEBI] +synonym: "[NH4]Cl" RELATED [IUPAC] +synonym: "Ammonium chloride" EXACT [KEGG_COMPOUND] +synonym: "ammonium chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "Ammoniumchlorid" RELATED [NIST_Chemistry_WebBook] +synonym: "azanium chloride" RELATED [ChEBI] +synonym: "Cl.H4N" RELATED FORMULA [KEGG_COMPOUND] +synonym: "ClH4N" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/ClH.H3N/h1H;1H3" RELATED InChI [ChEBI] +synonym: "NH4Cl" RELATED [IUPAC] +synonym: "NLXLAEXVIDQMFP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:12125-02-9 "ChemIDplus" +xref: Gmelin:10120 "Gmelin" +xref: KEGG:C12538 +xref: KEGG:D01139 +xref: Wikipedia:Ammonium_Chloride +is_a: CHEBI:36093 ! inorganic chloride +is_a: CHEBI:47704 ! ammonium salt + +[Term] +id: CHEBI:31460 +name: desferrioxamine B mesylate +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "656.341" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "656.341" RELATED MONOISOTOPIC_MASS [KEGG_DRUG] +synonym: "656.79092" RELATED MASS [ChEBI] +synonym: "[H+].CS([O-])(=O)=O.CC(=O)N(O)CCCCCNC(=O)CCC(=O)N(O)CCCCCNC(=O)CCC(=O)N(O)CCCCCN" RELATED SMILES [ChEBI] +synonym: "C25H48N6O8.CH4SO3" RELATED FORMULA [KEGG_DRUG] +synonym: "C26H52N6SO11" RELATED FORMULA [ChEBI] +synonym: "Deferoxamine B mesylate" RELATED [ChemIDplus] +synonym: "Deferoxamine mesylate" RELATED [ChemIDplus] +synonym: "Deferoxamine methanesulfonate" RELATED [ChemIDplus] +synonym: "Desferal" RELATED BRAND_NAME [DrugBank] +synonym: "Desferin" RELATED BRAND_NAME [DrugBank] +synonym: "Desferrioxamine mesylate" RELATED [ChemIDplus] +synonym: "Desferrioxamine methanesulfonate" RELATED [ChemIDplus] +synonym: "IDDIJAWJANBQLJ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C25H48N6O8.CH4O3S/c1-21(32)29(37)18-9-3-6-16-27-22(33)12-14-25(36)31(39)20-10-4-7-17-28-23(34)11-13-24(35)30(38)19-8-2-5-15-26;1-5(2,3)4/h37-39H,2-20,26H2,1H3,(H,27,33)(H,28,34);1H3,(H,2,3,4)" RELATED InChI [ChEBI] +synonym: "N'-{5-[acetyl(hydroxy)amino]pentyl}-N-(5-{4-[(5-aminopentyl)(hydroxy)amino]-4-oxobutanamido}pentyl)-N-hydroxybutanediamide methanesulfonate" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:6047788 "Beilstein" +xref: CAS:138-14-7 "ChemIDplus" +xref: DrugBank:DB00746 +xref: KEGG:D01186 +is_a: CHEBI:38037 ! methanesulfonate salt +relationship: has_part CHEBI:4356 ! desferrioxamine B +relationship: has_role CHEBI:38157 ! iron chelator +relationship: has_role CHEBI:50247 ! antidote + +[Term] +id: CHEBI:32114 +name: salicylamide +namespace: chebi_ontology +def: "The simplest member of the class of salicylamides derived from salicylic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "137.048" RELATED MONOISOTOPIC_MASS [KEGG_DRUG] +synonym: "137.13600" RELATED MASS [ChEBI] +synonym: "2-Carbamoylphenol" RELATED [ChemIDplus] +synonym: "2-Carboxamidophenol" RELATED [ChemIDplus] +synonym: "2-Hydroxybenzamide" RELATED [ChemIDplus] +synonym: "2-hydroxybenzamide" EXACT IUPAC_NAME [IUPAC] +synonym: "C7H7NO2" RELATED FORMULA [KEGG_DRUG] +synonym: "InChI=1S/C7H7NO2/c8-7(10)5-3-1-2-4-6(5)9/h1-4,9H,(H2,8,10)" RELATED InChI [ChEBI] +synonym: "NC(=O)c1ccccc1O" RELATED SMILES [ChEBI] +synonym: "o-Hydroxybenzamide" RELATED [ChemIDplus] +synonym: "OHB" RELATED [NIST_Chemistry_WebBook] +synonym: "salicilamida" RELATED INN [ChemIDplus] +synonym: "salicylamide" RELATED INN [KEGG_DRUG] +synonym: "salicylamidum" RELATED INN [ChemIDplus] +synonym: "Salicylic Acid amide" RELATED [NIST_Chemistry_WebBook] +synonym: "SKZKKFZAGNVIMN-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:742439 "Beilstein" +xref: CAS:65-45-2 "NIST Chemistry WebBook" +xref: Drug_Central:2415 "DrugCentral" +xref: DrugBank:DB08797 +xref: Gmelin:142521 "Gmelin" +xref: KEGG:D01811 +xref: PDBeChem:OHB +xref: PMID:14729655 "Europe PMC" +xref: PMID:1650428 "Europe PMC" +xref: PMID:22530891 "Europe PMC" +xref: Reaxys:742439 "Reaxys" +xref: Wikipedia:Salicylamide +is_a: CHEBI:33853 ! phenols +is_a: CHEBI:53443 ! salicylamides +relationship: has_role CHEBI:35481 ! non-narcotic analgesic +relationship: has_role CHEBI:35842 ! antirheumatic drug + +[Term] +id: CHEBI:32234 +name: titanium dioxide +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "79.86580" RELATED MASS [ChEBI] +synonym: "79.938" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "[TiO2]" RELATED [MolBase] +synonym: "bis(oxido)titanium" EXACT IUPAC_NAME [IUPAC] +synonym: "dioxido de titanio" RELATED [ChEBI] +synonym: "dioxyde de titane" RELATED [ChEBI] +synonym: "E 171" RELATED [ChEBI] +synonym: "GWEVSGVZZGPLCZ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/2O.Ti" RELATED InChI [ChEBI] +synonym: "O2Ti" RELATED FORMULA [KEGG_COMPOUND] +synonym: "O=[Ti]=O" RELATED SMILES [ChEBI] +synonym: "oxido de titanio(IV)" RELATED [ChEBI] +synonym: "TiO2" RELATED [IUPAC] +synonym: "Titandioxid" RELATED [ChemIDplus] +synonym: "titania" RELATED [ChemIDplus] +synonym: "Titanium dioxide" EXACT [KEGG_COMPOUND] +synonym: "titanium dioxide" EXACT IUPAC_NAME [IUPAC] +synonym: "Titanium oxide" RELATED [KEGG_COMPOUND] +synonym: "titanium(IV) oxide" EXACT IUPAC_NAME [IUPAC] +xref: CAS:13463-67-7 "KEGG COMPOUND" +xref: Drug_Central:4237 "DrugCentral" +xref: Gmelin:833511 "Gmelin" +xref: Gmelin:9354 "Gmelin" +xref: KEGG:C13409 +xref: KEGG:D01931 +xref: MolBase:272 +xref: Wikipedia:Titanium_Dioxide +is_a: CHEBI:134438 ! titanium oxides +relationship: has_role CHEBI:77182 ! food colouring + +[Term] +id: CHEBI:32398 +name: D-glyceric acid +namespace: chebi_ontology +alt_id: CHEBI:21030 +alt_id: CHEBI:4187 +alt_id: CHEBI:41990 +def: "The D-enantiomer of glyceric acid." [] +subset: 3_STAR +synonym: "(2R)-2,3-dihydroxypropanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "106.027" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "106.07734" RELATED MASS [ChEBI] +synonym: "alpha,beta-Hydroxypropionic acid" RELATED [HMDB] +synonym: "C3H6O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-Glyceric acid" EXACT [HMDB] +synonym: "D-GroA" RELATED [ChEBI] +synonym: "Glyceric acid" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C3H6O4/c4-1-2(5)3(6)7/h2,4-5H,1H2,(H,6,7)/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "OC[C@@H](O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "R-glyceric acid" RELATED [ChEBI] +synonym: "RBNPOMFGQQGHHO-UWTATZPHSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1721418 "Beilstein" +xref: CAS:473-81-4 "KEGG COMPOUND" +xref: ECMDB:ECMDB04077 +xref: HMDB:HMDB00139 +xref: KEGG:C00258 +xref: KNApSAcK:C00001185 +xref: MetaCyc:GLYCERATE +xref: Patent:JP2009153507 +xref: Patent:JP2009159826 +xref: PDBeChem:DGY +xref: PMID:17439666 "Europe PMC" +xref: PMID:18853153 "Europe PMC" +xref: PMID:19621222 "Europe PMC" +xref: PMID:21852749 "Europe PMC" +xref: PMID:22226201 "Europe PMC" +xref: PMID:22290646 "Europe PMC" +xref: Reaxys:1721418 "Reaxys" +xref: YMDB:YMDB02299 +is_a: CHEBI:33508 ! glyceric acid +relationship: is_conjugate_acid_of CHEBI:16659 ! D-glycerate +relationship: is_enantiomer_of CHEBI:74324 ! L-glyceric acid + +[Term] +id: CHEBI:32431 +name: L-alaninate +namespace: chebi_ontology +def: "The L-enantiomer of alaninate." [] +subset: 3_STAR +synonym: "(2S)-2-aminopropanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "88.040" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "88.08528" RELATED MASS [ChEBI] +synonym: "C3H6NO2" RELATED FORMULA [ChEBI] +synonym: "C[C@H](N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/p-1/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-alaninate" EXACT IUPAC_NAME [IUPAC] +synonym: "L-alanine anion" RELATED [JCBN] +synonym: "QNAYBMKLOCPYGJ-REOHCLBHSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:4126899 "Beilstein" +xref: Gmelin:324350 "Gmelin" +is_a: CHEBI:32439 ! alaninate +is_a: CHEBI:59814 ! L-alpha-amino acid anion +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:16977 ! L-alanine +relationship: is_enantiomer_of CHEBI:32435 ! D-alaninate + +[Term] +id: CHEBI:32432 +name: L-alaninium +namespace: chebi_ontology +def: "The L-enantiomer of alaninium." [] +subset: 3_STAR +synonym: "(1S)-1-carboxyethanaminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "90.056" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "90.10116" RELATED MASS [ChEBI] +synonym: "C3H8NO2" RELATED FORMULA [ChEBI] +synonym: "C[C@H]([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/p+1/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-alanine cation" RELATED [JCBN] +synonym: "L-alaninium" EXACT IUPAC_NAME [IUPAC] +synonym: "QNAYBMKLOCPYGJ-REOHCLBHSA-O" RELATED InChIKey [ChEBI] +xref: Gmelin:362664 "Gmelin" +is_a: CHEBI:32440 ! alaninium +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:16977 ! L-alanine +relationship: is_enantiomer_of CHEBI:32436 ! D-alaninium + +[Term] +id: CHEBI:32435 +name: D-alaninate +namespace: chebi_ontology +def: "The D-enantiomer of alaninate." [] +subset: 3_STAR +synonym: "(2R)-2-aminopropanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "88.040" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "88.08528" RELATED MASS [ChEBI] +synonym: "C3H6NO2" RELATED FORMULA [ChEBI] +synonym: "C[C@@H](N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "D-alaninate" EXACT IUPAC_NAME [IUPAC] +synonym: "D-alanine anion" RELATED [JCBN] +synonym: "InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/p-1/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "QNAYBMKLOCPYGJ-UWTATZPHSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:4781244 "Beilstein" +xref: Gmelin:745914 "Gmelin" +is_a: CHEBI:32439 ! alaninate +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:15570 ! D-alanine +relationship: is_enantiomer_of CHEBI:32431 ! L-alaninate + +[Term] +id: CHEBI:32436 +name: D-alaninium +namespace: chebi_ontology +def: "An alaninium that is the conjugate acid of D-alanine." [] +subset: 3_STAR +synonym: "(1R)-1-carboxyethanaminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "90.056" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "90.10116" RELATED MASS [ChEBI] +synonym: "C3H8NO2" RELATED FORMULA [ChEBI] +synonym: "C[C@@H]([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "D-alanine cation" RELATED [JCBN] +synonym: "D-alaninium" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/p+1/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "QNAYBMKLOCPYGJ-UWTATZPHSA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:32440 ! alaninium +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:15570 ! D-alanine +relationship: is_enantiomer_of CHEBI:32432 ! L-alaninium + +[Term] +id: CHEBI:32439 +name: alaninate +namespace: chebi_ontology +def: "An alpha-amino-acid anion that is the conjugate base of alanine, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "2-aminopropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "88.040" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "88.08528" RELATED MASS [ChEBI] +synonym: "alaninate" EXACT [JCBN] +synonym: "alanine anion" RELATED [JCBN] +synonym: "C3H6NO2" RELATED FORMULA [ChEBI] +synonym: "CC(N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/p-1" RELATED InChI [ChEBI] +synonym: "QNAYBMKLOCPYGJ-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3903719 "Beilstein" +xref: Gmelin:101040 "Gmelin" +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: has_role CHEBI:25212 ! metabolite +relationship: is_conjugate_base_of CHEBI:16449 ! alanine + +[Term] +id: CHEBI:32440 +name: alaninium +namespace: chebi_ontology +def: "An alpha-amino-acid cation that is the conjugate acid of alanine." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "1-carboxyethanaminium" EXACT IUPAC_NAME [IUPAC] +synonym: "90.056" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "90.10116" RELATED MASS [ChEBI] +synonym: "alanine cation" RELATED [JCBN] +synonym: "alaninium" EXACT [JCBN] +synonym: "C3H8NO2" RELATED FORMULA [ChEBI] +synonym: "CC([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/p+1" RELATED InChI [ChEBI] +synonym: "QNAYBMKLOCPYGJ-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +xref: Gmelin:362663 "Gmelin" +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: has_role CHEBI:25212 ! metabolite +relationship: is_conjugate_acid_of CHEBI:16449 ! alanine + +[Term] +id: CHEBI:32442 +name: L-cysteinate(1-) +namespace: chebi_ontology +def: "The L-enantiomer of cysteinate(1-)." [] +subset: 3_STAR +synonym: "(2R)-2-amino-3-mercaptopropanoate" RELATED [ChEBI] +synonym: "(2R)-2-amino-3-sulfanylpropanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "120.012" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "120.15128" RELATED MASS [ChEBI] +synonym: "C3H6NO2S" RELATED FORMULA [ChEBI] +synonym: "hydrogen L-cysteinate" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p-1/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-cysteinate(1-)" EXACT [JCBN] +synonym: "L-cysteine anion" RELATED [NIST_Chemistry_WebBook] +synonym: "L-cysteine monoanion" RELATED [JCBN] +synonym: "N[C@@H](CS)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "XUJNEKJLAYXESH-REOHCLBHSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:4128886 "Beilstein" +xref: Gmelin:325857 "Gmelin" +xref: Reaxys:4128886 "Reaxys" +is_a: CHEBI:32456 ! cysteinate(1-) +is_a: CHEBI:59814 ! L-alpha-amino acid anion +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:32443 ! L-cysteinate(2-) +relationship: is_conjugate_base_of CHEBI:17561 ! L-cysteine +relationship: is_conjugate_base_of CHEBI:35235 ! L-cysteine zwitterion +relationship: is_enantiomer_of CHEBI:32449 ! D-cysteinate(1-) + +[Term] +id: CHEBI:32443 +name: L-cysteinate(2-) +namespace: chebi_ontology +def: "The L-enantiomer of cysteinate(2-)." [] +subset: 3_STAR +synonym: "(2R)-2-amino-3-sulfidopropanoate" RELATED [IUPAC] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "119.004" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "119.14334" RELATED MASS [ChEBI] +synonym: "C3H5NO2S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p-2/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-cysteinate" EXACT IUPAC_NAME [IUPAC] +synonym: "L-cysteinate(2-)" EXACT [JCBN] +synonym: "L-cysteine dianion" RELATED [JCBN] +synonym: "N[C@@H](C[S-])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "XUJNEKJLAYXESH-REOHCLBHSA-L" RELATED InChIKey [ChEBI] +xref: Beilstein:5921923 "Beilstein" +xref: Gmelin:325856 "Gmelin" +xref: Reaxys:5921923 "Reaxys" +is_a: CHEBI:32457 ! cysteinate(2-) +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:32442 ! L-cysteinate(1-) +relationship: is_enantiomer_of CHEBI:32450 ! D-cysteinate(2-) + +[Term] +id: CHEBI:32445 +name: L-cysteinium +namespace: chebi_ontology +def: "The L-enantiomer of cysteinium." [] +subset: 3_STAR +synonym: "(1R)-1-carboxy-2-mercaptoethanaminium" RELATED [ChEBI] +synonym: "(1R)-1-carboxy-2-sulfanylethanaminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "122.028" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "122.16716" RELATED MASS [ChEBI] +synonym: "[NH3+][C@@H](CS)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C3H8NO2S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p+1/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-cysteine cation" RELATED [JCBN] +synonym: "L-cysteinium" EXACT IUPAC_NAME [IUPAC] +synonym: "L-cysteinium(1+)" RELATED [ChEBI] +synonym: "XUJNEKJLAYXESH-REOHCLBHSA-O" RELATED InChIKey [ChEBI] +xref: Gmelin:325860 "Gmelin" +is_a: CHEBI:32458 ! cysteinium +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:17561 ! L-cysteine +relationship: is_conjugate_acid_of CHEBI:35235 ! L-cysteine zwitterion +relationship: is_enantiomer_of CHEBI:32451 ! D-cysteinium + +[Term] +id: CHEBI:32449 +name: D-cysteinate(1-) +namespace: chebi_ontology +def: "The D-enantiomer of cysteinate(1-)." [] +subset: 3_STAR +synonym: "(2S)-2-amino-3-mercaptopropanoate" RELATED [ChEBI] +synonym: "(2S)-2-amino-3-sulfanylpropanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "120.012" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "120.15128" RELATED MASS [ChEBI] +synonym: "C3H6NO2S" RELATED FORMULA [ChEBI] +synonym: "D-cysteinate(1-)" EXACT [JCBN] +synonym: "D-cysteine monoanion" RELATED [JCBN] +synonym: "hydrogen D-cysteinate" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p-1/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H](CS)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "XUJNEKJLAYXESH-UWTATZPHSA-M" RELATED InChIKey [ChEBI] +xref: Gmelin:1006156 "Gmelin" +is_a: CHEBI:32456 ! cysteinate(1-) +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:32450 ! D-cysteinate(2-) +relationship: is_conjugate_base_of CHEBI:16375 ! D-cysteine +relationship: is_conjugate_base_of CHEBI:35236 ! D-cysteine zwitterion +relationship: is_enantiomer_of CHEBI:32442 ! L-cysteinate(1-) + +[Term] +id: CHEBI:32450 +name: D-cysteinate(2-) +namespace: chebi_ontology +def: "The D-enantiomer of cysteinate(2-)." [] +subset: 3_STAR +synonym: "(2S)-2-amino-3-sulfidopropanoate" RELATED [IUPAC] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "119.004" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "119.14334" RELATED MASS [ChEBI] +synonym: "C3H5NO2S" RELATED FORMULA [ChEBI] +synonym: "D-cysteinate" EXACT IUPAC_NAME [IUPAC] +synonym: "D-cysteinate(2-)" EXACT [JCBN] +synonym: "D-cysteine dianion" RELATED [JCBN] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p-2/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H](C[S-])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "XUJNEKJLAYXESH-UWTATZPHSA-L" RELATED InChIKey [ChEBI] +xref: Gmelin:1342792 "Gmelin" +is_a: CHEBI:32457 ! cysteinate(2-) +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:32449 ! D-cysteinate(1-) +relationship: is_enantiomer_of CHEBI:32443 ! L-cysteinate(2-) + +[Term] +id: CHEBI:32451 +name: D-cysteinium +namespace: chebi_ontology +def: "The D-enantiomer of cysteinium." [] +subset: 3_STAR +synonym: "(1S)-1-carboxy-2-mercaptoethanaminium" RELATED [ChEBI] +synonym: "(1S)-1-carboxy-2-sulfanylethanaminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "122.028" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "122.16716" RELATED MASS [ChEBI] +synonym: "[NH3+][C@H](CS)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C3H8NO2S" RELATED FORMULA [ChEBI] +synonym: "D-cysteine cation" RELATED [JCBN] +synonym: "D-cysteinium" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p+1/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "XUJNEKJLAYXESH-UWTATZPHSA-O" RELATED InChIKey [ChEBI] +xref: Gmelin:363237 "Gmelin" +is_a: CHEBI:32458 ! cysteinium +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:16375 ! D-cysteine +relationship: is_conjugate_acid_of CHEBI:35236 ! D-cysteine zwitterion +relationship: is_enantiomer_of CHEBI:32445 ! L-cysteinium + +[Term] +id: CHEBI:32456 +name: cysteinate(1-) +namespace: chebi_ontology +def: "A sulfur-containing amino-acid anion that is the conjugate base of cysteine, obtained by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "120.012" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "120.15128" RELATED MASS [ChEBI] +synonym: "2-amino-3-mercaptopropanoate" RELATED [ChEBI] +synonym: "2-amino-3-sulfanylpropanoate" RELATED [IUPAC] +synonym: "C3H6NO2S" RELATED FORMULA [ChEBI] +synonym: "cys(-)" RELATED [IUPAC] +synonym: "cysteinate(1-)" EXACT [JCBN] +synonym: "cysteine monoanion" RELATED [JCBN] +synonym: "hydrogen cysteinate" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p-1" RELATED InChI [ChEBI] +synonym: "NC(CS)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "XUJNEKJLAYXESH-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:4128885 "Beilstein" +xref: Gmelin:363235 "Gmelin" +xref: Reaxys:4128885 "Reaxys" +is_a: CHEBI:33558 ! alpha-amino-acid anion +is_a: CHEBI:63470 ! sulfur-containing amino-acid anion +relationship: is_conjugate_acid_of CHEBI:32457 ! cysteinate(2-) +relationship: is_conjugate_base_of CHEBI:15356 ! cysteine +relationship: is_conjugate_base_of CHEBI:35237 ! cysteine zwitterion + +[Term] +id: CHEBI:32457 +name: cysteinate(2-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "119.004" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "119.14334" RELATED MASS [ChEBI] +synonym: "2-amino-3-sulfidopropanoate" RELATED [IUPAC] +synonym: "C3H5NO2S" RELATED FORMULA [ChEBI] +synonym: "cysteinate" EXACT IUPAC_NAME [IUPAC] +synonym: "cysteinate(2-)" EXACT [JCBN] +synonym: "cysteine dianion" RELATED [JCBN] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p-2" RELATED InChI [ChEBI] +synonym: "NC(C[S-])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "XUJNEKJLAYXESH-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +xref: Gmelin:49990 "Gmelin" +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_base_of CHEBI:32456 ! cysteinate(1-) + +[Term] +id: CHEBI:32458 +name: cysteinium +namespace: chebi_ontology +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "1-carboxy-2-mercaptoethanaminium" RELATED [ChEBI] +synonym: "1-carboxy-2-sulfanylethanaminium" EXACT IUPAC_NAME [IUPAC] +synonym: "122.028" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "122.16716" RELATED MASS [ChEBI] +synonym: "[NH3+]C(CS)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C3H8NO2S" RELATED FORMULA [ChEBI] +synonym: "cysteine cation" RELATED [JCBN] +synonym: "cysteinium" EXACT [JCBN] +synonym: "H2cys(+)" RELATED [IUPAC] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/p+1" RELATED InChI [ChEBI] +synonym: "XUJNEKJLAYXESH-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +xref: Gmelin:325859 "Gmelin" +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:15356 ! cysteine +relationship: is_conjugate_acid_of CHEBI:35237 ! cysteine zwitterion + +[Term] +id: CHEBI:32504 +name: phenylalaninate +namespace: chebi_ontology +def: "An aromatic amino-acid anion that is the conjugate base of phenylalanine, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "164.071" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "164.18120" RELATED MASS [ChEBI] +synonym: "2-amino-3-phenylpropanoate" RELATED [IUPAC] +synonym: "C9H10NO2" RELATED FORMULA [ChEBI] +synonym: "COLNVLDHVKWLRT-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12)/p-1" RELATED InChI [ChEBI] +synonym: "NC(Cc1ccccc1)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "phenylalaninate" EXACT IUPAC_NAME [IUPAC] +synonym: "phenylalanine anion" RELATED [JCBN] +xref: Gmelin:329083 "Gmelin" +is_a: CHEBI:33558 ! alpha-amino-acid anion +is_a: CHEBI:63473 ! aromatic amino-acid anion +relationship: is_conjugate_base_of CHEBI:28044 ! phenylalanine + +[Term] +id: CHEBI:32505 +name: phenylalaninium +namespace: chebi_ontology +def: "An alpha-amino-acid cation that is the conjugate acid of phenylalanine, arising from protonation of the amino group." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "1-carboxy-2-phenylethanaminium" RELATED [IUPAC] +synonym: "166.087" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "166.19710" RELATED MASS [ChEBI] +synonym: "[NH3+]C(Cc1ccccc1)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C9H12NO2" RELATED FORMULA [ChEBI] +synonym: "COLNVLDHVKWLRT-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12)/p+1" RELATED InChI [ChEBI] +synonym: "phenylalanine cation" RELATED [JCBN] +synonym: "phenylalaninium" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:28044 ! phenylalanine + +[Term] +id: CHEBI:32507 +name: glycinium +namespace: chebi_ontology +def: "An alpha-amino-acid cation that is the conjugate acid of glycine, arising from protonation of the amino." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "76.040" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "76.07458" RELATED MASS [ChEBI] +synonym: "[NH3+]CC(O)=O" RELATED SMILES [ChEBI] +synonym: "C2H6NO2" RELATED FORMULA [ChEBI] +synonym: "carboxymethanaminium" RELATED [IUPAC] +synonym: "DHMQDGOQFOQNFH-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "glycine cation" RELATED [JCBN] +synonym: "glycinium" EXACT IUPAC_NAME [IUPAC] +synonym: "H2gly(+)" RELATED [IUPAC] +synonym: "InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)/p+1" RELATED InChI [ChEBI] +synonym: "NH3(+)-CH2-COOH" RELATED [IUPAC] +xref: Gmelin:323509 "Gmelin" +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:15428 ! glycine + +[Term] +id: CHEBI:32508 +name: glycinate +namespace: chebi_ontology +def: "An alpha-amino-acid anion that is the conjugate base of glycine, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "74.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "74.05870" RELATED MASS [ChEBI] +synonym: "aminoacetate" RELATED [IUPAC] +synonym: "C2H4NO2" RELATED FORMULA [ChEBI] +synonym: "DHMQDGOQFOQNFH-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "gly(-)" RELATED [IUPAC] +synonym: "glycinate" EXACT IUPAC_NAME [IUPAC] +synonym: "glycine anion" RELATED [JCBN] +synonym: "H2N-CH2-COO(-)" RELATED [IUPAC] +synonym: "InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)/p-1" RELATED InChI [ChEBI] +synonym: "NCC([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:1852023 "Beilstein" +xref: Gmelin:81890 "Gmelin" +xref: Reaxys:1852023 "Reaxys" +xref: UM-BBD_compID:c0559 "UM-BBD" +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:15428 ! glycine + +[Term] +id: CHEBI:32563 +name: lysinate +namespace: chebi_ontology +def: "An alpha-amino-acid anion that is the conjugate base of lysine, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "145.098" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "145.17970" RELATED MASS [ChEBI] +synonym: "2,6-diaminohexanoate" RELATED [IUPAC] +synonym: "C6H13N2O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/p-1" RELATED InChI [ChEBI] +synonym: "KDXKERNSBIXSRK-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "lys(-)" RELATED [IUPAC] +synonym: "lysinate" EXACT IUPAC_NAME [IUPAC] +synonym: "lysine anion" RELATED [JCBN] +synonym: "NCCCCC(N)C([O-])=O" RELATED SMILES [ChEBI] +xref: Gmelin:815095 "Gmelin" +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_base_of CHEBI:25094 ! lysine + +[Term] +id: CHEBI:32564 +name: lysinium(1+) +namespace: chebi_ontology +def: "An alpha-amino-acid cation that is the conjugate acid of lysine, having two cationic amino groups and an anionic carboxy group." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "147.113" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "147.19558" RELATED MASS [ChEBI] +synonym: "2,6-diammoniohexanoate" RELATED [IUPAC] +synonym: "[NH3+]CCCCC([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C6H15N2O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/p+1" RELATED InChI [ChEBI] +synonym: "KDXKERNSBIXSRK-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "lysine monocation" RELATED [JCBN] +synonym: "lysinium" EXACT IUPAC_NAME [IUPAC] +synonym: "lysinium(1+)" EXACT [JCBN] +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:25094 ! lysine +relationship: is_conjugate_base_of CHEBI:32565 ! lysinium(2+) + +[Term] +id: CHEBI:32565 +name: lysinium(2+) +namespace: chebi_ontology +def: "An alpha-amino-acid cation obtained by protonation of both amino groups of lysine." [] +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "1-carboxypentane-1,5-diaminium" RELATED [IUPAC] +synonym: "148.121" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "148.20352" RELATED MASS [ChEBI] +synonym: "[NH3+]CCCCC([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "C6H16N2O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/p+2" RELATED InChI [ChEBI] +synonym: "KDXKERNSBIXSRK-UHFFFAOYSA-P" RELATED InChIKey [ChEBI] +synonym: "lysine dication" RELATED [JCBN] +synonym: "lysinediium" EXACT IUPAC_NAME [IUPAC] +synonym: "lysinium(2+)" EXACT [JCBN] +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:32564 ! lysinium(1+) + +[Term] +id: CHEBI:3259 +name: CCCP +namespace: chebi_ontology +subset: 3_STAR +synonym: "(3-chlorophenyl)hydrazonomalononitrile" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "204.020" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "204.61566" RELATED MASS [ChEBI] +synonym: "[(3-chlorophenyl)hydrazono]malononitrile" RELATED [ChemIDplus] +synonym: "[(3-chlorophenyl)hydrazono]propanedinitrile" RELATED [ChemIDplus] +synonym: "C9H5ClN4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Carbonyl cyanide m-chlorophenyl hydrazone" RELATED [KEGG_COMPOUND] +synonym: "carbonylcyanide-3-chlorophenylhydrazone" RELATED [ChemIDplus] +synonym: "CCCP" EXACT [KEGG_COMPOUND] +synonym: "Clc1cccc(NN=C(C#N)C#N)c1" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C9H5ClN4/c10-7-2-1-3-8(4-7)13-14-9(5-11)6-12/h1-4,13H" RELATED InChI [ChEBI] +synonym: "N'-(3-chlorophenyl)carbonohydrazonoyl dicyanide" EXACT IUPAC_NAME [IUPAC] +synonym: "UGTJLJZQQFGTJD-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1842102 "ChemIDplus" +xref: CAS:555-60-2 "KEGG COMPOUND" +xref: KEGG:C11164 +xref: LINCS:LSM-2341 +is_a: CHEBI:18379 ! nitrile +is_a: CHEBI:38532 ! hydrazone +is_a: CHEBI:83403 ! monochlorobenzenes +relationship: has_functional_parent CHEBI:33189 ! hydrazonomalononitrile + +[Term] +id: CHEBI:32599 +name: magnesium sulfate +namespace: chebi_ontology +def: "A magnesium salt having sulfate as the counterion." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "119.937" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "120.36860" RELATED MASS [ChEBI] +synonym: "[Mg++].[O-]S([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "CSNNHWWHGAXBCP-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/Mg.H2O4S/c;1-5(2,3)4/h;(H2,1,2,3,4)/q+2;/p-2" RELATED InChI [ChEBI] +synonym: "magnesium sulfate" EXACT IUPAC_NAME [IUPAC] +synonym: "Magnesium sulfate (1:1)" RELATED [ChemIDplus] +synonym: "magnesium sulfate anhydrous" RELATED [ChemIDplus] +synonym: "magnesium sulphate" RELATED [NIST_Chemistry_WebBook] +synonym: "magnesium(II) sulfate" RELATED [NIST_Chemistry_WebBook] +synonym: "Magnesiumsulfat" RELATED [ChEBI] +synonym: "MgO4S" RELATED FORMULA [ChEBI] +synonym: "MgSO4" RELATED [IUPAC] +xref: CAS:7487-88-9 "NIST Chemistry WebBook" +xref: colombos:MgSO4 +xref: DrugBank:DB00653 +xref: PMID:8991630 "Europe PMC" +xref: Reaxys:4208125 "Reaxys" +is_a: CHEBI:33975 ! magnesium salt +is_a: CHEBI:51336 ! metal sulfate +relationship: has_role CHEBI:35480 ! analgesic +relationship: has_role CHEBI:35623 ! anticonvulsant +relationship: has_role CHEBI:38070 ! anti-arrhythmia drug +relationship: has_role CHEBI:38215 ! calcium channel blocker +relationship: has_role CHEBI:38867 ! anaesthetic +relationship: has_role CHEBI:66993 ! tocolytic agent + +[Term] +id: CHEBI:32600 +name: tetracene +namespace: chebi_ontology +def: "An acene that consists of four ortho-fused benzene rings in a rectilinear arrangement." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2,3-benzanthracene" RELATED [NIST_Chemistry_WebBook] +synonym: "228.094" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "228.28788" RELATED MASS [ChEBI] +synonym: "benz[b]anthracene" RELATED [NIST_Chemistry_WebBook] +synonym: "C18H12" RELATED FORMULA [ChEBI] +synonym: "c1ccc2cc3cc4ccccc4cc3cc2c1" RELATED SMILES [ChEBI] +synonym: "IFLREYGFSNHWGE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C18H12/c1-2-6-14-10-18-12-16-8-4-3-7-15(16)11-17(18)9-13(14)5-1/h1-12H" RELATED InChI [ChEBI] +synonym: "naphthacene" RELATED [IUPAC] +synonym: "tetracene" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:1909299 "Beilstein" +xref: CAS:92-24-0 "NIST Chemistry WebBook" +xref: Gmelin:306993 "Gmelin" +xref: PMID:11493061 "Europe PMC" +xref: PMID:24655187 "Europe PMC" +xref: Reaxys:1909299 "Reaxys" +xref: Wikipedia:Tetracene +is_a: CHEBI:35297 ! acene +is_a: CHEBI:51270 ! tetracenes + +[Term] +id: CHEBI:32612 +name: isoleucinate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ile(-)" RELATED [IUPAC] +synonym: "isoleucinate" EXACT IUPAC_NAME [IUPAC] +synonym: "isoleucine anion" RELATED [JCBN] +synonym: "rel-(2R,3R)-2-amino-3-methylpentanoate" RELATED [IUPAC] +xref: Gmelin:101585 "Gmelin" +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_base_of CHEBI:24898 ! isoleucine + +[Term] +id: CHEBI:32613 +name: isoleucinium +namespace: chebi_ontology +subset: 3_STAR +synonym: "H2ile(+)" RELATED [IUPAC] +synonym: "isoleucine cation" RELATED [JCBN] +synonym: "isoleucinium" EXACT IUPAC_NAME [IUPAC] +synonym: "rel-(1R,2R)-1-carboxy-2-methylbutan-1-aminium" RELATED [IUPAC] +xref: Gmelin:1651827 "Gmelin" +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:24898 ! isoleucine + +[Term] +id: CHEBI:326268 +name: 1,4-butanediammonium +namespace: chebi_ontology +def: "An alkane-alpha,omega-diammonium(2+) that is the dication of putrescine (1,4-butanediamine) arising from protonation of both primary amino groups; major species at pH 7.3." [] +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "90.116" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "90.16740" RELATED MASS [ChEBI] +synonym: "[NH3+]CCCC[NH3+]" RELATED SMILES [ChEBI] +synonym: "butane-1,4-bis(aminium)" EXACT IUPAC_NAME [IUPAC] +synonym: "butane-1,4-diaminium" RELATED [IUPAC] +synonym: "C4H14N2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H12N2/c5-3-1-2-4-6/h1-6H2/p+2" RELATED InChI [ChEBI] +synonym: "KIDHWZJUCRJVML-UHFFFAOYSA-P" RELATED InChIKey [ChEBI] +synonym: "putrescine" RELATED [UniProt] +synonym: "putrescinium dication" RELATED [ChEBI] +synonym: "putrescinium(2+)" RELATED [ChEBI] +xref: Gmelin:323413 "Gmelin" +xref: MetaCyc:PUTRESCINE +is_a: CHEBI:70977 ! alkane-alpha,omega-diammonium(2+) +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:17148 ! putrescine + +[Term] +id: CHEBI:32627 +name: leucinate +namespace: chebi_ontology +def: "An alpha-amino-acid anion that is the conjugate base of leucine, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "130.087" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "130.16502" RELATED MASS [ChEBI] +synonym: "2-amino-4-methylpentanoate" RELATED [IUPAC] +synonym: "C6H12NO2" RELATED FORMULA [ChEBI] +synonym: "CC(C)CC(N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C6H13NO2/c1-4(2)3-5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9)/p-1" RELATED InChI [ChEBI] +synonym: "leu(-)" RELATED [IUPAC] +synonym: "leucinate" EXACT IUPAC_NAME [IUPAC] +synonym: "leucine anion" RELATED [JCBN] +synonym: "ROHFNLRQFUQHCH-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Reaxys:5245805 "Reaxys" +is_a: CHEBI:33558 ! alpha-amino-acid anion +is_a: CHEBI:63471 ! branched-chain amino-acid anion +relationship: is_conjugate_base_of CHEBI:25017 ! leucine + +[Term] +id: CHEBI:32628 +name: leucinium +namespace: chebi_ontology +def: "An alpha-amino-acid cation that is the conjugate acid of leucine, arising from protonation of the amino group." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "1-carboxy-3-methylbutan-1-aminium" RELATED [IUPAC] +synonym: "132.102" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "132.18090" RELATED MASS [ChEBI] +synonym: "C6H14NO2" RELATED FORMULA [ChEBI] +synonym: "CC(C)CC([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "H2leu(+)" RELATED [IUPAC] +synonym: "InChI=1S/C6H13NO2/c1-4(2)3-5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9)/p+1" RELATED InChI [ChEBI] +synonym: "leucine cation" RELATED [JCBN] +synonym: "leucinium" EXACT IUPAC_NAME [IUPAC] +synonym: "ROHFNLRQFUQHCH-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +xref: Gmelin:1651836 "Gmelin" +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:25017 ! leucine + +[Term] +id: CHEBI:32631 +name: L-methioninate +namespace: chebi_ontology +def: "The L-enantiomer of methioninate." [] +subset: 3_STAR +synonym: "(2S)-2-amino-4-(methylsulfanyl)butanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "148.043" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "148.20444" RELATED MASS [ChEBI] +synonym: "C5H10NO2S" RELATED FORMULA [ChEBI] +synonym: "CSCC[C@H](N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "FFEARJCKVFRZRR-BYPYZUCNSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/p-1/t4-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-methioninate" EXACT IUPAC_NAME [IUPAC] +synonym: "L-methionine anion" RELATED [JCBN] +xref: Beilstein:4740675 "Beilstein" +xref: Gmelin:326566 "Gmelin" +xref: Reaxys:4740675 "Reaxys" +is_a: CHEBI:32644 ! methioninate +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_base_of CHEBI:16643 ! L-methionine +relationship: is_enantiomer_of CHEBI:32637 ! D-methioninate + +[Term] +id: CHEBI:32632 +name: L-methioninium +namespace: chebi_ontology +def: "The L-enantiomer of methioninium." [] +subset: 3_STAR +synonym: "(1S)-1-carboxy-3-(methylsulfanyl)propan-1-aminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "150.059" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "150.22032" RELATED MASS [ChEBI] +synonym: "C5H12NO2S" RELATED FORMULA [ChEBI] +synonym: "CSCC[C@H]([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "FFEARJCKVFRZRR-BYPYZUCNSA-O" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/p+1/t4-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-methionine cation" RELATED [JCBN] +synonym: "L-methioninium" EXACT IUPAC_NAME [IUPAC] +xref: Gmelin:1568767 "Gmelin" +is_a: CHEBI:32646 ! methioninium +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:16643 ! L-methionine +relationship: is_enantiomer_of CHEBI:32638 ! D-methioninium + +[Term] +id: CHEBI:32637 +name: D-methioninate +namespace: chebi_ontology +def: "The D-enantiomer of methioninate." [] +subset: 3_STAR +synonym: "(2R)-2-amino-4-(methylsulfanyl)butanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "148.043" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "148.20444" RELATED MASS [ChEBI] +synonym: "C5H10NO2S" RELATED FORMULA [ChEBI] +synonym: "CSCC[C@@H](N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "D-methioninate" EXACT IUPAC_NAME [IUPAC] +synonym: "D-methionine anion" RELATED [JCBN] +synonym: "FFEARJCKVFRZRR-SCSAIBSYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/p-1/t4-/m1/s1" RELATED InChI [ChEBI] +xref: Gmelin:720123 "Gmelin" +is_a: CHEBI:32644 ! methioninate +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_base_of CHEBI:16867 ! D-methionine +relationship: is_enantiomer_of CHEBI:32631 ! L-methioninate + +[Term] +id: CHEBI:32638 +name: D-methioninium +namespace: chebi_ontology +def: "The D-enantiomer of methioninium." [] +subset: 3_STAR +synonym: "(1R)-1-carboxy-3-(methylsulfanyl)propan-1-aminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "150.059" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "150.22032" RELATED MASS [ChEBI] +synonym: "C5H12NO2S" RELATED FORMULA [ChEBI] +synonym: "CSCC[C@@H]([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "D-methionine cation" RELATED [JCBN] +synonym: "D-methioninium" EXACT IUPAC_NAME [IUPAC] +synonym: "FFEARJCKVFRZRR-SCSAIBSYSA-O" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/p+1/t4-/m1/s1" RELATED InChI [ChEBI] +is_a: CHEBI:32646 ! methioninium +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:16867 ! D-methionine +relationship: is_enantiomer_of CHEBI:32632 ! L-methioninium + +[Term] +id: CHEBI:32644 +name: methioninate +namespace: chebi_ontology +def: "A sulfur-containing amino-acid anion that is the conjugate base of methionine, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "148.043" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "148.20444" RELATED MASS [ChEBI] +synonym: "2-amino-4-(methylsulfanyl)butanoate" RELATED [IUPAC] +synonym: "C5H10NO2S" RELATED FORMULA [ChEBI] +synonym: "CSCCC(N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "FFEARJCKVFRZRR-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/p-1" RELATED InChI [ChEBI] +synonym: "met(-)" RELATED [IUPAC] +synonym: "methioninate" EXACT IUPAC_NAME [IUPAC] +synonym: "methionine anion" RELATED [JCBN] +xref: Beilstein:3937270 "Beilstein" +xref: Gmelin:326565 "Gmelin" +xref: Reaxys:3937270 "Reaxys" +is_a: CHEBI:33558 ! alpha-amino-acid anion +is_a: CHEBI:63470 ! sulfur-containing amino-acid anion +relationship: is_conjugate_base_of CHEBI:16811 ! methionine + +[Term] +id: CHEBI:32646 +name: methioninium +namespace: chebi_ontology +def: "A sulfur-containing amino-acid anion that is the conjugate acid of methionine, arising from protonation of the amino group." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "1-carboxy-3-(methylsulfanyl)propan-1-aminium" RELATED [IUPAC] +synonym: "150.059" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "150.22032" RELATED MASS [ChEBI] +synonym: "C5H12NO2S" RELATED FORMULA [ChEBI] +synonym: "CSCCC([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "FFEARJCKVFRZRR-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "H2met(+)" RELATED [IUPAC] +synonym: "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/p+1" RELATED InChI [ChEBI] +synonym: "methionine cation" RELATED [JCBN] +synonym: "methioninium" EXACT IUPAC_NAME [IUPAC] +xref: Gmelin:326567 "Gmelin" +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:16811 ! methionine + +[Term] +id: CHEBI:32650 +name: L-asparaginate +namespace: chebi_ontology +def: "An optically active form of asparaginate having L-configuration." [] +subset: 3_STAR +synonym: "(2S)-2,4-diamino-4-oxobutanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "131.046" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "131.11006" RELATED MASS [ChEBI] +synonym: "C4H7N2O3" RELATED FORMULA [ChEBI] +synonym: "DCXYFEDJOCDNAF-REOHCLBHSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/p-1/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-asparaginate" EXACT IUPAC_NAME [IUPAC] +synonym: "L-asparagine anion" RELATED [JCBN] +synonym: "N[C@@H](CC(N)=O)C([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:6115348 "Beilstein" +xref: Gmelin:327371 "Gmelin" +xref: HMDB:HMDB00168 +xref: Reaxys:6115348 "Reaxys" +is_a: CHEBI:32660 ! asparaginate +is_a: CHEBI:59814 ! L-alpha-amino acid anion +relationship: is_conjugate_base_of CHEBI:17196 ! L-asparagine +relationship: is_enantiomer_of CHEBI:32656 ! D-asparaginate + +[Term] +id: CHEBI:32651 +name: L-asparaginium +namespace: chebi_ontology +subset: 3_STAR +synonym: "(1S)-3-amino-1-carboxy-3-oxopropan-1-aminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "133.061" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "133.12594" RELATED MASS [ChEBI] +synonym: "C4H9N2O3" RELATED FORMULA [ChEBI] +synonym: "DCXYFEDJOCDNAF-REOHCLBHSA-O" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/p+1/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-asparagine cation" RELATED [JCBN] +synonym: "L-asparaginium" EXACT IUPAC_NAME [IUPAC] +synonym: "NC(=O)C[C@H]([NH3+])C(O)=O" RELATED SMILES [ChEBI] +is_a: CHEBI:32661 ! asparaginium +relationship: is_conjugate_acid_of CHEBI:17196 ! L-asparagine +relationship: is_enantiomer_of CHEBI:32657 ! D-asparaginium + +[Term] +id: CHEBI:32656 +name: D-asparaginate +namespace: chebi_ontology +subset: 3_STAR +synonym: "(2R)-2,4-diamino-4-oxobutanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "131.046" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "131.11006" RELATED MASS [ChEBI] +synonym: "C4H7N2O3" RELATED FORMULA [ChEBI] +synonym: "D-asparaginate" EXACT IUPAC_NAME [IUPAC] +synonym: "D-asparagine anion" RELATED [JCBN] +synonym: "DCXYFEDJOCDNAF-UWTATZPHSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/p-1/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H](CC(N)=O)C([O-])=O" RELATED SMILES [ChEBI] +xref: Gmelin:533547 "Gmelin" +is_a: CHEBI:32660 ! asparaginate +relationship: is_conjugate_base_of CHEBI:28159 ! D-asparagine +relationship: is_enantiomer_of CHEBI:32650 ! L-asparaginate + +[Term] +id: CHEBI:32657 +name: D-asparaginium +namespace: chebi_ontology +subset: 3_STAR +synonym: "(1R)-3-amino-1-carboxy-3-oxopropan-1-aminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "133.061" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "133.12594" RELATED MASS [ChEBI] +synonym: "C4H9N2O3" RELATED FORMULA [ChEBI] +synonym: "D-asparagine cation" RELATED [JCBN] +synonym: "D-asparaginium" EXACT IUPAC_NAME [IUPAC] +synonym: "DCXYFEDJOCDNAF-UWTATZPHSA-O" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/p+1/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "NC(=O)C[C@@H]([NH3+])C(O)=O" RELATED SMILES [ChEBI] +is_a: CHEBI:32661 ! asparaginium +relationship: is_conjugate_acid_of CHEBI:28159 ! D-asparagine +relationship: is_enantiomer_of CHEBI:32651 ! L-asparaginium + +[Term] +id: CHEBI:32660 +name: asparaginate +namespace: chebi_ontology +def: "An alpha-amino-acid anion that is the conjugate base of asparagine, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "131.046" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "131.11006" RELATED MASS [ChEBI] +synonym: "2,4-diamino-4-oxobutanoate" RELATED [IUPAC] +synonym: "asp(-)" RELATED [IUPAC] +synonym: "asparaginate" EXACT IUPAC_NAME [IUPAC] +synonym: "asparagine anion" RELATED [JCBN] +synonym: "C4H7N2O3" RELATED FORMULA [ChEBI] +synonym: "DCXYFEDJOCDNAF-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/p-1" RELATED InChI [ChEBI] +synonym: "NC(CC(N)=O)C([O-])=O" RELATED SMILES [ChEBI] +xref: Gmelin:327370 "Gmelin" +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_base_of CHEBI:22653 ! asparagine + +[Term] +id: CHEBI:32661 +name: asparaginium +namespace: chebi_ontology +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "133.061" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "133.12594" RELATED MASS [ChEBI] +synonym: "3-amino-1-carboxy-3-oxopropan-1-aminium" RELATED [IUPAC] +synonym: "asparagine cation" RELATED [JCBN] +synonym: "asparaginium" EXACT IUPAC_NAME [IUPAC] +synonym: "C4H9N2O3" RELATED FORMULA [ChEBI] +synonym: "DCXYFEDJOCDNAF-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "H2asp(+)" RELATED [IUPAC] +synonym: "InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/p+1" RELATED InChI [ChEBI] +synonym: "NC(=O)CC([NH3+])C(O)=O" RELATED SMILES [ChEBI] +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:22653 ! asparagine + +[Term] +id: CHEBI:32665 +name: L-glutaminate +namespace: chebi_ontology +def: "An optically active form of glutaminate having L-configuration." [] +subset: 3_STAR +synonym: "(2S)-2,5-diamino-5-oxopentanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "145.061" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "145.13664" RELATED MASS [ChEBI] +synonym: "C5H9N2O3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/p-1/t3-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-glutaminate" EXACT IUPAC_NAME [IUPAC] +synonym: "L-glutamine anion" RELATED [JCBN] +synonym: "N[C@@H](CCC(N)=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "ZDXPYRJPNDTMRX-VKHMYHEASA-M" RELATED InChIKey [ChEBI] +xref: Gmelin:327924 "Gmelin" +is_a: CHEBI:32678 ! glutaminate +is_a: CHEBI:59814 ! L-alpha-amino acid anion +relationship: is_conjugate_base_of CHEBI:18050 ! L-glutamine +relationship: is_enantiomer_of CHEBI:32672 ! D-glutaminate + +[Term] +id: CHEBI:32666 +name: L-glutaminium +namespace: chebi_ontology +def: "An optically active form of glutaminium having L-configuration." [] +subset: 3_STAR +synonym: "(1S)-4-amino-1-carboxy-4-oxobutan-1-aminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "147.077" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "147.15252" RELATED MASS [ChEBI] +synonym: "C5H11N2O3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/p+1/t3-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-glutamine cation" RELATED [JCBN] +synonym: "L-glutaminium" EXACT IUPAC_NAME [IUPAC] +synonym: "NC(=O)CC[C@H]([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "ZDXPYRJPNDTMRX-VKHMYHEASA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:32679 ! glutaminium +relationship: is_conjugate_acid_of CHEBI:18050 ! L-glutamine +relationship: is_enantiomer_of CHEBI:32673 ! D-glutaminium + +[Term] +id: CHEBI:32672 +name: D-glutaminate +namespace: chebi_ontology +def: "An optically active form of glutaminate having D-configuration." [] +subset: 3_STAR +synonym: "(2R)-2,5-diamino-5-oxopentanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "145.061" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "145.13664" RELATED MASS [ChEBI] +synonym: "C5H9N2O3" RELATED FORMULA [ChEBI] +synonym: "D-glutaminate" EXACT IUPAC_NAME [IUPAC] +synonym: "D-glutamine anion" RELATED [JCBN] +synonym: "InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/p-1/t3-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H](CCC(N)=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "ZDXPYRJPNDTMRX-GSVOUGTGSA-M" RELATED InChIKey [ChEBI] +xref: Gmelin:1342585 "Gmelin" +is_a: CHEBI:32678 ! glutaminate +relationship: is_conjugate_base_of CHEBI:17061 ! D-glutamine +relationship: is_enantiomer_of CHEBI:32665 ! L-glutaminate + +[Term] +id: CHEBI:32673 +name: D-glutaminium +namespace: chebi_ontology +def: "An optically active form of glutaminium having D-configuration." [] +subset: 3_STAR +synonym: "(1R)-4-amino-1-carboxy-4-oxobutan-1-aminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "147.077" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "147.15252" RELATED MASS [ChEBI] +synonym: "C5H11N2O3" RELATED FORMULA [ChEBI] +synonym: "D-glutamine cation" RELATED [JCBN] +synonym: "D-glutaminium" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/p+1/t3-/m1/s1" RELATED InChI [ChEBI] +synonym: "NC(=O)CC[C@@H]([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "ZDXPYRJPNDTMRX-GSVOUGTGSA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:32679 ! glutaminium +relationship: is_conjugate_acid_of CHEBI:17061 ! D-glutamine +relationship: is_enantiomer_of CHEBI:32666 ! L-glutaminium + +[Term] +id: CHEBI:32678 +name: glutaminate +namespace: chebi_ontology +def: "An alpha-amino-acid anion that is the conjugate base of glutamine, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "145.061" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "145.13664" RELATED MASS [ChEBI] +synonym: "2,5-diamino-5-oxopentanoate" RELATED [IUPAC] +synonym: "C5H9N2O3" RELATED FORMULA [ChEBI] +synonym: "gln(-)" RELATED [IUPAC] +synonym: "glutaminate" EXACT IUPAC_NAME [IUPAC] +synonym: "glutamine anion" RELATED [JCBN] +synonym: "InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/p-1" RELATED InChI [ChEBI] +synonym: "NC(CCC(N)=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "ZDXPYRJPNDTMRX-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Gmelin:464703 "Gmelin" +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_base_of CHEBI:28300 ! glutamine + +[Term] +id: CHEBI:32679 +name: glutaminium +namespace: chebi_ontology +def: "An alpha-amino-acid cation that is the conjugate acid of glutamine, arising from protonation of the amino group." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "147.077" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "147.15252" RELATED MASS [ChEBI] +synonym: "4-amino-1-carboxy-4-oxobutan-1-aminium" RELATED [IUPAC] +synonym: "C5H11N2O3" RELATED FORMULA [ChEBI] +synonym: "glutamine cation" RELATED [JCBN] +synonym: "glutaminium" EXACT IUPAC_NAME [IUPAC] +synonym: "H2gln(+)" RELATED [IUPAC] +synonym: "InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/p+1" RELATED InChI [ChEBI] +synonym: "NC(=O)CCC([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "ZDXPYRJPNDTMRX-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:28300 ! glutamine + +[Term] +id: CHEBI:32681 +name: L-argininate +namespace: chebi_ontology +def: "An L-alpha-amino acid anion that is the conjugate base of L-arginine; obtained by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "(2S)-2-amino-5-(carbamimidamido)pentanoate" RELATED [IUPAC] +synonym: "(2S)-2-amino-5-guanidinopentanoate" RELATED [JCBN] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "173.104" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "173.19318" RELATED MASS [ChEBI] +synonym: "C6H13N4O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p-1/t4-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-argininate" EXACT IUPAC_NAME [IUPAC] +synonym: "L-arginine anion" RELATED [JCBN] +synonym: "N[C@@H](CCCNC(N)=N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "ODKSFYDXXFIFQN-BYPYZUCNSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:4745004 "Beilstein" +xref: Gmelin:329320 "Gmelin" +is_a: CHEBI:32695 ! argininate +is_a: CHEBI:59814 ! L-alpha-amino acid anion +relationship: is_conjugate_base_of CHEBI:16467 ! L-arginine +relationship: is_enantiomer_of CHEBI:32688 ! D-argininate + +[Term] +id: CHEBI:32682 +name: L-argininium(1+) +namespace: chebi_ontology +alt_id: CHEBI:133495 +def: "The L-enantiomer of argininium(1+)." [] +subset: 3_STAR +synonym: "(2S)-2-amino-5-(carbamimidamido)pentanoate" RELATED [ChEBI] +synonym: "(2S)-2-amino-5-guanidinopentanoate" RELATED [JCBN] +synonym: "(2S)-2-ammonio-5-guanidiniopentanoate" RELATED [JCBN] +synonym: "(2S)-2-azaniumyl-5-{[azaniumyl(imino)methyl]amino}pentanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "175.120" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "175.20906" RELATED MASS [ChEBI] +synonym: "arginine(1+)" RELATED [ChEBI] +synonym: "C6H15N4O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-arginine" RELATED [ChEBI] +synonym: "L-arginine" RELATED [UniProt] +synonym: "L-arginine cation" RELATED [ChEBI] +synonym: "L-arginine monocation" RELATED [JCBN] +synonym: "L-argininium" EXACT IUPAC_NAME [IUPAC] +synonym: "L-argininium(1+)" EXACT [JCBN] +synonym: "NC(=[NH2+])NCCC[C@H]([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "ODKSFYDXXFIFQN-BYPYZUCNSA-O" RELATED InChIKey [ChEBI] +xref: Gmelin:1345601 "Gmelin" +is_a: CHEBI:32696 ! argininium(1+) +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:16467 ! L-arginine +relationship: is_conjugate_base_of CHEBI:32683 ! L-argininium(2+) +relationship: is_enantiomer_of CHEBI:32689 ! D-argininium(1+) + +[Term] +id: CHEBI:32683 +name: L-argininium(2+) +namespace: chebi_ontology +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "176.127" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "176.21700" RELATED MASS [ChEBI] +synonym: "[(1S)-1-carboxy-4-guanidiniobutyl]ammonium" RELATED [ChEBI] +synonym: "C6H16N4O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+2/t4-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-arginine dication" RELATED [JCBN] +synonym: "L-argininediium" EXACT IUPAC_NAME [IUPAC] +synonym: "L-argininium(2+)" EXACT [JCBN] +synonym: "NC(=[NH2+])NCCC[C@H]([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "ODKSFYDXXFIFQN-BYPYZUCNSA-P" RELATED InChIKey [ChEBI] +xref: Beilstein:4745613 "Beilstein" +is_a: CHEBI:32697 ! argininium(2+) +relationship: is_conjugate_acid_of CHEBI:32682 ! L-argininium(1+) +relationship: is_enantiomer_of CHEBI:32690 ! D-argininium(2+) + +[Term] +id: CHEBI:32688 +name: D-argininate +namespace: chebi_ontology +subset: 3_STAR +synonym: "(2R)-2-amino-5-(carbamimidamido)pentanoate" RELATED [IUPAC] +synonym: "(2R)-2-amino-5-guanidinopentanoate" RELATED [JCBN] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "173.104" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "173.19318" RELATED MASS [ChEBI] +synonym: "C6H13N4O2" RELATED FORMULA [ChEBI] +synonym: "D-argininate" EXACT IUPAC_NAME [IUPAC] +synonym: "D-arginine anion" RELATED [JCBN] +synonym: "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p-1/t4-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H](CCCNC(N)=N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "ODKSFYDXXFIFQN-SCSAIBSYSA-M" RELATED InChIKey [ChEBI] +is_a: CHEBI:32695 ! argininate +relationship: is_conjugate_base_of CHEBI:15816 ! D-arginine +relationship: is_enantiomer_of CHEBI:32681 ! L-argininate + +[Term] +id: CHEBI:32689 +name: D-argininium(1+) +namespace: chebi_ontology +def: "The D-enantiomer of argininium(1+)." [] +subset: 3_STAR +synonym: "(2R)-2-ammonio-5-guanidiniopentanoate" RELATED [JCBN] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "175.120" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "175.20906" RELATED MASS [ChEBI] +synonym: "C6H15N4O2" RELATED FORMULA [ChEBI] +synonym: "D-arginine" RELATED [UniProt] +synonym: "D-arginine monocation" RELATED [JCBN] +synonym: "D-argininium" EXACT IUPAC_NAME [IUPAC] +synonym: "D-argininium(1+)" EXACT [JCBN] +synonym: "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m1/s1" RELATED InChI [ChEBI] +synonym: "NC(=[NH2+])NCCC[C@@H]([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "ODKSFYDXXFIFQN-SCSAIBSYSA-O" RELATED InChIKey [ChEBI] +xref: Gmelin:1345600 "Gmelin" +xref: MetaCyc:CPD-220 +is_a: CHEBI:32696 ! argininium(1+) +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:15816 ! D-arginine +relationship: is_conjugate_base_of CHEBI:32690 ! D-argininium(2+) +relationship: is_enantiomer_of CHEBI:32682 ! L-argininium(1+) + +[Term] +id: CHEBI:32690 +name: D-argininium(2+) +namespace: chebi_ontology +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "176.127" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "176.21700" RELATED MASS [ChEBI] +synonym: "[(1R)-1-carboxy-4-guanidiniobutyl]ammonium" RELATED [ChEBI] +synonym: "C6H16N4O2" RELATED FORMULA [ChEBI] +synonym: "D-arginine dication" RELATED [JCBN] +synonym: "D-argininediium" EXACT IUPAC_NAME [IUPAC] +synonym: "D-argininium(2+)" EXACT [JCBN] +synonym: "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+2/t4-/m1/s1" RELATED InChI [ChEBI] +synonym: "NC(=[NH2+])NCCC[C@@H]([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "ODKSFYDXXFIFQN-SCSAIBSYSA-P" RELATED InChIKey [ChEBI] +is_a: CHEBI:32697 ! argininium(2+) +relationship: is_conjugate_acid_of CHEBI:32689 ! D-argininium(1+) +relationship: is_enantiomer_of CHEBI:32683 ! L-argininium(2+) + +[Term] +id: CHEBI:32695 +name: argininate +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "173.104" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "173.19318" RELATED MASS [ChEBI] +synonym: "2-amino-5-(carbamimidamido)pentanoate" RELATED [IUPAC] +synonym: "2-amino-5-guanidinopentanoate" RELATED [JCBN] +synonym: "arg(-)" RELATED [IUPAC] +synonym: "argininate" EXACT IUPAC_NAME [IUPAC] +synonym: "arginine anion" RELATED [JCBN] +synonym: "C6H13N4O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p-1" RELATED InChI [ChEBI] +synonym: "NC(CCCNC(N)=N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "ODKSFYDXXFIFQN-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Gmelin:603497 "Gmelin" +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_base_of CHEBI:29016 ! arginine + +[Term] +id: CHEBI:32696 +name: argininium(1+) +namespace: chebi_ontology +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "175.120" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "175.20906" RELATED MASS [ChEBI] +synonym: "2-ammonio-5-guanidiniopentanoate" RELATED [JCBN] +synonym: "arginine" RELATED [UniProt] +synonym: "arginine monocation" RELATED [JCBN] +synonym: "argininium" EXACT IUPAC_NAME [IUPAC] +synonym: "argininium(1+)" EXACT [JCBN] +synonym: "C6H15N4O2" RELATED FORMULA [ChEBI] +synonym: "H2arg(+)" RELATED [IUPAC] +synonym: "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1" RELATED InChI [ChEBI] +synonym: "NC(=[NH2+])NCCCC([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "ODKSFYDXXFIFQN-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +xref: Gmelin:1345599 "Gmelin" +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:29016 ! arginine +relationship: is_conjugate_base_of CHEBI:32697 ! argininium(2+) + +[Term] +id: CHEBI:32697 +name: argininium(2+) +namespace: chebi_ontology +subset: 3_STAR +synonym: "(1-carboxy-4-guanidiniobutyl)ammonium" RELATED [ChEBI] +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "176.127" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "176.21700" RELATED MASS [ChEBI] +synonym: "arginine dication" RELATED [JCBN] +synonym: "argininediium" EXACT IUPAC_NAME [IUPAC] +synonym: "argininium(2+)" EXACT [JCBN] +synonym: "C6H16N4O2" RELATED FORMULA [ChEBI] +synonym: "H3arg(2+)" RELATED [IUPAC] +synonym: "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+2" RELATED InChI [ChEBI] +synonym: "NC(=[NH2+])NCCCC([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "ODKSFYDXXFIFQN-UHFFFAOYSA-P" RELATED InChIKey [ChEBI] +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:32696 ! argininium(1+) + +[Term] +id: CHEBI:32702 +name: L-tryptophanate +namespace: chebi_ontology +def: "The L-enantiomer of tryptophanate." [] +subset: 3_STAR +synonym: "(2S)-2-amino-3-(1H-indol-3-yl)propanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "203.082" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "203.21732" RELATED MASS [ChEBI] +synonym: "C11H11N2O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/p-1/t9-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-tryptophan anion" RELATED [JCBN] +synonym: "L-tryptophanate" EXACT IUPAC_NAME [IUPAC] +synonym: "N[C@@H](Cc1c[nH]c2ccccc12)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "QIVBCDIJIAJPQS-VIFPVBQESA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:4144998 "Beilstein" +xref: Gmelin:331343 "Gmelin" +is_a: CHEBI:32727 ! tryptophanate +is_a: CHEBI:59814 ! L-alpha-amino acid anion +relationship: has_role CHEBI:75767 ! animal metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: is_conjugate_base_of CHEBI:16828 ! L-tryptophan +relationship: is_enantiomer_of CHEBI:32716 ! D-tryptophanate + +[Term] +id: CHEBI:32704 +name: L-tryptophanium +namespace: chebi_ontology +def: "The L-enantiomer of tryptophanium." [] +subset: 3_STAR +synonym: "(1S)-1-carboxy-2-(1H-indol-3-yl)ethanaminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "205.098" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "205.23320" RELATED MASS [ChEBI] +synonym: "[NH3+][C@@H](Cc1c[nH]c2ccccc12)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C11H13N2O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/p+1/t9-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-tryptophan cation" RELATED [JCBN] +synonym: "L-tryptophanium" EXACT IUPAC_NAME [IUPAC] +synonym: "QIVBCDIJIAJPQS-VIFPVBQESA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:32728 ! tryptophanium +relationship: has_role CHEBI:75767 ! animal metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: is_conjugate_acid_of CHEBI:16828 ! L-tryptophan +relationship: is_enantiomer_of CHEBI:32717 ! D-tryptophanium + +[Term] +id: CHEBI:32716 +name: D-tryptophanate +namespace: chebi_ontology +def: "The D-enantiomer of tryptophanate." [] +subset: 3_STAR +synonym: "(2R)-2-amino-3-(1H-indol-3-yl)propanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "203.082" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "203.21732" RELATED MASS [ChEBI] +synonym: "C11H11N2O2" RELATED FORMULA [ChEBI] +synonym: "D-tryptophan anion" RELATED [JCBN] +synonym: "D-tryptophanate" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/p-1/t9-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H](Cc1c[nH]c2ccccc12)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "QIVBCDIJIAJPQS-SECBINFHSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:6847890 "Beilstein" +xref: Gmelin:331344 "Gmelin" +is_a: CHEBI:32727 ! tryptophanate +relationship: has_role CHEBI:76969 ! bacterial metabolite +relationship: is_conjugate_base_of CHEBI:16296 ! D-tryptophan +relationship: is_enantiomer_of CHEBI:32702 ! L-tryptophanate + +[Term] +id: CHEBI:32717 +name: D-tryptophanium +namespace: chebi_ontology +def: "The D-enantiomer of tryptophanium." [] +subset: 3_STAR +synonym: "(1R)-1-carboxy-2-(1H-indol-3-yl)ethanaminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "205.098" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "205.23320" RELATED MASS [ChEBI] +synonym: "[NH3+][C@H](Cc1c[nH]c2ccccc12)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C11H13N2O2" RELATED FORMULA [ChEBI] +synonym: "D-tryptophan cation" RELATED [JCBN] +synonym: "D-tryptophanium" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/p+1/t9-/m1/s1" RELATED InChI [ChEBI] +synonym: "QIVBCDIJIAJPQS-SECBINFHSA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:32728 ! tryptophanium +relationship: has_role CHEBI:76969 ! bacterial metabolite +relationship: is_conjugate_acid_of CHEBI:16296 ! D-tryptophan +relationship: is_enantiomer_of CHEBI:32704 ! L-tryptophanium + +[Term] +id: CHEBI:32727 +name: tryptophanate +namespace: chebi_ontology +def: "An alpha-amino-acid anion that is the conjugate base of tryptophan, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "2-amino-3-(1H-indol-3-yl)propanoate" RELATED [IUPAC] +synonym: "203.082" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "203.21732" RELATED MASS [ChEBI] +synonym: "C11H11N2O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/p-1" RELATED InChI [ChEBI] +synonym: "NC(Cc1c[nH]c2ccccc12)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "QIVBCDIJIAJPQS-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "trp(-)" RELATED [IUPAC] +synonym: "tryptophan anion" RELATED [JCBN] +synonym: "tryptophanate" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:4144997 "Beilstein" +xref: Gmelin:331342 "Gmelin" +xref: Reaxys:4144998 "Reaxys" +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_base_of CHEBI:27897 ! tryptophan + +[Term] +id: CHEBI:32728 +name: tryptophanium +namespace: chebi_ontology +def: "An alpha-amino-acid cation that is the conjugate acid of tryptophan, arising from protonation of the alpha-amino group." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "1-carboxy-2-(1H-indol-3-yl)ethanaminium" RELATED [IUPAC] +synonym: "205.098" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "205.23320" RELATED MASS [ChEBI] +synonym: "[NH3+]C(Cc1c[nH]c2ccccc12)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C11H13N2O2" RELATED FORMULA [ChEBI] +synonym: "Htrp(+)" RELATED [IUPAC] +synonym: "InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/p+1" RELATED InChI [ChEBI] +synonym: "QIVBCDIJIAJPQS-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "tryptophan cation" RELATED [JCBN] +synonym: "tryptophanium" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:27897 ! tryptophan + +[Term] +id: CHEBI:32784 +name: tyrosinate(1-) +namespace: chebi_ontology +def: "An alpha-amino-acid anion that is the conjugate base of tyrosine, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "180.066" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "180.18064" RELATED MASS [ChEBI] +synonym: "2-amino-3-(4-hydroxyphenyl)propanoate" RELATED [IUPAC] +synonym: "C9H10NO3" RELATED FORMULA [ChEBI] +synonym: "hydrogen tyrosinate" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/p-1" RELATED InChI [ChEBI] +synonym: "NC(Cc1ccc(O)cc1)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "OUYCCCASQSFEME-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "tyrosinate(1-)" EXACT [JCBN] +synonym: "tyrosine anion" RELATED [JCBN] +xref: Beilstein:3548387 "Beilstein" +xref: Beilstein:4139515 "Beilstein" +xref: Gmelin:329372 "Gmelin" +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_acid_of CHEBI:32785 ! tyrosinate(2-) +relationship: is_conjugate_base_of CHEBI:18186 ! tyrosine + +[Term] +id: CHEBI:32785 +name: tyrosinate(2-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "179.058" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "179.17270" RELATED MASS [ChEBI] +synonym: "2-amino-3-(4-oxidophenyl)propanoate" RELATED [IUPAC] +synonym: "C9H9NO3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/p-2" RELATED InChI [ChEBI] +synonym: "NC(Cc1ccc([O-])cc1)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "OUYCCCASQSFEME-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "tyrosinate" EXACT IUPAC_NAME [IUPAC] +synonym: "tyrosinate(2-)" EXACT [JCBN] +synonym: "tyrosine dianion" RELATED [JCBN] +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_base_of CHEBI:32784 ! tyrosinate(1-) + +[Term] +id: CHEBI:32786 +name: tyrosinium +namespace: chebi_ontology +def: "An alpha-amino-acid cation that is the conjugate acid of tyrosine, arising from protonation of the amino group." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "1-carboxy-2-(4-hydroxyphenyl)ethanaminium" RELATED [IUPAC] +synonym: "182.082" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "182.19652" RELATED MASS [ChEBI] +synonym: "[NH3+]C(Cc1ccc(O)cc1)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C9H12NO3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/p+1" RELATED InChI [ChEBI] +synonym: "OUYCCCASQSFEME-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "tyrosine cation" RELATED [JCBN] +synonym: "tyrosinium" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:18186 ! tyrosine + +[Term] +id: CHEBI:327995 +name: tyraminium +namespace: chebi_ontology +def: "An ammonium ion that is the conjugate acid of tyramine; major species at pH 7.3." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "138.092" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "138.18700" RELATED MASS [ChEBI] +synonym: "2-(4-hydroxyphenyl)ethanaminium" EXACT IUPAC_NAME [IUPAC] +synonym: "[NH3+]CCc1ccc(O)cc1" RELATED SMILES [ChEBI] +synonym: "C8H12NO" RELATED FORMULA [ChEBI] +synonym: "DZGWFCGJZKJUFP-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C8H11NO/c9-6-5-7-1-3-8(10)4-2-7/h1-4,10H,5-6,9H2/p+1" RELATED InChI [ChEBI] +synonym: "tyramine" RELATED [UniProt] +synonym: "tyraminium cation" RELATED [ChEBI] +synonym: "tyraminium(1+)" RELATED [ChEBI] +xref: MetaCyc:TYRAMINE +is_a: CHEBI:25375 ! monoamine molecular messenger +is_a: CHEBI:35274 ! ammonium ion +relationship: has_role CHEBI:25512 ! neurotransmitter +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:15760 ! tyramine + +[Term] +id: CHEBI:32816 +name: pyruvic acid +namespace: chebi_ontology +alt_id: CHEBI:26466 +alt_id: CHEBI:45253 +alt_id: CHEBI:8685 +def: "A 2-oxo monocarboxylic acid that is the 2-keto derivative of propionic acid. It is a metabolite obtained during glycolysis." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-ketopropionic acid" RELATED [ChemIDplus] +synonym: "2-Oxopropanoic acid" RELATED [KEGG_COMPOUND] +synonym: "2-oxopropanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "2-oxopropanoic acid" RELATED [ChEBI] +synonym: "2-Oxopropansaeure" RELATED [ChemIDplus] +synonym: "2-Oxopropionsaeure" RELATED [ChemIDplus] +synonym: "88.016" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "88.06206" RELATED MASS [ChEBI] +synonym: "Acetylformic acid" RELATED [HMDB] +synonym: "acetylformic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "acide pyruvique" RELATED [ChEBI] +synonym: "alpha-ketopropionic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "alpha-Oxopropionsaeure" RELATED [ChemIDplus] +synonym: "Brenztraubensaeure" RELATED [ChEBI] +synonym: "BTS" RELATED [ChemIDplus] +synonym: "C3H4O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "CH3COCOOH" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/C3H4O3/c1-2(4)3(5)6/h1H3,(H,5,6)" RELATED InChI [ChEBI] +synonym: "LCTONWCANYUPML-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Pyroracemic acid" RELATED [KEGG_COMPOUND] +synonym: "PYRUVIC ACID" EXACT [PDBeChem] +synonym: "Pyruvic acid" EXACT [KEGG_COMPOUND] +synonym: "pyruvic acid" EXACT [ChEBI] +xref: Beilstein:506211 "Beilstein" +xref: CAS:127-17-3 "ChemIDplus" +xref: DrugBank:DB00119 +xref: ECMDB:ECMDB00243 +xref: Gmelin:101087 "Gmelin" +xref: HMDB:HMDB00243 +xref: KEGG:C00022 +xref: KNApSAcK:C00001200 +xref: LIPID_MAPS_instance:LMFA01060077 "LIPID MAPS" +xref: MetaCyc:PYRUVATE +xref: PDBeChem:PYR +xref: PMID:11762589 "Europe PMC" +xref: PMID:19260671 "Europe PMC" +xref: PMID:22150460 "Europe PMC" +xref: PMID:22233273 "Europe PMC" +xref: PMID:22735334 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: Reaxys:506211 "Reaxys" +xref: Wikipedia:Pyruvic_acid +xref: YMDB:YMDB00175 +is_a: CHEBI:35910 ! 2-oxo monocarboxylic acid +relationship: has_functional_parent CHEBI:30768 ! propionic acid +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:15361 ! pyruvate + +[Term] +id: CHEBI:32820 +name: L-threoninate +namespace: chebi_ontology +def: "An L-alpha-amino acid anion that is the conjugate base of L-threonine, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "(2S,3R)-2-amino-3-hydroxybutanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "118.050" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "118.11126" RELATED MASS [ChEBI] +synonym: "AYFVYJQAPQTCCC-GBXIJSLDSA-M" RELATED InChIKey [ChEBI] +synonym: "C4H8NO3" RELATED FORMULA [ChEBI] +synonym: "C[C@@H](O)[C@H](N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/p-1/t2-,3+/m1/s1" RELATED InChI [ChEBI] +synonym: "L-threoninate" EXACT IUPAC_NAME [IUPAC] +synonym: "L-threonine anion" RELATED [JCBN] +xref: Beilstein:4376295 "Beilstein" +xref: Gmelin:464365 "Gmelin" +xref: Reaxys:4376295 "Reaxys" +is_a: CHEBI:32832 ! threoninate +is_a: CHEBI:59814 ! L-alpha-amino acid anion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_base_of CHEBI:16857 ! L-threonine +relationship: is_enantiomer_of CHEBI:32827 ! D-threoninate + +[Term] +id: CHEBI:32822 +name: L-threoninium +namespace: chebi_ontology +def: "The L-enantiomer of threoninium." [] +subset: 3_STAR +synonym: "(1S,2R)-1-carboxy-2-hydroxypropan-1-aminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "120.066" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "120.12714" RELATED MASS [ChEBI] +synonym: "AYFVYJQAPQTCCC-GBXIJSLDSA-O" RELATED InChIKey [ChEBI] +synonym: "C4H10NO3" RELATED FORMULA [ChEBI] +synonym: "C[C@@H](O)[C@H]([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/p+1/t2-,3+/m1/s1" RELATED InChI [ChEBI] +synonym: "L-threonine cation" RELATED [JCBN] +synonym: "L-threoninium" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:32833 ! threoninium +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:16857 ! L-threonine +relationship: is_enantiomer_of CHEBI:32828 ! D-threoninium + +[Term] +id: CHEBI:32827 +name: D-threoninate +namespace: chebi_ontology +def: "The D-enantiomer of threoninate." [] +subset: 3_STAR +synonym: "(2R,3S)-2-amino-3-hydroxybutanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "118.050" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "118.11126" RELATED MASS [ChEBI] +synonym: "AYFVYJQAPQTCCC-STHAYSLISA-M" RELATED InChIKey [ChEBI] +synonym: "C4H8NO3" RELATED FORMULA [ChEBI] +synonym: "C[C@H](O)[C@@H](N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "D-threoninate" EXACT IUPAC_NAME [IUPAC] +synonym: "D-threonine anion" RELATED [JCBN] +synonym: "InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/p-1/t2-,3+/m0/s1" RELATED InChI [ChEBI] +xref: Gmelin:1006174 "Gmelin" +is_a: CHEBI:32832 ! threoninate +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: is_conjugate_base_of CHEBI:16398 ! D-threonine +relationship: is_enantiomer_of CHEBI:32820 ! L-threoninate + +[Term] +id: CHEBI:32828 +name: D-threoninium +namespace: chebi_ontology +def: "The D-enantiomer of threoninium." [] +subset: 3_STAR +synonym: "(1R,2S)-1-carboxy-2-hydroxypropan-1-aminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "120.066" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "120.12714" RELATED MASS [ChEBI] +synonym: "AYFVYJQAPQTCCC-STHAYSLISA-O" RELATED InChIKey [ChEBI] +synonym: "C4H10NO3" RELATED FORMULA [ChEBI] +synonym: "C[C@H](O)[C@@H]([NH3+])C(O)=O" RELATED SMILES [ChEBI] +synonym: "D-threonine cation" RELATED [JCBN] +synonym: "D-threoninium" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/p+1/t2-,3+/m0/s1" RELATED InChI [ChEBI] +is_a: CHEBI:32833 ! threoninium +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: is_conjugate_acid_of CHEBI:16398 ! D-threonine +relationship: is_enantiomer_of CHEBI:32822 ! L-threoninium + +[Term] +id: CHEBI:32832 +name: threoninate +namespace: chebi_ontology +subset: 3_STAR +synonym: "C4H8NO3" RELATED FORMULA [ChEBI] +synonym: "rel-(2R,3S)-2-amino-3-hydroxybutanoate" RELATED [IUPAC] +synonym: "threoninate" EXACT IUPAC_NAME [IUPAC] +synonym: "threonine anion" RELATED [JCBN] +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_base_of CHEBI:26986 ! threonine + +[Term] +id: CHEBI:32833 +name: threoninium +namespace: chebi_ontology +subset: 3_STAR +synonym: "C4H10NO3" RELATED FORMULA [ChEBI] +synonym: "rel-(1R,2S)-1-carboxy-2-hydroxypropan-1-aminium" RELATED [IUPAC] +synonym: "threonine cation" RELATED [JCBN] +synonym: "threoninium" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:26986 ! threonine + +[Term] +id: CHEBI:32836 +name: L-serinate +namespace: chebi_ontology +def: "A serinate that is the conjugate base of L-serine, obtained by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "(2S)-2-amino-3-hydroxypropanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "104.035" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "104.08468" RELATED MASS [ChEBI] +synonym: "C3H6NO3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/p-1/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-serinate" EXACT IUPAC_NAME [IUPAC] +synonym: "L-serine anion" RELATED [JCBN] +synonym: "MTCFGRXMJLQNBG-REOHCLBHSA-M" RELATED InChIKey [ChEBI] +synonym: "N[C@@H](CO)C([O-])=O" RELATED SMILES [ChEBI] +xref: Beilstein:4372751 "Beilstein" +xref: Gmelin:324693 "Gmelin" +is_a: CHEBI:32845 ! serinate +is_a: CHEBI:59814 ! L-alpha-amino acid anion +relationship: is_conjugate_base_of CHEBI:17115 ! L-serine +relationship: is_enantiomer_of CHEBI:32840 ! D-serinate + +[Term] +id: CHEBI:32837 +name: L-serinium +namespace: chebi_ontology +def: "A serinium that is the conjugate acid of L-serine, obtained by protonation of the amino group." [] +subset: 3_STAR +synonym: "(1S)-1-carboxy-2-hydroxyethanaminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "106.050" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "106.10056" RELATED MASS [ChEBI] +synonym: "[NH3+][C@@H](CO)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C3H8NO3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/p+1/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-serine cation" RELATED [JCBN] +synonym: "L-serinium" EXACT IUPAC_NAME [IUPAC] +synonym: "MTCFGRXMJLQNBG-REOHCLBHSA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:32846 ! serinium +relationship: is_conjugate_acid_of CHEBI:17115 ! L-serine +relationship: is_enantiomer_of CHEBI:32841 ! D-serinium + +[Term] +id: CHEBI:32840 +name: D-serinate +namespace: chebi_ontology +def: "The D-enantiomer of serinate." [] +subset: 3_STAR +synonym: "(2R)-2-amino-3-hydroxypropanoate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "104.035" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "104.08468" RELATED MASS [ChEBI] +synonym: "C3H6NO3" RELATED FORMULA [ChEBI] +synonym: "D-serinate" EXACT IUPAC_NAME [IUPAC] +synonym: "D-serine anion" RELATED [JCBN] +synonym: "InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/p-1/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "MTCFGRXMJLQNBG-UWTATZPHSA-M" RELATED InChIKey [ChEBI] +synonym: "N[C@H](CO)C([O-])=O" RELATED SMILES [ChEBI] +xref: Gmelin:745975 "Gmelin" +is_a: CHEBI:32845 ! serinate +relationship: is_conjugate_base_of CHEBI:16523 ! D-serine +relationship: is_enantiomer_of CHEBI:32836 ! L-serinate + +[Term] +id: CHEBI:32841 +name: D-serinium +namespace: chebi_ontology +def: "The D-enantiomer of serinium." [] +subset: 3_STAR +synonym: "(1R)-1-carboxy-2-hydroxyethanaminium" RELATED [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "106.050" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "106.10056" RELATED MASS [ChEBI] +synonym: "[NH3+][C@H](CO)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C3H8NO3" RELATED FORMULA [ChEBI] +synonym: "D-serine cation" RELATED [JCBN] +synonym: "D-serinium" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/p+1/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "MTCFGRXMJLQNBG-UWTATZPHSA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:32846 ! serinium +relationship: is_conjugate_acid_of CHEBI:16523 ! D-serine +relationship: is_enantiomer_of CHEBI:32837 ! L-serinium + +[Term] +id: CHEBI:32845 +name: serinate +namespace: chebi_ontology +def: "An alpha-amino-acid anion that is the conjugate base of serine." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "104.035" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "104.08468" RELATED MASS [ChEBI] +synonym: "2-amino-3-hydroxypropanoate" RELATED [IUPAC] +synonym: "C3H6NO3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/p-1" RELATED InChI [ChEBI] +synonym: "MTCFGRXMJLQNBG-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "NC(CO)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "serinate" EXACT IUPAC_NAME [IUPAC] +synonym: "serine anion" RELATED [JCBN] +xref: Gmelin:324692 "Gmelin" +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:17822 ! serine + +[Term] +id: CHEBI:32846 +name: serinium +namespace: chebi_ontology +def: "An alpha-amino-acid cation that is the conjugate acid of serine." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "1-carboxy-2-hydroxyethanaminium" RELATED [IUPAC] +synonym: "106.050" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "106.10056" RELATED MASS [ChEBI] +synonym: "[NH3+]C(CO)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C3H8NO3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/p+1" RELATED InChI [ChEBI] +synonym: "MTCFGRXMJLQNBG-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "serine cation" RELATED [JCBN] +synonym: "serinium" EXACT IUPAC_NAME [IUPAC] +xref: Gmelin:1925675 "Gmelin" +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:17822 ! serine + +[Term] +id: CHEBI:32871 +name: prolinate +namespace: chebi_ontology +def: "An alpha-amino-acid anion that is the conjugate base of proline, arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "114.056" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "114.12256" RELATED MASS [ChEBI] +synonym: "[O-]C(=O)C1CCCN1" RELATED SMILES [ChEBI] +synonym: "C5H8NO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/p-1" RELATED InChI [ChEBI] +synonym: "ONIBWKKTOPOVIA-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "pro(-)" RELATED [IUPAC] +synonym: "prolinate" EXACT IUPAC_NAME [IUPAC] +synonym: "proline anion" RELATED [JCBN] +synonym: "pyrrolidine-2-carboxylate" RELATED [IUPAC] +xref: Beilstein:5387795 "Beilstein" +xref: Gmelin:50151 "Gmelin" +xref: Reaxys:5387795 "Reaxys" +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_base_of CHEBI:26271 ! proline + +[Term] +id: CHEBI:32872 +name: prolinium +namespace: chebi_ontology +def: "An alpha-amino-acid cation that is the conjugate acid of proline, arising from protonation of the amino group." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "116.071" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "116.13840" RELATED MASS [ChEBI] +synonym: "2-carboxypyrrolidinium" RELATED [IUPAC] +synonym: "C5H10NO2" RELATED FORMULA [ChEBI] +synonym: "H2pro(+)" RELATED [IUPAC] +synonym: "InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/p+1" RELATED InChI [ChEBI] +synonym: "OC(=O)C1CCC[NH2+]1" RELATED SMILES [ChEBI] +synonym: "ONIBWKKTOPOVIA-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "proline cation" RELATED [JCBN] +synonym: "prolinium" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33719 ! alpha-amino-acid cation +relationship: is_conjugate_acid_of CHEBI:26271 ! proline + +[Term] +id: CHEBI:32875 +name: methyl group +namespace: chebi_ontology +alt_id: CHEBI:2449 +alt_id: CHEBI:25251 +alt_id: CHEBI:25252 +alt_id: CHEBI:48801 +def: "An alkyl group that is the univalent group derived from methane by removal of a hydrogen atom." [] +subset: 3_STAR +synonym: "-CH3" RELATED [IUPAC] +synonym: "-Me" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "15.023" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "15.03452" RELATED MASS [ChEBI] +synonym: "alanine side-chain" RELATED [ChEBI] +synonym: "CH3" RELATED FORMULA [ChEBI] +synonym: "CH3-" RELATED [IUPAC] +synonym: "group methyle" RELATED [ChEBI] +synonym: "grupo metilo" RELATED [ChEBI] +synonym: "methyl" EXACT IUPAC_NAME [IUPAC] +synonym: "METHYL GROUP" EXACT [PDBeChem] +synonym: "methyl group" EXACT [UniProt] +synonym: "Methylgruppe" RELATED [ChEBI] +is_a: CHEBI:22323 ! alkyl group +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: is_substituent_group_from CHEBI:16183 ! methane + +[Term] +id: CHEBI:32876 +name: tertiary amine +namespace: chebi_ontology +alt_id: CHEBI:26879 +alt_id: CHEBI:9458 +def: "A compound formally derived from ammonia by replacing three hydrogen atoms by hydrocarbyl groups." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "14.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "14.00670" RELATED MASS [ChEBI] +synonym: "[*]N([*])[*]" RELATED SMILES [ChEBI] +synonym: "NR3" RELATED FORMULA [ChEBI] +synonym: "R3N" RELATED [IUPAC] +synonym: "tertiaeres Amin" RELATED [ChEBI] +synonym: "Tertiary amine" EXACT [KEGG_COMPOUND] +synonym: "tertiary amines" EXACT IUPAC_NAME [IUPAC] +xref: KEGG:C02196 +is_a: CHEBI:32952 ! amine +is_a: CHEBI:50996 ! tertiary amino compound +relationship: is_conjugate_base_of CHEBI:137982 ! tertiary amine(1+) + +[Term] +id: CHEBI:32877 +name: primary amine +namespace: chebi_ontology +alt_id: CHEBI:26263 +alt_id: CHEBI:26265 +alt_id: CHEBI:8407 +alt_id: CHEBI:8409 +def: "A compound formally derived from ammonia by replacing one hydrogen atom by a hydrocarbyl group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "16.019" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "16.02260" RELATED MASS [ChEBI] +synonym: "H2NR" RELATED FORMULA [ChEBI] +synonym: "N[*]" RELATED SMILES [ChEBI] +synonym: "primaeres Amin" RELATED [ChEBI] +synonym: "Primary amine" EXACT [KEGG_COMPOUND] +synonym: "primary amines" EXACT IUPAC_NAME [IUPAC] +synonym: "Primary monoamine" RELATED [KEGG_COMPOUND] +synonym: "R-NH2" RELATED [IUPAC] +synonym: "RCH2NH2" RELATED [KEGG_COMPOUND] +xref: KEGG:C00375 +xref: KEGG:C00893 +xref: KEGG:C02580 +is_a: CHEBI:32952 ! amine +is_a: CHEBI:50994 ! primary amino compound +relationship: is_conjugate_base_of CHEBI:65296 ! primary ammonium ion + +[Term] +id: CHEBI:32952 +name: amine +namespace: chebi_ontology +alt_id: CHEBI:13814 +alt_id: CHEBI:22474 +alt_id: CHEBI:2641 +def: "A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by hydrocarbyl groups." [] +subset: 3_STAR +synonym: "Amin" RELATED [ChEBI] +synonym: "Amine" EXACT [KEGG_COMPOUND] +synonym: "amines" EXACT IUPAC_NAME [IUPAC] +synonym: "Substituted amine" RELATED [KEGG_COMPOUND] +xref: KEGG:C00706 +is_a: CHEBI:50047 ! organic amino compound + +[Term] +id: CHEBI:32954 +name: sodium acetate +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "82.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "82.03379" RELATED MASS [ChEBI] +synonym: "[Na+].CC([O-])=O" RELATED SMILES [ChEBI] +synonym: "acetic acid, sodium salt" RELATED [ChemIDplus] +synonym: "anhydrous sodium acetate" RELATED [ChemIDplus] +synonym: "C2H3NaO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C2H4O2.Na/c1-2(3)4;/h1H3,(H,3,4);/q;+1/p-1" RELATED InChI [ChEBI] +synonym: "Natriumazetat" RELATED [ChEBI] +synonym: "sodium acetate" EXACT IUPAC_NAME [IUPAC] +synonym: "sodium acetate anhydrous" RELATED [ChemIDplus] +synonym: "VMHLLURERBWHNL-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3595639 "Beilstein" +xref: CAS:127-09-3 "ChemIDplus" +xref: Gmelin:20502 "Gmelin" +xref: Wikipedia:Sodium_Acetate +is_a: CHEBI:38700 ! organic sodium salt +relationship: has_part CHEBI:30089 ! acetate + +[Term] +id: CHEBI:32988 +name: amide +namespace: chebi_ontology +alt_id: CHEBI:22473 +alt_id: CHEBI:2633 +def: "An amide is a derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group." [] +subset: 3_STAR +synonym: "Amide" EXACT [KEGG_COMPOUND] +synonym: "amides" EXACT IUPAC_NAME [IUPAC] +xref: KEGG:C00241 +is_a: CHEBI:51143 ! nitrogen molecular entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33186 +name: malononitrile +namespace: chebi_ontology +def: "A dinitrile that is methane subtituted by two cyano groups." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "66.022" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "66.06140" RELATED MASS [ChEBI] +synonym: "C3H2N2" RELATED FORMULA [ChEBI] +synonym: "CUONGYYJJVDODC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "dicyanmethane" RELATED [ChemIDplus] +synonym: "dicyanomethane" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/C3H2N2/c4-2-1-3-5/h1H2" RELATED InChI [ChEBI] +synonym: "malononitrile" EXACT IUPAC_NAME [IUPAC] +synonym: "Malonsaeuredinitril" RELATED [ChEBI] +synonym: "N#CCC#N" RELATED SMILES [ChEBI] +synonym: "propanedinitrile" RELATED [NIST_Chemistry_WebBook] +xref: Beilstein:773697 "Beilstein" +xref: CAS:109-77-3 "NIST Chemistry WebBook" +xref: Gmelin:1303 "Gmelin" +xref: PMID:24683341 "Europe PMC" +xref: Reaxys:773697 "Reaxys" +xref: Wikipedia:Malononitrile +is_a: CHEBI:51308 ! dinitrile +is_a: CHEBI:80291 ! aliphatic nitrile + +[Term] +id: CHEBI:33187 +name: oxomalononitrile +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "80.001" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "80.04498" RELATED MASS [ChEBI] +synonym: "C3N2O" RELATED FORMULA [ChEBI] +synonym: "carbonyl dicyanide" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C3N2O/c4-1-3(6)2-5" RELATED InChI [ChEBI] +synonym: "JSGHQDAEHDRLOI-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "mesoxalonitrile" RELATED [ChemIDplus] +synonym: "NC-CO-CN" RELATED [IUPAC] +synonym: "O=C(C#N)C#N" RELATED SMILES [ChEBI] +synonym: "oxomalononitrile" EXACT [IUPAC] +synonym: "oxopropanedinitrile" RELATED [NIST_Chemistry_WebBook] +xref: Beilstein:1699394 "Beilstein" +xref: CAS:1115-12-4 "NIST Chemistry WebBook" +xref: Gmelin:217598 "Gmelin" +is_a: CHEBI:51852 ! alpha-ketonitrile +relationship: has_functional_parent CHEBI:33186 ! malononitrile + +[Term] +id: CHEBI:33189 +name: hydrazonomalononitrile +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "94.028" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "94.07494" RELATED MASS [ChEBI] +synonym: "C3H2N4" RELATED FORMULA [ChEBI] +synonym: "carbonohydrazonoyl dicyanide" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C3H2N4/c4-1-3(2-5)7-6/h6H2" RELATED InChI [ChEBI] +synonym: "NC-C(=NNH2)-CN" RELATED [IUPAC] +synonym: "NN=C(C#N)C#N" RELATED SMILES [ChEBI] +synonym: "NYVGCXQGEYONIC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1903731 "Beilstein" +is_a: CHEBI:18379 ! nitrile +is_a: CHEBI:38532 ! hydrazone +relationship: has_functional_parent CHEBI:33187 ! oxomalononitrile + +[Term] +id: CHEBI:33191 +name: potassium cyanide +namespace: chebi_ontology +def: "A cyanide salt containing equal numbers of potassium cations and cyanide anions." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "64.967" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "65.116" RELATED MASS [ChEBI] +synonym: "[C-]#N.[K+]" RELATED SMILES [ChEBI] +synonym: "CKN" RELATED FORMULA [ChEBI] +synonym: "cyanide of potassium" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/CN.K/c1-2;/q-1;+1" RELATED InChI [ChEBI] +synonym: "Kaliumcyanid" RELATED [ChEBI] +synonym: "Kaliumzyanid" RELATED [ChEBI] +synonym: "KCN" RELATED [IUPAC] +synonym: "NNFCIKHAZHQZJG-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "potassium cyanide" EXACT IUPAC_NAME [IUPAC] +synonym: "Zyankali" RELATED [ChEBI] +xref: Beilstein:3593645 "Beilstein" +xref: Beilstein:4652394 "ChemIDplus" +xref: CAS:151-50-8 "NIST Chemistry WebBook" +xref: colombos:KCN +xref: Gmelin:647425 "Gmelin" +xref: PMID:16850258 "Europe PMC" +xref: PMID:24318282 "Europe PMC" +xref: PMID:25850896 "Europe PMC" +xref: PMID:27170681 "Europe PMC" +xref: PMID:27170682 "Europe PMC" +xref: PMID:27250664 "Europe PMC" +xref: PMID:27666790 "Europe PMC" +xref: PMID:27737792 "Europe PMC" +xref: Wikipedia:Potassium_cyanide +is_a: CHEBI:26218 ! potassium salt +is_a: CHEBI:36572 ! cyanide salt +is_a: CHEBI:64708 ! one-carbon compound +relationship: has_role CHEBI:134084 ! EC 1.15.1.1 (superoxide dismutase) inhibitor +relationship: has_role CHEBI:38500 ! EC 1.9.3.1 (cytochrome c oxidase) inhibitor +relationship: has_role CHEBI:50910 ! neurotoxin + +[Term] +id: CHEBI:33198 +name: D-gluconic acid +namespace: chebi_ontology +alt_id: CHEBI:20986 +alt_id: CHEBI:4157 +alt_id: CHEBI:42715 +def: "A gluconic acid having D-configuration." [] +subset: 3_STAR +synonym: "(2R,3S,4R,5R)-2,3,4,5,6-pentahydroxyhexanoic acid" RELATED [HMDB] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "196.058" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "196.15528" RELATED MASS [ChEBI] +synonym: "C6H12O7" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-gluco-Hexonic acid" RELATED [KEGG_COMPOUND] +synonym: "D-Gluconic acid" EXACT [KEGG_COMPOUND] +synonym: "D-gluconic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "D-Gluconsaeure" RELATED [ChEBI] +synonym: "D-Glukonsaeure" RELATED [ChEBI] +synonym: "Dextronic acid" RELATED [ChemIDplus] +synonym: "GLUCONIC ACID" RELATED [PDBeChem] +synonym: "Gluconic acid" RELATED [ChemIDplus] +synonym: "Glycogenic acid" RELATED [HMDB] +synonym: "Hexonic acid" RELATED [HMDB] +synonym: "InChI=1S/C6H12O7/c7-1-2(8)3(9)4(10)5(11)6(12)13/h2-5,7-11H,1H2,(H,12,13)/t2-,3-,4+,5-/m1/s1" RELATED InChI [ChEBI] +synonym: "Maltonic acid" RELATED [HMDB] +synonym: "OC[C@@H](O)[C@@H](O)[C@H](O)[C@@H](O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "RGHNJXZEOKUKBD-SQOUGZDYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1726055 "Beilstein" +xref: CAS:526-95-4 "KEGG COMPOUND" +xref: Drug_Central:3264 "DrugCentral" +xref: Gmelin:83545 "Gmelin" +xref: HMDB:HMDB00625 +xref: KEGG:C00257 +xref: KNApSAcK:C00007303 +xref: MetaCyc:GLUCONATE +xref: PDBeChem:GCO +xref: PMID:11777404 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:19577953 "Europe PMC" +xref: PMID:20222845 "Europe PMC" +xref: PMID:21086198 "Europe PMC" +xref: PMID:21424687 "Europe PMC" +xref: PMID:21819772 "Europe PMC" +xref: PMID:22352719 "Europe PMC" +xref: PMID:22541639 "Europe PMC" +xref: PMID:22688246 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: PMID:24024763 "Europe PMC" +xref: Reaxys:1726055 "Reaxys" +xref: Wikipedia:Gluconic_acid +is_a: CHEBI:24266 ! gluconic acid +relationship: has_role CHEBI:38161 ! chelator +relationship: has_role CHEBI:76964 ! Penicillium metabolite +relationship: is_conjugate_acid_of CHEBI:18391 ! D-gluconate +relationship: is_enantiomer_of CHEBI:86359 ! L-gluconic acid + +[Term] +id: CHEBI:33229 +name: vitamin +namespace: chebi_ontology +alt_id: CHEBI:10004 +alt_id: CHEBI:27305 +def: "An organic substance that is distributed in foodstuffs, is distinct from the main organic components of food (protein, carbohydrate and fat) and is needed for the normal nutrition of the organism in question. The term \"vitamines\" (from vita + amines) was coined in 1912 by Casimir Funk, who believed that these compounds were amines." [] +subset: 3_STAR +synonym: "Vitamin" EXACT [ChEBI] +synonym: "vitamina" RELATED [ChEBI] +synonym: "vitaminas" RELATED [ChEBI] +synonym: "vitamine" RELATED [ChEBI] +synonym: "vitamines" RELATED [ChEBI] +synonym: "vitamins" RELATED [ChEBI] +synonym: "vitaminum" RELATED [ChEBI] +is_a: CHEBI:78295 ! food component + +[Term] +id: CHEBI:33231 +name: antitubercular agent +namespace: chebi_ontology +def: "A substance that kills or slows the growth of Mycobacterium tuberculosis and is used in the treatment of tuberculosis." [] +subset: 3_STAR +synonym: "antitubercular" RELATED [ChEBI] +synonym: "antitubercular agents" RELATED [ChEBI] +synonym: "antitubercular drug" RELATED [ChEBI] +synonym: "antitubercular drugs" RELATED [ChEBI] +synonym: "tuberculostatic agent" RELATED [ChEBI] +is_a: CHEBI:64912 ! antimycobacterial drug + +[Term] +id: CHEBI:33232 +name: application +namespace: chebi_ontology +def: "Intended use of the molecular entity or part thereof by humans." [] +subset: 3_STAR +is_a: CHEBI:50906 ! role + +[Term] +id: CHEBI:33233 +name: fundamental particle +namespace: chebi_ontology +def: "A particle not known to have substructure." [] +subset: 3_STAR +synonym: "elementary particle" EXACT IUPAC_NAME [IUPAC] +synonym: "elementary particles" RELATED [ChEBI] +is_a: CHEBI:36342 ! subatomic particle + +[Term] +id: CHEBI:33238 +name: monoatomic entity +namespace: chebi_ontology +def: "A monoatomic entity is a molecular entity consisting of a single atom." [] +subset: 3_STAR +synonym: "atomic entity" RELATED [ChEBI] +synonym: "monoatomic entities" RELATED [ChEBI] +is_a: CHEBI:33259 ! elemental molecular entity + +[Term] +id: CHEBI:33240 +name: coordination entity +namespace: chebi_ontology +def: "An assembly consisting of a central atom (usually metallic) to which is attached a surrounding array of other groups of atoms (ligands)." [] +subset: 3_STAR +synonym: "coordination compounds" RELATED [ChEBI] +synonym: "coordination entities" EXACT IUPAC_NAME [IUPAC] +synonym: "coordination entity" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:37577 ! heteroatomic molecular entity + +[Term] +id: CHEBI:33241 +name: oxoacid derivative +namespace: chebi_ontology +subset: 3_STAR +synonym: "oxoacid derivatives" RELATED [ChEBI] +is_a: CHEBI:37577 ! heteroatomic molecular entity +relationship: has_functional_parent CHEBI:24833 ! oxoacid + +[Term] +id: CHEBI:33242 +name: inorganic hydride +namespace: chebi_ontology +subset: 3_STAR +synonym: "inorganic hydrides" RELATED [ChEBI] +is_a: CHEBI:24835 ! inorganic molecular entity +is_a: CHEBI:33692 ! hydrides + +[Term] +id: CHEBI:33245 +name: organic fundamental parent +namespace: chebi_ontology +def: "An organic fundamental parent is a structure used as a basis for substitutive names in organic nomenclature, containing, in addition to one or more hydrogen atoms, a single atom of an element, a number of atoms (alike or different) linked together to form an unbranched chain, a monocyclic or polycyclic ring system, or a ring assembly or ring/chain system." [] +subset: 3_STAR +synonym: "organic fundamental parents" RELATED [ChEBI] +synonym: "organic parent hydrides" RELATED [ChEBI] +is_a: CHEBI:37175 ! organic hydride +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:33246 +name: inorganic group +namespace: chebi_ontology +def: "Any substituent group which does not contain carbon." [] +subset: 3_STAR +synonym: "inorganic groups" RELATED [ChEBI] +is_a: CHEBI:24433 ! group + +[Term] +id: CHEBI:33247 +name: organic group +namespace: chebi_ontology +def: "Any substituent group or skeleton containing carbon." [] +subset: 3_STAR +synonym: "organic groups" RELATED [ChEBI] +is_a: CHEBI:24433 ! group +relationship: is_substituent_group_from CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:33248 +name: hydrocarbyl group +namespace: chebi_ontology +def: "A univalent group formed by removing a hydrogen atom from a hydrocarbon." [] +subset: 3_STAR +synonym: "groupe hydrocarbyle" RELATED [IUPAC] +synonym: "grupo hidrocarbilo" RELATED [IUPAC] +synonym: "grupos hidrocarbilo" RELATED [IUPAC] +synonym: "hydrocarbyl group" EXACT [IUPAC] +synonym: "hydrocarbyl groups" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33249 ! organyl group +relationship: is_substituent_group_from CHEBI:24632 ! hydrocarbon + +[Term] +id: CHEBI:33249 +name: organyl group +namespace: chebi_ontology +def: "Any organic substituent group, regardless of functional type, having one free valence at a carbon atom." [] +subset: 3_STAR +synonym: "groupe organyle" RELATED [IUPAC] +synonym: "grupo organilo" RELATED [IUPAC] +synonym: "grupos organilo" RELATED [IUPAC] +synonym: "organyl group" EXACT IUPAC_NAME [IUPAC] +synonym: "organyl groups" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:51447 ! organic univalent group + +[Term] +id: CHEBI:33250 +name: atom +namespace: chebi_ontology +alt_id: CHEBI:22671 +alt_id: CHEBI:23907 +def: "A chemical entity constituting the smallest component of an element having the chemical properties of the element." [] +subset: 3_STAR +synonym: "atom" EXACT IUPAC_NAME [IUPAC] +synonym: "atome" RELATED [IUPAC] +synonym: "atomo" RELATED [IUPAC] +synonym: "atoms" RELATED [ChEBI] +synonym: "atomus" RELATED [ChEBI] +synonym: "element" RELATED [ChEBI] +synonym: "elements" RELATED [ChEBI] +is_a: CHEBI:24431 ! chemical entity +relationship: has_part CHEBI:10545 ! electron +relationship: has_part CHEBI:33252 ! atomic nucleus + +[Term] +id: CHEBI:33252 +name: atomic nucleus +namespace: chebi_ontology +def: "A nucleus is the positively charged central portion of an atom, excluding the orbital electrons." [] +subset: 3_STAR +synonym: "Atomkern" RELATED [ChEBI] +synonym: "Kern" RELATED [ChEBI] +synonym: "noyau" RELATED [IUPAC] +synonym: "noyau atomique" RELATED [ChEBI] +synonym: "nuclei" RELATED [ChEBI] +synonym: "nucleo" RELATED [IUPAC] +synonym: "nucleo atomico" RELATED [ChEBI] +synonym: "nucleus" EXACT IUPAC_NAME [IUPAC] +synonym: "nucleus atomi" RELATED [ChEBI] +is_a: CHEBI:36347 ! nuclear particle +relationship: has_part CHEBI:33253 ! nucleon + +[Term] +id: CHEBI:33253 +name: nucleon +namespace: chebi_ontology +def: "Heavy nuclear particle: proton or neutron." [] +subset: 3_STAR +synonym: "nucleon" EXACT [IUPAC] +synonym: "nucleon" EXACT IUPAC_NAME [IUPAC] +synonym: "nucleons" RELATED [ChEBI] +synonym: "Nukleon" RELATED [ChEBI] +synonym: "Nukleonen" RELATED [ChEBI] +is_a: CHEBI:36339 ! baryon +is_a: CHEBI:36347 ! nuclear particle + +[Term] +id: CHEBI:33256 +name: primary amide +namespace: chebi_ontology +def: "A derivative of an oxoacid RkE(=O)l(OH)m (l =/= 0) in which an acidic hydroxy group has been replaced by an amino or substituted amino group." [] +subset: 3_STAR +synonym: "primary amide" EXACT [IUPAC] +synonym: "primary amides" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:32988 ! amide +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33257 +name: secondary amide +namespace: chebi_ontology +def: "A derivative of two oxoacids RkE(=O)l(OH)m (l =/= 0) in which two acyl groups are attached to the amino or substituted amino group." [] +subset: 3_STAR +synonym: "secondary amide" EXACT IUPAC_NAME [IUPAC] +synonym: "secondary amides" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:32988 ! amide + +[Term] +id: CHEBI:33259 +name: elemental molecular entity +namespace: chebi_ontology +def: "A molecular entity all atoms of which have the same atomic number." [] +subset: 3_STAR +synonym: "homoatomic entity" RELATED [ChEBI] +synonym: "homoatomic molecular entities" RELATED [ChEBI] +synonym: "homoatomic molecular entity" RELATED [ChEBI] +is_a: CHEBI:23367 ! molecular entity + +[Term] +id: CHEBI:33261 +name: organosulfur compound +namespace: chebi_ontology +alt_id: CHEBI:23010 +alt_id: CHEBI:25714 +def: "An organosulfur compound is a compound containing at least one carbon-sulfur bond." [] +subset: 3_STAR +synonym: "organosulfur compound" EXACT [ChEBI] +synonym: "organosulfur compounds" RELATED [ChEBI] +xref: Wikipedia:Organosulfur_compounds +is_a: CHEBI:26835 ! sulfur molecular entity +is_a: CHEBI:36962 ! organochalcogen compound + +[Term] +id: CHEBI:33262 +name: elemental oxygen +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:24835 ! inorganic molecular entity +is_a: CHEBI:25806 ! oxygen molecular entity +is_a: CHEBI:33259 ! elemental molecular entity + +[Term] +id: CHEBI:33263 +name: diatomic oxygen +namespace: chebi_ontology +subset: 3_STAR +synonym: "O2" RELATED FORMULA [ChEBI] +is_a: CHEBI:33262 ! elemental oxygen + +[Term] +id: CHEBI:33273 +name: polyatomic anion +namespace: chebi_ontology +def: "An anion consisting of more than one atom." [] +subset: 3_STAR +synonym: "polyatomic anions" RELATED [ChEBI] +is_a: CHEBI:22563 ! anion +is_a: CHEBI:36358 ! polyatomic ion +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33280 +name: molecular messenger +namespace: chebi_ontology +subset: 3_STAR +synonym: "chemical messenger" RELATED [ChEBI] +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:33281 +name: antimicrobial agent +namespace: chebi_ontology +alt_id: CHEBI:22582 +def: "A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans." [] +subset: 3_STAR +synonym: "antibiotic" RELATED [ChEBI] +synonym: "antibiotics" RELATED [ChEBI] +synonym: "Antibiotika" RELATED [ChEBI] +synonym: "Antibiotikum" RELATED [ChEBI] +synonym: "antibiotique" RELATED [IUPAC] +synonym: "antimicrobial" RELATED [ChEBI] +synonym: "antimicrobial agents" RELATED [ChEBI] +synonym: "antimicrobials" RELATED [ChEBI] +synonym: "microbicide" RELATED [ChEBI] +synonym: "microbicides" RELATED [ChEBI] +xref: PMID:12964249 "Europe PMC" +xref: PMID:22117953 "Europe PMC" +xref: PMID:22439833 "Europe PMC" +xref: PMID:22849268 "Europe PMC" +xref: PMID:22849276 "Europe PMC" +xref: PMID:22958833 "Europe PMC" +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:33282 +name: antibacterial agent +namespace: chebi_ontology +def: "A substance that kills or slows the growth of bacteria." [] +subset: 3_STAR +synonym: "antibacterial agents" RELATED [ChEBI] +synonym: "antibacterials" RELATED [ChEBI] +synonym: "bactericide" RELATED [ChEBI] +synonym: "bactericides" RELATED [ChEBI] +is_a: CHEBI:33281 ! antimicrobial agent + +[Term] +id: CHEBI:33284 +name: nutrient +namespace: chebi_ontology +def: "A nutrient is a chemical element needed by all life forms." [] +subset: 3_STAR +synonym: "nutrients" RELATED [ChEBI] +is_a: CHEBI:78295 ! food component + +[Term] +id: CHEBI:33285 +name: heteroorganic entity +namespace: chebi_ontology +def: "A heteroorganic entity is an organic molecular entity in which carbon atoms or organic groups are bonded directly to one or more heteroatoms." [] +subset: 3_STAR +synonym: "heteroorganic entities" RELATED [ChEBI] +synonym: "organoelement compounds" RELATED [ChEBI] +is_a: CHEBI:50860 ! organic molecular entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33286 +name: agrochemical +namespace: chebi_ontology +def: "An agrochemical is a substance that is used in agriculture or horticulture." [] +subset: 3_STAR +synonym: "agrichemical" RELATED [ChEBI] +synonym: "agrichemicals" RELATED [ChEBI] +synonym: "agricultural chemicals" RELATED [ChEBI] +synonym: "agrochemicals" RELATED [ChEBI] +xref: Wikipedia:Agrochemical +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:33287 +name: fertilizer +namespace: chebi_ontology +def: "A fertilizer is any substance that is added to soil or water to assist the growth of plants." [] +subset: 3_STAR +synonym: "fertiliser" RELATED [ChEBI] +synonym: "fertilizers" RELATED [ChEBI] +is_a: CHEBI:33286 ! agrochemical + +[Term] +id: CHEBI:33288 +name: rodenticide +namespace: chebi_ontology +def: "A substance used to destroy rodent pests." [] +subset: 3_STAR +synonym: "rodenticides" RELATED [ChEBI] +xref: Wikipedia:Rodenticide +is_a: CHEBI:25944 ! pesticide + +[Term] +id: CHEBI:33292 +name: fuel +namespace: chebi_ontology +def: "An energy-rich substance that can be transformed with release of usable energy." [] +subset: 3_STAR +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:33295 +name: diagnostic agent +namespace: chebi_ontology +def: "A substance administered to aid diagnosis of a disease." [] +subset: 3_STAR +synonym: "diagnostic aid" RELATED [ChEBI] +is_a: CHEBI:52217 ! pharmaceutical + +[Term] +id: CHEBI:33296 +name: alkali metal molecular entity +namespace: chebi_ontology +def: "A molecular entity containing one or more atoms of an alkali metal." [] +subset: 3_STAR +synonym: "alkali metal molecular entities" RELATED [ChEBI] +is_a: CHEBI:33674 ! s-block molecular entity +relationship: has_part CHEBI:22314 ! alkali metal atom + +[Term] +id: CHEBI:33299 +name: alkaline earth molecular entity +namespace: chebi_ontology +def: "An alkaline earth molecular entity is a molecular entity containing one or more atoms of an alkaline earth metal." [] +subset: 3_STAR +synonym: "alkaline earth compounds" RELATED [ChEBI] +synonym: "alkaline earth molecular entities" RELATED [ChEBI] +synonym: "alkaline earth molecular entity" EXACT [ChEBI] +synonym: "alkaline-earth compounds" RELATED [ChEBI] +is_a: CHEBI:33674 ! s-block molecular entity +relationship: has_part CHEBI:22313 ! alkaline earth metal atom + +[Term] +id: CHEBI:33300 +name: pnictogen +namespace: chebi_ontology +def: "Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth." [] +subset: 3_STAR +synonym: "group 15 elements" RELATED [ChEBI] +synonym: "group V elements" RELATED [ChEBI] +synonym: "nitrogenoideos" RELATED [ChEBI] +synonym: "nitrogenoides" RELATED [ChEBI] +synonym: "pnictogene" RELATED [ChEBI] +synonym: "pnictogenes" RELATED [ChEBI] +synonym: "pnictogens" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33560 ! p-block element atom + +[Term] +id: CHEBI:33302 +name: pnictogen molecular entity +namespace: chebi_ontology +def: "A p-block molecular entity containing any pnictogen." [] +subset: 3_STAR +synonym: "pnictogen molecular entities" RELATED [ChEBI] +synonym: "pnictogen molecular entity" EXACT [ChEBI] +is_a: CHEBI:33675 ! p-block molecular entity +relationship: has_part CHEBI:33300 ! pnictogen +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33303 +name: chalcogen +namespace: chebi_ontology +def: "Any p-block element belonging to the group 16 family of the periodic table." [] +subset: 3_STAR +synonym: "anfigeno" RELATED [ChEBI] +synonym: "anfigenos" RELATED [ChEBI] +synonym: "calcogeno" RELATED [ChEBI] +synonym: "calcogenos" RELATED [ChEBI] +synonym: "chalcogen" EXACT IUPAC_NAME [IUPAC] +synonym: "chalcogene" RELATED [ChEBI] +synonym: "chalcogenes" RELATED [ChEBI] +synonym: "chalcogens" EXACT IUPAC_NAME [IUPAC] +synonym: "Chalkogen" RELATED [ChEBI] +synonym: "Chalkogene" RELATED [ChEBI] +synonym: "group 16 elements" RELATED [ChEBI] +synonym: "group VI elements" RELATED [ChEBI] +xref: PMID:17084588 "Europe PMC" +is_a: CHEBI:33560 ! p-block element atom + +[Term] +id: CHEBI:33304 +name: chalcogen molecular entity +namespace: chebi_ontology +def: "Any p-block molecular entity containing a chalcogen." [] +subset: 3_STAR +synonym: "chalcogen compounds" RELATED [ChEBI] +synonym: "chalcogen molecular entities" RELATED [ChEBI] +synonym: "chalcogen molecular entity" EXACT [ChEBI] +is_a: CHEBI:33675 ! p-block molecular entity +relationship: has_part CHEBI:33303 ! chalcogen +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33305 +name: tellurium molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "tellurium compounds" RELATED [ChEBI] +synonym: "tellurium molecular entities" RELATED [ChEBI] +synonym: "tellurium molecular entity" EXACT [ChEBI] +is_a: CHEBI:33304 ! chalcogen molecular entity +relationship: has_part CHEBI:30452 ! tellurium atom + +[Term] +id: CHEBI:33306 +name: carbon group element atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "carbon group element" RELATED [ChEBI] +synonym: "carbon group elements" RELATED [ChEBI] +synonym: "carbonoides" RELATED [ChEBI] +synonym: "cristallogene" RELATED [ChEBI] +synonym: "cristallogenes" RELATED [ChEBI] +synonym: "group 14 elements" EXACT IUPAC_NAME [IUPAC] +synonym: "group IV elements" RELATED [ChEBI] +is_a: CHEBI:33560 ! p-block element atom + +[Term] +id: CHEBI:33308 +name: carboxylic ester +namespace: chebi_ontology +alt_id: CHEBI:13204 +alt_id: CHEBI:23028 +alt_id: CHEBI:3408 +def: "An ester of a carboxylic acid, R(1)C(=O)OR(2), where R(1) = H or organyl and R(2) = organyl." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "43.990" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[*]C(=O)O[*]" RELATED SMILES [ChEBI] +synonym: "a carboxylic ester" RELATED [UniProt] +synonym: "carboxylic acid esters" RELATED [ChEBI] +synonym: "Carboxylic ester" EXACT [KEGG_COMPOUND] +synonym: "carboxylic esters" EXACT IUPAC_NAME [IUPAC] +synonym: "CO2R2" RELATED FORMULA [ChEBI] +xref: KEGG:C02391 +xref: Wikipedia:Ester +is_a: CHEBI:35701 ! ester +is_a: CHEBI:36586 ! carbonyl compound + +[Term] +id: CHEBI:33318 +name: main group element atom +namespace: chebi_ontology +def: "An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table." [] +subset: 3_STAR +synonym: "Hauptgruppenelement" RELATED [ChEBI] +synonym: "Hauptgruppenelemente" RELATED [ChEBI] +synonym: "main group element" RELATED [ChEBI] +synonym: "main group elements" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33250 ! atom + +[Term] +id: CHEBI:33319 +name: lanthanoid atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "lanthanide" RELATED [ChEBI] +synonym: "lanthanides" RELATED [ChEBI] +synonym: "Lanthanoid" RELATED [ChEBI] +synonym: "lanthanoid" RELATED [ChEBI] +synonym: "Lanthanoide" RELATED [ChEBI] +synonym: "Lanthanoidengruppe" RELATED [ChEBI] +synonym: "Lanthanoidenreiche" RELATED [ChEBI] +synonym: "lanthanoids" EXACT IUPAC_NAME [IUPAC] +synonym: "Ln" RELATED [ChEBI] +is_a: CHEBI:33321 ! rare earth metal atom + +[Term] +id: CHEBI:33321 +name: rare earth metal atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "rare earth metal" RELATED [ChEBI] +synonym: "rare earth metals" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:27081 ! transition element atom + +[Term] +id: CHEBI:33340 +name: zinc group element atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "group 12 elements" EXACT IUPAC_NAME [IUPAC] +synonym: "zinc group element" RELATED [ChEBI] +synonym: "zinc group elements" RELATED [ChEBI] +is_a: CHEBI:33561 ! d-block element atom + +[Term] +id: CHEBI:33341 +name: titanium atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "22Ti" RELATED [IUPAC] +synonym: "47.86700" RELATED MASS [ChEBI] +synonym: "47.948" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[Ti]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/Ti" RELATED InChI [ChEBI] +synonym: "RTAQQCXQSZGOHL-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Ti" RELATED [IUPAC] +synonym: "Ti" RELATED FORMULA [ChEBI] +synonym: "Titan" RELATED [ChEBI] +synonym: "titane" RELATED [ChEBI] +synonym: "titanio" RELATED [ChEBI] +synonym: "titanium" EXACT IUPAC_NAME [IUPAC] +synonym: "titanium" RELATED [ChEBI] +xref: CAS:7440-32-6 "ChemIDplus" +xref: WebElements:Ti +is_a: CHEBI:33345 ! titanium group element atom + +[Term] +id: CHEBI:33345 +name: titanium group element atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "group 4 elements" EXACT IUPAC_NAME [IUPAC] +synonym: "titanium group element" RELATED [ChEBI] +synonym: "titanium group elements" RELATED [ChEBI] +is_a: CHEBI:33561 ! d-block element atom + +[Term] +id: CHEBI:33350 +name: chromium group element atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "chromium group element" RELATED [ChEBI] +synonym: "chromium group elements" RELATED [ChEBI] +synonym: "group 6 elements" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33561 ! d-block element atom + +[Term] +id: CHEBI:33352 +name: manganese group element atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "group 7 elements" EXACT IUPAC_NAME [IUPAC] +synonym: "manganese group element" RELATED [ChEBI] +synonym: "manganese group elements" RELATED [ChEBI] +is_a: CHEBI:33561 ! d-block element atom + +[Term] +id: CHEBI:33356 +name: iron group element atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "group 8 elements" EXACT IUPAC_NAME [IUPAC] +synonym: "iron group element" RELATED [ChEBI] +synonym: "iron group elements" RELATED [ChEBI] +is_a: CHEBI:33561 ! d-block element atom + +[Term] +id: CHEBI:33362 +name: nickel group element atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "group 10 elements" EXACT IUPAC_NAME [IUPAC] +synonym: "nickel group element" RELATED [ChEBI] +synonym: "nickel group elements" RELATED [ChEBI] +is_a: CHEBI:33561 ! d-block element atom + +[Term] +id: CHEBI:33364 +name: platinum +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "194.965" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "195.07800" RELATED MASS [ChEBI] +synonym: "78Pt" RELATED [IUPAC] +synonym: "[Pt]" RELATED SMILES [ChEBI] +synonym: "BASFCYQUMIYNBI-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/Pt" RELATED InChI [ChEBI] +synonym: "Platin" RELATED [ChEBI] +synonym: "platine" RELATED [ChEBI] +synonym: "platino" RELATED [ChEBI] +synonym: "platinum" EXACT IUPAC_NAME [IUPAC] +synonym: "Pt" RELATED FORMULA [ChEBI] +synonym: "Pt" RELATED [IUPAC] +xref: CAS:7440-06-4 "ChemIDplus" +xref: WebElements:Pt +is_a: CHEBI:33362 ! nickel group element atom +is_a: CHEBI:33365 ! platinum group metal atom + +[Term] +id: CHEBI:33365 +name: platinum group metal atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "PGM" RELATED [ChEBI] +synonym: "Platinmetalle" RELATED [ChEBI] +synonym: "platinoid" RELATED [ChEBI] +synonym: "Platinoide" RELATED [ChEBI] +synonym: "platinum group metal" RELATED [ChEBI] +synonym: "platinum group metals" RELATED [ChEBI] +synonym: "platinum metals" RELATED [ChEBI] +is_a: CHEBI:27081 ! transition element atom + +[Term] +id: CHEBI:33366 +name: copper group element atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "coinage metals" RELATED [ChEBI] +synonym: "copper group element" RELATED [ChEBI] +synonym: "copper group elements" RELATED [ChEBI] +synonym: "group 11 elements" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33561 ! d-block element atom + +[Term] +id: CHEBI:33369 +name: cerium +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "139.905" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "140.11600" RELATED MASS [ChEBI] +synonym: "58Ce" RELATED [IUPAC] +synonym: "[Ce]" RELATED SMILES [ChEBI] +synonym: "Ce" RELATED FORMULA [ChEBI] +synonym: "Ce" RELATED [IUPAC] +synonym: "Cer" RELATED [ChEBI] +synonym: "cerio" RELATED [ChEBI] +synonym: "cerium" EXACT IUPAC_NAME [IUPAC] +synonym: "cerium" EXACT [ChEBI] +synonym: "GWXLDORMOJMVQZ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/Ce" RELATED InChI [ChEBI] +synonym: "Zer" RELATED [ChEBI] +xref: CAS:7440-45-1 "NIST Chemistry WebBook" +xref: Gmelin:16275 "Gmelin" +xref: WebElements:Ce +is_a: CHEBI:33319 ! lanthanoid atom +is_a: CHEBI:33562 ! f-block element atom + +[Term] +id: CHEBI:33384 +name: L-serine zwitterion +namespace: chebi_ontology +def: "A serine zwitterion obtained by transfer of a proton from the carboxy to the amino group of L-serine." [] +subset: 3_STAR +synonym: "(2S)-2-ammonio-3-hydroxypropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "105.043" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "105.09262" RELATED MASS [ChEBI] +synonym: "[NH3+][C@@H](CO)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C3H7NO3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-serine" RELATED [UniProt] +synonym: "L-serine zwitterion" EXACT [IUPAC] +synonym: "MTCFGRXMJLQNBG-REOHCLBHSA-N" RELATED InChIKey [ChEBI] +xref: MetaCyc:SER +is_a: CHEBI:35243 ! serine zwitterion +relationship: is_enantiomer_of CHEBI:35247 ! D-serine zwitterion +relationship: is_tautomer_of CHEBI:17115 ! L-serine + +[Term] +id: CHEBI:33402 +name: sulfur oxoacid +namespace: chebi_ontology +subset: 3_STAR +synonym: "oxoacids of sulfur" RELATED [ChEBI] +synonym: "sulfur oxoacids" RELATED [ChEBI] +is_a: CHEBI:26835 ! sulfur molecular entity +is_a: CHEBI:33484 ! chalcogen oxoacid + +[Term] +id: CHEBI:33405 +name: hydracid +namespace: chebi_ontology +def: "A hydracid is a compound which contains hydrogen that is not bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons)." [] +subset: 3_STAR +synonym: "hydracid" EXACT IUPAC_NAME [IUPAC] +synonym: "hydracids" RELATED [ChEBI] +is_a: CHEBI:33608 ! hydrogen molecular entity +relationship: has_role CHEBI:39141 ! Bronsted acid + +[Term] +id: CHEBI:33408 +name: pnictogen oxoacid +namespace: chebi_ontology +subset: 3_STAR +synonym: "pnictogen oxoacids" RELATED [ChEBI] +is_a: CHEBI:24833 ! oxoacid +is_a: CHEBI:33302 ! pnictogen molecular entity + +[Term] +id: CHEBI:33424 +name: sulfur oxoacid derivative +namespace: chebi_ontology +subset: 3_STAR +synonym: "sulfur oxoacid derivative" EXACT [ChEBI] +synonym: "sulfur oxoacid derivatives" RELATED [ChEBI] +is_a: CHEBI:26835 ! sulfur molecular entity +is_a: CHEBI:33241 ! oxoacid derivative + +[Term] +id: CHEBI:33425 +name: halogen oxoacid +namespace: chebi_ontology +subset: 3_STAR +synonym: "halogen oxoacid" EXACT [ChEBI] +synonym: "halogen oxoacids" RELATED [ChEBI] +is_a: CHEBI:24471 ! halogen molecular entity +is_a: CHEBI:24833 ! oxoacid + +[Term] +id: CHEBI:33426 +name: chlorine oxoacid +namespace: chebi_ontology +subset: 3_STAR +synonym: "chlorine oxoacid" EXACT [ChEBI] +synonym: "chlorine oxoacids" RELATED [ChEBI] +is_a: CHEBI:23117 ! chlorine molecular entity +is_a: CHEBI:33425 ! halogen oxoacid +relationship: is_conjugate_acid_of CHEBI:33437 ! chlorine oxoanion + +[Term] +id: CHEBI:33429 +name: monoatomic monoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "0.00000" RELATED MASS [ChEBI] +synonym: "[*-]" RELATED SMILES [ChEBI] +synonym: "monoatomic monoanions" RELATED [ChEBI] +is_a: CHEBI:23905 ! monoatomic anion +is_a: CHEBI:36830 ! monoanion + +[Term] +id: CHEBI:33431 +name: elemental chlorine +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:23117 ! chlorine molecular entity +is_a: CHEBI:33434 ! elemental halogen + +[Term] +id: CHEBI:33432 +name: monoatomic chlorine +namespace: chebi_ontology +subset: 3_STAR +synonym: "atomic chlorine" RELATED [ChEBI] +synonym: "Cl" RELATED FORMULA [ChEBI] +is_a: CHEBI:33431 ! elemental chlorine +is_a: CHEBI:33433 ! monoatomic halogen + +[Term] +id: CHEBI:33433 +name: monoatomic halogen +namespace: chebi_ontology +subset: 3_STAR +synonym: "monoatomic halogens" RELATED [ChEBI] +is_a: CHEBI:33238 ! monoatomic entity + +[Term] +id: CHEBI:33434 +name: elemental halogen +namespace: chebi_ontology +subset: 3_STAR +synonym: "elemental halogen" EXACT [ChEBI] +synonym: "elemental halogens" RELATED [ChEBI] +is_a: CHEBI:33259 ! elemental molecular entity + +[Term] +id: CHEBI:33437 +name: chlorine oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "chlorine oxoanion" EXACT [ChEBI] +synonym: "chlorine oxoanions" RELATED [ChEBI] +is_a: CHEBI:23117 ! chlorine molecular entity +is_a: CHEBI:33443 ! halogen oxoanion +relationship: is_conjugate_base_of CHEBI:33426 ! chlorine oxoacid + +[Term] +id: CHEBI:33443 +name: halogen oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "halogen oxoanion" EXACT [ChEBI] +synonym: "halogen oxoanions" RELATED [ChEBI] +is_a: CHEBI:24471 ! halogen molecular entity +is_a: CHEBI:24834 ! inorganic anion +is_a: CHEBI:35406 ! oxoanion + +[Term] +id: CHEBI:33447 +name: phospho sugar +namespace: chebi_ontology +alt_id: CHEBI:15132 +alt_id: CHEBI:25406 +alt_id: CHEBI:26086 +alt_id: CHEBI:9320 +def: "Any monosaccharide containing an alcoholic hydroxy group esterified with phosphoric acid." [] +subset: 3_STAR +synonym: "monosaccharide phosphates" RELATED [ChEBI] +synonym: "phospho sugar" EXACT [ChEBI] +synonym: "phospho sugars" RELATED [ChEBI] +synonym: "phosphorylated sugar" RELATED [ChEBI] +synonym: "phosphorylated sugars" RELATED [ChEBI] +synonym: "phosphosugar" RELATED [ChEBI] +synonym: "phosphosugars" RELATED [ChEBI] +xref: KEGG:C00934 +xref: PMID:18186488 "Europe PMC" +is_a: CHEBI:26816 ! carbohydrate phosphate +is_a: CHEBI:63367 ! monosaccharide derivative + +[Term] +id: CHEBI:33452 +name: benzylic group +namespace: chebi_ontology +def: "Arylmethyl groups and derivatives formed by substitution: ArCR2-." [] +subset: 3_STAR +synonym: "benzylic group" EXACT [IUPAC] +synonym: "benzylic groups" EXACT IUPAC_NAME [IUPAC] +synonym: "benzylic groups" RELATED [ChEBI] +synonym: "groupe benzylique" RELATED [IUPAC] +is_a: CHEBI:33249 ! organyl group + +[Term] +id: CHEBI:33455 +name: nitrogen oxoacid +namespace: chebi_ontology +subset: 3_STAR +synonym: "nitrogen oxoacids" RELATED [ChEBI] +synonym: "oxoacids of nitrogen" RELATED [ChEBI] +is_a: CHEBI:33408 ! pnictogen oxoacid +is_a: CHEBI:51143 ! nitrogen molecular entity + +[Term] +id: CHEBI:33457 +name: phosphorus oxoacid +namespace: chebi_ontology +def: "A pnictogen oxoacid which contains phosphorus and oxygen, at least one hydrogen atom bound to oxygen, and forms an ion by the loss of one or more protons." [] +subset: 3_STAR +synonym: "oxoacids of phosphorus" RELATED [ChEBI] +synonym: "Oxosaeure des Phosphors" RELATED [ChEBI] +synonym: "phosphorus oxoacid" EXACT [ChEBI] +synonym: "phosphorus oxoacids" RELATED [ChEBI] +is_a: CHEBI:33408 ! pnictogen oxoacid +is_a: CHEBI:36360 ! phosphorus oxoacids and derivatives + +[Term] +id: CHEBI:33458 +name: nitrogen oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "nitrogen oxoanion" EXACT [ChEBI] +synonym: "nitrogen oxoanions" RELATED [ChEBI] +synonym: "oxoanions of nitrogen" RELATED [ChEBI] +is_a: CHEBI:33459 ! pnictogen oxoanion +is_a: CHEBI:51143 ! nitrogen molecular entity + +[Term] +id: CHEBI:33459 +name: pnictogen oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "pnictogen oxoanion" EXACT [ChEBI] +synonym: "pnictogen oxoanions" RELATED [ChEBI] +is_a: CHEBI:33302 ! pnictogen molecular entity +is_a: CHEBI:35406 ! oxoanion + +[Term] +id: CHEBI:33461 +name: phosphorus oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "oxoanions of phosphorus" RELATED [ChEBI] +synonym: "phosphorus oxoanion" EXACT [ChEBI] +synonym: "phosphorus oxoanions" RELATED [ChEBI] +is_a: CHEBI:24834 ! inorganic anion +is_a: CHEBI:26082 ! phosphorus molecular entity +is_a: CHEBI:33459 ! pnictogen oxoanion + +[Term] +id: CHEBI:33462 +name: phosphonate(1-) +namespace: chebi_ontology +def: "A monovalent inorganic anion obtained by deprotonation of one of the two OH groups in phosphonic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "80.974" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "80.98784" RELATED MASS [ChEBI] +synonym: "[H]OP([H])([O-])=O" RELATED SMILES [ChEBI] +synonym: "[PHO2(OH)](-)" RELATED [IUPAC] +synonym: "ABLZXFCXXLZCGV-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "H2O3P" RELATED FORMULA [ChEBI] +synonym: "hydridohydroxidodioxidophosphate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogen phosphonate" RELATED [IUPAC] +synonym: "hydrogenphosphonate" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H3O3P/c1-4(2)3/h4H,(H2,1,2,3)/p-1" RELATED InChI [ChEBI] +is_a: CHEBI:33461 ! phosphorus oxoanion +is_a: CHEBI:79389 ! monovalent inorganic anion +relationship: is_conjugate_acid_of CHEBI:16215 ! phosphonate(2-) +relationship: is_conjugate_base_of CHEBI:44976 ! phosphonic acid + +[Term] +id: CHEBI:33482 +name: sulfur oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "oxoanions of sulfur" RELATED [ChEBI] +synonym: "sulfur oxoanion" EXACT [ChEBI] +synonym: "sulfur oxoanions" RELATED [ChEBI] +is_a: CHEBI:26835 ! sulfur molecular entity +is_a: CHEBI:33485 ! chalcogen oxoanion + +[Term] +id: CHEBI:33484 +name: chalcogen oxoacid +namespace: chebi_ontology +subset: 3_STAR +synonym: "chalcogen oxoacid" EXACT [ChEBI] +synonym: "chalcogen oxoacids" RELATED [ChEBI] +is_a: CHEBI:24833 ! oxoacid + +[Term] +id: CHEBI:33485 +name: chalcogen oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "chalcogen oxoanion" EXACT [ChEBI] +synonym: "chalcogen oxoanions" RELATED [ChEBI] +is_a: CHEBI:35406 ! oxoanion + +[Term] +id: CHEBI:33488 +name: selenium oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "oxoanions of selenium" RELATED [ChEBI] +synonym: "selenium oxoanion" EXACT [ChEBI] +synonym: "selenium oxoanions" RELATED [ChEBI] +is_a: CHEBI:26628 ! selenium molecular entity +is_a: CHEBI:33485 ! chalcogen oxoanion + +[Term] +id: CHEBI:33489 +name: selenium oxoacid +namespace: chebi_ontology +subset: 3_STAR +synonym: "oxoacids of selenium" RELATED [ChEBI] +synonym: "selenium oxoacid" EXACT [ChEBI] +synonym: "selenium oxoacids" RELATED [ChEBI] +is_a: CHEBI:26628 ! selenium molecular entity +is_a: CHEBI:33484 ! chalcogen oxoacid + +[Term] +id: CHEBI:33497 +name: transition element molecular entity +namespace: chebi_ontology +def: "A molecular entity containing one or more atoms of a transition element." [] +subset: 3_STAR +synonym: "transition element molecular entities" RELATED [ChEBI] +synonym: "transition metal molecular entity" RELATED [ChEBI] +is_a: CHEBI:23367 ! molecular entity +relationship: has_part CHEBI:27081 ! transition element atom + +[Term] +id: CHEBI:33504 +name: alkali metal cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "alkali metal cations" RELATED [ChEBI] +is_a: CHEBI:25213 ! metal cation + +[Term] +id: CHEBI:33508 +name: glyceric acid +namespace: chebi_ontology +alt_id: CHEBI:24348 +alt_id: CHEBI:24349 +alt_id: CHEBI:33846 +def: "A trionic acid that consists of propionic acid substituted at positions 2 and 3 by hydroxy groups." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "106.027" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "106.07734" RELATED MASS [ChEBI] +synonym: "2,3-dihydroxypropanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "2,3-dihydroxypropionic acid" RELATED [ChEBI] +synonym: "C3H6O4" RELATED FORMULA [ChEBI] +synonym: "glyceric acid" EXACT [ChemIDplus] +synonym: "Gro" RELATED [ChEBI] +synonym: "InChI=1S/C3H6O4/c4-1-2(5)3(6)7/h2,4-5H,1H2,(H,6,7)" RELATED InChI [ChEBI] +synonym: "OCC(O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "RBNPOMFGQQGHHO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1721417 "Beilstein" +xref: CAS:473-81-4 "ChemIDplus" +xref: Gmelin:164608 "Gmelin" +xref: PMID:14957916 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:21071844 "Europe PMC" +xref: PMID:21701101 "Europe PMC" +xref: PMID:21852749 "Europe PMC" +xref: PMID:22226201 "Europe PMC" +xref: Reaxys:1721417 "Reaxys" +xref: Wikipedia:Glyceric_acid +is_a: CHEBI:33754 ! trionic acid +relationship: has_functional_parent CHEBI:30768 ! propionic acid +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:33871 ! glycerate + +[Term] +id: CHEBI:33515 +name: transition element cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "transition element cations" RELATED [ChEBI] +synonym: "transition metal cation" RELATED [ChEBI] +is_a: CHEBI:25213 ! metal cation + +[Term] +id: CHEBI:33519 +name: tellurium oxoacid +namespace: chebi_ontology +subset: 3_STAR +synonym: "oxoacids of tellurium" RELATED [ChEBI] +synonym: "tellurium oxoacid" EXACT [ChEBI] +synonym: "tellurium oxoacids" RELATED [ChEBI] +is_a: CHEBI:33305 ! tellurium molecular entity +is_a: CHEBI:33484 ! chalcogen oxoacid + +[Term] +id: CHEBI:33520 +name: tellurium oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "oxoanions of tellurium" RELATED [ChEBI] +synonym: "tellurium oxoanion" EXACT [ChEBI] +synonym: "tellurium oxoanions" RELATED [ChEBI] +is_a: CHEBI:33305 ! tellurium molecular entity +is_a: CHEBI:33485 ! chalcogen oxoanion + +[Term] +id: CHEBI:33521 +name: metal atom +namespace: chebi_ontology +alt_id: CHEBI:25217 +alt_id: CHEBI:6788 +def: "An atom of an element that exhibits typical metallic properties, being typically shiny, with high electrical and thermal conductivity." [] +subset: 3_STAR +synonym: "elemental metal" RELATED [ChEBI] +synonym: "elemental metals" RELATED [ChEBI] +synonym: "metal element" RELATED [ChEBI] +synonym: "metal elements" RELATED [ChEBI] +synonym: "metals" RELATED [ChEBI] +xref: KEGG:C00050 +xref: PMID:21784043 "Europe PMC" +xref: Wikipedia:Metal +is_a: CHEBI:33250 ! atom + +[Term] +id: CHEBI:33522 +name: hydrogentellurite +namespace: chebi_ontology +def: "A monovalent inorganic anion obtained by removal of a proton from H2TeO3" [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "176.60614" RELATED MASS [ChEBI] +synonym: "178.899" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[H]O[Te]([O-])=O" RELATED SMILES [ChEBI] +synonym: "[TeO2(OH)](-)" RELATED [IUPAC] +synonym: "HO3Te" RELATED FORMULA [ChEBI] +synonym: "HTeO3(-)" RELATED [IUPAC] +synonym: "hydroxidodioxidotellurate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H2O3Te/c1-4(2)3/h(H2,1,2,3)/p-1" RELATED InChI [ChEBI] +synonym: "SITVSCPRJNYAGV-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Gmelin:323330 "Gmelin" +is_a: CHEBI:33520 ! tellurium oxoanion +is_a: CHEBI:79389 ! monovalent inorganic anion +relationship: is_conjugate_acid_of CHEBI:30477 ! tellurite +relationship: is_conjugate_base_of CHEBI:30465 ! tellurous acid + +[Term] +id: CHEBI:33529 +name: idonate +namespace: chebi_ontology +alt_id: CHEBI:24767 +alt_id: CHEBI:33528 +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "C5H11O7" RELATED FORMULA [ChEBI] +synonym: "idonates" RELATED [ChEBI] +is_a: CHEBI:33867 ! idonates +relationship: is_conjugate_base_of CHEBI:21337 ! idonic acid + +[Term] +id: CHEBI:33535 +name: sulfur hydride +namespace: chebi_ontology +subset: 3_STAR +synonym: "hydrides of sulfur" RELATED [ChEBI] +synonym: "sulfur hydride" EXACT [ChEBI] +synonym: "sulfur hydrides" RELATED [ChEBI] +synonym: "sulphur hydrides" RELATED [ChEBI] +is_a: CHEBI:26835 ! sulfur molecular entity +is_a: CHEBI:36902 ! chalcogen hydride + +[Term] +id: CHEBI:33540 +name: thiosulfuric acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "H2O3S2" RELATED FORMULA [ChEBI] +synonym: "sulfurothioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "thiosulfuric acid" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33402 ! sulfur oxoacid +relationship: is_conjugate_acid_of CHEBI:33541 ! thiosulfate(1-) + +[Term] +id: CHEBI:33541 +name: thiosulfate(1-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "HO3S2" RELATED FORMULA [ChEBI] +synonym: "HS2O3(-)" RELATED [IUPAC] +synonym: "hydrogen sulfurothioate" EXACT IUPAC_NAME [IUPAC] +xref: KEGG:C00320 +is_a: CHEBI:33482 ! sulfur oxoanion +relationship: is_conjugate_acid_of CHEBI:16094 ! thiosulfate(2-) +relationship: is_conjugate_base_of CHEBI:33540 ! thiosulfuric acid + +[Term] +id: CHEBI:33543 +name: sulfonate +namespace: chebi_ontology +def: "The sulfur oxoanion formed by deprotonation of sulfonic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "80.965" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "81.07214" RELATED MASS [ChEBI] +synonym: "[H]S([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "[SHO3](-)" RELATED [IUPAC] +synonym: "BDHFUVZGWQCTTF-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "HO3S" RELATED FORMULA [ChEBI] +synonym: "hydridotrioxidosulfate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H2O3S/c1-4(2)3/h4H,(H,1,2,3)/p-1" RELATED InChI [ChEBI] +synonym: "SHO3(-)" RELATED [IUPAC] +synonym: "sulfonates" RELATED [ChEBI] +xref: Gmelin:971569 "Gmelin" +is_a: CHEBI:33482 ! sulfur oxoanion +relationship: is_conjugate_base_of CHEBI:29214 ! sulfonic acid + +[Term] +id: CHEBI:33549 +name: uronate +namespace: chebi_ontology +alt_id: CHEBI:27250 +alt_id: CHEBI:27251 +subset: 3_STAR +synonym: "uronate" EXACT [ChEBI] +synonym: "uronates" RELATED [ChEBI] +is_a: CHEBI:33721 ! carbohydrate acid anion +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:27252 ! uronic acid + +[Term] +id: CHEBI:33551 +name: organosulfonic acid +namespace: chebi_ontology +def: "An organic derivative of sulfonic acid in which the sulfo group is linked directly to carbon." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "80.965" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "81.07100" RELATED MASS [ChEBI] +synonym: "HO3SR" RELATED FORMULA [ChEBI] +synonym: "organosulfonic acids" RELATED [ChEBI] +synonym: "OS([*])(=O)=O" RELATED SMILES [ChEBI] +synonym: "sulfonic acids" RELATED [ChEBI] +is_a: CHEBI:33261 ! organosulfur compound +is_a: CHEBI:33552 ! sulfonic acid derivative +relationship: has_part CHEBI:29922 ! sulfo group +relationship: has_part CHEBI:33249 ! organyl group +relationship: is_conjugate_acid_of CHEBI:33554 ! organosulfonate oxoanion + +[Term] +id: CHEBI:33552 +name: sulfonic acid derivative +namespace: chebi_ontology +subset: 3_STAR +synonym: "derivatives of sulfonic acid" RELATED [ChEBI] +synonym: "sulfonic acid derivative" EXACT [ChEBI] +synonym: "sulfonic acid derivatives" RELATED [ChEBI] +is_a: CHEBI:33424 ! sulfur oxoacid derivative +relationship: has_functional_parent CHEBI:29214 ! sulfonic acid + +[Term] +id: CHEBI:33554 +name: organosulfonate oxoanion +namespace: chebi_ontology +def: "An organic anion obtained by deprotonation of the sufonate group(s) of any organosulfonic acid." [] +subset: 3_STAR +synonym: "*S([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "79.957" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "80.064" RELATED MASS [ChEBI] +synonym: "O3SR" RELATED FORMULA [ChEBI] +synonym: "organosulfonate" RELATED [ChEBI] +synonym: "organosulfonate oxoanions" RELATED [ChEBI] +synonym: "organosulfonates" RELATED [ChEBI] +is_a: CHEBI:25696 ! organic anion +relationship: has_functional_parent CHEBI:33543 ! sulfonate +relationship: is_conjugate_base_of CHEBI:33551 ! organosulfonic acid + +[Term] +id: CHEBI:33558 +name: alpha-amino-acid anion +namespace: chebi_ontology +def: "An amino-acid anion obtained by deprotonation of any alpha-amino acid." [] +subset: 3_STAR +synonym: "alpha-amino acid anions" RELATED [ChEBI] +synonym: "alpha-amino-acid anion" EXACT [ChEBI] +synonym: "alpha-amino-acid anions" RELATED [ChEBI] +is_a: CHEBI:37022 ! amino-acid anion +relationship: is_conjugate_base_of CHEBI:33704 ! alpha-amino acid + +[Term] +id: CHEBI:33559 +name: s-block element atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "s-block element" RELATED [ChEBI] +synonym: "s-block elements" RELATED [ChEBI] +is_a: CHEBI:33250 ! atom + +[Term] +id: CHEBI:33560 +name: p-block element atom +namespace: chebi_ontology +def: "Any main group element atom belonging to the p-block of the periodic table." [] +subset: 3_STAR +synonym: "p-block element" RELATED [ChEBI] +synonym: "p-block elements" RELATED [ChEBI] +is_a: CHEBI:33318 ! main group element atom + +[Term] +id: CHEBI:33561 +name: d-block element atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "d-block element" RELATED [ChEBI] +synonym: "d-block elements" RELATED [ChEBI] +is_a: CHEBI:27081 ! transition element atom + +[Term] +id: CHEBI:33562 +name: f-block element atom +namespace: chebi_ontology +subset: 3_STAR +synonym: "f-block element" RELATED [ChEBI] +synonym: "f-block elements" RELATED [ChEBI] +is_a: CHEBI:27081 ! transition element atom + +[Term] +id: CHEBI:33566 +name: catechols +namespace: chebi_ontology +alt_id: CHEBI:134187 +alt_id: CHEBI:13628 +alt_id: CHEBI:18862 +def: "Any compound containing an o-diphenol component." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,2-benzenediols" RELATED [ChEBI] +synonym: "106.005" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "106.079" RELATED MASS [ChEBI] +synonym: "a catechol" RELATED [UniProt] +synonym: "benzene-1,2-diols" RELATED [ChEBI] +synonym: "C6H2O2R4" RELATED FORMULA [ChEBI] +synonym: "OC1=C(O)C(*)=C(*)C(*)=C1*" RELATED SMILES [ChEBI] +xref: KEGG:C15571 +is_a: CHEBI:33570 ! benzenediols + +[Term] +id: CHEBI:33567 +name: catecholamine +namespace: chebi_ontology +alt_id: CHEBI:23056 +alt_id: CHEBI:3468 +def: "4-(2-Aminoethyl)pyrocatechol [4-(2-aminoethyl)benzene-1,2-diol] and derivatives formed by substitution." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [KEGG_COMPOUND] +synonym: "151.063" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "151.163" RELATED MASS [KEGG_COMPOUND] +synonym: "C8H9NO2R2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Catecholamine" EXACT [KEGG_COMPOUND] +synonym: "catecholamines" EXACT IUPAC_NAME [IUPAC] +synonym: "catecholamines" RELATED [ChEBI] +xref: KEGG:C02012 +is_a: CHEBI:25375 ! monoamine molecular messenger +is_a: CHEBI:33566 ! catechols + +[Term] +id: CHEBI:33568 +name: adrenaline +namespace: chebi_ontology +def: "A catecholamine in which the aminoethyl side-chain is hydroxy-substituted at C-1 and methylated on nitrogen." [] +subset: 3_STAR +synonym: "(+-)-adrenaline" RELATED [IUPHAR] +synonym: "(+-)-epinephrine" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "183.090" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "183.20446" RELATED MASS [ChEBI] +synonym: "2-(methylamino)-1-(3,4-dihydroxyphenyl)ethanol" RELATED [ChemIDplus] +synonym: "4-[1-hydroxy-2-(methylamino)ethyl]benzene-1,2-diol" EXACT IUPAC_NAME [IUPAC] +synonym: "C9H13NO3" RELATED FORMULA [ChEBI] +synonym: "CNCC(O)c1ccc(O)c(O)c1" RELATED SMILES [ChEBI] +synonym: "dl-adrenaline" RELATED [ChemIDplus] +synonym: "epinephrine racemic" RELATED [ChemIDplus] +synonym: "InChI=1S/C9H13NO3/c1-10-5-9(13)6-2-3-7(11)8(12)4-6/h2-4,9-13H,5H2,1H3" RELATED InChI [ChEBI] +synonym: "racepinefrina" RELATED INN [ChemIDplus] +synonym: "racepinefrine" RELATED INN [ChemIDplus] +synonym: "racepinefrinum" RELATED INN [ChemIDplus] +synonym: "UCTWMZQNUQWSLP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:2212160 "ChemIDplus" +xref: CAS:329-65-7 "ChemIDplus" +xref: colombos:EPINEPHRINE +xref: Drug_Central:4508 "DrugCentral" +xref: Gmelin:51559 "Gmelin" +xref: LINCS:LSM-4958 +xref: PMID:10052027 "Europe PMC" +xref: PMID:24252294 "Europe PMC" +xref: PMID:24719616 "Europe PMC" +xref: Reaxys:2212160 "Reaxys" +is_a: CHEBI:33567 ! catecholamine +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:33569 +name: noradrenaline +namespace: chebi_ontology +def: "A catecholamine in which C-1 of the aminoethyl side-chain is hydroxy-substituted." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "169.074" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "169.17788" RELATED MASS [ChEBI] +synonym: "4-(2-amino-1-hydroxyethyl)benzene-1,2-diol" EXACT IUPAC_NAME [IUPAC] +synonym: "C8H11NO3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C8H11NO3/c9-4-8(12)5-1-2-6(10)7(11)3-5/h1-3,8,10-12H,4,9H2" RELATED InChI [ChEBI] +synonym: "NCC(O)c1ccc(O)c(O)c1" RELATED SMILES [ChEBI] +synonym: "noradrenalina" RELATED [ChEBI] +synonym: "norepinephrine" RELATED [ChEBI] +synonym: "SFLSHLFXELFNJZ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:2210994 "Beilstein" +xref: CAS:138-65-8 "NIST Chemistry WebBook" +xref: colombos:NOREPINEPHRINE +xref: Gmelin:863925 "Gmelin" +xref: LINCS:LSM-5181 +is_a: CHEBI:33567 ! catecholamine +relationship: has_role CHEBI:76967 ! human xenobiotic metabolite + +[Term] +id: CHEBI:33570 +name: benzenediols +namespace: chebi_ontology +alt_id: CHEBI:22705 +alt_id: CHEBI:22711 +subset: 3_STAR +is_a: CHEBI:33853 ! phenols + +[Term] +id: CHEBI:33575 +name: carboxylic acid +namespace: chebi_ontology +alt_id: CHEBI:13428 +alt_id: CHEBI:13627 +alt_id: CHEBI:23027 +def: "A carbon oxoacid acid carrying at least one -C(=O)OH group and having the structure RC(=O)OH, where R is any any monovalent functional group. Carboxylic acids are the most common type of organic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "44.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "45.01740" RELATED MASS [ChEBI] +synonym: "acide carboxylique" RELATED [IUPAC] +synonym: "acides carboxyliques" RELATED [IUPAC] +synonym: "acido carboxilico" RELATED [IUPAC] +synonym: "acidos carboxilicos" RELATED [IUPAC] +synonym: "Carbonsaeure" RELATED [ChEBI] +synonym: "Carbonsaeuren" RELATED [ChEBI] +synonym: "carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "carboxylic acids" EXACT IUPAC_NAME [IUPAC] +synonym: "CHO2R" RELATED FORMULA [ChEBI] +synonym: "Karbonsaeure" RELATED [ChEBI] +synonym: "OC([*])=O" RELATED SMILES [ChEBI] +synonym: "RC(=O)OH" RELATED [IUPAC] +xref: PMID:17147560 "Europe PMC" +xref: PMID:18433345 "Europe PMC" +xref: Wikipedia:Carboxylic_acid +is_a: CHEBI:35605 ! carbon oxoacid +is_a: CHEBI:36586 ! carbonyl compound +is_a: CHEBI:64709 ! organic acid +relationship: has_part CHEBI:46883 ! carboxy group +relationship: is_conjugate_acid_of CHEBI:29067 ! carboxylic acid anion +property_value: http://purl.obolibrary.org/obo/chebi/formula "CHO2R" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/mass "45.01740" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "44.998" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/smiles "OC([*])=O" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33576 +name: sulfur-containing carboxylic acid +namespace: chebi_ontology +def: "Any carboxylic acid having a sulfur substituent." [] +subset: 3_STAR +synonym: "S-containing carboxylic acid" RELATED [ChEBI] +synonym: "S-containing carboxylic acids" RELATED [ChEBI] +synonym: "sulfur-containing carboxylic acids" RELATED [ChEBI] +is_a: CHEBI:33261 ! organosulfur compound +is_a: CHEBI:33575 ! carboxylic acid + +[Term] +id: CHEBI:33579 +name: main group molecular entity +namespace: chebi_ontology +def: "A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table." [] +subset: 3_STAR +synonym: "main group compounds" RELATED [ChEBI] +synonym: "main group molecular entities" RELATED [ChEBI] +is_a: CHEBI:23367 ! molecular entity +relationship: has_part CHEBI:33318 ! main group element atom +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33582 +name: carbon group molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "carbon group molecular entities" RELATED [ChEBI] +synonym: "carbon group molecular entity" EXACT [ChEBI] +is_a: CHEBI:33675 ! p-block molecular entity +relationship: has_part CHEBI:33306 ! carbon group element atom +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33585 +name: lead molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "lead compounds" RELATED [ChEBI] +synonym: "lead molecular entities" RELATED [ChEBI] +synonym: "lead molecular entity" EXACT [ChEBI] +is_a: CHEBI:33582 ! carbon group molecular entity +relationship: has_part CHEBI:25016 ! lead atom + +[Term] +id: CHEBI:33595 +name: cyclic compound +namespace: chebi_ontology +def: "Any molecule that consists of a series of atoms joined together to form a ring." [] +subset: 3_STAR +synonym: "cyclic compounds" RELATED [ChEBI] +xref: Wikipedia:Cyclic_compound +is_a: CHEBI:25367 ! molecule +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33597 +name: homocyclic compound +namespace: chebi_ontology +def: "A cyclic compound having as ring members atoms of the same element only." [] +subset: 3_STAR +synonym: "homocyclic compound" EXACT IUPAC_NAME [IUPAC] +synonym: "homocyclic compounds" EXACT IUPAC_NAME [IUPAC] +synonym: "isocyclic compounds" RELATED [IUPAC] +is_a: CHEBI:33595 ! cyclic compound + +[Term] +id: CHEBI:33598 +name: carbocyclic compound +namespace: chebi_ontology +def: "A homocyclic compound in which all of the ring members are carbon atoms." [] +subset: 3_STAR +synonym: "carbocycle" RELATED [ChEBI] +synonym: "carbocyclic compound" EXACT IUPAC_NAME [IUPAC] +synonym: "carbocyclic compounds" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33597 ! homocyclic compound +is_a: CHEBI:33832 ! organic cyclic compound + +[Term] +id: CHEBI:33608 +name: hydrogen molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "hydrogen compounds" RELATED [ChEBI] +synonym: "hydrogen molecular entities" RELATED [ChEBI] +is_a: CHEBI:33674 ! s-block molecular entity +relationship: has_part CHEBI:49637 ! hydrogen atom +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33635 +name: polycyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "polycyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33595 ! cyclic compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33636 +name: bicyclic compound +namespace: chebi_ontology +def: "A molecule that features two fused rings." [] +subset: 3_STAR +synonym: "bicyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33595 ! cyclic compound + +[Term] +id: CHEBI:33637 +name: ortho-fused compound +namespace: chebi_ontology +def: "A polycyclic compound in which two rings have two, and only two, atoms in common. Such compounds have n common faces and 2n common atoms." [] +subset: 3_STAR +synonym: "ortho-fused compounds" RELATED [ChEBI] +synonym: "ortho-fused polycyclic compounds" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:35293 ! fused compound + +[Term] +id: CHEBI:33653 +name: aliphatic compound +namespace: chebi_ontology +def: "Any acyclic or cyclic, saturated or unsaturated carbon compound, excluding aromatic compounds." [] +subset: 3_STAR +synonym: "aliphatic compounds" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:33655 +name: aromatic compound +namespace: chebi_ontology +def: "A cyclically conjugated molecular entity with a stability (due to delocalization) significantly greater than that of a hypothetical localized structure (e.g. Kekule structure) is said to possess aromatic character." [] +subset: 3_STAR +synonym: "aromatic compounds" EXACT IUPAC_NAME [IUPAC] +synonym: "aromatic molecular entity" EXACT IUPAC_NAME [IUPAC] +synonym: "aromatics" RELATED [ChEBI] +synonym: "aromatische Verbindungen" RELATED [ChEBI] +is_a: CHEBI:33595 ! cyclic compound + +[Term] +id: CHEBI:33658 +name: arene +namespace: chebi_ontology +def: "Any monocyclic or polycyclic aromatic hydrocarbon." [] +subset: 3_STAR +synonym: "arene" EXACT IUPAC_NAME [IUPAC] +synonym: "arenes" EXACT IUPAC_NAME [IUPAC] +synonym: "aromatic hydrocarbons" RELATED [IUPAC] +is_a: CHEBI:33659 ! organic aromatic compound +is_a: CHEBI:33663 ! cyclic hydrocarbon + +[Term] +id: CHEBI:33659 +name: organic aromatic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic aromatic compounds" RELATED [ChEBI] +is_a: CHEBI:33655 ! aromatic compound +is_a: CHEBI:33832 ! organic cyclic compound + +[Term] +id: CHEBI:33661 +name: monocyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "monocyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33595 ! cyclic compound + +[Term] +id: CHEBI:33662 +name: annulene +namespace: chebi_ontology +def: "A mancude monocyclic hydrocarbon without side chains of the general formula CnHn (n is an even number) or CnHn+1 (n is an odd number). In systematic nomenclature an annulene with seven or more carbon atoms may be named [n]annulene, where n is the number of carbon atoms." [] +subset: 3_STAR +synonym: "annulene" EXACT IUPAC_NAME [IUPAC] +synonym: "annulenes" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33664 ! monocyclic hydrocarbon + +[Term] +id: CHEBI:33663 +name: cyclic hydrocarbon +namespace: chebi_ontology +subset: 3_STAR +synonym: "cyclic hydrocarbon" EXACT [ChEBI] +synonym: "cyclic hydrocarbons" RELATED [ChEBI] +is_a: CHEBI:24632 ! hydrocarbon +is_a: CHEBI:33598 ! carbocyclic compound + +[Term] +id: CHEBI:33664 +name: monocyclic hydrocarbon +namespace: chebi_ontology +subset: 3_STAR +synonym: "monocyclic hydrocarbon" EXACT [ChEBI] +synonym: "monocyclic hydrocarbons" EXACT IUPAC_NAME [IUPAC] +synonym: "monocyclic hydrocarbons" RELATED [ChEBI] +is_a: CHEBI:33663 ! cyclic hydrocarbon + +[Term] +id: CHEBI:33666 +name: polycyclic hydrocarbon +namespace: chebi_ontology +subset: 3_STAR +synonym: "polycyclic hydrocarbon" EXACT IUPAC_NAME [IUPAC] +synonym: "polycyclic hydrocarbons" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33663 ! cyclic hydrocarbon +is_a: CHEBI:35294 ! carbopolycyclic compound + +[Term] +id: CHEBI:33670 +name: heteromonocyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "heteromonocyclic compound" EXACT IUPAC_NAME [IUPAC] +synonym: "heteromonocyclic compounds" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33661 ! monocyclic compound +is_a: CHEBI:5686 ! heterocyclic compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33671 +name: heteropolycyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "heteropolycyclic compounds" EXACT IUPAC_NAME [IUPAC] +synonym: "polyheterocyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33635 ! polycyclic compound +is_a: CHEBI:5686 ! heterocyclic compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33672 +name: heterobicyclic compound +namespace: chebi_ontology +def: "A bicyclic compound in which at least one of the rings contains at least one skeletal heteroatom." [] +subset: 3_STAR +synonym: "heterobicyclic compounds" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33636 ! bicyclic compound +is_a: CHEBI:5686 ! heterocyclic compound + +[Term] +id: CHEBI:33673 +name: zinc group molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "zinc group molecular entities" RELATED [ChEBI] +is_a: CHEBI:33676 ! d-block molecular entity +relationship: has_part CHEBI:33340 ! zinc group element atom + +[Term] +id: CHEBI:33674 +name: s-block molecular entity +namespace: chebi_ontology +def: "An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element." [] +subset: 3_STAR +synonym: "s-block compounds" RELATED [ChEBI] +synonym: "s-block molecular entities" RELATED [ChEBI] +synonym: "s-block molecular entity" EXACT [ChEBI] +is_a: CHEBI:33579 ! main group molecular entity +relationship: has_part CHEBI:33559 ! s-block element atom +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33675 +name: p-block molecular entity +namespace: chebi_ontology +def: "A main group molecular entity that contains one or more atoms of a p-block element." [] +subset: 3_STAR +synonym: "p-block compounds" RELATED [ChEBI] +synonym: "p-block molecular entities" RELATED [ChEBI] +synonym: "p-block molecular entitiy" RELATED [ChEBI] +is_a: CHEBI:33579 ! main group molecular entity +relationship: has_part CHEBI:33560 ! p-block element atom +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33676 +name: d-block molecular entity +namespace: chebi_ontology +def: "A d-block molecular entity is a molecular entity containing one or more atoms of a d-block element." [] +subset: 3_STAR +synonym: "d-block compounds" RELATED [ChEBI] +synonym: "d-block molecular entities" RELATED [ChEBI] +synonym: "d-block molecular entity" EXACT [ChEBI] +is_a: CHEBI:33497 ! transition element molecular entity +relationship: has_part CHEBI:33561 ! d-block element atom + +[Term] +id: CHEBI:33677 +name: f-block molecular entity +namespace: chebi_ontology +def: "A molecular entity containing one or more atoms of an f-block element." [] +subset: 3_STAR +synonym: "f-block compounds" RELATED [ChEBI] +synonym: "f-block molecular entities" RELATED [ChEBI] +is_a: CHEBI:33497 ! transition element molecular entity +relationship: has_part CHEBI:33562 ! f-block element atom + +[Term] +id: CHEBI:33692 +name: hydrides +namespace: chebi_ontology +def: "Hydrides are chemical compounds of hydrogen with other chemical elements." [] +subset: 3_STAR +is_a: CHEBI:33608 ! hydrogen molecular entity +is_a: CHEBI:37577 ! heteroatomic molecular entity + +[Term] +id: CHEBI:33693 +name: oxygen hydride +namespace: chebi_ontology +subset: 3_STAR +synonym: "hydrides of oxygen" RELATED [ChEBI] +synonym: "oxygen hydride" EXACT [ChEBI] +synonym: "oxygen hydrides" RELATED [ChEBI] +is_a: CHEBI:36902 ! chalcogen hydride + +[Term] +id: CHEBI:33694 +name: biomacromolecule +namespace: chebi_ontology +def: "A macromolecule formed by a living organism." [] +subset: 3_STAR +synonym: "biomacromolecules" RELATED [ChEBI] +synonym: "biopolymer" EXACT IUPAC_NAME [IUPAC] +synonym: "Biopolymere" RELATED [ChEBI] +synonym: "biopolymers" RELATED [ChEBI] +is_a: CHEBI:33839 ! macromolecule +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:33702 +name: polyatomic cation +namespace: chebi_ontology +def: "A cation consisting of more than one atom." [] +subset: 3_STAR +synonym: "polyatomic cations" RELATED [ChEBI] +is_a: CHEBI:36358 ! polyatomic ion +is_a: CHEBI:36916 ! cation + +[Term] +id: CHEBI:33703 +name: amino-acid cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "amino acid cation" RELATED [ChEBI] +synonym: "amino-acid cation" EXACT [ChEBI] +synonym: "amino-acid cations" RELATED [ChEBI] +is_a: CHEBI:33702 ! polyatomic cation + +[Term] +id: CHEBI:33704 +name: alpha-amino acid +namespace: chebi_ontology +alt_id: CHEBI:10208 +alt_id: CHEBI:13779 +alt_id: CHEBI:22442 +alt_id: CHEBI:2642 +def: "An amino acid in which the amino group is located on the carbon atom at the position alpha to the carboxy group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "74.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "74.05870" RELATED MASS [ChEBI] +synonym: "alpha-amino acid" EXACT IUPAC_NAME [IUPAC] +synonym: "alpha-amino acids" RELATED [ChEBI] +synonym: "alpha-amino acids" RELATED [JCBN] +synonym: "alpha-amino carboxylic acids" RELATED [IUPAC] +synonym: "Amino acid" RELATED [KEGG_COMPOUND] +synonym: "Amino acids" RELATED [KEGG_COMPOUND] +synonym: "C2H4NO2R" RELATED FORMULA [ChEBI] +synonym: "NC([*])C(O)=O" RELATED SMILES [ChEBI] +xref: KEGG:C00045 +xref: KEGG:C05167 +is_a: CHEBI:33709 ! amino acid +relationship: is_conjugate_acid_of CHEBI:33558 ! alpha-amino-acid anion +relationship: is_tautomer_of CHEBI:78608 ! alpha-amino acid zwitterion +property_value: http://purl.obolibrary.org/obo/chebi/formula "C2H4NO2R" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/mass "74.05870" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "74.024" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/smiles "NC([*])C(O)=O" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33706 +name: beta-amino acid +namespace: chebi_ontology +def: "A non-proteinogenic amino acid in which the amino group is located on the carbon atom at the position beta to the carboxy group." [] +subset: 3_STAR +synonym: "beta-amino acid" EXACT [ChEBI] +synonym: "beta-amino acids" RELATED [ChEBI] +is_a: CHEBI:83820 ! non-proteinogenic amino acid + +[Term] +id: CHEBI:33707 +name: gamma-amino acid +namespace: chebi_ontology +def: "A non-proteinogenic amino-acid in which the amino group is located on the carbon atom at the position gamma to the carboxy group." [] +subset: 3_STAR +synonym: "gamma-amino acid" EXACT [ChEBI] +synonym: "gamma-amino acids" RELATED [ChEBI] +is_a: CHEBI:83820 ! non-proteinogenic amino acid +relationship: is_conjugate_acid_of CHEBI:71666 ! gamma-amino acid anion + +[Term] +id: CHEBI:33708 +name: amino-acid residue +namespace: chebi_ontology +def: "When two or more amino acids combine to form a peptide, the elements of water are removed, and what remains of each amino acid is called an amino-acid residue." [] +subset: 3_STAR +synonym: "amino acid residue" RELATED [ChEBI] +synonym: "amino-acid residue" EXACT IUPAC_NAME [IUPAC] +synonym: "amino-acid residues" RELATED [JCBN] +is_a: CHEBI:33247 ! organic group +relationship: is_substituent_group_from CHEBI:33709 ! amino acid + +[Term] +id: CHEBI:33709 +name: amino acid +namespace: chebi_ontology +alt_id: CHEBI:13815 +alt_id: CHEBI:22477 +def: "A carboxylic acid containing one or more amino groups." [] +subset: 3_STAR +synonym: "amino acids" RELATED [ChEBI] +synonym: "Aminocarbonsaeure" RELATED [ChEBI] +synonym: "Aminokarbonsaeure" RELATED [ChEBI] +synonym: "Aminosaeure" RELATED [ChEBI] +xref: Wikipedia:Amino_acid +is_a: CHEBI:33575 ! carboxylic acid +is_a: CHEBI:50047 ! organic amino compound +relationship: is_conjugate_acid_of CHEBI:37022 ! amino-acid anion +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33719 +name: alpha-amino-acid cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "alpha-amino acid cations" RELATED [ChEBI] +synonym: "alpha-amino-acid cation" EXACT [ChEBI] +synonym: "alpha-amino-acid cations" RELATED [ChEBI] +is_a: CHEBI:33703 ! amino-acid cation + +[Term] +id: CHEBI:33720 +name: carbohydrate acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "carbohydrate acid" EXACT [ChEBI] +synonym: "carbohydrate acids" RELATED [ChEBI] +is_a: CHEBI:16646 ! carbohydrate +is_a: CHEBI:33575 ! carboxylic acid +relationship: is_conjugate_acid_of CHEBI:33721 ! carbohydrate acid anion + +[Term] +id: CHEBI:33721 +name: carbohydrate acid anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "carbohydrate acid anion" EXACT [ChEBI] +synonym: "carbohydrate acid anions" RELATED [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion +relationship: is_conjugate_base_of CHEBI:33720 ! carbohydrate acid + +[Term] +id: CHEBI:33731 +name: cluster +namespace: chebi_ontology +def: "A cluster is a number of metal centres grouped close together which can have direct metal bonding interactions or interactions through a bridging ligand, but are not necessarily held together by these interactions." [] +subset: 3_STAR +synonym: "cluster" EXACT IUPAC_NAME [IUPAC] +synonym: "cluster compound" RELATED [ChEBI] +synonym: "cluster compounds" RELATED [ChEBI] +synonym: "clusters" RELATED [ChEBI] +synonym: "polynuclear clusters" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:36357 ! polyatomic entity + +[Term] +id: CHEBI:33733 +name: heteronuclear cluster +namespace: chebi_ontology +subset: 3_STAR +synonym: "hetero-nuclear clusters" EXACT IUPAC_NAME [IUPAC] +synonym: "heteronuclear cluster" EXACT [ChEBI] +synonym: "heteronuclear clusters" RELATED [ChEBI] +is_a: CHEBI:33731 ! cluster + +[Term] +id: CHEBI:33738 +name: di-mu-sulfido-diiron(1+) +namespace: chebi_ontology +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "175.814" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "175.82200" RELATED MASS [ChEBI] +synonym: "[2Fe-2S](1+)" RELATED [UniProt] +synonym: "[2Fe-2S](1+)" RELATED [IUBMB] +synonym: "[Fe2(mu-S)2](+)" RELATED [ChEBI] +synonym: "[Fe2S2](+)" RELATED [ChEBI] +synonym: "di-mu-sulfido-diiron(1+)" EXACT IUPAC_NAME [IUPAC] +synonym: "di-mu-sulfido-diiron(II,III)" EXACT IUPAC_NAME [IUPAC] +synonym: "Fe2S2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/2Fe.2S/q;+1;;" RELATED InChI [ChEBI] +synonym: "MAGIRAZQQVQNKP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "S1[Fe]S[Fe+]1" RELATED SMILES [ChEBI] +xref: Gmelin:1485588 "Gmelin" +is_a: CHEBI:49601 ! Fe2S2 iron-sulfur cluster + +[Term] +id: CHEBI:33741 +name: chromium group molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "chromium group molecular entities" RELATED [ChEBI] +synonym: "chromium group molecular entity" EXACT [ChEBI] +is_a: CHEBI:33676 ! d-block molecular entity +relationship: has_part CHEBI:33350 ! chromium group element atom + +[Term] +id: CHEBI:33742 +name: tungsten molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "tungsten compounds" RELATED [ChEBI] +synonym: "tungsten molecular entities" RELATED [ChEBI] +synonym: "tungsten molecular entity" EXACT [ChEBI] +is_a: CHEBI:33741 ! chromium group molecular entity +relationship: has_part CHEBI:27998 ! tungsten + +[Term] +id: CHEBI:33743 +name: manganese group molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "manganese group molecular entities" RELATED [ChEBI] +synonym: "manganese group molecular entity" EXACT [ChEBI] +is_a: CHEBI:33676 ! d-block molecular entity +relationship: has_part CHEBI:33352 ! manganese group element atom + +[Term] +id: CHEBI:33744 +name: iron group molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "iron group molecular entities" RELATED [ChEBI] +synonym: "iron group molecular entity" EXACT [ChEBI] +is_a: CHEBI:33676 ! d-block molecular entity +relationship: has_part CHEBI:33356 ! iron group element atom + +[Term] +id: CHEBI:33745 +name: copper group molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "copper group molecular entities" RELATED [ChEBI] +synonym: "copper group molecular entity" EXACT [ChEBI] +is_a: CHEBI:33676 ! d-block molecular entity +relationship: has_part CHEBI:33366 ! copper group element atom + +[Term] +id: CHEBI:33747 +name: nickel group molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "nickel group molecular entities" RELATED [ChEBI] +synonym: "nickel group molecular entity" EXACT [ChEBI] +is_a: CHEBI:33676 ! d-block molecular entity +relationship: has_part CHEBI:33362 ! nickel group element atom + +[Term] +id: CHEBI:33748 +name: nickel molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "nickel compounds" RELATED [ChEBI] +synonym: "nickel molecular entities" RELATED [ChEBI] +synonym: "nickel molecular entity" EXACT [ChEBI] +is_a: CHEBI:33747 ! nickel group molecular entity +relationship: has_part CHEBI:28112 ! nickel atom + +[Term] +id: CHEBI:33749 +name: platinum molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "platinum compounds" RELATED [ChEBI] +synonym: "platinum molecular entities" RELATED [ChEBI] +synonym: "platinum molecular entity" EXACT [ChEBI] +is_a: CHEBI:33747 ! nickel group molecular entity +relationship: has_part CHEBI:33364 ! platinum + +[Term] +id: CHEBI:33752 +name: hexonic acid +namespace: chebi_ontology +def: "Any aldonic acid formed by oxidising the aldehyde group of an aldohexose to a carboxylic acid group." [] +subset: 3_STAR +synonym: "aldohexonic acids" RELATED [ChEBI] +synonym: "hexonic acid" EXACT [ChEBI] +synonym: "hexonic acids" RELATED [ChEBI] +is_a: CHEBI:22301 ! aldonic acid + +[Term] +id: CHEBI:33754 +name: trionic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "aldotrionic acids" RELATED [ChEBI] +synonym: "trionic acid" EXACT [ChEBI] +synonym: "trionic acids" RELATED [ChEBI] +is_a: CHEBI:22301 ! aldonic acid + +[Term] +id: CHEBI:33760 +name: hexonate +namespace: chebi_ontology +subset: 3_STAR +synonym: "aldohexonates" RELATED [ChEBI] +synonym: "hexonate" EXACT [ChEBI] +synonym: "hexonates" RELATED [ChEBI] +is_a: CHEBI:22299 ! aldonate + +[Term] +id: CHEBI:33763 +name: trionate +namespace: chebi_ontology +subset: 3_STAR +synonym: "aldotrionates" RELATED [ChEBI] +synonym: "trionate" EXACT [ChEBI] +synonym: "trionates" RELATED [ChEBI] +is_a: CHEBI:22299 ! aldonate + +[Term] +id: CHEBI:33768 +name: titanium group molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "titanium group molecular entities" RELATED [ChEBI] +synonym: "titanium group molecular entity" EXACT [ChEBI] +is_a: CHEBI:33676 ! d-block molecular entity +relationship: has_part CHEBI:33345 ! titanium group element atom + +[Term] +id: CHEBI:33775 +name: lanthanoid molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "lanthanoid compounds" RELATED [ChEBI] +synonym: "lanthanoid molecular entities" RELATED [ChEBI] +is_a: CHEBI:33677 ! f-block molecular entity +relationship: has_part CHEBI:33319 ! lanthanoid atom + +[Term] +id: CHEBI:33798 +name: tetraric acid anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "tetrarate" RELATED [ChEBI] +synonym: "tetrarates" RELATED [ChEBI] +synonym: "tetraric acid anions" RELATED [ChEBI] +is_a: CHEBI:22289 ! aldaric acid anion + +[Term] +id: CHEBI:33801 +name: D-glucarate(1-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "C6H9O8" RELATED FORMULA [ChEBI] +synonym: "D-saccharate" RELATED [ChEBI] +synonym: "D-saccharate(1-)" RELATED [ChEBI] +synonym: "hydrogen D-glucarate" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:35392 ! glucarate(1-) +relationship: is_conjugate_acid_of CHEBI:30612 ! D-glucarate(2-) +relationship: is_conjugate_base_of CHEBI:16002 ! D-glucaric acid + +[Term] +id: CHEBI:33804 +name: gluconates +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:33760 ! hexonate + +[Term] +id: CHEBI:33808 +name: galacturonic acids +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:24592 ! hexuronic acid + +[Term] +id: CHEBI:33812 +name: galacturonates +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:24591 ! hexuronate + +[Term] +id: CHEBI:33822 +name: organic hydroxy compound +namespace: chebi_ontology +alt_id: CHEBI:64710 +def: "An organic compound having at least one hydroxy group attached to a carbon atom." [] +subset: 3_STAR +synonym: "hydroxy compounds" EXACT IUPAC_NAME [IUPAC] +synonym: "organic alcohol" RELATED [ChEBI] +synonym: "organic hydroxy compounds" RELATED [ChEBI] +is_a: CHEBI:24651 ! hydroxides +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:33823 +name: enol +namespace: chebi_ontology +def: "Alkenols; the term refers specifically to vinylic alcohols, which have the structure HOCR'=CR2. Enols are tautomeric with aldehydes (R' = H) or ketones (R' =/= H)." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "41.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "41.02870" RELATED MASS [ChEBI] +synonym: "alkenols" RELATED [IUPAC] +synonym: "C2HOR3" RELATED FORMULA [ChEBI] +synonym: "enol" EXACT [IUPAC] +synonym: "enols" EXACT IUPAC_NAME [IUPAC] +synonym: "enols" RELATED [ChEBI] +synonym: "O\\C([*])=C(/[*])[*]" RELATED SMILES [ChEBI] +is_a: CHEBI:33822 ! organic hydroxy compound +is_a: CHEBI:78840 ! olefinic compound + +[Term] +id: CHEBI:33830 +name: galacturonic acid +namespace: chebi_ontology +alt_id: CHEBI:24176 +alt_id: CHEBI:42929 +alt_id: CHEBI:5261 +subset: 3_STAR +synonym: "C6H10O7" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Galacturonic acid" EXACT [KEGG_COMPOUND] +xref: CAS:14982-50-4 "KEGG COMPOUND" +xref: DrugBank:DB03511 +xref: KEGG:C08348 +xref: PMID:24315943 "Europe PMC" +is_a: CHEBI:33808 ! galacturonic acids +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_acid_of CHEBI:24175 ! galacturonate + +[Term] +id: CHEBI:33832 +name: organic cyclic compound +namespace: chebi_ontology +def: "Any organic molecule that consists of atoms connected in the form of a ring." [] +subset: 3_STAR +synonym: "organic cyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33595 ! cyclic compound +is_a: CHEBI:72695 ! organic molecule +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:33833 +name: heteroarene +namespace: chebi_ontology +def: "A heterocyclic compound formally derived from an arene by replacement of one or more methine (-C=) and/or vinylene (-CH=CH-) groups by trivalent or divalent heteroatoms, respectively, in such a way as to maintain the continuous pi-electron system characteristic of aromatic systems and a number of out-of-plane pi-electrons corresponding to the Hueckel rule (4n+2)." [] +subset: 3_STAR +synonym: "hetarenes" RELATED [IUPAC] +synonym: "heteroarenes" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:24532 ! organic heterocyclic compound +is_a: CHEBI:33659 ! organic aromatic compound + +[Term] +id: CHEBI:33836 +name: benzenoid aromatic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "benzenoid aromatic compounds" RELATED [ChEBI] +synonym: "benzenoid compound" RELATED [ChEBI] +is_a: CHEBI:33598 ! carbocyclic compound +is_a: CHEBI:33659 ! organic aromatic compound + +[Term] +id: CHEBI:33838 +name: nucleoside +namespace: chebi_ontology +alt_id: CHEBI:13661 +alt_id: CHEBI:25611 +alt_id: CHEBI:7647 +def: "An N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "116.047" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "116.115" RELATED MASS [ChEBI] +synonym: "[C@H]1([C@H]([C@@H](*)[C@@H](O1)*)O)CO" RELATED SMILES [ChEBI] +synonym: "a nucleoside" RELATED [UniProt] +synonym: "C5H8O3R2" RELATED FORMULA [ChEBI] +synonym: "Nucleoside" EXACT [KEGG_COMPOUND] +synonym: "nucleosides" EXACT IUPAC_NAME [IUPAC] +synonym: "nucleosides" RELATED [ChEBI] +xref: KEGG:C00801 +is_a: CHEBI:21731 ! N-glycosyl compound +is_a: CHEBI:26912 ! oxolanes +is_a: CHEBI:61120 ! nucleobase-containing molecular entity + +[Term] +id: CHEBI:33839 +name: macromolecule +namespace: chebi_ontology +def: "A macromolecule is a molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [] +subset: 3_STAR +synonym: "macromolecule" EXACT IUPAC_NAME [IUPAC] +synonym: "macromolecules" RELATED [ChEBI] +synonym: "polymer" RELATED [ChEBI] +synonym: "polymer molecule" RELATED [IUPAC] +synonym: "polymers" RELATED [ChEBI] +xref: Wikipedia:Macromolecule +is_a: CHEBI:36357 ! polyatomic entity + +[Term] +id: CHEBI:33842 +name: aromatic annulene +namespace: chebi_ontology +subset: 3_STAR +synonym: "aromatic annulenes" RELATED [ChEBI] +is_a: CHEBI:33662 ! annulene +is_a: CHEBI:33847 ! monocyclic arene + +[Term] +id: CHEBI:33847 +name: monocyclic arene +namespace: chebi_ontology +def: "A monocyclic aromatic hydrocarbon." [] +subset: 3_STAR +synonym: "monocyclic arenes" RELATED [ChEBI] +is_a: CHEBI:33658 ! arene + +[Term] +id: CHEBI:33848 +name: polycyclic arene +namespace: chebi_ontology +def: "A polycyclic aromatic hydrocarbon." [] +subset: 3_STAR +synonym: "PAH" RELATED [ChEBI] +synonym: "PAHs" RELATED [ChEBI] +synonym: "polycyclic arenes" RELATED [ChEBI] +synonym: "polycyclic aromatic hydrocarbons" RELATED [ChEBI] +xref: PMID:15198916 "Europe PMC" +xref: PMID:25679824 "Europe PMC" +xref: Wikipedia:Polycyclic_aromatic_hydrocarbon +is_a: CHEBI:33658 ! arene +is_a: CHEBI:33666 ! polycyclic hydrocarbon +relationship: has_role CHEBI:138015 ! endocrine disruptor +relationship: has_role CHEBI:50903 ! carcinogenic agent + +[Term] +id: CHEBI:33853 +name: phenols +namespace: chebi_ontology +alt_id: CHEBI:13664 +alt_id: CHEBI:13825 +alt_id: CHEBI:25969 +alt_id: CHEBI:2857 +def: "Organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring." [] +subset: 3_STAR +synonym: "arenols" RELATED [IUPAC] +synonym: "Aryl alcohol" RELATED [KEGG_COMPOUND] +synonym: "aryl alcohol" RELATED [UniProt] +synonym: "phenols" EXACT IUPAC_NAME [IUPAC] +xref: KEGG:C15584 +xref: MetaCyc:Aryl-Alcohol +xref: Wikipedia:Phenols +is_a: CHEBI:33659 ! organic aromatic compound +is_a: CHEBI:33822 ! organic hydroxy compound + +[Term] +id: CHEBI:33856 +name: aromatic amino acid +namespace: chebi_ontology +alt_id: CHEBI:13820 +alt_id: CHEBI:22623 +alt_id: CHEBI:2835 +subset: 3_STAR +synonym: "0" RELATED CHARGE [KEGG_COMPOUND] +synonym: "74.024" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "88.085" RELATED MASS [KEGG_COMPOUND] +synonym: "Aromatic amino acid" EXACT [KEGG_COMPOUND] +synonym: "aromatic amino acid" EXACT [UniProt] +synonym: "aromatic amino acids" RELATED [ChEBI] +synonym: "Aromatic L-amino acid" RELATED [KEGG_COMPOUND] +synonym: "C2H4NO2R" RELATED FORMULA [KEGG_COMPOUND] +xref: KEGG:C01021 +is_a: CHEBI:33659 ! organic aromatic compound +is_a: CHEBI:33709 ! amino acid +relationship: is_conjugate_acid_of CHEBI:63473 ! aromatic amino-acid anion +relationship: is_tautomer_of CHEBI:76042 ! aromatic amino-acid zwitterion + +[Term] +id: CHEBI:33859 +name: aromatic carboxylic acid +namespace: chebi_ontology +alt_id: CHEBI:13817 +alt_id: CHEBI:13821 +alt_id: CHEBI:2830 +def: "Any carboxylic acid in which the carboxy group is directly bonded to an aromatic ring." [] +subset: 3_STAR +synonym: "aromatic carboxylic acids" RELATED [ChEBI] +is_a: CHEBI:33575 ! carboxylic acid +is_a: CHEBI:33659 ! organic aromatic compound +relationship: is_conjugate_acid_of CHEBI:91007 ! aromatic carboxylate + +[Term] +id: CHEBI:33860 +name: aromatic amine +namespace: chebi_ontology +alt_id: CHEBI:13827 +alt_id: CHEBI:22622 +alt_id: CHEBI:22646 +alt_id: CHEBI:2834 +alt_id: CHEBI:2863 +def: "An amino compound in which the amino group is linked directly to an aromatic system." [] +subset: 3_STAR +synonym: "aromatic amines" RELATED [ChEBI] +synonym: "aryl amine" RELATED [ChEBI] +synonym: "aryl amines" RELATED [ChEBI] +synonym: "arylamine" RELATED [ChEBI] +synonym: "arylamines" RELATED [ChEBI] +is_a: CHEBI:33659 ! organic aromatic compound +is_a: CHEBI:50047 ! organic amino compound + +[Term] +id: CHEBI:33861 +name: transition element coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "transition element coordination entities" RELATED [ChEBI] +synonym: "transition metal coordination compounds" RELATED [ChEBI] +synonym: "transition metal coordination entities" RELATED [ChEBI] +is_a: CHEBI:33240 ! coordination entity +is_a: CHEBI:33497 ! transition element molecular entity + +[Term] +id: CHEBI:33862 +name: platinum coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "platinum coordination compounds" RELATED [ChEBI] +synonym: "platinum coordination entities" RELATED [ChEBI] +synonym: "platinum coordination entity" EXACT [ChEBI] +is_a: CHEBI:33749 ! platinum molecular entity +is_a: CHEBI:33861 ! transition element coordination entity + +[Term] +id: CHEBI:33867 +name: idonates +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:33760 ! hexonate + +[Term] +id: CHEBI:33871 +name: glycerate +namespace: chebi_ontology +def: "A hydroxy monocarboxylic acid anion that is the conjugate base of glyceric acid, obtained by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "105.019" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "105.06940" RELATED MASS [ChEBI] +synonym: "C3H5O4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H6O4/c4-1-2(5)3(6)7/h2,4-5H,1H2,(H,6,7)/p-1" RELATED InChI [ChEBI] +synonym: "OCC(O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "RBNPOMFGQQGHHO-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Reaxys:3602204 "Reaxys" +is_a: CHEBI:24347 ! glycerates +is_a: CHEBI:36059 ! hydroxy monocarboxylic acid anion +relationship: has_functional_parent CHEBI:17272 ! propionate +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:33508 ! glyceric acid + +[Term] +id: CHEBI:33883 +name: fructuronic acids +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:24592 ! hexuronic acid + +[Term] +id: CHEBI:33886 +name: glucuronic acids +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:24592 ! hexuronic acid +relationship: is_conjugate_acid_of CHEBI:33903 ! glucuronates + +[Term] +id: CHEBI:33892 +name: iron coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "iron coordination compounds" RELATED [ChEBI] +synonym: "iron coordination entities" RELATED [ChEBI] +synonym: "iron coordination entity" EXACT [ChEBI] +is_a: CHEBI:24873 ! iron molecular entity +is_a: CHEBI:33861 ! transition element coordination entity + +[Term] +id: CHEBI:33893 +name: reagent +namespace: chebi_ontology +def: "A substance used in a chemical reaction to detect, measure, examine, or produce other substances." [] +subset: 3_STAR +synonym: "reactif" RELATED [IUPAC] +synonym: "reactivo" RELATED [IUPAC] +synonym: "reagent" EXACT IUPAC_NAME [IUPAC] +synonym: "reagents" RELATED [ChEBI] +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:33901 +name: fructuronates +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:24591 ! hexuronate + +[Term] +id: CHEBI:33903 +name: glucuronates +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:24591 ! hexuronate +relationship: is_conjugate_base_of CHEBI:33886 ! glucuronic acids + +[Term] +id: CHEBI:33916 +name: aldopentose +namespace: chebi_ontology +def: "A pentose with a (potential) aldehyde group at one end." [] +subset: 3_STAR +synonym: "aldopentose" EXACT [ChEBI] +synonym: "aldopentoses" RELATED [ChEBI] +xref: PMID:10723607 "Europe PMC" +is_a: CHEBI:15693 ! aldose +is_a: CHEBI:25901 ! pentose + +[Term] +id: CHEBI:33917 +name: aldohexose +namespace: chebi_ontology +alt_id: CHEBI:2558 +def: "A hexose with a (potential) aldehyde group at one end." [] +subset: 3_STAR +synonym: "aldohexose" EXACT [ChEBI] +synonym: "aldohexoses" RELATED [ChEBI] +is_a: CHEBI:15693 ! aldose +is_a: CHEBI:18133 ! hexose + +[Term] +id: CHEBI:33937 +name: macronutrient +namespace: chebi_ontology +subset: 1_STAR +synonym: "macronutrients" RELATED [ChEBI] +is_a: CHEBI:33284 ! nutrient + +[Term] +id: CHEBI:33942 +name: ribose +namespace: chebi_ontology +alt_id: CHEBI:26564 +def: "Any aldopentose where the open-chain form has all the hydroxy groups on the same side in the Fischer projection. Occurrs in two enantiomeric forms, D- and L-ribose, of which only the former is found in nature." [] +subset: 3_STAR +synonym: "C5H10O5" RELATED FORMULA [ChEBI] +synonym: "Rib" RELATED [JCBN] +synonym: "ribo-pentose" EXACT IUPAC_NAME [IUPAC] +synonym: "ribose" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33916 ! aldopentose + +[Term] +id: CHEBI:33958 +name: halide salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "halide salts" RELATED [ChEBI] +synonym: "halides" RELATED [ChEBI] +is_a: CHEBI:24866 ! salt +is_a: CHEBI:37578 ! halide +relationship: has_part CHEBI:16042 ! halide anion + +[Term] +id: CHEBI:33969 +name: gold molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "gold compounds" RELATED [ChEBI] +synonym: "gold molecular entities" RELATED [ChEBI] +synonym: "gold molecular entity" EXACT [ChEBI] +is_a: CHEBI:33745 ! copper group molecular entity +relationship: has_part CHEBI:29287 ! gold atom + +[Term] +id: CHEBI:33970 +name: elemental gold +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:33969 ! gold molecular entity + +[Term] +id: CHEBI:33975 +name: magnesium salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "magnesium salts" RELATED [ChEBI] +is_a: CHEBI:25108 ! magnesium molecular entity +is_a: CHEBI:36364 ! alkaline earth salt + +[Term] +id: CHEBI:33983 +name: deoxymannose +namespace: chebi_ontology +subset: 3_STAR +synonym: "deoxymannoses" RELATED [ChEBI] +is_a: CHEBI:23628 ! deoxyhexose + +[Term] +id: CHEBI:33984 +name: fucose +namespace: chebi_ontology +alt_id: CHEBI:24118 +alt_id: CHEBI:5182 +def: "Any deoxygalactose that is deoxygenated at the 6-position." [] +subset: 3_STAR +synonym: "6-Deoxygalactose" RELATED [KEGG_COMPOUND] +synonym: "6-deoxygalactose" EXACT IUPAC_NAME [IUPAC] +synonym: "Fuc" RELATED [JCBN] +synonym: "Fucose" EXACT [KEGG_COMPOUND] +synonym: "fucose" EXACT IUPAC_NAME [IUPAC] +xref: CAS:7724-73-4 "ChemIDplus" +xref: KEGG:C00382 +xref: PMID:12651883 "Europe PMC" +is_a: CHEBI:23622 ! deoxygalactose + +[Term] +id: CHEBI:33985 +name: muramates +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:63551 ! carbohydrate acid derivative anion + +[Term] +id: CHEBI:3424 +name: carnitinium +namespace: chebi_ontology +def: "A quaternary ammonium ion that is the the conjugate acid of carnitine." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "162.113" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "162.20688" RELATED MASS [ChEBI] +synonym: "3-carboxy-2-hydroxy-N,N,N-trimethylpropan-1-aminium" EXACT IUPAC_NAME [IUPAC] +synonym: "3-hydroxy-4-(trimethylammonio)butanoic acid" RELATED [ChEBI] +synonym: "C7H16NO3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C[N+](C)(C)CC(O)CC(O)=O" RELATED SMILES [ChEBI] +synonym: "Carnitine" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C7H15NO3/c1-8(2,3)5-6(9)4-7(10)11/h6,9H,4-5H2,1-3H3/p+1" RELATED InChI [ChEBI] +synonym: "PHIQHXFUZVPYII-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +xref: CAS:406-76-8 "KEGG COMPOUND" +xref: CAS:461-06-3 "KEGG COMPOUND" +xref: KEGG:C00487 +is_a: CHEBI:35267 ! quaternary ammonium ion +relationship: has_functional_parent CHEBI:16080 ! gamma-amino-beta-hydroxybutyric acid +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:17126 ! carnitine + +[Term] +id: CHEBI:34768 +name: furfural +namespace: chebi_ontology +alt_id: CHEBI:42593 +def: "An aldehyde that is furan with the hydrogen at position 2 substituted by a formyl group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-Formylfuran" RELATED [ChemIDplus] +synonym: "2-Furaldehyde" RELATED [KEGG_COMPOUND] +synonym: "2-Furanaldehyde" RELATED [NIST_Chemistry_WebBook] +synonym: "2-Furancarbonal" RELATED [ChemIDplus] +synonym: "2-Furancarboxaldehyde" RELATED [ChemIDplus] +synonym: "2-Furyl-methanal" RELATED [ChemIDplus] +synonym: "2-Furylcarboxaldehyde" RELATED [ChemIDplus] +synonym: "96.021" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "96.08410" RELATED MASS [ChEBI] +synonym: "C5H4O2" RELATED FORMULA [ChEBI] +synonym: "Furaldehyde" RELATED [NIST_Chemistry_WebBook] +synonym: "furan-2-carbaldehyde" EXACT IUPAC_NAME [IUPAC] +synonym: "HYBBIBNJHNGZAN-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H4O2/c6-4-5-2-1-3-7-5/h1-4H" RELATED InChI [ChEBI] +synonym: "O=Cc1ccco1" RELATED SMILES [ChEBI] +xref: CAS:98-01-1 "NIST Chemistry WebBook" +xref: colombos:FURFURAL +xref: KEGG:C14279 +xref: KNApSAcK:C00030331 +xref: MetaCyc:CPD0-2357 +xref: PDBeChem:FU2 +xref: PMID:17439666 "Europe PMC" +xref: PMID:21925629 "Europe PMC" +xref: PMID:22081946 "Europe PMC" +xref: PMID:22133603 "Europe PMC" +xref: PMID:22213717 "Europe PMC" +xref: PMID:22277539 "Europe PMC" +xref: PMID:22315196 "Europe PMC" +xref: PMID:22504824 "Europe PMC" +xref: PMID:22512171 "Europe PMC" +xref: PMID:22592554 "Europe PMC" +xref: PMID:22639140 "Europe PMC" +xref: PMID:22648683 "Europe PMC" +xref: PMID:22703600 "Europe PMC" +xref: Reaxys:105755 "Reaxys" +xref: Wikipedia:Furfural +xref: YMDB:YMDB01459 +is_a: CHEBI:17478 ! aldehyde +is_a: CHEBI:24129 ! furans +relationship: has_functional_parent CHEBI:35559 ! furan +relationship: has_role CHEBI:25212 ! metabolite +relationship: has_role CHEBI:77523 ! Maillard reaction product + +[Term] +id: CHEBI:34887 +name: nickel dichloride +namespace: chebi_ontology +def: "A compound of nickel and chloride in which the ratio of nickel (in the +2 oxidation state) to chloride is 1:2." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "127.873" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "129.59880" RELATED MASS [ChEBI] +synonym: "[NiCl2]" RELATED [IUPAC] +synonym: "Cl2Ni" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cl[Ni]Cl" RELATED SMILES [ChEBI] +synonym: "InChI=1S/2ClH.Ni/h2*1H;/q;;+2/p-2" RELATED InChI [ChEBI] +synonym: "Nickel chloride" RELATED [KEGG_COMPOUND] +synonym: "nickel dichloride" EXACT IUPAC_NAME [IUPAC] +synonym: "nickel(2+) chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "Nickel(II) chloride" RELATED [KEGG_COMPOUND] +synonym: "nickel(II) chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "nickelous chloride" RELATED [ChemIDplus] +synonym: "NiCl2" RELATED [IUPAC] +synonym: "QMMRZOWCJAIUJA-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +xref: CAS:7718-54-9 "KEGG COMPOUND" +xref: KEGG:C14711 +xref: PMID:11739495 "Europe PMC" +xref: PMID:12603851 "Europe PMC" +xref: PMID:21928331 "Europe PMC" +xref: PMID:23179351 "Europe PMC" +xref: PMID:23622879 "Europe PMC" +xref: PMID:23702803 "Europe PMC" +xref: PMID:23735035 "Europe PMC" +xref: PMID:7671317 "Europe PMC" +xref: Reaxys:3902827 "Reaxys" +xref: Reaxys:8128171 "Reaxys" +xref: Wikipedia:Nickel_dichloride +is_a: CHEBI:35438 ! nickel coordination entity +relationship: has_role CHEBI:38215 ! calcium channel blocker +relationship: has_role CHEBI:59174 ! hapten + +[Term] +id: CHEBI:34905 +name: paraquat +namespace: chebi_ontology +def: "An organic cation that consists of 4,4'-bipyridine bearing two N-methyl substituents loctated at the 1- and 1'-positions." [] +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "1,1'-Dimethyl-4,4'-bipyridinium" RELATED [KEGG_COMPOUND] +synonym: "1,1'-dimethyl-4,4'-bipyridyldiylium" RELATED [ChemIDplus] +synonym: "1,1'-dimethyl-[4,4'-bipyridin]-1,1'-diium" EXACT IUPAC_NAME [IUPAC] +synonym: "186.116" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "186.25304" RELATED MASS [ChEBI] +synonym: "C12H14N2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C[n+]1ccc(cc1)-c1cc[n+](C)cc1" RELATED SMILES [ChEBI] +synonym: "dimethyl viologen" RELATED [ChemIDplus] +synonym: "InChI=1S/C12H14N2/c1-13-7-3-11(4-8-13)12-5-9-14(2)10-6-12/h3-10H,1-2H3/q+2" RELATED InChI [ChEBI] +synonym: "INFDPOAKFNIJBF-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "methyl viologen ion(2+)" RELATED [ChemIDplus] +synonym: "N,N'-dimethyl-4,4'-bipyridinium" RELATED [ChemIDplus] +synonym: "N,N'-dimethyl-4,4'-bipyridinium dication" RELATED [ChemIDplus] +synonym: "Paraquat" EXACT [KEGG_COMPOUND] +synonym: "paraquat dication" RELATED [ChemIDplus] +synonym: "paraquat ion" RELATED [ChemIDplus] +xref: Beilstein:3590305 "Beilstein" +xref: CAS:4685-14-7 "ChemIDplus" +xref: colombos:PARAQUAT +xref: Gmelin:51125 "Gmelin" +xref: KEGG:C14701 +xref: PMID:11349957 "Europe PMC" +xref: PMID:18620719 "Europe PMC" +xref: PMID:20377249 "Europe PMC" +xref: PMID:20582739 "Europe PMC" +xref: PMID:21236547 "Europe PMC" +xref: PMID:21300143 "Europe PMC" +xref: PMID:21318114 "Europe PMC" +xref: PMID:21429624 "Europe PMC" +xref: PMID:21493003 "Europe PMC" +xref: PMID:21598522 "Europe PMC" +xref: PMID:21616728 "Europe PMC" +xref: PMID:21619794 "Europe PMC" +xref: PMID:21619822 "Europe PMC" +xref: PMID:21750730 "Europe PMC" +xref: PMID:21777615 "Europe PMC" +xref: PMID:21787677 "Europe PMC" +xref: PMID:21802509 "Europe PMC" +xref: Reaxys:3590305 "Reaxys" +is_a: CHEBI:25697 ! organic cation +relationship: has_parent_hydride CHEBI:30985 ! 4,4'-bipyridine +relationship: has_role CHEBI:24527 ! herbicide + +[Term] +id: CHEBI:3507 +name: cefsulodin +namespace: chebi_ontology +def: "A pyridinium-substituted semi-synthetic, broad-spectrum, cephalosporin antibiotic." [] +subset: 3_STAR +synonym: "(6R,7R)-3-[(4-carbamoylpyridinium-1-yl)methyl]-8-oxo-7-{[(2R)-2-phenyl-2-sulfoacetyl]amino}-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "532.072" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "532.54600" RELATED MASS [ChEBI] +synonym: "7beta-{[(2R)-2-phenyl-2-sulfoacetyl]amino}-3-(4-carbamoylpyridinium-1-yl)methyl-3,4-didehydrocepham-4-carboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]12SCC(C[n+]3ccc(cc3)C(N)=O)=C(N1C(=O)[C@H]2NC(=O)[C@@H](c1ccccc1)S(O)(=O)=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C22H20N4O8S2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cefsulodin" EXACT [KEGG_COMPOUND] +synonym: "cefsulodin" RELATED INN [ChemIDplus] +synonym: "cefsulodine" RELATED INN [ChemIDplus] +synonym: "cefsulodino" RELATED INN [ChemIDplus] +synonym: "cefsulodinum" RELATED INN [ChemIDplus] +synonym: "InChI=1S/C22H20N4O8S2/c23-18(27)13-6-8-25(9-7-13)10-14-11-35-21-15(20(29)26(21)16(14)22(30)31)24-19(28)17(36(32,33)34)12-4-2-1-3-5-12/h1-9,15,17,21H,10-11H2,(H4-,23,24,27,28,30,31,32,33,34)/t15-,17-,21-/m1/s1" RELATED InChI [ChEBI] +synonym: "SYLKGLMBLAAGSC-QLVMHMETSA-N" RELATED InChIKey [ChEBI] +xref: CAS:62587-73-9 "ChemIDplus" +xref: colombos:CEFSULODIN +xref: Drug_Central:558 "DrugCentral" +xref: KEGG:C11253 +xref: KEGG:D07653 +xref: PMID:1384868 "Europe PMC" +xref: PMID:23139798 "Europe PMC" +xref: Wikipedia:Cefsulodin +is_a: CHEBI:23066 ! cephalosporin +relationship: has_role CHEBI:36047 ! antibacterial drug + +[Term] +id: CHEBI:35106 +name: nitrogen hydride +namespace: chebi_ontology +subset: 3_STAR +synonym: "nitrogen hydrides" RELATED [ChEBI] +is_a: CHEBI:35881 ! pnictogen hydride +is_a: CHEBI:51143 ! nitrogen molecular entity + +[Term] +id: CHEBI:35107 +name: azane +namespace: chebi_ontology +def: "Saturated acyclic nitrogen hydrides having the general formula NnHn+2." [] +subset: 3_STAR +synonym: "azanes" RELATED [ChEBI] +is_a: CHEBI:35106 ! nitrogen hydride + +[Term] +id: CHEBI:35113 +name: elemental mercury +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:25196 ! mercury molecular entity + +[Term] +id: CHEBI:35115 +name: elemental manganese +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:25154 ! manganese molecular entity + +[Term] +id: CHEBI:35117 +name: manganese coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "manganese coordination compounds" RELATED [ChEBI] +synonym: "manganese coordination entities" RELATED [ChEBI] +synonym: "manganese coordination entity" EXACT [ChEBI] +is_a: CHEBI:25154 ! manganese molecular entity +is_a: CHEBI:33861 ! transition element coordination entity + +[Term] +id: CHEBI:35131 +name: aldose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "aldose phosphates" RELATED [ChEBI] +is_a: CHEBI:33447 ! phospho sugar + +[Term] +id: CHEBI:35132 +name: ketose phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ketose phosphate" EXACT [ChEBI] +synonym: "ketose phosphates" RELATED [ChEBI] +is_a: CHEBI:33447 ! phospho sugar + +[Term] +id: CHEBI:35155 +name: elemental calcium +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:22985 ! calcium molecular entity + +[Term] +id: CHEBI:35175 +name: sulfate salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "sulfate salts" RELATED [ChEBI] +synonym: "sulfates" RELATED [ChEBI] +synonym: "sulphate salts" RELATED [ChEBI] +synonym: "sulphates" RELATED [ChEBI] +is_a: CHEBI:24866 ! salt +is_a: CHEBI:26820 ! sulfates + +[Term] +id: CHEBI:35176 +name: zinc sulfate +namespace: chebi_ontology +def: "A metal sulfate compound having zinc(2+) as the counterion." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "159.881" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "161.45360" RELATED MASS [ChEBI] +synonym: "[Zn++].[O-]S([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/H2O4S.Zn/c1-5(2,3)4;/h(H2,1,2,3,4);/q;+2/p-2" RELATED InChI [ChEBI] +synonym: "NWONKYPBYAMBJT-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "O4SZn" RELATED FORMULA [ChEBI] +synonym: "zinc sulfate" EXACT IUPAC_NAME [IUPAC] +synonym: "zinc sulfate (1:1)" RELATED [ChemIDplus] +synonym: "zinc sulfate anhydrous" RELATED [ChemIDplus] +synonym: "zinc sulphate" RELATED [ChemIDplus] +synonym: "zinc(2+) sulfate" RELATED [IUPAC] +synonym: "zinc(II) sulfate" RELATED [IUPAC] +synonym: "ZnSO4" RELATED [IUPAC] +xref: CAS:7733-02-0 "ChemIDplus" +xref: colombos:ZnSO4 +xref: Gmelin:18165 "Gmelin" +xref: PMID:10469300 "Europe PMC" +xref: PMID:16792750 "Europe PMC" +xref: PMID:23264166 "Europe PMC" +xref: PMID:23271682 "Europe PMC" +xref: PMID:23282999 "Europe PMC" +xref: PMID:23356505 "Europe PMC" +xref: PMID:23689708 "Europe PMC" +xref: PMID:23720981 "Europe PMC" +xref: PMID:8566016 "Europe PMC" +xref: Wikipedia:Zinc_Sulfate +is_a: CHEBI:27364 ! zinc molecular entity +is_a: CHEBI:51336 ! metal sulfate +relationship: has_part CHEBI:29105 ! zinc(2+) + +[Term] +id: CHEBI:35179 +name: 2-oxo monocarboxylic acid anion +namespace: chebi_ontology +alt_id: CHEBI:70795 +def: "An oxo monocarboxylic acid anion in which the oxo group is located at the 2-position." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "2-oxo monocarboxylate" RELATED [ChEBI] +synonym: "2-oxo monocarboxylic acid anions" RELATED [ChEBI] +synonym: "71.985" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[O-]C(=O)C([*])=O" RELATED SMILES [ChEBI] +synonym: "a 2-oxo carboxylate" RELATED [UniProt] +synonym: "C2O3R" RELATED FORMULA [ChEBI] +xref: MetaCyc:2-Oxo-carboxylates "SUBMITTER" +xref: PMID:10850983 "SUBMITTER" +is_a: CHEBI:35902 ! oxo monocarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:35910 ! 2-oxo monocarboxylic acid + +[Term] +id: CHEBI:35186 +name: terpene +namespace: chebi_ontology +def: "A hydrocarbon of biological origin having carbon skeleton formally derived from isoprene [CH2=C(CH3)CH=CH2]." [] +subset: 3_STAR +synonym: "Terpen" RELATED [ChEBI] +synonym: "terpene" EXACT [IUPAC] +synonym: "terpenes" EXACT IUPAC_NAME [IUPAC] +synonym: "terpenes" RELATED [IUPAC] +synonym: "terpeno" RELATED [IUPAC] +synonym: "terpenos" RELATED [IUPAC] +is_a: CHEBI:24632 ! hydrocarbon +is_a: CHEBI:24913 ! isoprenoid + +[Term] +id: CHEBI:35191 +name: triterpene +namespace: chebi_ontology +def: "A C30 terpene." [] +subset: 3_STAR +synonym: "Triterpen" RELATED [ChEBI] +synonym: "triterpenes" EXACT IUPAC_NAME [IUPAC] +synonym: "triterpenes" RELATED [IUPAC] +synonym: "triterpeno" RELATED [IUPAC] +synonym: "triterpenos" RELATED [IUPAC] +is_a: CHEBI:35186 ! terpene + +[Term] +id: CHEBI:35195 +name: surfactant +namespace: chebi_ontology +def: "A substance which lowers the surface tension of the medium in which it is dissolved, and/or the interfacial tension with other phases, and, accordingly, is positively adsorbed at the liquid/vapour and/or at other interfaces." [] +subset: 3_STAR +synonym: "surface active agent" RELATED [IUPAC] +synonym: "surfactant" EXACT IUPAC_NAME [IUPAC] +synonym: "surfactants" RELATED [ChEBI] +is_a: CHEBI:63046 ! emulsifier + +[Term] +id: CHEBI:35196 +name: nitrogen oxide +namespace: chebi_ontology +subset: 3_STAR +synonym: "nitrogen oxides" RELATED [ChEBI] +synonym: "oxides of nitrogen" RELATED [ChEBI] +is_a: CHEBI:24836 ! inorganic oxide +is_a: CHEBI:51143 ! nitrogen molecular entity + +[Term] +id: CHEBI:35202 +name: molybdenum coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "molybdenum coordination compounds" RELATED [ChEBI] +synonym: "molybdenum coordination entities" RELATED [ChEBI] +is_a: CHEBI:25370 ! molybdenum molecular entity +is_a: CHEBI:33861 ! transition element coordination entity + +[Term] +id: CHEBI:35219 +name: plant growth retardant +namespace: chebi_ontology +alt_id: CHEBI:26154 +alt_id: CHEBI:26156 +subset: 3_STAR +synonym: "plant growth inhibitor" RELATED [ChEBI] +synonym: "plant growth inhibitors" RELATED [ChEBI] +synonym: "plant growth retardants" RELATED [ChEBI] +is_a: CHEBI:26155 ! plant growth regulator + +[Term] +id: CHEBI:35221 +name: antimetabolite +namespace: chebi_ontology +def: "A substance which is structurally similar to a metabolite but which competes with it or replaces it, and so prevents or reduces its normal utilization." [] +subset: 3_STAR +synonym: "antimetabolite" EXACT IUPAC_NAME [IUPAC] +synonym: "antimetabolites" RELATED [ChEBI] +xref: Wikipedia:Antimetabolite +is_a: CHEBI:52206 ! biochemical role + +[Term] +id: CHEBI:35222 +name: inhibitor +namespace: chebi_ontology +def: "A substance that diminishes the rate of a chemical reaction." [] +subset: 3_STAR +synonym: "inhibidor" RELATED [ChEBI] +synonym: "inhibiteur" RELATED [ChEBI] +synonym: "inhibitor" EXACT IUPAC_NAME [IUPAC] +synonym: "inhibitors" RELATED [ChEBI] +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:35223 +name: catalyst +namespace: chebi_ontology +def: "A substance that increases the rate of a reaction without modifying the overall standard Gibbs energy change in the reaction." [] +subset: 3_STAR +synonym: "catalizador" RELATED [ChEBI] +synonym: "catalyseur" RELATED [ChEBI] +synonym: "catalyst" EXACT IUPAC_NAME [IUPAC] +synonym: "Katalysator" RELATED [ChEBI] +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:35224 +name: effector +namespace: chebi_ontology +def: "A small molecule which increases (activator) or decreases (inhibitor) the activity of an (allosteric) enzyme by binding to the enzyme at the regulatory site (which is different from the substrate-binding catalytic site)." [] +subset: 3_STAR +synonym: "effector" EXACT IUPAC_NAME [IUPAC] +synonym: "enzyme modulator" RELATED [ChEBI] +xref: Wikipedia:Effector_(biology) +is_a: CHEBI:52206 ! biochemical role + +[Term] +id: CHEBI:35225 +name: buffer +namespace: chebi_ontology +def: "Any substance or mixture of substances that, in solution (typically aqueous), resists change in pH upon addition of small amounts of acid or base." [] +subset: 3_STAR +synonym: "buffer compound" RELATED [ChEBI] +synonym: "buffer compounds" RELATED [ChEBI] +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:35230 +name: fossil fuel +namespace: chebi_ontology +def: "A fuel such as coal, oil and natural gas which has formed over many years through the decomposition of deposited vegetation which was under extreme pressure of an overburden of earth." [] +subset: 3_STAR +synonym: "fossil fuel" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33292 ! fuel + +[Term] +id: CHEBI:35233 +name: tungsten coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "tungsten coordination compounds" RELATED [ChEBI] +synonym: "tungsten coordination entities" RELATED [ChEBI] +synonym: "tungsten coordination entity" EXACT [ChEBI] +is_a: CHEBI:33742 ! tungsten molecular entity +is_a: CHEBI:33861 ! transition element coordination entity + +[Term] +id: CHEBI:35235 +name: L-cysteine zwitterion +namespace: chebi_ontology +subset: 3_STAR +synonym: "(2R)-2-ammonio-3-mercaptopropanoate" RELATED [ChEBI] +synonym: "(2R)-2-ammonio-3-sulfanylpropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "121.020" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "121.15922" RELATED MASS [ChEBI] +synonym: "[NH3+][C@@H](CS)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C3H7NO2S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-cysteine" RELATED [UniProt] +synonym: "L-cysteine zwitterion" EXACT [IUPAC] +synonym: "XUJNEKJLAYXESH-REOHCLBHSA-N" RELATED InChIKey [ChEBI] +xref: Gmelin:49993 "Gmelin" +is_a: CHEBI:35237 ! cysteine zwitterion +relationship: is_conjugate_acid_of CHEBI:32442 ! L-cysteinate(1-) +relationship: is_conjugate_base_of CHEBI:32445 ! L-cysteinium +relationship: is_enantiomer_of CHEBI:35236 ! D-cysteine zwitterion +relationship: is_tautomer_of CHEBI:17561 ! L-cysteine + +[Term] +id: CHEBI:35236 +name: D-cysteine zwitterion +namespace: chebi_ontology +subset: 3_STAR +synonym: "(2S)-2-ammonio-3-mercaptopropanoate" RELATED [ChEBI] +synonym: "(2S)-2-ammonio-3-sulfanylpropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "121.020" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "121.15922" RELATED MASS [ChEBI] +synonym: "[NH3+][C@H](CS)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C3H7NO2S" RELATED FORMULA [ChEBI] +synonym: "D-cysteine zwitterion" EXACT [IUPAC] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "XUJNEKJLAYXESH-UWTATZPHSA-N" RELATED InChIKey [ChEBI] +xref: Gmelin:2352354 "Gmelin" +is_a: CHEBI:35237 ! cysteine zwitterion +relationship: is_conjugate_acid_of CHEBI:32449 ! D-cysteinate(1-) +relationship: is_conjugate_base_of CHEBI:32451 ! D-cysteinium +relationship: is_enantiomer_of CHEBI:35235 ! L-cysteine zwitterion +relationship: is_tautomer_of CHEBI:16375 ! D-cysteine + +[Term] +id: CHEBI:35237 +name: cysteine zwitterion +namespace: chebi_ontology +subset: 3_STAR +synonym: "(+)H3N-CH(CH2SH)-COO(-)" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "121.020" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "121.15922" RELATED MASS [ChEBI] +synonym: "2-ammonio-3-mercaptopropanoate" RELATED [ChEBI] +synonym: "2-ammonio-3-sulfanylpropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "[NH3+]C(CS)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C3H7NO2S" RELATED FORMULA [ChEBI] +synonym: "cysteine" RELATED [UniProt] +synonym: "cysteine zwitterion" EXACT [IUPAC] +synonym: "InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)" RELATED InChI [ChEBI] +synonym: "XUJNEKJLAYXESH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Gmelin:49992 "Gmelin" +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_conjugate_acid_of CHEBI:32456 ! cysteinate(1-) +relationship: is_conjugate_base_of CHEBI:32458 ! cysteinium +relationship: is_tautomer_of CHEBI:15356 ! cysteine + +[Term] +id: CHEBI:35238 +name: amino acid zwitterion +namespace: chebi_ontology +def: "The zwitterionic form of an amino acid having a negatively charged carboxyl group and a positively charged amino group." [] +subset: 3_STAR +synonym: "amino acid zwitterion" EXACT [ChEBI] +is_a: CHEBI:27369 ! zwitterion + +[Term] +id: CHEBI:35243 +name: serine zwitterion +namespace: chebi_ontology +def: "An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amnio group of serine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "105.043" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "105.09262" RELATED MASS [ChEBI] +synonym: "2-ammonio-3-hydroxypropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "[NH3+]C(CO)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C3H7NO3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)" RELATED InChI [ChEBI] +synonym: "MTCFGRXMJLQNBG-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "serine zwitterion" EXACT [IUPAC] +xref: Beilstein:3935647 "Beilstein" +xref: Gmelin:2060272 "Gmelin" +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_tautomer_of CHEBI:17822 ! serine + +[Term] +id: CHEBI:35247 +name: D-serine zwitterion +namespace: chebi_ontology +def: "A serine zwitterion obtained by transfer of a proton from the carboxy to the amino group of D-serine." [] +subset: 3_STAR +synonym: "(2R)-2-ammonio-3-hydroxypropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "105.043" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "105.09262" RELATED MASS [ChEBI] +synonym: "[NH3+][C@H](CO)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C3H7NO3" RELATED FORMULA [ChEBI] +synonym: "D-serine" RELATED [UniProt] +synonym: "D-serine zwitterion" EXACT [IUPAC] +synonym: "InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "MTCFGRXMJLQNBG-UWTATZPHSA-N" RELATED InChIKey [ChEBI] +xref: MetaCyc:D-SERINE +is_a: CHEBI:35243 ! serine zwitterion +relationship: is_enantiomer_of CHEBI:33384 ! L-serine zwitterion +relationship: is_tautomer_of CHEBI:16523 ! D-serine + +[Term] +id: CHEBI:35267 +name: quaternary ammonium ion +namespace: chebi_ontology +alt_id: CHEBI:26470 +alt_id: CHEBI:8693 +def: "A derivative of ammonium, NH4(+), in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "14.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "14.00670" RELATED MASS [ChEBI] +synonym: "[*][N+]([*])([*])[*]" RELATED SMILES [ChEBI] +synonym: "NR4" RELATED FORMULA [ChEBI] +synonym: "Quaternary amine" RELATED [KEGG_COMPOUND] +synonym: "quaternary ammonium" RELATED [UniProt] +synonym: "quaternary ammonium ion" EXACT IUPAC_NAME [IUPAC] +synonym: "quaternary ammonium ions" RELATED [ChEBI] +xref: KEGG:C06703 +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:35274 ! ammonium ion +relationship: has_parent_hydride CHEBI:28938 ! ammonium + +[Term] +id: CHEBI:35273 +name: quaternary ammonium salt +namespace: chebi_ontology +alt_id: CHEBI:26468 +alt_id: CHEBI:35268 +def: "Derivatives of ammonium compounds, (NH4(+))Y(-), in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups." [] +subset: 3_STAR +synonym: "quaternary ammonium compound" RELATED [ChEBI] +synonym: "quaternary ammonium compounds" EXACT IUPAC_NAME [IUPAC] +synonym: "quaternary ammonium salt" EXACT [ChEBI] +synonym: "quaternary ammonium salts" RELATED [ChEBI] +is_a: CHEBI:26469 ! quaternary nitrogen compound +is_a: CHEBI:46850 ! organoammonium salt + +[Term] +id: CHEBI:35274 +name: ammonium ion +namespace: chebi_ontology +def: "Ammonium, NH4(+), and derivatives formed by substitution by univalent groups." [] +subset: 3_STAR +synonym: "ammonium ions" RELATED [ChEBI] +synonym: "azanium ions" RELATED [ChEBI] +is_a: CHEBI:33702 ! polyatomic cation +is_a: CHEBI:51143 ! nitrogen molecular entity + +[Term] +id: CHEBI:35275 +name: S-glycosyl compound +namespace: chebi_ontology +alt_id: CHEBI:22048 +alt_id: CHEBI:33577 +def: "A glycosyl compound arising formally from the elimination of water from a glycosidic hydroxy group and a S atom bound to a carbon atom, thus creating a C-S bond." [] +subset: 3_STAR +synonym: "S-glycoside" RELATED [ChEBI] +synonym: "S-glycosides" RELATED [ChEBI] +synonym: "S-glycosyl compound" EXACT [ChEBI] +synonym: "S-glycosyl compounds" RELATED [ChEBI] +synonym: "thioglycoside" RELATED [JCBN] +synonym: "thioglycosides" RELATED [JCBN] +is_a: CHEBI:59793 ! monothioacetal +is_a: CHEBI:63161 ! glycosyl compound +is_a: CHEBI:73754 ! thiosugar + +[Term] +id: CHEBI:35276 +name: ammonium compound +namespace: chebi_ontology +def: "Compounds (NH4(+))Y(-) and derivatives, in which one or more of the hydrogens bonded to nitrogen have been replaced with univalent groups." [] +subset: 3_STAR +synonym: "ammonium compounds" RELATED [ChEBI] +synonym: "ammonium compounds" RELATED [IUPAC] +synonym: "azanium compounds" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:51143 ! nitrogen molecular entity +relationship: has_part CHEBI:35274 ! ammonium ion + +[Term] +id: CHEBI:35281 +name: onium betaine +namespace: chebi_ontology +def: "Neutral molecules having charge-separated forms with an onium atom which bears no hydrogen atoms and that is not adjacent to the anionic atom." [] +subset: 3_STAR +synonym: "betaines" EXACT IUPAC_NAME [IUPAC] +synonym: "onium betaines" RELATED [ChEBI] +is_a: CHEBI:27369 ! zwitterion + +[Term] +id: CHEBI:35282 +name: sulfonium betaine +namespace: chebi_ontology +def: "Neutral molecules having charge-separated forms with an sulfonium atom which bears no hydrogen atoms and that is not adjacent to the anionic atom." [] +subset: 3_STAR +synonym: "sulfonium betaines" RELATED [ChEBI] +is_a: CHEBI:26830 ! sulfonium compound +is_a: CHEBI:35281 ! onium betaine + +[Term] +id: CHEBI:35284 +name: ammonium betaine +namespace: chebi_ontology +def: "Any neutral molecule having charge-separated forms with a quaternary ammonium atom which bears no hydrogen atoms and that is not adjacent to the anionic atom." [] +subset: 3_STAR +synonym: "ammonium betaines" RELATED [ChEBI] +is_a: CHEBI:26469 ! quaternary nitrogen compound +is_a: CHEBI:35281 ! onium betaine + +[Term] +id: CHEBI:35286 +name: iminium ion +namespace: chebi_ontology +def: "Cations of structure R2C=N(+)R2." [] +subset: 3_STAR +synonym: "iminium cations" RELATED [ChEBI] +synonym: "iminium ion" EXACT [ChEBI] +synonym: "iminium ions" RELATED [ChEBI] +is_a: CHEBI:25697 ! organic cation + +[Term] +id: CHEBI:35293 +name: fused compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "fused compounds" RELATED [ChEBI] +synonym: "fused polycyclic compounds" RELATED [ChEBI] +synonym: "fused-ring polycyclic compound" RELATED [ChEBI] +synonym: "fused-ring polycyclic compounds" RELATED [ChEBI] +synonym: "polycyclic fused-ring compounds" RELATED [ChEBI] +is_a: CHEBI:33635 ! polycyclic compound + +[Term] +id: CHEBI:35294 +name: carbopolycyclic compound +namespace: chebi_ontology +def: "A polyclic compound in which all of the ring members are carbon atoms." [] +subset: 3_STAR +synonym: "carbopolycyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33598 ! carbocyclic compound +is_a: CHEBI:35295 ! homopolycyclic compound + +[Term] +id: CHEBI:35295 +name: homopolycyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "homopolycyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33597 ! homocyclic compound +is_a: CHEBI:33635 ! polycyclic compound + +[Term] +id: CHEBI:35296 +name: ortho-fused polycyclic arene +namespace: chebi_ontology +subset: 3_STAR +synonym: "ortho-fused polycyclic arenes" RELATED [ChEBI] +is_a: CHEBI:33848 ! polycyclic arene +is_a: CHEBI:35427 ! ortho-fused polycyclic hydrocarbon + +[Term] +id: CHEBI:35297 +name: acene +namespace: chebi_ontology +def: "A polycyclic aromatic hydrocarbon consisting of fused benzene rings in a rectilinear arrangement." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "178.078" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "178.22920" RELATED MASS [ChEBI] +synonym: "Acen" RELATED [ChEBI] +synonym: "acene" EXACT [IUPAC] +synonym: "acenes" EXACT IUPAC_NAME [IUPAC] +synonym: "Azen" RELATED [ChEBI] +synonym: "C14H10" RELATED FORMULA [ChEBI] +synonym: "polyacenes" RELATED [ChEBI] +is_a: CHEBI:35296 ! ortho-fused polycyclic arene +is_a: CHEBI:51269 ! acenes + +[Term] +id: CHEBI:35313 +name: hexoside +namespace: chebi_ontology +subset: 3_STAR +synonym: "hexoside" EXACT [ChEBI] +synonym: "hexosides" RELATED [ChEBI] +is_a: CHEBI:24400 ! glycoside + +[Term] +id: CHEBI:35341 +name: steroid +namespace: chebi_ontology +alt_id: CHEBI:13687 +alt_id: CHEBI:26768 +alt_id: CHEBI:9263 +def: "Any of naturally occurring compounds and synthetic analogues, based on the cyclopenta[a]phenanthrene carbon skeleton, partially or completely hydrogenated; there are usually methyl groups at C-10 and C-13, and often an alkyl group at C-17. By extension, one or more bond scissions, ring expansions and/or ring contractions of the skeleton may have occurred. Natural steroids are derived biogenetically from squalene, so may be considered as triterpenoids." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "259.243" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "259.450" RELATED MASS [ChEBI] +synonym: "a steroid" RELATED [UniProt] +synonym: "C12C(C3C(C(CC3)*)(C)CC1)CCC4C2(CCCC4)C" RELATED SMILES [ChEBI] +synonym: "C19H31R" RELATED FORMULA [ChEBI] +synonym: "Steroid" EXACT [KEGG_COMPOUND] +synonym: "steroids" EXACT IUPAC_NAME [IUPAC] +xref: KEGG:C00377 +xref: MetaCyc:Steroids +is_a: CHEBI:18059 ! lipid +is_a: CHEBI:51958 ! organic polycyclic compound + +[Term] +id: CHEBI:35342 +name: 17alpha-hydroxy steroid +namespace: chebi_ontology +alt_id: CHEBI:13585 +alt_id: CHEBI:19174 +alt_id: CHEBI:782 +def: "The alpha-stereoisomer of 17-hydroxy steroid." [] +subset: 3_STAR +synonym: "17-alpha-Hydroxysteroid" RELATED [KEGG_COMPOUND] +synonym: "17alpha-hydroxy steroids" RELATED [ChEBI] +xref: KEGG:C03336 +is_a: CHEBI:36838 ! 17-hydroxy steroid + +[Term] +id: CHEBI:35344 +name: 21-hydroxy steroid +namespace: chebi_ontology +alt_id: CHEBI:1300 +alt_id: CHEBI:13596 +alt_id: CHEBI:19803 +subset: 3_STAR +synonym: "21-hydroxy steroids" RELATED [ChEBI] +synonym: "21-Hydroxysteroid" RELATED [KEGG_COMPOUND] +synonym: "21-hydroxysteroids" RELATED [ChEBI] +xref: KEGG:C02506 +is_a: CHEBI:35350 ! hydroxy steroid + +[Term] +id: CHEBI:35346 +name: 11beta-hydroxy steroid +namespace: chebi_ontology +alt_id: CHEBI:13774 +alt_id: CHEBI:19134 +alt_id: CHEBI:738 +def: "Any 11-hydroxy steroid in which the hydroxy group at position 11 has beta- configuration." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "11beta-hydroxy steroids" RELATED [ChEBI] +synonym: "11beta-Hydroxysteroid" RELATED [KEGG_COMPOUND] +synonym: "11beta-hydroxysteroids" RELATED [ChEBI] +synonym: "275.237" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "275.450" RELATED MASS [ChEBI] +synonym: "an 11beta-hydroxysteroid" RELATED [UniProt] +synonym: "C12(CCCCC1CCC3C2[C@H](CC4(C3CCC4*)C)O)C" RELATED SMILES [ChEBI] +synonym: "C19H31OR" RELATED FORMULA [ChEBI] +xref: KEGG:C01058 +is_a: CHEBI:36841 ! 11-hydroxy steroid + +[Term] +id: CHEBI:35350 +name: hydroxy steroid +namespace: chebi_ontology +alt_id: CHEBI:24748 +alt_id: CHEBI:5814 +subset: 3_STAR +synonym: "hydroxy steroids" RELATED [ChEBI] +synonym: "Hydroxysteroid" RELATED [KEGG_COMPOUND] +synonym: "hydroxysteroids" RELATED [ChEBI] +xref: KEGG:C02159 +is_a: CHEBI:33822 ! organic hydroxy compound +is_a: CHEBI:35341 ! steroid + +[Term] +id: CHEBI:35352 +name: organonitrogen compound +namespace: chebi_ontology +def: "Any heteroorganic entity containing at least one carbon-nitrogen bond." [] +subset: 3_STAR +synonym: "organonitrogen compounds" EXACT IUPAC_NAME [IUPAC] +synonym: "organonitrogens" RELATED [ChEBI] +is_a: CHEBI:33285 ! heteroorganic entity +is_a: CHEBI:51143 ! nitrogen molecular entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:35356 +name: dicarboximide +namespace: chebi_ontology +def: "An imide in which the two acyl substituents on nitrogen are carboacyl groups." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "69.993" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[*]N(C([*])=O)C([*])=O" RELATED SMILES [ChEBI] +synonym: "C2NO2R3" RELATED FORMULA [ChEBI] +synonym: "dicarboximides" RELATED [ChEBI] +synonym: "secondary carboxamide" RELATED [ChEBI] +is_a: CHEBI:24782 ! imide +is_a: CHEBI:37622 ! carboxamide + +[Term] +id: CHEBI:35358 +name: sulfonamide +namespace: chebi_ontology +def: "An amide of a sulfonic acid RS(=O)2NR'2." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "77.965" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "78.07100" RELATED MASS [ChEBI] +synonym: "[*]S(=O)(=O)N([*])[*]" RELATED SMILES [ChEBI] +synonym: "NO2SR3" RELATED FORMULA [ChEBI] +synonym: "sulfonamides" EXACT IUPAC_NAME [IUPAC] +synonym: "sulfonamides" RELATED [ChEBI] +xref: PMID:11498380 "Europe PMC" +xref: PMID:2434548 "Europe PMC" +xref: PMID:26811268 "Europe PMC" +xref: PMID:26832216 "Europe PMC" +xref: Wikipedia:Sulfonamide +is_a: CHEBI:33256 ! primary amide +is_a: CHEBI:33552 ! sulfonic acid derivative + +[Term] +id: CHEBI:35359 +name: carboxamidine +namespace: chebi_ontology +def: "Compounds having the structure RC(=NR)NR2. The term is used as a suffix in systematic nomenclature to denote the -C(=NH)NH2 group including its carbon atom." [] +subset: 3_STAR +synonym: "Amidines" RELATED [KEGG_COMPOUND] +synonym: "carboxamidines" EXACT IUPAC_NAME [IUPAC] +synonym: "carboxamidines" RELATED [ChEBI] +xref: KEGG:C06060 +is_a: CHEBI:2634 ! amidine +is_a: CHEBI:35352 ! organonitrogen compound + +[Term] +id: CHEBI:35366 +name: fatty acid +namespace: chebi_ontology +alt_id: CHEBI:13633 +alt_id: CHEBI:24024 +alt_id: CHEBI:4984 +def: "Any aliphatic monocarboxylic acid derived from or contained in esterified form in an animal or vegetable fat, oil or wax." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "44.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "45.01740" RELATED MASS [ChEBI] +synonym: "acide gras" RELATED [ChEBI] +synonym: "acides gras" RELATED [ChemIDplus] +synonym: "acido graso" RELATED [ChEBI] +synonym: "acidos grasos" RELATED [ChEBI] +synonym: "CHO2R" RELATED FORMULA [ChEBI] +synonym: "Fatty acid" EXACT [KEGG_COMPOUND] +synonym: "fatty acids" EXACT IUPAC_NAME [IUPAC] +synonym: "fatty acids" RELATED [ChEBI] +synonym: "Fettsaeure" RELATED [ChEBI] +synonym: "Fettsaeuren" RELATED [ChEBI] +synonym: "OC([*])=O" RELATED SMILES [ChEBI] +xref: KEGG:C00162 +xref: PMID:14287444 "Europe PMC" +xref: PMID:14300208 "Europe PMC" +xref: PMID:14328676 "Europe PMC" +xref: Wikipedia:Fatty_acid +is_a: CHEBI:18059 ! lipid +is_a: CHEBI:25384 ! monocarboxylic acid +relationship: is_conjugate_acid_of CHEBI:28868 ! fatty acid anion +relationship: MCO:0000858 MCO:0000864 ! sucrose 15% carbon source + +[Term] +id: CHEBI:35381 +name: monosaccharide +namespace: chebi_ontology +alt_id: CHEBI:25407 +alt_id: CHEBI:6984 +def: "Parent monosaccharides are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H-[CHOH]n-C(=O)[CHOH]m-H with three or more carbon atoms. The generic term 'monosaccharide' (as opposed to oligosaccharide or polysaccharide) denotes a single unit, without glycosidic connection to other such units. It includes aldoses, dialdoses, aldoketoses, ketoses and diketoses, as well as deoxy sugars, provided that the parent compound has a (potential) carbonyl group." [] +subset: 3_STAR +synonym: "monosacarido" RELATED [ChEBI] +synonym: "monosacaridos" RELATED [IUPAC] +synonym: "Monosaccharid" RELATED [ChEBI] +synonym: "Monosaccharide" EXACT [KEGG_COMPOUND] +synonym: "monosaccharide" EXACT [UniProt] +synonym: "monosaccharides" EXACT IUPAC_NAME [IUPAC] +synonym: "Monosacharid" RELATED [ChEBI] +xref: KEGG:C06698 +is_a: CHEBI:16646 ! carbohydrate +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:35390 +name: galactarate(1-) +namespace: chebi_ontology +def: "A dicarboxylic acid monoanion that is the conjugate base of galactaric acid." [] +subset: 3_STAR +synonym: "(2R,3S,4R,5S)-5-carboxy-2,3,4,5-tetrahydroxypentanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "209.030" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "209.13086" RELATED MASS [ChEBI] +synonym: "C6H9O8" RELATED FORMULA [ChEBI] +synonym: "DSLZVSRJTYRBFB-DUHBMQHGSA-M" RELATED InChIKey [ChEBI] +synonym: "hydrogen meso-galactarate" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C6H10O8/c7-1(3(9)5(11)12)2(8)4(10)6(13)14/h1-4,7-10H,(H,11,12)(H,13,14)/p-1/t1-,2+,3+,4-" RELATED InChI [ChEBI] +synonym: "O[C@H]([C@H](O)[C@@H](O)C([O-])=O)[C@H](O)C(O)=O" RELATED SMILES [ChEBI] +is_a: CHEBI:35695 ! dicarboxylic acid monoanion +is_a: CHEBI:48871 ! galactaric acid anion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:16537 ! galactarate(2-) + +[Term] +id: CHEBI:35391 +name: aspartate(1-) +namespace: chebi_ontology +alt_id: CHEBI:22659 +alt_id: CHEBI:29992 +def: "An alpha-amino-acid anion that is the conjugate base of aspartic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "132.030" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "132.09478" RELATED MASS [ChEBI] +synonym: "2-ammoniobutanedioate" RELATED [IUPAC] +synonym: "2-ammoniosuccinate" RELATED [ChEBI] +synonym: "[NH3+]C(CC([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "aspartate(1-)" EXACT [JCBN] +synonym: "aspartic acid monoanion" RELATED [JCBN] +synonym: "C4H6NO4" RELATED FORMULA [ChEBI] +synonym: "CKLJMWTZIZZHCS-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "hydrogen aspartate" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C4H7NO4/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H,6,7)(H,8,9)/p-1" RELATED InChI [ChEBI] +is_a: CHEBI:132943 ! aspartate +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:29995 ! aspartate(2-) + +[Term] +id: CHEBI:35392 +name: glucarate(1-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "C6H9O8" RELATED FORMULA [ChEBI] +synonym: "hydrogen glucarate" EXACT IUPAC_NAME [IUPAC] +synonym: "saccharate" RELATED [ChEBI] +synonym: "saccharate(1-)" RELATED [ChEBI] +is_a: CHEBI:48914 ! glucaric acid anion +relationship: is_conjugate_acid_of CHEBI:30613 ! glucarate(2-) +relationship: is_conjugate_base_of CHEBI:17301 ! glucaric acid + +[Term] +id: CHEBI:35397 +name: tartrate(1-) +namespace: chebi_ontology +def: "A 3-carboxy-2,3-dihydroxypropanoate that is the conjugate base of tartaric acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "149.07890" RELATED MASS [ChEBI] +synonym: "C4H5O6" RELATED FORMULA [ChEBI] +synonym: "rel-(2R,3R)-3-carboxy-2,3-dihydroxypropanoate" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:48929 ! 3-carboxy-2,3-dihydroxypropanoate +relationship: is_conjugate_acid_of CHEBI:15193 ! tartrate(2-) +relationship: is_conjugate_base_of CHEBI:26849 ! tartaric acid + +[Term] +id: CHEBI:35398 +name: L-tartrate(1-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "(2R,3R)-3-carboxy-2,3-dihydroxypropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "149.009" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "149.07890" RELATED MASS [ChEBI] +synonym: "C4H5O6" RELATED FORMULA [ChEBI] +synonym: "FEWJPZIEWOKRBE-JCYAYHJZSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/p-1/t1-,2-/m1/s1" RELATED InChI [ChEBI] +synonym: "O[C@H]([C@@H](O)C([O-])=O)C(O)=O" RELATED SMILES [ChEBI] +is_a: CHEBI:35397 ! tartrate(1-) +relationship: is_conjugate_acid_of CHEBI:30924 ! L-tartrate(2-) +relationship: is_conjugate_base_of CHEBI:15671 ! L-tartaric acid +relationship: is_enantiomer_of CHEBI:35399 ! D-tartrate(1-) + +[Term] +id: CHEBI:35399 +name: D-tartrate(1-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "(2S,3S)-3-carboxy-2,3-dihydroxypropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "149.009" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "149.07890" RELATED MASS [ChEBI] +synonym: "C4H5O6" RELATED FORMULA [ChEBI] +synonym: "FEWJPZIEWOKRBE-LWMBPPNESA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/p-1/t1-,2-/m0/s1" RELATED InChI [ChEBI] +synonym: "O[C@@H]([C@H](O)C([O-])=O)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:3905888 "Beilstein" +xref: Gmelin:326915 "Gmelin" +xref: MetaCyc:D-TARTRATE +is_a: CHEBI:35397 ! tartrate(1-) +relationship: is_conjugate_acid_of CHEBI:30927 ! D-tartrate(2-) +relationship: is_conjugate_base_of CHEBI:15672 ! D-tartaric acid +relationship: is_enantiomer_of CHEBI:35398 ! L-tartrate(1-) + +[Term] +id: CHEBI:35400 +name: meso-tartrate(1-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "149.009" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "149.07890" RELATED MASS [ChEBI] +synonym: "[H+].O[C@@H]([C@@H](O)C([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C4H5O6" RELATED FORMULA [ChEBI] +synonym: "FEWJPZIEWOKRBE-XIXRPRMCSA-M" RELATED InChIKey [ChEBI] +synonym: "hydrogen (2R,3S)-2,3-dihydroxybutanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/p-1/t1-,2+" RELATED InChI [ChEBI] +synonym: "rel-(2R,3S)-3-carboxy-2,3-dihydroxypropanoate" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:48929 ! 3-carboxy-2,3-dihydroxypropanoate +relationship: is_conjugate_acid_of CHEBI:30928 ! meso-tartrate(2-) +relationship: is_conjugate_base_of CHEBI:15673 ! meso-tartaric acid + +[Term] +id: CHEBI:35405 +name: transition element oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "transition element oxoanions" RELATED [ChEBI] +synonym: "transition metal oxoanion" RELATED [ChEBI] +synonym: "transition metal oxoanions" RELATED [ChEBI] +is_a: CHEBI:24834 ! inorganic anion +is_a: CHEBI:33861 ! transition element coordination entity +is_a: CHEBI:35406 ! oxoanion + +[Term] +id: CHEBI:35406 +name: oxoanion +namespace: chebi_ontology +alt_id: CHEBI:33274 +alt_id: CHEBI:33436 +def: "An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen." [] +subset: 3_STAR +synonym: "oxoacid anions" RELATED [ChEBI] +synonym: "oxoanion" EXACT [ChEBI] +synonym: "oxoanions" RELATED [ChEBI] +is_a: CHEBI:25741 ! oxide +is_a: CHEBI:33273 ! polyatomic anion +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:35410 +name: primary diamine +namespace: chebi_ontology +alt_id: CHEBI:26264 +alt_id: CHEBI:8408 +def: "A primary diamine is a compound derived from a hydrocarbon by replacing two hydrogen atoms by amino groups." [] +subset: 3_STAR +synonym: "32.037" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "H4N2R" RELATED FORMULA [ChEBI] +synonym: "N[*]N" RELATED SMILES [ChEBI] +synonym: "Primary diamine" EXACT [KEGG_COMPOUND] +synonym: "primary diamines" EXACT IUPAC_NAME [IUPAC] +synonym: "primary diamines" RELATED [ChEBI] +xref: KEGG:C02311 +is_a: CHEBI:23666 ! diamine + +[Term] +id: CHEBI:35411 +name: alkane-alpha,omega-diamine +namespace: chebi_ontology +alt_id: CHEBI:10204 +alt_id: CHEBI:13775 +alt_id: CHEBI:13808 +alt_id: CHEBI:22316 +alt_id: CHEBI:2577 +def: "A primary diamine that is ethane or a higher alkane in which a hydrogen of each of the terminal methyl groups has been replaced by an amino group. H2NCH2(CH2)nCH2NH2, where n = 0, 1, 2, etc." [] +subset: 3_STAR +synonym: "(CH2)n.C2H8N2" RELATED FORMULA [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "Alkane-alpha,omega-diamine" EXACT [KEGG_COMPOUND] +synonym: "alkane-alpha,omega-diamines" RELATED [ChEBI] +synonym: "alpha,omega-Diamine" RELATED [KEGG_COMPOUND] +synonym: "H4N2(CH2)n" RELATED FORMULA [KEGG_COMPOUND] +xref: KEGG:C02896 +xref: KEGG:C03687 +is_a: CHEBI:35410 ! primary diamine +is_a: CHEBI:46687 ! diazaalkane +relationship: is_conjugate_base_of CHEBI:70977 ! alkane-alpha,omega-diammonium(2+) + +[Term] +id: CHEBI:35418 +name: N-acetylneuraminate +namespace: chebi_ontology +alt_id: CHEBI:12471 +alt_id: CHEBI:12579 +alt_id: CHEBI:21617 +alt_id: CHEBI:33987 +def: "A ketoaldonate that is the conjugate base of N-acetylneuraminic acid, obtained by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "308.098" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "308.26196" RELATED MASS [ChEBI] +synonym: "5-acetamido-3,5-dideoxy-D-galacto-non-2-ulopyranosonate" EXACT IUPAC_NAME [IUPAC] +synonym: "5-acetamido-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonate" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]1(OC(O)(C[C@H](O)[C@H]1NC(C)=O)C([O-])=O)[C@H](O)[C@H](O)CO" RELATED SMILES [ChEBI] +synonym: "C11H18NO9" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C11H19NO9/c1-4(14)12-7-5(15)2-11(20,10(18)19)21-9(7)8(17)6(16)3-13/h5-9,13,15-17,20H,2-3H2,1H3,(H,12,14)(H,18,19)/p-1/t5-,6+,7+,8+,9+,11?/m0/s1" RELATED InChI [ChEBI] +synonym: "N-acetylneuraminate" EXACT [UniProt] +synonym: "sialate" RELATED [MetaCyc] +synonym: "SQVRNKJHWKZAKO-LUWBGTNYSA-M" RELATED InChIKey [ChEBI] +xref: MetaCyc:N-ACETYLNEURAMINATE +xref: Reaxys:9227329 "Reaxys" +is_a: CHEBI:21619 ! N-acetylneuraminates +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:17012 ! N-acetylneuraminic acid + +[Term] +id: CHEBI:35427 +name: ortho-fused polycyclic hydrocarbon +namespace: chebi_ontology +subset: 3_STAR +synonym: "ortho-fused polycyclic hydrocarbon" EXACT [ChEBI] +synonym: "ortho-fused polycyclic hydrocarbons" RELATED [ChEBI] +is_a: CHEBI:33637 ! ortho-fused compound + +[Term] +id: CHEBI:35438 +name: nickel coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "nickel coordination compounds" RELATED [ChEBI] +synonym: "nickel coordination entities" RELATED [ChEBI] +synonym: "nickel coordination entity" EXACT [ChEBI] +is_a: CHEBI:33748 ! nickel molecular entity + +[Term] +id: CHEBI:35441 +name: antiinfective agent +namespace: chebi_ontology +def: "A substance used in the prophylaxis or therapy of infectious diseases." [] +subset: 3_STAR +synonym: "anti-infective agents" RELATED [ChEBI] +synonym: "anti-infective drugs" RELATED [ChEBI] +synonym: "antiinfective agents" RELATED [ChEBI] +synonym: "antiinfective drug" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:35442 +name: antiparasitic agent +namespace: chebi_ontology +def: "A substance used to treat or prevent parasitic infections." [] +subset: 3_STAR +synonym: "antiparasitic drugs" RELATED [ChEBI] +synonym: "antiparasitics" RELATED [ChEBI] +synonym: "parasiticides" RELATED [ChEBI] +xref: Wikipedia:Antiparasitic +is_a: CHEBI:35441 ! antiinfective agent + +[Term] +id: CHEBI:35443 +name: anthelminthic drug +namespace: chebi_ontology +def: "Substance intended to kill parasitic worms (helminths)." [] +subset: 3_STAR +synonym: "anthelminthic" EXACT IUPAC_NAME [IUPAC] +synonym: "anthelminthics" RELATED [ChEBI] +synonym: "anthelmintic" RELATED [IUPAC] +synonym: "anthelmintics" RELATED [ChEBI] +synonym: "antihelminth" RELATED [ChEBI] +synonym: "antihelmintico" RELATED [ChEBI] +is_a: CHEBI:35442 ! antiparasitic agent + +[Term] +id: CHEBI:35456 +name: cadmium dichloride +namespace: chebi_ontology +def: "A cadmium coordination entity in which cadmium(2+) and Cl(-) ions are present in the ratio 2:1. Although considered to be ionic, it has considerable covalent character to its bonding." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "183.31640" RELATED MASS [ChEBI] +synonym: "183.841" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[CdCl2]" RELATED [MolBase] +synonym: "Caddy" RELATED [ChemIDplus] +synonym: "cadmium chloride" RELATED [ChemIDplus] +synonym: "cadmium dichloride" EXACT IUPAC_NAME [IUPAC] +synonym: "cadmium(2+) chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "cadmium(II) chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "CdCl2" RELATED FORMULA [ChEBI] +synonym: "CdCl2" RELATED [IUPAC] +synonym: "Cl[Cd]Cl" RELATED SMILES [ChEBI] +synonym: "Dichlorocadmium" RELATED [ChemIDplus] +synonym: "InChI=1S/Cd.2ClH/h;2*1H/q+2;;/p-2" RELATED InChI [ChEBI] +synonym: "Kadmiumchlorid" RELATED [NIST_Chemistry_WebBook] +synonym: "YKYOUMDCQGMQQO-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +xref: CAS:10108-64-2 "KEGG COMPOUND" +xref: Gmelin:912918 "Gmelin" +xref: KEGG:C15233 +xref: LINCS:LSM-37028 +xref: MolBase:1667 +xref: PMID:23804459 "Europe PMC" +xref: PMID:25042713 "Europe PMC" +xref: PMID:25509961 "Europe PMC" +xref: PMID:25717432 "Europe PMC" +xref: Wikipedia:Cadmium_chloride +is_a: CHEBI:36565 ! cadmium coordination entity + +[Term] +id: CHEBI:35458 +name: cerium trichloride +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "244.812" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "246.47410" RELATED MASS [ChEBI] +synonym: "[CeCl3]" RELATED [ChEBI] +synonym: "CeCl3" RELATED FORMULA [ChEBI] +synonym: "CeCl3" RELATED [IUPAC] +synonym: "cerium chloride" RELATED [NIST_Chemistry_WebBook] +synonym: "cerium trichloride" EXACT IUPAC_NAME [IUPAC] +synonym: "cerium(3+) chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "cerium(III) chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "cerous chloride" RELATED [ChemIDplus] +synonym: "cerous(III) chloride" RELATED [ChemIDplus] +synonym: "Cl[Ce](Cl)Cl" RELATED SMILES [ChEBI] +synonym: "InChI=1S/Ce.3ClH/h;3*1H/q+3;;;/p-3" RELATED InChI [ChEBI] +synonym: "trichloridocerium" EXACT IUPAC_NAME [IUPAC] +synonym: "VYLVYHXQOHJDJL-UHFFFAOYSA-K" RELATED InChIKey [ChEBI] +xref: CAS:11098-86-5 "ChemIDplus" +xref: CAS:7790-86-5 "ChemIDplus" +xref: colombos:CeCl3 +xref: Gmelin:1828 "Gmelin" +is_a: CHEBI:37262 ! cerium coordination entity + +[Term] +id: CHEBI:35469 +name: antidepressant +namespace: chebi_ontology +def: "Antidepressants are mood-stimulating drugs used primarily in the treatment of affective disorders and related conditions." [] +subset: 3_STAR +synonym: "antidepressant drugs" RELATED [ChEBI] +synonym: "antidepressants" RELATED [ChEBI] +synonym: "thymoanaleptics" RELATED [ChEBI] +synonym: "thymoleptic drugs" RELATED [ChEBI] +synonym: "thymoleptics" RELATED [ChEBI] +is_a: CHEBI:35471 ! psychotropic drug + +[Term] +id: CHEBI:35470 +name: central nervous system drug +namespace: chebi_ontology +def: "A class of drugs producing both physiological and psychological effects through a variety of mechanisms involving the central nervous system." [] +subset: 3_STAR +synonym: "central nervous system agents" RELATED [ChEBI] +synonym: "CNS agent" RELATED [ChEBI] +synonym: "CNS drugs" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:35471 +name: psychotropic drug +namespace: chebi_ontology +def: "A loosely defined grouping of drugs that have effects on psychological function." [] +subset: 3_STAR +synonym: "psychoactive agent" RELATED [ChEBI] +synonym: "psychoactive drugs" RELATED [ChEBI] +synonym: "psychopharmaceuticals" RELATED [ChEBI] +synonym: "psychotropic drugs" RELATED [ChEBI] +xref: Wikipedia:Psychotropic_drug +is_a: CHEBI:35470 ! central nervous system drug + +[Term] +id: CHEBI:35472 +name: anti-inflammatory drug +namespace: chebi_ontology +def: "A substance that reduces or suppresses inflammation." [] +subset: 3_STAR +synonym: "anti-inflammatory drugs" RELATED [ChEBI] +synonym: "antiinflammatory agent" RELATED [ChEBI] +synonym: "antiinflammatory drug" RELATED [ChEBI] +synonym: "antiinflammatory drugs" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug +is_a: CHEBI:67079 ! anti-inflammatory agent + +[Term] +id: CHEBI:35479 +name: alkali metal salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "alkali metal salts" RELATED [ChEBI] +is_a: CHEBI:24866 ! salt +is_a: CHEBI:33296 ! alkali metal molecular entity + +[Term] +id: CHEBI:35480 +name: analgesic +namespace: chebi_ontology +def: "An agent capable of relieving pain without the loss of consciousness or without producing anaesthesia. In addition, analgesic is a role played by a compound which is exhibited by a capability to cause a reduction of pain symptoms." [] +subset: 3_STAR +is_a: CHEBI:23888 ! drug +is_a: CHEBI:52210 ! pharmacological role + +[Term] +id: CHEBI:35481 +name: non-narcotic analgesic +namespace: chebi_ontology +def: "A drug that has principally analgesic, antipyretic and anti-inflammatory actions. Non-narcotic analgesics do not bind to opioid receptors." [] +subset: 3_STAR +is_a: CHEBI:35480 ! analgesic + +[Term] +id: CHEBI:35488 +name: central nervous system depressant +namespace: chebi_ontology +def: "A loosely defined group of drugs that tend to reduce the activity of the central nervous system." [] +subset: 3_STAR +synonym: "central nervous system depressants" RELATED [ChEBI] +synonym: "CNS depressants" RELATED [ChEBI] +is_a: CHEBI:35470 ! central nervous system drug + +[Term] +id: CHEBI:35507 +name: natural product fundamental parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "natural product fundamental parents" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33245 ! organic fundamental parent + +[Term] +id: CHEBI:35508 +name: steroid fundamental parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "steroid fundamental parents" RELATED [ChEBI] +is_a: CHEBI:35341 ! steroid +is_a: CHEBI:35507 ! natural product fundamental parent + +[Term] +id: CHEBI:35519 +name: cholane +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "330.329" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "330.59028" RELATED MASS [ChEBI] +synonym: "[H][C@@]1(CC[C@@]2([H])[C@]3([H])CCC4CCCC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCC" RELATED SMILES [ChEBI] +synonym: "C24H42" RELATED FORMULA [ChEBI] +synonym: "cholane" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C24H42/c1-5-8-17(2)20-12-13-21-19-11-10-18-9-6-7-15-23(18,3)22(19)14-16-24(20,21)4/h17-22H,5-16H2,1-4H3/t17-,18?,19+,20-,21+,22+,23+,24-/m1/s1" RELATED InChI [ChEBI] +synonym: "QSHQKIURKJITMZ-BRPMRXRMSA-N" RELATED InChIKey [ChEBI] +is_a: CHEBI:35508 ! steroid fundamental parent + +[Term] +id: CHEBI:35523 +name: bronchodilator agent +namespace: chebi_ontology +def: "An agent that causes an increase in the expansion of a bronchus or bronchial tubes." [] +subset: 3_STAR +synonym: "bronchodilator" RELATED [ChEBI] +synonym: "bronchodilator agents" RELATED [ChEBI] +synonym: "broncholytic agent" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:35526 +name: hypoglycemic agent +namespace: chebi_ontology +def: "A drug which lowers the blood glucose level." [] +subset: 3_STAR +synonym: "antidiabetic" RELATED [ChEBI] +synonym: "antihyperglycemic" RELATED [ChEBI] +synonym: "antihyperglycemic agent" RELATED [ChEBI] +synonym: "antihyperglycemic agents" RELATED [ChEBI] +synonym: "antihyperglycemic drug" RELATED [ChEBI] +synonym: "antihyperglycemic drugs" RELATED [ChEBI] +synonym: "antihyperglycemics" RELATED [ChEBI] +synonym: "hypoglycemic agents" RELATED [ChEBI] +synonym: "hypoglycemic drug" RELATED [ChEBI] +synonym: "hypoglycemic drugs" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:35544 +name: EC 1.14.99.1 (prostaglandin-endoperoxide synthase) inhibitor +namespace: chebi_ontology +def: "A compound or agent that combines with cyclooxygenases (EC 1.14.99.1) and thereby prevents its substrate-enzyme combination with arachidonic acid and the formation of icosanoids, prostaglandins, and thromboxanes." [] +subset: 3_STAR +synonym: "(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate,hydrogen-donor:oxygen oxidoreductase inhibitor" RELATED [ChEBI] +synonym: "(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate,hydrogen-donor:oxygen oxidoreductase inhibitors" RELATED [ChEBI] +synonym: "(PG)H synthase inhibitor" RELATED [ChEBI] +synonym: "(PG)H synthase inhibitors" RELATED [ChEBI] +synonym: "COX inhibitor" RELATED [ChEBI] +synonym: "cyclooxygenase (EC 1.14.99.1) inhibitor" RELATED [ChEBI] +synonym: "cyclooxygenase (EC 1.14.99.1) inhibitors" RELATED [ChEBI] +synonym: "cyclooxygenase inhibitor" RELATED [ChEBI] +synonym: "cyclooxygenase inhibitors" RELATED [ChEBI] +synonym: "EC 1.14.99.1 (cyclooxygenase) inhibitor" RELATED [ChEBI] +synonym: "EC 1.14.99.1 (cyclooxygenase) inhibitors" RELATED [ChEBI] +synonym: "EC 1.14.99.1 (prostaglandin-endoperoxide synthase) inhibitors" RELATED [ChEBI] +synonym: "EC 1.14.99.1 inhibitor" RELATED [ChEBI] +synonym: "EC 1.14.99.1 inhibitors" RELATED [ChEBI] +synonym: "fatty acid cyclooxygenase inhibitor" RELATED [ChEBI] +synonym: "fatty acid cyclooxygenase inhibitors" RELATED [ChEBI] +synonym: "PG synthetase inhibitor" RELATED [ChEBI] +synonym: "PG synthetase inhibitors" RELATED [ChEBI] +synonym: "prostaglandin endoperoxide synthetase inhibitor" RELATED [ChEBI] +synonym: "prostaglandin endoperoxide synthetase inhibitors" RELATED [ChEBI] +synonym: "prostaglandin G/H synthase inhibitor" RELATED [ChEBI] +synonym: "prostaglandin G/H synthase inhibitors" RELATED [ChEBI] +synonym: "prostaglandin synthase inhibitor" RELATED [ChEBI] +synonym: "prostaglandin synthase inhibitors" RELATED [ChEBI] +synonym: "prostaglandin synthetase inhibitor" RELATED [ChEBI] +synonym: "prostaglandin synthetase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76840 ! EC 1.14.99.* (miscellaneous oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor + +[Term] +id: CHEBI:35545 +name: bipyridine +namespace: chebi_ontology +subset: 3_STAR +synonym: "Bipyridin" RELATED [ChEBI] +synonym: "bipyridine" EXACT IUPAC_NAME [IUPAC] +synonym: "bipyridyl" RELATED [IUPAC] +synonym: "C10H8N2" RELATED FORMULA [ChEBI] +is_a: CHEBI:50511 ! bipyridines + +[Term] +id: CHEBI:35552 +name: heterocyclic organic fundamental parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "heterocyclic fundamental parent" RELATED [ChEBI] +synonym: "heterocyclic organic fundamental parents" RELATED [ChEBI] +synonym: "heterocyclic parent hydrides" EXACT IUPAC_NAME [IUPAC] +synonym: "organic heterocyclic fundamental parents" RELATED [ChEBI] +is_a: CHEBI:33245 ! organic fundamental parent + +[Term] +id: CHEBI:35554 +name: cardiovascular drug +namespace: chebi_ontology +def: "A drug that affects the rate or intensity of cardiac contraction, blood vessel diameter or blood volume." [] +subset: 3_STAR +synonym: "cardiovascular agent" RELATED [ChEBI] +synonym: "cardiovascular drugs" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:35555 +name: mancude organic heteromonocyclic parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "mancude organic heteromonocyclic parents" RELATED [ChEBI] +synonym: "mancude-ring organic heteromonocyclic parents" RELATED [ChEBI] +is_a: CHEBI:25693 ! organic heteromonocyclic compound +is_a: CHEBI:35571 ! mancude organic heterocyclic parent + +[Term] +id: CHEBI:35556 +name: pyrrole +namespace: chebi_ontology +def: "A five-membered monocyclic heteroarene comprising one NH and four CH units which forms the parent compound of the pyrrole group of compounds. Its five-membered ring structure has three tautomers. A 'closed class'." [] +subset: 3_STAR +synonym: "C4H5N" RELATED FORMULA [ChEBI] +synonym: "pyrrole" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:26455 ! pyrroles +is_a: CHEBI:35555 ! mancude organic heteromonocyclic parent + +[Term] +id: CHEBI:35557 +name: 3H-pyrrole +namespace: chebi_ontology +def: "That one of the three tautomers of pyrrole which has the double bonds at positions 1 and 4." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3H-pyrrole" EXACT IUPAC_NAME [IUPAC] +synonym: "67.042" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "67.08924" RELATED MASS [ChEBI] +synonym: "C1C=CN=C1" RELATED SMILES [ChEBI] +synonym: "C4H5N" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H5N/c1-2-4-5-3-1/h1,3-4H,2H2" RELATED InChI [ChEBI] +synonym: "VXIKDBJPBRMXBP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +is_a: CHEBI:35556 ! pyrrole +relationship: is_tautomer_of CHEBI:19203 ! 1H-pyrrole +relationship: is_tautomer_of CHEBI:35558 ! 2H-pyrrole + +[Term] +id: CHEBI:35558 +name: 2H-pyrrole +namespace: chebi_ontology +def: "That one of the three tautomers of pyrrole which has the double bonds at positions 1 and 3." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2H-pyrrole" EXACT IUPAC_NAME [IUPAC] +synonym: "67.042" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "67.08924" RELATED MASS [ChEBI] +synonym: "C1C=CC=N1" RELATED SMILES [ChEBI] +synonym: "C4H5N" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H5N/c1-2-4-5-3-1/h1-3H,4H2" RELATED InChI [ChEBI] +synonym: "JZIBVTUXIVIFGC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1633591 "Beilstein" +is_a: CHEBI:35556 ! pyrrole +relationship: is_tautomer_of CHEBI:19203 ! 1H-pyrrole +relationship: is_tautomer_of CHEBI:35557 ! 3H-pyrrole + +[Term] +id: CHEBI:35559 +name: furan +namespace: chebi_ontology +alt_id: CHEBI:30855 +alt_id: CHEBI:34767 +def: "A monocyclic heteroarene with a structure consisting of a 5-membered ring containing four carbons and one oxygen, with formula C4H4O. It is a toxic, flammable, low-boiling (31degreeC) colourless liquid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,4-epoxy-1,3-butadiene" RELATED [ChemIDplus] +synonym: "68.026" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "68.07400" RELATED MASS [ChEBI] +synonym: "c1ccoc1" RELATED SMILES [ChEBI] +synonym: "C4H4O" RELATED FORMULA [ChEBI] +synonym: "divinylene oxide" RELATED [ChemIDplus] +synonym: "Furan" EXACT [KEGG_COMPOUND] +synonym: "furan" EXACT IUPAC_NAME [IUPAC] +synonym: "furane" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H" RELATED InChI [ChEBI] +synonym: "oxacyclopentadiene" RELATED [ChemIDplus] +synonym: "oxole" RELATED [NIST_Chemistry_WebBook] +synonym: "tetrole" RELATED [ChemIDplus] +synonym: "YLQBMQCUIZJEEH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:103221 "Beilstein" +xref: CAS:110-00-9 "KEGG COMPOUND" +xref: Gmelin:25716 "Gmelin" +xref: HMDB:HMDB13785 +xref: KEGG:C14275 +xref: LINCS:LSM-37156 +xref: PMID:16006568 "Europe PMC" +xref: PMID:17224250 "Europe PMC" +xref: PMID:22079235 "Europe PMC" +xref: PMID:22542513 "Europe PMC" +xref: PMID:22641279 "Europe PMC" +xref: PMID:22865590 "Europe PMC" +xref: PMID:9169064 "Europe PMC" +xref: Reaxys:103221 "Reaxys" +xref: Wikipedia:Furan +is_a: CHEBI:24129 ! furans +is_a: CHEBI:35555 ! mancude organic heteromonocyclic parent +is_a: CHEBI:38179 ! monocyclic heteroarene +relationship: has_role CHEBI:50903 ! carcinogenic agent +relationship: has_role CHEBI:50908 ! hepatotoxic agent +relationship: has_role CHEBI:77523 ! Maillard reaction product + +[Term] +id: CHEBI:35568 +name: mancude ring +namespace: chebi_ontology +def: "Any molecular entity that consists of a ring having (formally) the maximum number of noncumulative double bonds." [] +subset: 3_STAR +synonym: "mancude rings" RELATED [ChEBI] +synonym: "mancude-ring systems" EXACT IUPAC_NAME [IUPAC] +synonym: "mancunide-ring systems" RELATED [IUPAC] +is_a: CHEBI:23367 ! molecular entity + +[Term] +id: CHEBI:35570 +name: mancude organic heterobicyclic parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "mancude organic heterobicyclic parents" RELATED [ChEBI] +synonym: "mancude-ring organic heterobicyclic parents" RELATED [ChEBI] +is_a: CHEBI:27171 ! organic heterobicyclic compound +is_a: CHEBI:35571 ! mancude organic heterocyclic parent + +[Term] +id: CHEBI:35571 +name: mancude organic heterocyclic parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "mancude organic heterocyclic parents" RELATED [ChEBI] +synonym: "mancude-ring organic heterocyclic parents" RELATED [ChEBI] +is_a: CHEBI:35552 ! heterocyclic organic fundamental parent +is_a: CHEBI:35573 ! organic mancude parent + +[Term] +id: CHEBI:35573 +name: organic mancude parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic mancude parents" RELATED [ChEBI] +synonym: "organic mancude-ring parents" RELATED [ChEBI] +is_a: CHEBI:33245 ! organic fundamental parent +is_a: CHEBI:35568 ! mancude ring + +[Term] +id: CHEBI:35580 +name: N-oxide +namespace: chebi_ontology +subset: 3_STAR +synonym: "N-oxide" EXACT [ChEBI] +synonym: "N-oxides" RELATED [ChEBI] +is_a: CHEBI:25741 ! oxide + +[Term] +id: CHEBI:35581 +name: indole +namespace: chebi_ontology +def: "Either of two isomeric forms comprising a benzene ring fused to a pyrrole ring." [] +subset: 3_STAR +synonym: "C8H7N" RELATED FORMULA [ChEBI] +synonym: "indole" EXACT IUPAC_NAME [IUPAC] +xref: colombos:INDOLE +xref: HMDB:HMDB00738 +xref: PMID:24563545 "Europe PMC" +xref: PMID:24695245 "Europe PMC" +xref: Wikipedia:Indole +is_a: CHEBI:24828 ! indoles +is_a: CHEBI:35570 ! mancude organic heterobicyclic parent +is_a: CHEBI:52362 ! ortho-fused heteroarene +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:35584 +name: purine +namespace: chebi_ontology +def: "A heterobicyclic aromatic organic compound comprising a pyrimidine ring fused to an imidazole ring; the parent compound of the purines." [] +subset: 3_STAR +synonym: "C5H4N4" RELATED FORMULA [ChEBI] +synonym: "purine" EXACT IUPAC_NAME [IUPAC] +xref: HMDB:HMDB01366 +xref: KEGG:C15587 +xref: MetaCyc:PURINE +xref: PMID:12865945 "Europe PMC" +xref: PMID:24088627 "Europe PMC" +is_a: CHEBI:26401 ! purines +is_a: CHEBI:35570 ! mancude organic heterobicyclic parent +relationship: has_role CHEBI:78675 ! fundamental metabolite + +[Term] +id: CHEBI:35586 +name: 1H-purine +namespace: chebi_ontology +def: "The 1H-tautomer of purine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "120.044" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "120.11210" RELATED MASS [ChEBI] +synonym: "1H-purine" EXACT [ChEBI] +synonym: "c1nc2c[nH]cnc2n1" RELATED SMILES [ChEBI] +synonym: "C5H4N4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9)" RELATED InChI [ChEBI] +synonym: "KDCGOANMDULRCW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Gmelin:2379911 "Gmelin" +is_a: CHEBI:35584 ! purine +relationship: is_tautomer_of CHEBI:17258 ! 7H-purine +relationship: is_tautomer_of CHEBI:35588 ! 3H-purine +relationship: is_tautomer_of CHEBI:35589 ! 9H-purine + +[Term] +id: CHEBI:35588 +name: 3H-purine +namespace: chebi_ontology +def: "The 3H-tautomer of purine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "120.044" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "120.11222" RELATED MASS [ChEBI] +synonym: "3H-purine" EXACT IUPAC_NAME [IUPAC] +synonym: "c1nc2cnc[nH]c2n1" RELATED SMILES [ChEBI] +synonym: "C5H4N4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9)" RELATED InChI [ChEBI] +synonym: "KDCGOANMDULRCW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: PMID:6149478 "Europe PMC" +xref: PMID:7178185 "Europe PMC" +xref: PMID:7296170 "Europe PMC" +xref: Reaxys:1210196 "Reaxys" +is_a: CHEBI:35584 ! purine +relationship: is_tautomer_of CHEBI:17258 ! 7H-purine +relationship: is_tautomer_of CHEBI:35586 ! 1H-purine +relationship: is_tautomer_of CHEBI:35589 ! 9H-purine + +[Term] +id: CHEBI:35589 +name: 9H-purine +namespace: chebi_ontology +def: "The 9H-tautomer of purine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "120.044" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "120.11222" RELATED MASS [ChEBI] +synonym: "9H-purine" EXACT IUPAC_NAME [IUPAC] +synonym: "9H-purine" EXACT [UniProt] +synonym: "c1ncc2nc[nH]c2n1" RELATED SMILES [ChEBI] +synonym: "C5H4N4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9)" RELATED InChI [ChEBI] +synonym: "KDCGOANMDULRCW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:606899 "Beilstein" +xref: CAS:120-73-0 "NIST Chemistry WebBook" +xref: Gmelin:3120 "Gmelin" +xref: Wikipedia:Purine +is_a: CHEBI:35584 ! purine +relationship: is_tautomer_of CHEBI:17258 ! 7H-purine +relationship: is_tautomer_of CHEBI:35586 ! 1H-purine +relationship: is_tautomer_of CHEBI:35588 ! 3H-purine + +[Term] +id: CHEBI:35604 +name: carbon oxoanion +namespace: chebi_ontology +def: "A negative ion consisting solely of carbon and oxygen atoms, and therefore having the general formula CxOy(n-) for some integers x, y and n." [] +subset: 3_STAR +synonym: "carbon oxoanion" EXACT [ChEBI] +synonym: "carbon oxoanions" RELATED [ChEBI] +synonym: "oxocarbon anion" RELATED [ChEBI] +synonym: "oxocarbon anions" RELATED [ChEBI] +is_a: CHEBI:25696 ! organic anion +is_a: CHEBI:35406 ! oxoanion +is_a: CHEBI:36963 ! organooxygen compound + +[Term] +id: CHEBI:35605 +name: carbon oxoacid +namespace: chebi_ontology +subset: 3_STAR +synonym: "carbon oxoacids" RELATED [ChEBI] +synonym: "oxoacids of carbon" RELATED [ChEBI] +is_a: CHEBI:24833 ! oxoacid +is_a: CHEBI:36963 ! organooxygen compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:35610 +name: antineoplastic agent +namespace: chebi_ontology +def: "A substance that inhibits or prevents the proliferation of neoplasms." [] +subset: 3_STAR +synonym: "anticancer agent" RELATED [ChEBI] +synonym: "anticancer agents" RELATED [ChEBI] +synonym: "antineoplastic" RELATED [ChEBI] +synonym: "antineoplastic agents" RELATED [ChEBI] +synonym: "cytostatic" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:35617 +name: flavouring agent +namespace: chebi_ontology +def: "A food additive that is used to added improve the taste or odour of a food." [] +subset: 3_STAR +synonym: "flavoring agent" RELATED [ChEBI] +synonym: "flavoring agents" RELATED [ChEBI] +synonym: "flavour enhancer" RELATED [ChEBI] +synonym: "flavour enhancers" RELATED [ChEBI] +synonym: "flavouring agents" RELATED [ChEBI] +is_a: CHEBI:64047 ! food additive + +[Term] +id: CHEBI:35618 +name: aromatic ether +namespace: chebi_ontology +def: "Any ether in which the oxygen is attached to at least one aryl substituent." [] +subset: 3_STAR +is_a: CHEBI:25698 ! ether +is_a: CHEBI:33659 ! organic aromatic compound + +[Term] +id: CHEBI:35620 +name: vasodilator agent +namespace: chebi_ontology +def: "A drug used to cause dilation of the blood vessels." [] +subset: 3_STAR +synonym: "vasodilator" RELATED [ChEBI] +synonym: "vasodilator agents" RELATED [ChEBI] +is_a: CHEBI:35554 ! cardiovascular drug + +[Term] +id: CHEBI:35623 +name: anticonvulsant +namespace: chebi_ontology +def: "A drug used to prevent seizures or reduce their severity." [] +subset: 3_STAR +synonym: "anti-convulsant" RELATED [ChEBI] +synonym: "anti-convulsants" RELATED [ChEBI] +synonym: "anti-convulsive agent" RELATED [ChEBI] +synonym: "anti-convulsive agents" RELATED [ChEBI] +synonym: "anticonvulsants" RELATED [ChEBI] +synonym: "anticonvulsive agent" RELATED [ChEBI] +synonym: "anticonvulsive agents" RELATED [ChEBI] +synonym: "antiepileptic" RELATED [ChEBI] +synonym: "antiepileptics" RELATED [ChEBI] +synonym: "Antiepileptika" RELATED [ChEBI] +synonym: "Antiepileptikum" RELATED [ChEBI] +synonym: "antiepileptique" RELATED [ChEBI] +synonym: "antiepileptiques" RELATED [ChEBI] +synonym: "Antikonvulsiva" RELATED [ChEBI] +synonym: "Antikonvulsivum" RELATED [ChEBI] +is_a: CHEBI:35488 ! central nervous system depressant + +[Term] +id: CHEBI:35627 +name: beta-lactam +namespace: chebi_ontology +alt_id: CHEBI:10426 +alt_id: CHEBI:22845 +def: "A lactam in which the amide bond is contained within a four-membered ring, which includes the amide nitrogen and the carbonyl carbon." [] +subset: 3_STAR +synonym: "beta-Lactam" EXACT [KEGG_COMPOUND] +synonym: "beta-lactams" RELATED [ChEBI] +xref: KEGG:C01866 +xref: Wikipedia:Beta-lactam +is_a: CHEBI:24995 ! lactam + +[Term] +id: CHEBI:35662 +name: terpenoid fundamental parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "terpenoid fundamental parents" RELATED [ChEBI] +is_a: CHEBI:35507 ! natural product fundamental parent + +[Term] +id: CHEBI:35674 +name: antihypertensive agent +namespace: chebi_ontology +def: "Any drug used in the treatment of acute or chronic vascular hypertension regardless of pharmacological mechanism." [] +subset: 3_STAR +synonym: "antihypertensive" RELATED [ChEBI] +synonym: "antihypertensive agents" RELATED [ChEBI] +synonym: "antihypertensive drug" RELATED [ChEBI] +synonym: "antihypertensive drugs" RELATED [ChEBI] +is_a: CHEBI:35554 ! cardiovascular drug + +[Term] +id: CHEBI:35692 +name: dicarboxylic acid +namespace: chebi_ontology +alt_id: CHEBI:23692 +alt_id: CHEBI:36172 +alt_id: CHEBI:4501 +def: "Any carboxylic acid containing two carboxy groups." [] +subset: 3_STAR +synonym: "Dicarboxylic acid" EXACT [KEGG_COMPOUND] +synonym: "dicarboxylic acids" RELATED [ChEBI] +xref: KEGG:C02028 +is_a: CHEBI:131927 ! dicarboxylic acids and O-substituted derivatives +is_a: CHEBI:33575 ! carboxylic acid +relationship: is_conjugate_acid_of CHEBI:35693 ! dicarboxylic acid anion + +[Term] +id: CHEBI:35693 +name: dicarboxylic acid anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "dicarboxylic acid anion" EXACT [ChEBI] +synonym: "dicarboxylic acid anions" RELATED [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion +relationship: is_conjugate_base_of CHEBI:35692 ! dicarboxylic acid + +[Term] +id: CHEBI:35695 +name: dicarboxylic acid monoanion +namespace: chebi_ontology +def: "Any dicarboxylic acid anion that is a monoanion obtained by the deprotonation of only one of the carboxy groups of the dicarboxylic acid." [] +subset: 3_STAR +synonym: "dicarboxylic acid monoanions" RELATED [ChEBI] +is_a: CHEBI:35693 ! dicarboxylic acid anion + +[Term] +id: CHEBI:35701 +name: ester +namespace: chebi_ontology +alt_id: CHEBI:23960 +alt_id: CHEBI:4859 +def: "A compound formally derived from an oxoacid RkE(=O)l(OH)m (l > 0) and an alcohol, phenol, heteroarenol, or enol by linking with formal loss of water from an acidic hydroxy group of the former and a hydroxy group of the latter." [] +subset: 3_STAR +synonym: "Ester" EXACT [KEGG_COMPOUND] +synonym: "esters" RELATED [ChEBI] +xref: KEGG:C00287 +xref: Wikipedia:Ester +is_a: CHEBI:36963 ! organooxygen compound + +[Term] +id: CHEBI:35703 +name: xenobiotic +namespace: chebi_ontology +alt_id: CHEBI:10074 +alt_id: CHEBI:27333 +def: "A xenobiotic (Greek, xenos \"foreign\"; bios \"life\") is a compound that is foreign to a living organism. Principal xenobiotics include: drugs, carcinogens and various compounds that have been introduced into the environment by artificial means." [] +subset: 3_STAR +synonym: "Xenobiotic" EXACT [KEGG_COMPOUND] +synonym: "xenobiotic" EXACT IUPAC_NAME [IUPAC] +synonym: "xenobiotic compounds" RELATED [ChEBI] +synonym: "xenobiotics" EXACT IUPAC_NAME [IUPAC] +xref: KEGG:C06708 +xref: Wikipedia:Xenobiotic +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:35711 +name: ursane +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "412.407" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "412.73388" RELATED MASS [ChEBI] +synonym: "[H][C@]12CC[C@]3([H])[C@@]4(C)CCCC(C)(C)[C@]4([H])CC[C@@]3(C)[C@]1(C)CC[C@@]1(C)CC[C@@H](C)[C@H](C)[C@@]21[H]" RELATED SMILES [ChEBI] +synonym: "C30H52" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C30H52/c1-20-12-16-27(5)18-19-29(7)22(25(27)21(20)2)10-11-24-28(6)15-9-14-26(3,4)23(28)13-17-30(24,29)8/h20-25H,9-19H2,1-8H3/t20-,21+,22-,23+,24-,25+,27-,28+,29-,30-/m1/s1" RELATED InChI [ChEBI] +synonym: "OOTXFYSZXCPMPG-BMYLZFHVSA-N" RELATED InChIKey [ChEBI] +synonym: "ursane" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:3207208 "Beilstein" +is_a: CHEBI:35191 ! triterpene +is_a: CHEBI:35662 ! terpenoid fundamental parent + +[Term] +id: CHEBI:35715 +name: nitro compound +namespace: chebi_ontology +def: "A compound having a nitro group, -NO2 (free valence on nitrogen), which may be attached to carbon, nitrogen (as in nitramines), or oxygen (as in nitrates), among other elements (in the absence of specification, C-nitro compounds are usually implied)." [] +subset: 3_STAR +synonym: "nitro compounds" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:51143 ! nitrogen molecular entity +relationship: has_part CHEBI:29785 ! nitro group + +[Term] +id: CHEBI:35716 +name: C-nitro compound +namespace: chebi_ontology +def: "A nitro compound having the nitro group (-NO2) attached to a carbon atom." [] +subset: 3_STAR +synonym: "C-nitro compounds" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:35715 ! nitro compound +relationship: is_tautomer_of CHEBI:136622 ! aci-nitro compound + +[Term] +id: CHEBI:35717 +name: sedative +namespace: chebi_ontology +def: "A central nervous system depressant used to induce drowsiness or sleep or to reduce psychological excitement or anxiety." [] +subset: 3_STAR +synonym: "hypnotics" RELATED [ChEBI] +synonym: "hypnotics and sedatives" RELATED [ChEBI] +synonym: "sedative drug" RELATED [ChEBI] +synonym: "sedatives" RELATED [ChEBI] +synonym: "sedatives and hypnotics" RELATED [ChEBI] +is_a: CHEBI:35488 ! central nervous system depressant + +[Term] +id: CHEBI:35718 +name: antifungal agent +namespace: chebi_ontology +def: "An antimicrobial agent that destroys fungi by suppressing their ability to grow or reproduce." [] +subset: 3_STAR +synonym: "antifungal" RELATED [ChEBI] +synonym: "antifungal agents" RELATED [ChEBI] +synonym: "antifungal drug" RELATED [ChEBI] +synonym: "antifungal drugs" RELATED [ChEBI] +synonym: "antifungals" RELATED [ChEBI] +is_a: CHEBI:33281 ! antimicrobial agent + +[Term] +id: CHEBI:35720 +name: enrofloxacin +namespace: chebi_ontology +def: "A quinolinemonocarboxylic acid that is 1,4-dihydroquinoline-3-carboxylic acid substituted by an oxo group at position 4, a fluoro group at position 6, a cyclopropyl group at position 1 and a 4-ethylpiperazin-1-yl group at position 7. It is a veterinary antibacterial agent used for the treatment of pets." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-cyclopropyl-7-(4-ethylpiperazin-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "359.165" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "359.395" RELATED MASS [ChEBI] +synonym: "Baytril" RELATED [ChemIDplus] +synonym: "C19H22FN3O3" RELATED FORMULA [ChEBI] +synonym: "C1=C(C(=CC2=C1N(C=C(C2=O)C(=O)O)C3CC3)F)N4CCN(CC4)CC" RELATED SMILES [ChEBI] +synonym: "Enrofloxacin" EXACT [ChemIDplus] +synonym: "InChI=1S/C19H22FN3O3/c1-2-21-5-7-22(8-6-21)17-10-16-13(9-15(17)20)18(24)14(19(25)26)11-23(16)12-3-4-12/h9-12H,2-8H2,1H3,(H,25,26)" RELATED InChI [ChEBI] +synonym: "SPFYMRJSYKOXGV-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:93106-60-6 "ChemIDplus" +xref: colombos:ENROFLOXACINE +xref: Drug_Central:1017 "DrugCentral" +xref: HMDB:HMDB29861 +xref: KEGG:D02473 +xref: LINCS:LSM-3709 +xref: Patent:KR20130080422 +xref: Patent:RU2491922 +xref: Patent:US4659603 +xref: PMID:15967281 "Europe PMC" +xref: PMID:19376344 "Europe PMC" +xref: PMID:24380725 "Europe PMC" +xref: PMID:26963935 "Europe PMC" +xref: PMID:8828132 "Europe PMC" +xref: Reaxys:5307824 "Reaxys" +xref: Wikipedia:Enrofloxacin +is_a: CHEBI:23765 ! quinolone +is_a: CHEBI:26512 ! quinolinemonocarboxylic acid +is_a: CHEBI:37143 ! organofluorine compound +is_a: CHEBI:46845 ! N-alkylpiperazine +is_a: CHEBI:46848 ! N-arylpiperazine +is_a: CHEBI:51454 ! cyclopropanes +relationship: has_role CHEBI:33282 ! antibacterial agent +relationship: has_role CHEBI:35610 ! antineoplastic agent + +[Term] +id: CHEBI:35728 +name: lanthanoid coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "lanthanoid coordination compounds" RELATED [ChEBI] +synonym: "lanthanoid coordination entities" RELATED [ChEBI] +synonym: "lanthanoid coordination entity" EXACT [ChEBI] +is_a: CHEBI:33775 ! lanthanoid molecular entity + +[Term] +id: CHEBI:35735 +name: dicarboxylic acid monoamide +namespace: chebi_ontology +alt_id: CHEBI:13210 +alt_id: CHEBI:23691 +alt_id: CHEBI:6976 +subset: 3_STAR +synonym: "dicarboxylic acid monoamide" EXACT [UniProt] +synonym: "dicarboxylic acid monoamides" RELATED [ChEBI] +is_a: CHEBI:23690 ! dicarboxylic acid amide +relationship: is_conjugate_acid_of CHEBI:77450 ! dicarboxylic acid monoamide(1-) + +[Term] +id: CHEBI:35742 +name: tetracarboxylic acid +namespace: chebi_ontology +def: "An oxoacid containing four carboxy groups." [] +subset: 3_STAR +synonym: "C4H4O8R" RELATED FORMULA [ChEBI] +synonym: "tetracarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:33575 ! carboxylic acid + +[Term] +id: CHEBI:35753 +name: tricarboxylic acid anion +namespace: chebi_ontology +def: "Any anion of a tricarboxylic acid formed by deprotonation of at least one carboxy group." [] +subset: 3_STAR +synonym: "tricarboxylic acid anion" EXACT [ChEBI] +synonym: "tricarboxylic acid anions" RELATED [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion +relationship: is_conjugate_base_of CHEBI:27093 ! tricarboxylic acid + +[Term] +id: CHEBI:35757 +name: monocarboxylic acid anion +namespace: chebi_ontology +alt_id: CHEBI:13657 +alt_id: CHEBI:25382 +alt_id: CHEBI:3407 +def: "A carboxylic acid anion formed when the carboxy group of a monocarboxylic acid is deprotonated." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "43.990" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "44.01000" RELATED MASS [ChEBI] +synonym: "[O-]C([*])=O" RELATED SMILES [ChEBI] +synonym: "a monocarboxylate" RELATED [UniProt] +synonym: "Carboxylate" RELATED [KEGG_COMPOUND] +synonym: "CO2R" RELATED FORMULA [ChEBI] +synonym: "Monocarboxylate" RELATED [KEGG_COMPOUND] +synonym: "monocarboxylates" RELATED [ChEBI] +synonym: "monocarboxylic acid anions" RELATED [ChEBI] +xref: KEGG:C00060 +is_a: CHEBI:29067 ! carboxylic acid anion +relationship: is_conjugate_base_of CHEBI:25384 ! monocarboxylic acid +property_value: http://purl.obolibrary.org/obo/chebi/formula "CO2R" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/mass "44.01000" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "43.990" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/smiles "[O-]C([*])=O" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:35776 +name: arsenic oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "arsenic oxoanion" EXACT [ChEBI] +synonym: "arsenic oxoanions" RELATED [ChEBI] +synonym: "oxoanions of arsenic" RELATED [ChEBI] +is_a: CHEBI:22632 ! arsenic molecular entity +is_a: CHEBI:33459 ! pnictogen oxoanion + +[Term] +id: CHEBI:35780 +name: phosphate ion +namespace: chebi_ontology +def: "A phosphorus oxoanion that is the conjugate base of phosphoric acid." [] +subset: 3_STAR +synonym: "phosphate" RELATED [ChEBI] +synonym: "phosphate ions" RELATED [ChEBI] +synonym: "Pi" RELATED [ChEBI] +xref: colombos:PHOSPHATE +is_a: CHEBI:33461 ! phosphorus oxoanion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:26078 ! phosphoric acid + +[Term] +id: CHEBI:35789 +name: oxo steroid +namespace: chebi_ontology +alt_id: CHEBI:24979 +alt_id: CHEBI:25804 +subset: 3_STAR +synonym: "keto steroids" RELATED [ChEBI] +synonym: "ketosteroids" RELATED [ChEBI] +synonym: "oxo steroids" RELATED [ChEBI] +synonym: "oxosteroids" RELATED [ChEBI] +is_a: CHEBI:17087 ! ketone +is_a: CHEBI:35341 ! steroid + +[Term] +id: CHEBI:35790 +name: oxazole +namespace: chebi_ontology +def: "An azole based on a five-membered heterocyclic aromatic skeleton containing one N and one O atom." [] +subset: 3_STAR +synonym: "oxazole" EXACT [ChEBI] +synonym: "oxazoles" RELATED [ChEBI] +is_a: CHEBI:38104 ! oxacycle +is_a: CHEBI:68452 ! azole + +[Term] +id: CHEBI:35800 +name: nitroso compound +namespace: chebi_ontology +def: "Compounds having the nitroso group, -NO, attached to carbon, or to another element, most commonly nitrogen or oxygen." [] +subset: 3_STAR +synonym: "nitroso compounds" RELATED [ChEBI] +is_a: CHEBI:51143 ! nitrogen molecular entity +relationship: has_part CHEBI:35801 ! nitroso group + +[Term] +id: CHEBI:35801 +name: nitroso group +namespace: chebi_ontology +subset: 3_STAR +synonym: "-N=O" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "29.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "30.00614" RELATED MASS [ChEBI] +synonym: "nitroso" EXACT IUPAC_NAME [IUPAC] +synonym: "NO" RELATED FORMULA [ChEBI] +synonym: "O=N-" RELATED [IUPAC] +is_a: CHEBI:33246 ! inorganic group +is_a: CHEBI:51144 ! nitrogen group + +[Term] +id: CHEBI:35804 +name: citrate(1-) +namespace: chebi_ontology +def: "A tricarboxylic acid monoanion that is the conjugate base of citric acid, obtained by deprotonation of one of the three carboxy groups." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "191.11558" RELATED MASS [ChEBI] +synonym: "C6H7O7" RELATED FORMULA [ChEBI] +synonym: "dihydrogen citrate" EXACT IUPAC_NAME [IUPAC] +synonym: "H2cit" RELATED [IUPAC] +synonym: "H2cit(-)" RELATED [ChEBI] +is_a: CHEBI:133748 ! citrate anion +is_a: CHEBI:36299 ! tricarboxylic acid monoanion +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:35808 ! citrate(2-) + +[Term] +id: CHEBI:35808 +name: citrate(2-) +namespace: chebi_ontology +def: "A tricarboxylic acid dianion obtained by deprotonation of two of the three carboxy groups of citric acid." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "190.10764" RELATED MASS [ChEBI] +synonym: "C6H6O7" RELATED FORMULA [ChEBI] +synonym: "Hcit" RELATED [IUPAC] +synonym: "Hcit(2-)" RELATED [ChEBI] +synonym: "hydrogen citrate" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:133748 ! citrate anion +is_a: CHEBI:36300 ! tricarboxylic acid dianion +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:16947 ! citrate(3-) +relationship: is_conjugate_base_of CHEBI:35804 ! citrate(1-) + +[Term] +id: CHEBI:35816 +name: leprostatic drug +namespace: chebi_ontology +def: "A substance that suppresses Mycobacterium leprae, ameliorates the clinical manifestations of leprosy, and/or reduces the incidence and severity of leprous reactions." [] +subset: 3_STAR +synonym: "leprostatic" RELATED [ChEBI] +synonym: "leprostatic agent" RELATED [ChEBI] +synonym: "leprostatic drugs" RELATED [ChEBI] +is_a: CHEBI:64912 ! antimycobacterial drug + +[Term] +id: CHEBI:35820 +name: antiprotozoal drug +namespace: chebi_ontology +def: "Any antimicrobial drug which is used to treat or prevent protozoal infections." [] +subset: 3_STAR +synonym: "antiprotozoal agent" RELATED [ChEBI] +synonym: "antiprotozoal agents" RELATED [ChEBI] +synonym: "antiprotozoal drugs" RELATED [ChEBI] +xref: Wikipedia:Antiprotozoal_agent +is_a: CHEBI:35442 ! antiparasitic agent +is_a: CHEBI:36043 ! antimicrobial drug + +[Term] +id: CHEBI:35842 +name: antirheumatic drug +namespace: chebi_ontology +def: "A drug used to treat rheumatoid arthritis." [] +subset: 3_STAR +synonym: "anti-rheumatic drugs" RELATED [ChEBI] +synonym: "antirheumatic agent" RELATED [ChEBI] +synonym: "antirheumatic drugs" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:35856 +name: lipoxygenase inhibitor +namespace: chebi_ontology +def: "A compound or agent that combines with lipoxygenase and thereby prevents its substrate-enzyme combination with arachidonic acid and the formation of the icosanoid products hydroxyicosatetraenoic acid and various leukotrienes." [] +subset: 3_STAR +synonym: "lipooxygenase inhibitor" RELATED [ChEBI] +synonym: "lipoxygenase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76837 ! EC 1.13.11.* (oxidoreductase acting on single donors and incorporating 2 O atoms) inhibitor + +[Term] +id: CHEBI:35868 +name: hydroxy monocarboxylic acid +namespace: chebi_ontology +def: "Any monocarboxylic acid which also contains a separate (alcoholic or phenolic) hydroxy substituent." [] +subset: 3_STAR +synonym: "hydroxy acid" RELATED [ChEBI] +synonym: "hydroxy monocarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:24669 ! hydroxy carboxylic acid +is_a: CHEBI:25384 ! monocarboxylic acid + +[Term] +id: CHEBI:35871 +name: oxo monocarboxylic acid +namespace: chebi_ontology +def: "Any monocarboxylic acid having at least one additional oxo functional group." [] +subset: 3_STAR +synonym: "oxo monocarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:25384 ! monocarboxylic acid +is_a: CHEBI:25754 ! oxo carboxylic acid +relationship: is_conjugate_acid_of CHEBI:35902 ! oxo monocarboxylic acid anion + +[Term] +id: CHEBI:35875 +name: imidazopyrimidine +namespace: chebi_ontology +subset: 3_STAR +synonym: "imidazopyrimidines" RELATED [ChEBI] +is_a: CHEBI:27171 ! organic heterobicyclic compound +is_a: CHEBI:33833 ! heteroarene +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + +[Term] +id: CHEBI:35878 +name: phosphanes +namespace: chebi_ontology +def: "The saturated hydrides of tervalent phosphorus having the general formula PnHn+2." [] +subset: 3_STAR +synonym: "phosphanes" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:35879 ! phosphorus hydride + +[Term] +id: CHEBI:35879 +name: phosphorus hydride +namespace: chebi_ontology +subset: 3_STAR +synonym: "phosphorus hydrides" RELATED [ChEBI] +is_a: CHEBI:26082 ! phosphorus molecular entity +is_a: CHEBI:35881 ! pnictogen hydride + +[Term] +id: CHEBI:35880 +name: diphosphane +namespace: chebi_ontology +def: "The simplest of the diphosphanes, consisting of two covelently linked phosphorus atoms each carrying two hydrogens." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "65.979" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "65.97928" RELATED MASS [ChEBI] +synonym: "[H]P([H])P([H])[H]" RELATED SMILES [ChEBI] +synonym: "biphosphine" RELATED [ChEBI] +synonym: "diphosphane" EXACT IUPAC_NAME [IUPAC] +synonym: "diphosphine" RELATED [NIST_Chemistry_WebBook] +synonym: "H4P2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/H4P2/c1-2/h1-2H2" RELATED InChI [ChEBI] +synonym: "P2H4" RELATED [IUPAC] +synonym: "VURFVHCLMJOLKN-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:13445-50-6 "ChemIDplus" +xref: Reaxys:13729060 "Reaxys" +xref: Wikipedia:Diphosphane +is_a: CHEBI:51650 ! diphosphanes + +[Term] +id: CHEBI:35881 +name: pnictogen hydride +namespace: chebi_ontology +subset: 3_STAR +synonym: "pnictogen hydride" EXACT [ChEBI] +synonym: "pnictogen hydrides" RELATED [ChEBI] +is_a: CHEBI:33242 ! inorganic hydride +is_a: CHEBI:33302 ! pnictogen molecular entity + +[Term] +id: CHEBI:35883 +name: phosphine +namespace: chebi_ontology +def: "Phosphane (PH3) and compounds derived from it by substituting one, two or three hydrogen atoms by hydrocarbyl groups: RPH2, R2PH, R3P (R =/= H) are called primary, secondary and tertiary phosphines, respectively. A specific phosphine is preferably named as a substituted phosphane." [] +subset: 3_STAR +synonym: "fosfinas" RELATED [IUPAC] +synonym: "phosphines" EXACT IUPAC_NAME [IUPAC] +synonym: "phosphines" RELATED [ChEBI] +xref: PMID:14629181 "Europe PMC" +xref: PMID:21241104 "Europe PMC" +xref: PMID:21399776 "Europe PMC" +xref: PMID:21699183 "Europe PMC" +xref: PMID:21714575 "Europe PMC" +xref: PMID:21854058 "Europe PMC" +xref: PMID:21957974 "Europe PMC" +is_a: CHEBI:26082 ! phosphorus molecular entity +relationship: has_role CHEBI:35223 ! catalyst + +[Term] +id: CHEBI:35884 +name: primary phosphine +namespace: chebi_ontology +def: "A compound derived from phosphane by substituting one hydrogen atom by a hydrocarbyl group." [] +subset: 3_STAR +synonym: "fosfina primaria" RELATED [IUPAC] +synonym: "fosfinas primarias" RELATED [IUPAC] +synonym: "phospnines primaires" RELATED [IUPAC] +synonym: "primary phosphines" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:35883 ! phosphine + +[Term] +id: CHEBI:35891 +name: propylphosphine +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "76.044" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "76.07730" RELATED MASS [ChEBI] +synonym: "C3H9P" RELATED FORMULA [ChEBI] +synonym: "CCCP" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H9P/c1-2-3-4/h2-4H2,1H3" RELATED InChI [ChEBI] +synonym: "n-propylphosphine" RELATED [Patent] +synonym: "NNOBHPBYUHDMQF-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "propylphosphane" EXACT IUPAC_NAME [IUPAC] +synonym: "PrPH2" RELATED [ChEBI] +xref: Beilstein:1730775 "Beilstein" +xref: Patent:CA1320105 +xref: Patent:US4721683 +is_a: CHEBI:35884 ! primary phosphine + +[Term] +id: CHEBI:35902 +name: oxo monocarboxylic acid anion +namespace: chebi_ontology +alt_id: CHEBI:35178 +alt_id: CHEBI:35901 +subset: 3_STAR +synonym: "oxo monocarboxylic acid anions" RELATED [ChEBI] +is_a: CHEBI:35757 ! monocarboxylic acid anion +is_a: CHEBI:35903 ! oxo carboxylic acid anion +relationship: is_conjugate_base_of CHEBI:35871 ! oxo monocarboxylic acid + +[Term] +id: CHEBI:35903 +name: oxo carboxylic acid anion +namespace: chebi_ontology +def: "Any carboxylic acid anion containing at least one oxo group." [] +subset: 3_STAR +synonym: "oxo carboxylic acid anions" RELATED [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion + +[Term] +id: CHEBI:35910 +name: 2-oxo monocarboxylic acid +namespace: chebi_ontology +alt_id: CHEBI:11634 +alt_id: CHEBI:1238 +alt_id: CHEBI:13195 +alt_id: CHEBI:13594 +alt_id: CHEBI:19736 +alt_id: CHEBI:35909 +def: "Any monocarboxylic acid having a 2-oxo substituent." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-Oxo acid" RELATED [KEGG_COMPOUND] +synonym: "2-oxo acid" RELATED [UniProt] +synonym: "2-oxo carboxylic acids" EXACT IUPAC_NAME [IUPAC] +synonym: "2-oxo monocarboxylic acids" RELATED [ChEBI] +synonym: "2-Oxocarboxylate" RELATED [KEGG_COMPOUND] +synonym: "72.993" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "73.02750" RELATED MASS [ChEBI] +synonym: "C2HO3R" RELATED FORMULA [ChEBI] +synonym: "OC(=O)C([*])=O" RELATED SMILES [ChEBI] +xref: KEGG:C00161 +is_a: CHEBI:35871 ! oxo monocarboxylic acid +relationship: is_conjugate_acid_of CHEBI:35179 ! 2-oxo monocarboxylic acid anion + +[Term] +id: CHEBI:35942 +name: neurotransmitter agent +namespace: chebi_ontology +def: "A substance used for its pharmacological action on any aspect of neurotransmitter systems. Neurotransmitter agents include agonists, antagonists, degradation inhibitors, uptake inhibitors, depleters, precursors, and modulators of receptor function." [] +subset: 3_STAR +synonym: "neurotransmitter agents" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug +is_a: CHEBI:52210 ! pharmacological role + +[Term] +id: CHEBI:35969 +name: 3-hydroxy monocarboxylic acid +namespace: chebi_ontology +def: "A hydroxy monocarboxylic acid that has a hydroxy group beta to the carboxy group." [] +subset: 3_STAR +synonym: "3-hydroxy acid" RELATED [ChEBI] +synonym: "3-hydroxy monocarboxylic acids" RELATED [ChEBI] +synonym: "beta-hydroxy acid" RELATED [ChEBI] +synonym: "beta-hydroxy acids" RELATED [ChEBI] +synonym: "beta-hydroxy carboxylic acid" RELATED [ChEBI] +synonym: "beta-hydroxy carboxylic acids" RELATED [ChEBI] +is_a: CHEBI:35868 ! hydroxy monocarboxylic acid +is_a: CHEBI:61355 ! 3-hydroxy carboxylic acid + +[Term] +id: CHEBI:35972 +name: dihydroxy monocarboxylic acid +namespace: chebi_ontology +def: "Any hydroxy monocarboxylic acid carrying at least two hydroxy groups." [] +subset: 3_STAR +synonym: "dihydroxy monocarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:35868 ! hydroxy monocarboxylic acid + +[Term] +id: CHEBI:35973 +name: 3-oxo monocarboxylic acid anion +namespace: chebi_ontology +def: "An oxo monocarboxylic acid anion having the oxo group located at the 3-position (R = H or organyl group)." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "3-oxo monocarboxylic acid anions" RELATED [ChEBI] +synonym: "83.985" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "84.03030" RELATED MASS [ChEBI] +synonym: "[O-]C(=O)C([*])([*])C([*])=O" RELATED SMILES [ChEBI] +synonym: "a 3-oxo acid" RELATED [UniProt] +synonym: "C3O3R3" RELATED FORMULA [ChEBI] +is_a: CHEBI:35902 ! oxo monocarboxylic acid anion + +[Term] +id: CHEBI:35987 +name: diamino acid +namespace: chebi_ontology +def: "Any amino acid carrying two amino groups." [] +subset: 3_STAR +is_a: CHEBI:33709 ! amino acid +relationship: is_conjugate_acid_of CHEBI:59561 ! diamino acid anion + +[Term] +id: CHEBI:35990 +name: bridged compound +namespace: chebi_ontology +def: "A polycyclic compound in which two rings have two or more atoms in common." [] +subset: 3_STAR +synonym: "bridged compounds" RELATED [ChEBI] +is_a: CHEBI:33635 ! polycyclic compound + +[Term] +id: CHEBI:35992 +name: penams +namespace: chebi_ontology +def: "Natural and synthetic antibiotics containing the 4-thia-1-azabicyclo[3.2.0]heptan-7-one structure, generally assumed to have the 5R configuration unless otherwise specified." [] +subset: 3_STAR +synonym: "penams" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:27171 ! organic heterobicyclic compound +is_a: CHEBI:27933 ! beta-lactam antibiotic +is_a: CHEBI:38106 ! organosulfur heterocyclic compound + +[Term] +id: CHEBI:36043 +name: antimicrobial drug +namespace: chebi_ontology +def: "A drug used to treat or prevent microbial infections." [] +subset: 3_STAR +synonym: "antimicrobial drugs" RELATED [ChEBI] +is_a: CHEBI:33281 ! antimicrobial agent +is_a: CHEBI:35441 ! antiinfective agent + +[Term] +id: CHEBI:36044 +name: antiviral drug +namespace: chebi_ontology +def: "A substance used in the prophylaxis or therapy of virus diseases." [] +subset: 3_STAR +synonym: "anti-viral drug" RELATED [ChEBI] +synonym: "anti-virus drug" RELATED [ChEBI] +synonym: "antiviral drugs" RELATED [ChEBI] +is_a: CHEBI:22587 ! antiviral agent +is_a: CHEBI:36043 ! antimicrobial drug + +[Term] +id: CHEBI:36047 +name: antibacterial drug +namespace: chebi_ontology +def: "A drug used to treat or prevent bacterial infections." [] +subset: 3_STAR +synonym: "antibacterial drugs" RELATED [ChEBI] +xref: Wikipedia:Antibacterial +is_a: CHEBI:33282 ! antibacterial agent +is_a: CHEBI:36043 ! antimicrobial drug + +[Term] +id: CHEBI:36059 +name: hydroxy monocarboxylic acid anion +namespace: chebi_ontology +def: "Any monocarboxylic acid anion carrying at least one hydroxy substituent." [] +subset: 3_STAR +synonym: "hydroxy monocarboxylic acid anions" RELATED [ChEBI] +synonym: "hydroxymonocarboxylic acid anion" RELATED [ChEBI] +synonym: "hydroxymonocarboxylic acid anions" RELATED [ChEBI] +is_a: CHEBI:35757 ! monocarboxylic acid anion + +[Term] +id: CHEBI:36078 +name: cholanoid +namespace: chebi_ontology +alt_id: CHEBI:22867 +alt_id: CHEBI:50419 +subset: 3_STAR +synonym: "bile acids and derivatives" RELATED [LIPID_MAPS] +synonym: "cholanoids" RELATED [ChEBI] +xref: LIPID_MAPS_class:LMST04 "LIPID MAPS" +is_a: CHEBI:35341 ! steroid +relationship: has_parent_hydride CHEBI:35519 ! cholane + +[Term] +id: CHEBI:36084 +name: dihydroxybenzoate +namespace: chebi_ontology +def: "A hydroxybenzoate that is the conjugate base of dihydroxybenzoic acid." [] +subset: 3_STAR +synonym: "dihydroxybenzoate" EXACT [ChEBI] +synonym: "dihydroxybenzoates" RELATED [ChEBI] +is_a: CHEBI:24675 ! hydroxybenzoate +relationship: is_conjugate_base_of CHEBI:23778 ! dihydroxybenzoic acid + +[Term] +id: CHEBI:36093 +name: inorganic chloride +namespace: chebi_ontology +subset: 3_STAR +synonym: "inorganic chloride salt" RELATED [ChEBI] +synonym: "inorganic chloride salts" RELATED [ChEBI] +synonym: "inorganic chlorides" RELATED [ChEBI] +is_a: CHEBI:23114 ! chloride salt +is_a: CHEBI:24839 ! inorganic salt + +[Term] +id: CHEBI:36094 +name: organic chloride salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic chloride salts" RELATED [ChEBI] +is_a: CHEBI:23114 ! chloride salt +is_a: CHEBI:51069 ! organic halide salt + +[Term] +id: CHEBI:36141 +name: quinone +namespace: chebi_ontology +alt_id: CHEBI:13684 +alt_id: CHEBI:26517 +def: "Compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, derived from aromatic compounds by conversion of an even number of -CH= groups into -C(=O)- groups with any necessary rearrangement of double bonds (polycyclic and heterocyclic analogues are included)." [] +subset: 3_STAR +synonym: "a quinone" RELATED [UniProt] +synonym: "Chinon" RELATED [ChEBI] +synonym: "quinone" EXACT [IUPAC] +synonym: "quinones" EXACT IUPAC_NAME [IUPAC] +synonym: "quinones" RELATED [ChEBI] +xref: Wikipedia:Quinone +is_a: CHEBI:3992 ! cyclic ketone + +[Term] +id: CHEBI:36164 +name: amino dicarboxylic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "amino dicarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:33709 ! amino acid +is_a: CHEBI:35692 ! dicarboxylic acid + +[Term] +id: CHEBI:36165 +name: pimelate(2-) +namespace: chebi_ontology +def: "A dicarboxylic acid dianion obtained by the deprotonation of both the carboxy groups of pimelic acid." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "158.058" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "158.15190" RELATED MASS [ChEBI] +synonym: "[O-]C(=O)CCCCCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "C7H10O4" RELATED FORMULA [ChEBI] +synonym: "heptanedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "heptanedioate" RELATED [UniProt] +synonym: "InChI=1S/C7H12O4/c8-6(9)4-2-1-3-5-7(10)11/h1-5H2,(H,8,9)(H,10,11)/p-2" RELATED InChI [ChEBI] +synonym: "WLJVNTCWHIRURA-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +xref: Beilstein:3905193 "Beilstein" +xref: Gmelin:363895 "Gmelin" +xref: MetaCyc:CPD-205 +xref: Reaxys:3905193 "Reaxys" +is_a: CHEBI:133773 ! pimelate +is_a: CHEBI:28965 ! dicarboxylic acid dianion +relationship: is_conjugate_base_of CHEBI:17774 ! pimelate(1-) + +[Term] +id: CHEBI:36180 +name: butenedioate +namespace: chebi_ontology +alt_id: CHEBI:22956 +alt_id: CHEBI:22957 +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "113.995" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "114.05628" RELATED MASS [ChEBI] +synonym: "[H]C(=C([H])C([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "but-2-enedioate" EXACT IUPAC_NAME [IUPAC] +synonym: "C4H2O4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H4O4/c5-3(6)1-2-4(7)8/h1-2H,(H,5,6)(H,7,8)/p-2" RELATED InChI [ChEBI] +synonym: "VZCYOOQTPOCHFL-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +xref: Gmelin:874013 "Gmelin" +is_a: CHEBI:61336 ! C4-dicarboxylate +relationship: is_conjugate_base_of CHEBI:37155 ! hydrogen butenedioate + +[Term] +id: CHEBI:36229 +name: allolactose +namespace: chebi_ontology +def: "A glycosylglucose consisting of galactose and glucose units linked through a 1-6 glycosidic linkage." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "342.116" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "342.29648" RELATED MASS [ChEBI] +synonym: "6-O-beta-D-galactopyranosyl-D-glucopyranose" RELATED [ChemIDplus] +synonym: "allolactose" EXACT [ChemIDplus] +synonym: "beta-D-galactopyranosyl-(1->6)-D-glucopyranose" EXACT IUPAC_NAME [IUPAC] +synonym: "beta-D-Galp-(1->6)-D-Glcp" RELATED [IUPAC] +synonym: "C12H22O11" RELATED FORMULA [ChEBI] +synonym: "DLRVVLDZNNYCBX-VDGMBKLFSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C12H22O11/c13-1-3-5(14)8(17)10(19)12(23-3)21-2-4-6(15)7(16)9(18)11(20)22-4/h3-20H,1-2H2/t3-,4-,5+,6-,7+,8+,9-,10-,11?,12-/m1/s1" RELATED InChI [ChEBI] +synonym: "OC[C@H]1O[C@@H](OC[C@H]2OC(O)[C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +xref: Beilstein:1292777 "Beilstein" +xref: CAS:645-03-4 "ChemIDplus" +xref: DrugBank:DB04116 +xref: PMID:24128493 "Europe PMC" +xref: PMID:241475 "Europe PMC" +xref: Reaxys:1292777 "Reaxys" +is_a: CHEBI:24405 ! glycosylglucose +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite + +[Term] +id: CHEBI:36233 +name: disaccharide +namespace: chebi_ontology +alt_id: CHEBI:23844 +alt_id: CHEBI:4654 +def: "A compound in which two monosaccharides are joined by a glycosidic bond." [] +subset: 3_STAR +synonym: "disacarido" RELATED [ChEBI] +synonym: "disacaridos" RELATED [IUPAC] +synonym: "Disaccharid" RELATED [ChEBI] +synonym: "Disaccharide" EXACT [KEGG_COMPOUND] +synonym: "disaccharides" EXACT IUPAC_NAME [IUPAC] +synonym: "Disacharid" RELATED [ChEBI] +xref: KEGG:C01911 +is_a: CHEBI:50699 ! oligosaccharide + +[Term] +id: CHEBI:36234 +name: chenodeoxycholate +namespace: chebi_ontology +alt_id: CHEBI:13960 +alt_id: CHEBI:23093 +alt_id: CHEBI:57884 +def: "Conjugate base of chenodeoxycholic acid; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "391.285" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "391.56406" RELATED MASS [ChEBI] +synonym: "3alpha,7alpha-dihydroxy-5beta-cholan-24-oate" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@@]12C[C@H](O)CC[C@]1(C)[C@@]1([H])CC[C@]3(C)[C@]([H])(CC[C@@]3([H])[C@]1([H])[C@H](O)C2)[C@H](C)CCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "C24H39O4" RELATED FORMULA [ChEBI] +synonym: "chenodeoxycholate" EXACT [UniProt] +synonym: "chenodeoxycholate anion" RELATED [ChEBI] +synonym: "chenodeoxycholate(1-)" RELATED [ChEBI] +synonym: "InChI=1S/C24H40O4/c1-14(4-7-21(27)28)17-5-6-18-22-19(9-11-24(17,18)3)23(2)10-8-16(25)12-15(23)13-20(22)26/h14-20,22,25-26H,4-13H2,1-3H3,(H,27,28)/p-1/t14-,15+,16-,17-,18+,19+,20-,22+,23+,24-/m1/s1" RELATED InChI [ChEBI] +synonym: "RUDATBOHQWOJDD-BSWAIDMHSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3703074 "Beilstein" +is_a: CHEBI:131878 ! cholanic acid anion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:16755 ! chenodeoxycholic acid + +[Term] +id: CHEBI:36235 +name: bile acid anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "bile acid anions" RELATED [ChEBI] +is_a: CHEBI:35757 ! monocarboxylic acid anion +is_a: CHEBI:36078 ! cholanoid +is_a: CHEBI:50160 ! steroid acid anion +relationship: is_conjugate_base_of CHEBI:3098 ! bile acid + +[Term] +id: CHEBI:36237 +name: cholanic acid +namespace: chebi_ontology +def: "A steroid acid that consists of cholane having a carboxy group in place of the methyl group at position 24." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "360.303" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "360.57320" RELATED MASS [ChEBI] +synonym: "[H][C@@]1(CC[C@@]2([H])[C@]3([H])CCC4CCCC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCC(O)=O" RELATED SMILES [ChEBI] +synonym: "C24H40O2" RELATED FORMULA [ChEBI] +synonym: "cholan-24-oic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C24H40O2/c1-16(7-12-22(25)26)19-10-11-20-18-9-8-17-6-4-5-14-23(17,2)21(18)13-15-24(19,20)3/h16-21H,4-15H2,1-3H3,(H,25,26)/t16-,17?,18+,19-,20+,21+,23+,24-/m1/s1" RELATED InChI [ChEBI] +synonym: "RPKLZQLYODPWTM-KBMWBBLPSA-N" RELATED InChIKey [ChEBI] +xref: CAS:25312-65-6 "ChemIDplus" +xref: Patent:JP2008069152 +xref: Reaxys:13246008 "Reaxys" +is_a: CHEBI:36278 ! cholanic acids + +[Term] +id: CHEBI:36238 +name: 5beta-cholanic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "(5beta)-cholan-24-oic acid" RELATED [ChemIDplus] +synonym: "(5beta,17beta)-gamma-methylandrostane-17-butanoic acid" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "360.303" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "360.57320" RELATED MASS [ChEBI] +synonym: "5beta-cholan-24-oic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "5beta-cholanic acid" EXACT [ChemIDplus] +synonym: "5beta-cholanoic acid" RELATED [ChemIDplus] +synonym: "[H][C@@]12CCCC[C@]1(C)[C@@]1([H])CC[C@]3(C)[C@]([H])(CC[C@@]3([H])[C@]1([H])CC2)[C@H](C)CCC(O)=O" RELATED SMILES [ChEBI] +synonym: "C24H40O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C24H40O2/c1-16(7-12-22(25)26)19-10-11-20-18-9-8-17-6-4-5-14-23(17,2)21(18)13-15-24(19,20)3/h16-21H,4-15H2,1-3H3,(H,25,26)/t16-,17+,18+,19-,20+,21+,23+,24-/m1/s1" RELATED InChI [ChEBI] +synonym: "RPKLZQLYODPWTM-LVVAJZGHSA-N" RELATED InChIKey [ChEBI] +synonym: "ursocholanic acid" RELATED [ChemIDplus] +xref: Beilstein:3214794 "Beilstein" +xref: CAS:546-18-9 "ChemIDplus" +xref: LIPID_MAPS_instance:LMST04010441 "LIPID MAPS" +is_a: CHEBI:36237 ! cholanic acid +is_a: CHEBI:36248 ! 5beta-cholanic acids + +[Term] +id: CHEBI:36248 +name: 5beta-cholanic acids +namespace: chebi_ontology +def: "Members of the class of cholanic acids based on a 5beta-cholane skeleton." [] +subset: 3_STAR +is_a: CHEBI:136889 ! 5beta steroid +is_a: CHEBI:36278 ! cholanic acids +relationship: has_parent_hydride CHEBI:20664 ! 5beta-cholane + +[Term] +id: CHEBI:36249 +name: bile acid conjugate +namespace: chebi_ontology +def: "A glycine or taurine amide of a bile acid." [] +subset: 3_STAR +synonym: "bile acid conjugates" RELATED [ChEBI] +is_a: CHEBI:36078 ! cholanoid + +[Term] +id: CHEBI:36252 +name: glycochenodeoxycholate +namespace: chebi_ontology +alt_id: CHEBI:58664 +alt_id: CHEBI:59452 +def: "A N-acylglycinate that is the conjugate base of glycochenodeoxycholic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "448.306" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "448.61542" RELATED MASS [ChEBI] +synonym: "[H][C@@]12C[C@H](O)CC[C@]1(C)[C@@]1([H])CC[C@]3(C)[C@]([H])(CC[C@@]3([H])[C@]1([H])[C@H](O)C2)[C@H](C)CCC(=O)NCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "C26H42NO5" RELATED FORMULA [ChEBI] +synonym: "GHCZAUBVMUEKKP-GYPHWSFCSA-M" RELATED InChIKey [ChEBI] +synonym: "glycochenodeoxycholate" EXACT [UniProt] +synonym: "InChI=1S/C26H43NO5/c1-15(4-7-22(30)27-14-23(31)32)18-5-6-19-24-20(9-11-26(18,19)3)25(2)10-8-17(28)12-16(25)13-21(24)29/h15-21,24,28-29H,4-14H2,1-3H3,(H,27,30)(H,31,32)/p-1/t15-,16+,17-,18-,19+,20+,21-,24+,25+,26-/m1/s1" RELATED InChI [ChEBI] +synonym: "N-(3alpha,7alpha-dihydroxy-5beta-cholan-24-oyl)glycinate" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:3730023 "Beilstein" +xref: Reaxys:3730023 "Reaxys" +is_a: CHEBI:131879 ! cholanic acid conjugate anion +is_a: CHEBI:57670 ! N-acylglycinate +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:36274 ! glycochenodeoxycholic acid + +[Term] +id: CHEBI:36255 +name: bile acid glycine conjugate +namespace: chebi_ontology +def: "Amide of a bile acid with glycine." [] +subset: 3_STAR +synonym: "bile acid glycine conjugates" RELATED [ChEBI] +is_a: CHEBI:24373 ! glycine derivative +is_a: CHEBI:36249 ! bile acid conjugate + +[Term] +id: CHEBI:36262 +name: molybdenum oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "molybdenum oxoanion" EXACT [ChEBI] +synonym: "molybdenum oxoanions" RELATED [ChEBI] +is_a: CHEBI:35202 ! molybdenum coordination entity +is_a: CHEBI:35405 ! transition element oxoanion + +[Term] +id: CHEBI:36263 +name: hydrogenmolybdate +namespace: chebi_ontology +def: "A monovalent inorganic anion that consists of molybdic acid where one of the two OH groups has been deprotonated." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "160.94554" RELATED MASS [ChEBI] +synonym: "162.893" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[H]O[Mo]([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "[MoO3(OH)](-)" RELATED [ChEBI] +synonym: "HMoO4" RELATED FORMULA [ChEBI] +synonym: "HMoO4(-)" RELATED [ChEBI] +synonym: "hydrogen molybdate" RELATED [IUPAC] +synonym: "hydrogen(tetraoxidomolybdate)(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydroxidodioxidomolybdate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/Mo.H2O.3O/h;1H2;;;/q+1;;;;-1/p-1" RELATED InChI [ChEBI] +synonym: "NIBXJCYCRLUCEJ-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +is_a: CHEBI:36262 ! molybdenum oxoanion +is_a: CHEBI:79389 ! monovalent inorganic anion +relationship: is_conjugate_acid_of CHEBI:36264 ! molybdate +relationship: is_conjugate_base_of CHEBI:25371 ! molybdic acid + +[Term] +id: CHEBI:36264 +name: molybdate +namespace: chebi_ontology +alt_id: CHEBI:25368 +alt_id: CHEBI:6967 +def: "A divalent inorganic anion obtained by removal of both protons from molybdic acid" [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "159.93760" RELATED MASS [ChEBI] +synonym: "161.885" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[MoO4](2-)" RELATED [MolBase] +synonym: "[O-][Mo]([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/Mo.4O/q;;;2*-1" RELATED InChI [ChEBI] +synonym: "MEFBJEMVZONFCJ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Molybdate" EXACT [KEGG_COMPOUND] +synonym: "molybdate" EXACT [UniProt] +synonym: "MOLYBDATE ION" RELATED [PDBeChem] +synonym: "MoO4" RELATED FORMULA [ChEBI] +synonym: "tetraoxidomolybdate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "tetraoxidomolybdate(VI)" EXACT IUPAC_NAME [IUPAC] +xref: CAS:14259-85-9 "ChemIDplus" +xref: Gmelin:2155 "Gmelin" +xref: KEGG:C06232 +xref: MolBase:230 +xref: PDBeChem:MOO +is_a: CHEBI:36262 ! molybdenum oxoanion +is_a: CHEBI:79388 ! divalent inorganic anion +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_base_of CHEBI:36263 ! hydrogenmolybdate + +[Term] +id: CHEBI:36265 +name: transition element oxoacid +namespace: chebi_ontology +subset: 3_STAR +synonym: "transition element oxoacids" RELATED [ChEBI] +synonym: "transition metal oxoacid" RELATED [ChEBI] +synonym: "transition metal oxoacids" RELATED [ChEBI] +is_a: CHEBI:33861 ! transition element coordination entity + +[Term] +id: CHEBI:36267 +name: molybdenum oxoacid +namespace: chebi_ontology +subset: 3_STAR +synonym: "molybdenum oxoacid" EXACT [ChEBI] +synonym: "molybdenum oxoacids" RELATED [ChEBI] +synonym: "oxoacids of molybdenum" RELATED [ChEBI] +is_a: CHEBI:35202 ! molybdenum coordination entity +is_a: CHEBI:36265 ! transition element oxoacid + +[Term] +id: CHEBI:36270 +name: tungsten oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "tungsten oxoanion" EXACT [ChEBI] +synonym: "tungsten oxoanions" RELATED [ChEBI] +is_a: CHEBI:35233 ! tungsten coordination entity +is_a: CHEBI:35405 ! transition element oxoanion + +[Term] +id: CHEBI:36271 +name: hydrogentungstate +namespace: chebi_ontology +def: "A monovalent inorganic anion that consists of tungstic acid where one of the two OH groups has been deprotonated." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "248.84554" RELATED MASS [ChEBI] +synonym: "248.938" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[H]O[W]([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "[WO3(OH)](-)" RELATED [ChEBI] +synonym: "HO4W" RELATED FORMULA [ChEBI] +synonym: "HWO4(-)" RELATED [IUPAC] +synonym: "hydrogen(tetraoxidotungstate)(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydroxidodioxidotungstate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H2O.3O.W/h1H2;;;;/q;;;-1;+1/p-1" RELATED InChI [ChEBI] +synonym: "QGUPUDUDXSOSNF-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Gmelin:26402 "Gmelin" +is_a: CHEBI:36270 ! tungsten oxoanion +is_a: CHEBI:79389 ! monovalent inorganic anion +relationship: is_conjugate_acid_of CHEBI:46502 ! tungstate +relationship: is_conjugate_base_of CHEBI:36272 ! tungstic acid + +[Term] +id: CHEBI:36272 +name: tungstic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "249.85348" RELATED MASS [ChEBI] +synonym: "249.946" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[H]O[W](=O)(=O)O[H]" RELATED SMILES [ChEBI] +synonym: "[WO2(OH)2]" RELATED [ChEBI] +synonym: "CMPGARWFYBADJI-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "dihydrogen wolframate" RELATED [ChemIDplus] +synonym: "dihydroxidodioxidotungsten" EXACT IUPAC_NAME [IUPAC] +synonym: "H2O4W" RELATED FORMULA [ChEBI] +synonym: "H2WO4" RELATED [IUPAC] +synonym: "InChI=1S/2H2O.2O.W/h2*1H2;;;/q;;;;+2/p-2" RELATED InChI [ChEBI] +synonym: "tungstic(VI) acid" RELATED [ChemIDplus] +xref: CAS:7783-03-1 "ChemIDplus" +xref: Gmelin:82224 "Gmelin" +is_a: CHEBI:35233 ! tungsten coordination entity +relationship: is_conjugate_acid_of CHEBI:36271 ! hydrogentungstate + +[Term] +id: CHEBI:36273 +name: sodium glycocholate +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "487.291" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "487.60459" RELATED MASS [ChEBI] +synonym: "[Na+].[H][C@@]12C[C@H](O)CC[C@]1(C)[C@@]1([H])C[C@H](O)[C@]3(C)[C@]([H])(CC[C@@]3([H])[C@]1([H])[C@H](O)C2)[C@H](C)CCC(=O)NCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "C26H42NNaO6" RELATED FORMULA [ChEBI] +synonym: "glycocholate sodium" RELATED [ChemIDplus] +synonym: "glycocholate sodium salt" RELATED [ChemIDplus] +synonym: "glycocholic acid sodium salt" RELATED [ChemIDplus] +synonym: "InChI=1S/C26H43NO6.Na/c1-14(4-7-22(31)27-13-23(32)33)17-5-6-18-24-19(12-21(30)26(17,18)3)25(2)9-8-16(28)10-15(25)11-20(24)29;/h14-21,24,28-30H,4-13H2,1-3H3,(H,27,31)(H,32,33);/q;+1/p-1/t14-,15+,16-,17-,18+,19+,20-,21+,24+,25+,26-;/m1./s1" RELATED InChI [ChEBI] +synonym: "monosodium glycocholic acid" RELATED [ChemIDplus] +synonym: "N-choloylglycine, monosodium salt" RELATED [ChemIDplus] +synonym: "OABYVIYXWMZFFJ-ZUHYDKSRSA-M" RELATED InChIKey [ChEBI] +synonym: "sodium glycocholate" EXACT [ChemIDplus] +synonym: "sodium N-(3alpha,7alpha,12alpha-trihydroxy-5beta-cholan-24-oyl)glycinate" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:3854517 "Beilstein" +xref: CAS:863-57-0 "ChemIDplus" +is_a: CHEBI:22868 ! bile salt +relationship: has_part CHEBI:29746 ! glycocholate + +[Term] +id: CHEBI:36274 +name: glycochenodeoxycholic acid +namespace: chebi_ontology +alt_id: CHEBI:3591 +alt_id: CHEBI:41520 +alt_id: CHEBI:5463 +def: "A bile acid glycine conjugate having 3alpha,7alpha-dihydroxy-5beta-cholan-24-oyl as the bile acid component." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "449.314" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "449.62336" RELATED MASS [ChEBI] +synonym: "[(3alpha,7alpha-dihydroxy-24-oxo-5beta-cholan-24-yl)amino]acetic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@@]12C[C@H](O)CC[C@]1(C)[C@@]1([H])CC[C@]3(C)[C@]([H])(CC[C@@]3([H])[C@]1([H])[C@H](O)C2)[C@H](C)CCC(=O)NCC(O)=O" RELATED SMILES [ChEBI] +synonym: "C26H43NO5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "chenodeoxycholylglycine" RELATED [ChemIDplus] +synonym: "Chenodeoxyglycocholate" RELATED [KEGG_COMPOUND] +synonym: "chenodeoxyglycocholic acid" RELATED [ChEBI] +synonym: "GCDCA" RELATED [ChEBI] +synonym: "GHCZAUBVMUEKKP-GYPHWSFCSA-N" RELATED InChIKey [ChEBI] +synonym: "glycine chenodeoxycholate" RELATED [ChemIDplus] +synonym: "Glycochenodeoxycholate" RELATED [KEGG_COMPOUND] +synonym: "GLYCOCHENODEOXYCHOLIC ACID" EXACT [PDBeChem] +synonym: "Glycochenodeoxycholic acid" EXACT [KEGG_COMPOUND] +synonym: "InChI=1S/C26H43NO5/c1-15(4-7-22(30)27-14-23(31)32)18-5-6-19-24-20(9-11-26(18,19)3)25(2)10-8-17(28)12-16(25)13-21(24)29/h15-21,24,28-29H,4-14H2,1-3H3,(H,27,30)(H,31,32)/t15-,16+,17-,18-,19+,20+,21-,24+,25+,26-/m1/s1" RELATED InChI [ChEBI] +synonym: "N-(3alpha,7alpha-dihydroxy-5beta-cholan-24-oyl)glycine" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:3226177 "Beilstein" +xref: CAS:640-79-9 "KEGG COMPOUND" +xref: DrugBank:DB02123 +xref: HMDB:HMDB06898 +xref: KEGG:C05466 +xref: MetaCyc:GLYCOCHENODEOXYCHOLIC_ACID +xref: PDBeChem:CHO +xref: PMID:22770225 "Europe PMC" +xref: PMID:23078175 "Europe PMC" +xref: Reaxys:3226177 "Reaxys" +xref: Wikipedia:Glycochenodeoxycholic_acid +is_a: CHEBI:36255 ! bile acid glycine conjugate +relationship: has_functional_parent CHEBI:16755 ! chenodeoxycholic acid +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:36252 ! glycochenodeoxycholate + +[Term] +id: CHEBI:36277 +name: bile acid salt +namespace: chebi_ontology +def: "A salt of a bile acid." [] +subset: 3_STAR +synonym: "bile acid salts" RELATED [ChEBI] +is_a: CHEBI:24868 ! organic salt +is_a: CHEBI:36078 ! cholanoid + +[Term] +id: CHEBI:36278 +name: cholanic acids +namespace: chebi_ontology +alt_id: CHEBI:23166 +alt_id: CHEBI:23211 +subset: 1_STAR +synonym: "cholan-24-oic acids" RELATED [ChEBI] +is_a: CHEBI:36078 ! cholanoid +is_a: CHEBI:47891 ! steroid acid + +[Term] +id: CHEBI:36299 +name: tricarboxylic acid monoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "tricarboxylic acid monoanions" RELATED [ChEBI] +is_a: CHEBI:35753 ! tricarboxylic acid anion + +[Term] +id: CHEBI:36300 +name: tricarboxylic acid dianion +namespace: chebi_ontology +subset: 3_STAR +synonym: "tricarboxylic acid dianions" RELATED [ChEBI] +is_a: CHEBI:35753 ! tricarboxylic acid anion + +[Term] +id: CHEBI:36333 +name: local anaesthetic +namespace: chebi_ontology +def: "Any member of a group of drugs that reversibly inhibit the propagation of signals along nerves. Wide variations in potency, stability, toxicity, water-solubility and duration of action determine the route used for administration, e.g. topical, intravenous, epidural or spinal block." [] +subset: 3_STAR +synonym: "anesthesique local" RELATED [ChEBI] +synonym: "local anaesthetic" EXACT IUPAC_NAME [IUPAC] +synonym: "local anaesthetics" RELATED [ChEBI] +synonym: "local anesthetics" RELATED [ChEBI] +synonym: "Lokalanaesthetikum" RELATED [ChEBI] +is_a: CHEBI:38867 ! anaesthetic + +[Term] +id: CHEBI:36335 +name: trypanocidal drug +namespace: chebi_ontology +def: "A drug used to treat or prevent infections caused by protozoal organisms belonging to the suborder Trypanosomatida." [] +subset: 3_STAR +synonym: "antitrypanosomal agent" RELATED [ChEBI] +synonym: "antitrypanosomal agents" RELATED [ChEBI] +synonym: "antitrypanosomal drug" RELATED [ChEBI] +synonym: "antitrypanosomal drugs" RELATED [ChEBI] +synonym: "trypanocidal drugs" RELATED [ChEBI] +synonym: "trypanocide" RELATED [ChEBI] +synonym: "trypanosomicidal agents" RELATED [ChEBI] +is_a: CHEBI:35820 ! antiprotozoal drug + +[Term] +id: CHEBI:36338 +name: lepton +namespace: chebi_ontology +def: "Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin)." [] +subset: 3_STAR +synonym: "leptons" RELATED [ChEBI] +is_a: CHEBI:33233 ! fundamental particle +is_a: CHEBI:36340 ! fermion + +[Term] +id: CHEBI:36339 +name: baryon +namespace: chebi_ontology +def: "Baryon is a fermion that does experience the strong force (strong interaction). The term is derived from the Greek betaalpharhoupsilonsigma (heavy)." [] +subset: 3_STAR +synonym: "baryons" RELATED [ChEBI] +is_a: CHEBI:36340 ! fermion +is_a: CHEBI:36344 ! hadron + +[Term] +id: CHEBI:36340 +name: fermion +namespace: chebi_ontology +def: "Particle of half-integer spin quantum number following Fermi-Dirac statistics. Fermions are named after Enrico Fermi." [] +subset: 3_STAR +synonym: "fermion" EXACT IUPAC_NAME [IUPAC] +synonym: "fermions" RELATED [ChEBI] +is_a: CHEBI:36342 ! subatomic particle + +[Term] +id: CHEBI:36342 +name: subatomic particle +namespace: chebi_ontology +def: "A particle smaller than an atom." [] +subset: 3_STAR +synonym: "subatomic particles" RELATED [ChEBI] +is_a: BFO:0000030 ! object + +[Term] +id: CHEBI:36343 +name: composite particle +namespace: chebi_ontology +def: "A subatomic particle known to have substructure (i.e. consisting of smaller particles)." [] +subset: 3_STAR +synonym: "composite particles" RELATED [ChEBI] +is_a: CHEBI:36342 ! subatomic particle + +[Term] +id: CHEBI:36344 +name: hadron +namespace: chebi_ontology +def: "Hadron is a subatomic particle which experiences the strong force." [] +subset: 3_STAR +synonym: "hadrons" RELATED [ChEBI] +is_a: CHEBI:36343 ! composite particle + +[Term] +id: CHEBI:36347 +name: nuclear particle +namespace: chebi_ontology +def: "A nucleus or any of its constituents in any of their energy states." [] +subset: 3_STAR +synonym: "nuclear particle" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:36342 ! subatomic particle + +[Term] +id: CHEBI:36357 +name: polyatomic entity +namespace: chebi_ontology +def: "Any molecular entity consisting of more than one atom." [] +subset: 3_STAR +synonym: "polyatomic entities" RELATED [ChEBI] +is_a: CHEBI:23367 ! molecular entity +relationship: has_part CHEBI:24433 ! group +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:36358 +name: polyatomic ion +namespace: chebi_ontology +def: "An ion consisting of more than one atom." [] +subset: 3_STAR +synonym: "polyatomic ions" RELATED [ChEBI] +is_a: CHEBI:24870 ! ion +is_a: CHEBI:36357 ! polyatomic entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:36359 +name: phosphorus oxoacid derivative +namespace: chebi_ontology +subset: 3_STAR +synonym: "phosphorus oxoacid derivative" EXACT [ChEBI] +is_a: CHEBI:33241 ! oxoacid derivative +is_a: CHEBI:36360 ! phosphorus oxoacids and derivatives +relationship: has_functional_parent CHEBI:33457 ! phosphorus oxoacid + +[Term] +id: CHEBI:36360 +name: phosphorus oxoacids and derivatives +namespace: chebi_ontology +subset: 1_STAR +synonym: "phosphorus oxoacids and derivatives" EXACT [ChEBI] +is_a: CHEBI:26082 ! phosphorus molecular entity + +[Term] +id: CHEBI:36361 +name: phosphorous acid +namespace: chebi_ontology +alt_id: CHEBI:26081 +alt_id: CHEBI:29196 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "81.982" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "81.99578" RELATED MASS [ChEBI] +synonym: "[H]OP(O[H])O[H]" RELATED SMILES [ChEBI] +synonym: "[P(OH)3]" RELATED [IUPAC] +synonym: "H3O3P" RELATED FORMULA [ChEBI] +synonym: "H3PO3" RELATED [NIST_Chemistry_WebBook] +synonym: "H3PO3" RELATED [IUPAC] +synonym: "InChI=1S/H3O3P/c1-4(2)3/h1-3H" RELATED InChI [ChEBI] +synonym: "OJMIONKXNSYLSR-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "P(OH)3" RELATED [IUPAC] +synonym: "phosphite" RELATED [UniProt] +synonym: "phosphorige Saeure" RELATED [ChEBI] +synonym: "phosphorous acid" EXACT [IUPAC] +synonym: "trihydrogen trioxophosphate(3-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trihydroxidophosphorus" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxophosphoric(3-) acid" EXACT IUPAC_NAME [IUPAC] +xref: CAS:10294-56-1 "ChemIDplus" +xref: Gmelin:164068 "Gmelin" +is_a: CHEBI:33457 ! phosphorus oxoacid +relationship: is_conjugate_acid_of CHEBI:29258 ! dihydrogenphosphite +relationship: is_tautomer_of CHEBI:44976 ! phosphonic acid + +[Term] +id: CHEBI:36364 +name: alkaline earth salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "alkaline earth salts" RELATED [ChEBI] +is_a: CHEBI:24866 ! salt +is_a: CHEBI:33299 ! alkaline earth molecular entity + +[Term] +id: CHEBI:36416 +name: mancude organic heterotricyclic parent +namespace: chebi_ontology +subset: 3_STAR +synonym: "mancude organic heterotricyclic parents" RELATED [ChEBI] +synonym: "mancude-ring organic heterotricyclic parents" RELATED [ChEBI] +is_a: CHEBI:26979 ! organic heterotricyclic compound +is_a: CHEBI:35571 ! mancude organic heterocyclic parent + +[Term] +id: CHEBI:36421 +name: phenanthridine +namespace: chebi_ontology +def: "An azaarene that is the 9-aza derivative of phenanthrene. The parent of the class of phenanthridines." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "179.073" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "179.21730" RELATED MASS [ChEBI] +synonym: "3,4-benzoisoquinoline" RELATED [ChemIDplus] +synonym: "3,4-benzoquinoline" RELATED [NIST_Chemistry_WebBook] +synonym: "6-phenanthridine" RELATED [ChemIDplus] +synonym: "9-azaphenanthrene" RELATED [NIST_Chemistry_WebBook] +synonym: "benzo[c]quinoline" RELATED [NIST_Chemistry_WebBook] +synonym: "C13H9N" RELATED FORMULA [ChEBI] +synonym: "c1ccc2c(c1)cnc1ccccc21" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C13H9N/c1-2-6-11-10(5-1)9-14-13-8-4-3-7-12(11)13/h1-9H" RELATED InChI [ChEBI] +synonym: "phenanthridine" EXACT IUPAC_NAME [IUPAC] +synonym: "RDOWQLZANAYVLL-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:120204 "Beilstein" +xref: CAS:229-87-8 "ChemIDplus" +xref: PMID:18522130 "Europe PMC" +xref: PMID:24452525 "Europe PMC" +xref: PMID:24547771 "Europe PMC" +xref: Reaxys:120204 "Reaxys" +xref: Wikipedia:Phenanthridine +is_a: CHEBI:36416 ! mancude organic heterotricyclic parent +is_a: CHEBI:38180 ! polycyclic heteroarene +is_a: CHEBI:50893 ! azaarene +is_a: CHEBI:51245 ! phenanthridines + +[Term] +id: CHEBI:36481 +name: oleanane +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "412.407" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "412.73388" RELATED MASS [ChEBI] +synonym: "[H][C@]12CC[C@]3([H])[C@@]4(C)CCCC(C)(C)[C@]4([H])CC[C@@]3(C)[C@]1(C)CC[C@@]1(C)CCC(C)(C)C[C@@]21[H]" RELATED SMILES [ChEBI] +synonym: "C30H52" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C30H52/c1-25(2)16-17-27(5)18-19-29(7)21(22(27)20-25)10-11-24-28(6)14-9-13-26(3,4)23(28)12-15-30(24,29)8/h21-24H,9-20H2,1-8H3/t21-,22+,23+,24-,27-,28+,29-,30-/m1/s1" RELATED InChI [ChEBI] +synonym: "oleanane" EXACT IUPAC_NAME [IUPAC] +synonym: "VCNKUCWWHVTTBY-KQCVGMHHSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:3140799 "Beilstein" +is_a: CHEBI:35191 ! triterpene +is_a: CHEBI:35662 ! terpenoid fundamental parent + +[Term] +id: CHEBI:36562 +name: main-group coordination entity +namespace: chebi_ontology +def: "A coordination entity in which the central atom to which the ligands are attached comes from groups 1, 2, 13, 14, 15, 16, 17, or 18 of the periodic table." [] +subset: 3_STAR +synonym: "main group coordination compounds" RELATED [ChEBI] +synonym: "main-group coordination entities" RELATED [ChEBI] +is_a: CHEBI:33240 ! coordination entity +is_a: CHEBI:33579 ! main group molecular entity + +[Term] +id: CHEBI:36563 +name: zinc group coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "zinc group coordination compounds" RELATED [ChEBI] +synonym: "zinc group coordination entities" RELATED [ChEBI] +is_a: CHEBI:33240 ! coordination entity +is_a: CHEBI:33673 ! zinc group molecular entity + +[Term] +id: CHEBI:36565 +name: cadmium coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "cadmium coordination compounds" RELATED [ChEBI] +synonym: "cadmium coordination entities" RELATED [ChEBI] +is_a: CHEBI:22978 ! cadmium molecular entity +is_a: CHEBI:36563 ! zinc group coordination entity + +[Term] +id: CHEBI:36572 +name: cyanide salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "cyanide salt" EXACT [ChEBI] +synonym: "cyanide salts" RELATED [ChEBI] +is_a: CHEBI:23424 ! cyanides +relationship: has_part CHEBI:17514 ! cyanide + +[Term] +id: CHEBI:36586 +name: carbonyl compound +namespace: chebi_ontology +def: "Any compound containing the carbonyl group, C=O. The term is commonly used in the restricted sense of aldehydes and ketones, although it actually includes carboxylic acids and derivatives." [] +subset: 3_STAR +synonym: "carbonyl compounds" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:36587 ! organic oxo compound +is_a: CHEBI:36963 ! organooxygen compound +relationship: has_part CHEBI:23019 ! carbonyl group +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:36587 +name: organic oxo compound +namespace: chebi_ontology +def: "Organic compounds containing an oxygen atom, =O, doubly bonded to carbon or another element." [] +subset: 3_STAR +synonym: "organic oxo compounds" RELATED [ChEBI] +synonym: "oxo compounds" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:72695 ! organic molecule +relationship: has_part CHEBI:46629 ! oxo group +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:36615 +name: triterpenoid +namespace: chebi_ontology +alt_id: CHEBI:27151 +alt_id: CHEBI:9748 +def: "Any terpenoid derived from a triterpene. The term includes compounds in which the C30 skeleton of the parent triterpene has been rearranged or modified by the removal of one or more skeletal atoms (generally methyl groups)." [] +subset: 3_STAR +synonym: "Triterpenoid" EXACT [KEGG_COMPOUND] +synonym: "triterpenoides" RELATED [ChEBI] +synonym: "triterpenoids" RELATED [ChEBI] +xref: KEGG:C06085 +is_a: CHEBI:26873 ! terpenoid +relationship: has_parent_hydride CHEBI:35191 ! triterpene + +[Term] +id: CHEBI:36624 +name: naphthyridine +namespace: chebi_ontology +def: "Any one of eight organic heterobicyclic compounds that have a naphthalene skeleton in which two of the carbons are replaced by nitrogens. A 'closed' class." [] +subset: 3_STAR +synonym: "C8H6N2" RELATED FORMULA [ChEBI] +synonym: "naphthyridine" EXACT IUPAC_NAME [IUPAC] +xref: Wikipedia:Naphthyridine +is_a: CHEBI:35570 ! mancude organic heterobicyclic parent +is_a: CHEBI:50893 ! azaarene +is_a: CHEBI:52362 ! ortho-fused heteroarene + +[Term] +id: CHEBI:36628 +name: 1,8-naphthyridine +namespace: chebi_ontology +def: "A naphthyridine in which the nitrogens are situated at positions 1 and 8." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,8-diazanaphthalene" RELATED [NIST_Chemistry_WebBook] +synonym: "1,8-naphthyridine" EXACT IUPAC_NAME [IUPAC] +synonym: "1,8-pyridopyridine" RELATED [NIST_Chemistry_WebBook] +synonym: "130.053" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "130.14660" RELATED MASS [ChEBI] +synonym: "c1cnc2ncccc2c1" RELATED SMILES [ChEBI] +synonym: "C8H6N2" RELATED FORMULA [ChEBI] +synonym: "FLBAYUMRQUHISI-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C8H6N2/c1-3-7-4-2-6-10-8(7)9-5-1/h1-6H" RELATED InChI [ChEBI] +synonym: "napy" RELATED [IUPAC] +xref: Beilstein:109347 "Beilstein" +xref: CAS:254-60-4 "NIST Chemistry WebBook" +xref: Gmelin:27124 "Gmelin" +xref: Reaxys:109347 "Reaxys" +is_a: CHEBI:36624 ! naphthyridine + +[Term] +id: CHEBI:36654 +name: 2,3-dihydroxybenzoate +namespace: chebi_ontology +alt_id: CHEBI:11427 +alt_id: CHEBI:19319 +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "153.019" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "153.11220" RELATED MASS [ChEBI] +synonym: "2,3-Dihydroxybenzoate" EXACT [KEGG_COMPOUND] +synonym: "2,3-dihydroxybenzoate" EXACT [UniProt] +synonym: "2,3-dihydroxybenzoate" EXACT IUPAC_NAME [IUPAC] +synonym: "2-pyrocatechuate" RELATED [ChEBI] +synonym: "3-hydroxysalicylate" RELATED [ChEBI] +synonym: "C7H5O4" RELATED FORMULA [ChEBI] +synonym: "catechol-3-carboxylate" RELATED [ChEBI] +synonym: "GLDQAMYCGOIJDV-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C7H6O4/c8-5-3-1-2-4(6(5)9)7(10)11/h1-3,8-9H,(H,10,11)/p-1" RELATED InChI [ChEBI] +synonym: "Oc1cccc(C([O-])=O)c1O" RELATED SMILES [ChEBI] +xref: Beilstein:3666805 "Beilstein" +xref: KEGG:C00196 "ChEBI" +xref: UM-BBD_compID:c0056 "ChEBI" +is_a: CHEBI:36084 ! dihydroxybenzoate +relationship: has_functional_parent CHEBI:16150 ! benzoate +relationship: is_conjugate_base_of CHEBI:18026 ! 2,3-dihydroxybenzoic acid + +[Term] +id: CHEBI:36655 +name: glyoxylate +namespace: chebi_ontology +alt_id: CHEBI:14368 +alt_id: CHEBI:24420 +alt_id: CHEBI:35977 +def: "The conjugate base of glyoxylic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "72.993" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "73.02754" RELATED MASS [ChEBI] +synonym: "[H]C(=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C2HO3" RELATED FORMULA [ChEBI] +synonym: "Glyoxylat" RELATED [ChEBI] +synonym: "glyoxylate" EXACT [UniProt] +synonym: "HHLFWLYXYJOTON-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C2H2O3/c3-1-2(4)5/h1H,(H,4,5)/p-1" RELATED InChI [ChEBI] +synonym: "oxoacetate" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:3903641 "Beilstein" +xref: Gmelin:323497 "Gmelin" +xref: MetaCyc:GLYOX +is_a: CHEBI:35179 ! 2-oxo monocarboxylic acid anion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:16891 ! glyoxylic acid + +[Term] +id: CHEBI:36683 +name: organochlorine compound +namespace: chebi_ontology +def: "An organochlorine compound is a compound containing at least one carbon-chlorine bond." [] +subset: 3_STAR +synonym: "chloroorganic compounds" RELATED [ChEBI] +synonym: "chlororganische Verbindungen" RELATED [ChEBI] +synonym: "organochloride compound" RELATED [ChEBI] +synonym: "organochloride compounds" RELATED [ChEBI] +synonym: "organochlorine compound" EXACT [ChEBI] +synonym: "organochlorine compounds" RELATED [ChEBI] +xref: Wikipedia:Organochloride +is_a: CHEBI:23117 ! chlorine molecular entity +is_a: CHEBI:36684 ! organohalogen compound + +[Term] +id: CHEBI:36684 +name: organohalogen compound +namespace: chebi_ontology +def: "A compound containing at least one carbon-halogen bond." [] +subset: 3_STAR +synonym: "organohalogen compounds" RELATED [ChEBI] +is_a: CHEBI:33285 ! heteroorganic entity +is_a: CHEBI:37578 ! halide + +[Term] +id: CHEBI:36685 +name: chlorocarboxylic acid +namespace: chebi_ontology +def: "A carboxylic acid containing at least one chloro group." [] +subset: 3_STAR +synonym: "chlorocarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:33575 ! carboxylic acid +is_a: CHEBI:36683 ! organochlorine compound + +[Term] +id: CHEBI:36688 +name: heterotricyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "heterotricyclic compound" EXACT [ChEBI] +synonym: "heterotricyclic compounds" EXACT IUPAC_NAME [IUPAC] +synonym: "heterotricyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33671 ! heteropolycyclic compound + +[Term] +id: CHEBI:36699 +name: corticosteroid hormone +namespace: chebi_ontology +def: "Any of a class of steroid hormones that are produced in the adrenal cortex." [] +subset: 3_STAR +synonym: "adrenal cortex hormones" RELATED [ChEBI] +synonym: "corticosteroid hormones" RELATED [ChEBI] +is_a: CHEBI:26764 ! steroid hormone +is_a: CHEBI:50858 ! corticosteroid + +[Term] +id: CHEBI:36709 +name: aminoquinoline +namespace: chebi_ontology +subset: 3_STAR +synonym: "aminoquinoline" EXACT [ChEBI] +synonym: "aminoquinolines" RELATED [ChEBI] +is_a: CHEBI:26513 ! quinolines +is_a: CHEBI:33860 ! aromatic amine + +[Term] +id: CHEBI:36807 +name: hydrochloride +namespace: chebi_ontology +def: "A salt formally resulting from the reaction of hydrochloric acid with an organic base." [] +subset: 3_STAR +synonym: "Hydrochlorid" RELATED [ChEBI] +synonym: "hydrochloride salts" RELATED [ChEBI] +synonym: "hydrochlorides" RELATED [ChEBI] +is_a: CHEBI:36094 ! organic chloride salt + +[Term] +id: CHEBI:36816 +name: oxime O-ether +namespace: chebi_ontology +def: "O-organyl oximes R2C=NOR' (R' =/= H)." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "41.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[*]O\\N=C(/[*])[*]" RELATED SMILES [ChEBI] +synonym: "CNOR3" RELATED FORMULA [ChEBI] +synonym: "O-substituted oximes" RELATED [ChEBI] +synonym: "oxime ether" RELATED [ChEBI] +synonym: "oxime ethers" RELATED [ChEBI] +synonym: "oxime O-ether" EXACT [IUPAC] +synonym: "oxime O-ethers" EXACT IUPAC_NAME [IUPAC] +synonym: "oxime O-ethers" RELATED [ChEBI] +is_a: CHEBI:25698 ! ether +is_a: CHEBI:35352 ! organonitrogen compound + +[Term] +id: CHEBI:36820 +name: ring assembly +namespace: chebi_ontology +def: "Two or more cyclic systems (single rings or fused systems) which are directly joined to each other by double or single bonds are named ring assemblies when the number of such direct ring junctions is one less than the number of cyclic systems involved." [] +subset: 3_STAR +synonym: "ring assemblies" EXACT IUPAC_NAME [IUPAC] +synonym: "ring assembly" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33595 ! cyclic compound + +[Term] +id: CHEBI:36823 +name: pseudohalo group +namespace: chebi_ontology +subset: 3_STAR +synonym: "halogenoid group" RELATED [ChEBI] +synonym: "pseudohalide group" EXACT IUPAC_NAME [IUPAC] +synonym: "pseudohalido group" RELATED [ChEBI] +synonym: "pseudohalo groups" RELATED [ChEBI] +synonym: "pseudohalogen group" RELATED [IUPAC] +is_a: CHEBI:24433 ! group + +[Term] +id: CHEBI:36828 +name: pseudohalide anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "pseudohalide anions" RELATED [ChEBI] +synonym: "pseudohalide ions" EXACT IUPAC_NAME [IUPAC] +synonym: "pseudohalides" RELATED [ChEBI] +synonym: "pseudohalogen anion" RELATED [ChEBI] +synonym: "pseudohalogen ion" RELATED [ChEBI] +is_a: CHEBI:36829 ! polyatomic monoanion + +[Term] +id: CHEBI:36829 +name: polyatomic monoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "polyatomic monoanions" RELATED [ChEBI] +is_a: CHEBI:33273 ! polyatomic anion +is_a: CHEBI:36830 ! monoanion + +[Term] +id: CHEBI:36830 +name: monoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "monoanions" RELATED [ChEBI] +is_a: CHEBI:22563 ! anion + +[Term] +id: CHEBI:36834 +name: 3-hydroxy steroid +namespace: chebi_ontology +def: "Any hydroxy steroid carrying a hydroxy group at position 3." [] +subset: 3_STAR +synonym: "3-hydroxy steroids" RELATED [ChEBI] +is_a: CHEBI:35350 ! hydroxy steroid + +[Term] +id: CHEBI:36838 +name: 17-hydroxy steroid +namespace: chebi_ontology +def: "A hydroxy steroid carrying a hydroxy group at position 17." [] +subset: 3_STAR +synonym: "17-hydroxy steroids" RELATED [ChEBI] +is_a: CHEBI:35350 ! hydroxy steroid + +[Term] +id: CHEBI:36841 +name: 11-hydroxy steroid +namespace: chebi_ontology +subset: 3_STAR +synonym: "11-hydroxy steroids" RELATED [ChEBI] +is_a: CHEBI:35350 ! hydroxy steroid + +[Term] +id: CHEBI:36856 +name: hydrogen isocyanide +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "27.011" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "27.02538" RELATED MASS [ChEBI] +synonym: "[C-]#[NH+]" RELATED SMILES [ChEBI] +synonym: "CHN" RELATED FORMULA [ChEBI] +synonym: "CNH" RELATED [ChEBI] +synonym: "HN(+)#C(-)" RELATED [IUPAC] +synonym: "HNC" RELATED [NIST_Chemistry_WebBook] +synonym: "hydrogen isocyanide" EXACT [NIST_Chemistry_WebBook] +synonym: "hydroisocyanic acid" RELATED [ChEBI] +synonym: "InChI=1S/CHN/c1-2/h2H" RELATED InChI [ChEBI] +synonym: "nitriliomethanide" EXACT IUPAC_NAME [IUPAC] +synonym: "QIUBLANJVAOHHY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:2069401 "Beilstein" +xref: CAS:6914-07-4 "NIST Chemistry WebBook" +xref: Gmelin:113 "Gmelin" +is_a: CHEBI:33405 ! hydracid +relationship: is_conjugate_acid_of CHEBI:17514 ! cyanide +relationship: is_tautomer_of CHEBI:18407 ! hydrogen cyanide + +[Term] +id: CHEBI:36871 +name: inorganic radical +namespace: chebi_ontology +subset: 3_STAR +synonym: "inorganic radicals" RELATED [ChEBI] +is_a: CHEBI:24835 ! inorganic molecular entity +is_a: CHEBI:26519 ! radical + +[Term] +id: CHEBI:36873 +name: radical anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "anion radical" RELATED [IUPAC] +synonym: "radical anion" EXACT IUPAC_NAME [IUPAC] +synonym: "radical anions" RELATED [ChEBI] +is_a: CHEBI:22563 ! anion +is_a: CHEBI:36875 ! radical ion + +[Term] +id: CHEBI:36875 +name: radical ion +namespace: chebi_ontology +def: "A radical that carries an electric charge." [] +subset: 3_STAR +synonym: "ion radical" RELATED [IUPAC] +synonym: "radical ion" EXACT IUPAC_NAME [IUPAC] +synonym: "radical ions" RELATED [IUPAC] +is_a: CHEBI:24870 ! ion +is_a: CHEBI:26519 ! radical + +[Term] +id: CHEBI:36876 +name: inorganic radical anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "inorganic anion radical" RELATED [ChEBI] +synonym: "inorganic radical anions" RELATED [ChEBI] +is_a: CHEBI:36873 ! radical anion +is_a: CHEBI:36878 ! inorganic radical ion + +[Term] +id: CHEBI:36878 +name: inorganic radical ion +namespace: chebi_ontology +subset: 3_STAR +synonym: "inorganic ion radical" RELATED [ChEBI] +synonym: "inorganic radical ions" RELATED [ChEBI] +is_a: CHEBI:36871 ! inorganic radical +is_a: CHEBI:36875 ! radical ion + +[Term] +id: CHEBI:36885 +name: 20-oxo steroid +namespace: chebi_ontology +def: "An oxo steroid carrying an oxo group at position 20." [] +subset: 3_STAR +synonym: "20-oxo steroids" RELATED [ChEBI] +is_a: CHEBI:35789 ! oxo steroid + +[Term] +id: CHEBI:36894 +name: elemental bromine +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:33434 ! elemental halogen + +[Term] +id: CHEBI:36896 +name: monoatomic bromine +namespace: chebi_ontology +subset: 3_STAR +synonym: "atomic bromine" RELATED [ChEBI] +synonym: "Br" RELATED FORMULA [ChEBI] +is_a: CHEBI:36894 ! elemental bromine + +[Term] +id: CHEBI:36902 +name: chalcogen hydride +namespace: chebi_ontology +subset: 3_STAR +synonym: "chalcogen hydride" EXACT [ChEBI] +synonym: "chalcogen hydrides" RELATED [ChEBI] +is_a: CHEBI:33242 ! inorganic hydride +is_a: CHEBI:33304 ! chalcogen molecular entity + +[Term] +id: CHEBI:36914 +name: inorganic ion +namespace: chebi_ontology +subset: 3_STAR +synonym: "inorganic ions" RELATED [ChEBI] +is_a: CHEBI:24835 ! inorganic molecular entity +is_a: CHEBI:24870 ! ion + +[Term] +id: CHEBI:36915 +name: inorganic cation +namespace: chebi_ontology +subset: 3_STAR +synonym: "inorganic cations" RELATED [ChEBI] +is_a: CHEBI:36914 ! inorganic ion +is_a: CHEBI:36916 ! cation + +[Term] +id: CHEBI:36916 +name: cation +namespace: chebi_ontology +alt_id: CHEBI:23058 +alt_id: CHEBI:3473 +def: "A monoatomic or polyatomic species having one or more elementary charges of the proton." [] +subset: 3_STAR +synonym: "Cation" EXACT [KEGG_COMPOUND] +synonym: "cation" EXACT IUPAC_NAME [IUPAC] +synonym: "cation" EXACT [ChEBI] +synonym: "cationes" RELATED [ChEBI] +synonym: "cations" RELATED [ChEBI] +synonym: "Kation" RELATED [ChEBI] +synonym: "Kationen" RELATED [ChEBI] +xref: KEGG:C01373 +is_a: CHEBI:24870 ! ion +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:36919 +name: antimony molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "antimony compounds" RELATED [ChEBI] +synonym: "antimony molecular entities" RELATED [ChEBI] +synonym: "antimony molecular entity" EXACT [ChEBI] +is_a: CHEBI:33302 ! pnictogen molecular entity +relationship: has_part CHEBI:30513 ! antimony atom + +[Term] +id: CHEBI:36920 +name: antimony oxoacid +namespace: chebi_ontology +subset: 3_STAR +synonym: "antimony oxoacids" RELATED [ChEBI] +synonym: "oxoacids of antimony" RELATED [ChEBI] +is_a: CHEBI:33408 ! pnictogen oxoacid +is_a: CHEBI:50007 ! antimony coordination entity + +[Term] +id: CHEBI:36921 +name: antimony oxoanion +namespace: chebi_ontology +subset: 3_STAR +synonym: "antimony oxoanion" EXACT [ChEBI] +synonym: "antimony oxoanions" RELATED [ChEBI] +synonym: "oxoanions of antimony" RELATED [ChEBI] +is_a: CHEBI:24834 ! inorganic anion +is_a: CHEBI:33459 ! pnictogen oxoanion +is_a: CHEBI:50007 ! antimony coordination entity + +[Term] +id: CHEBI:36961 +name: chalcocarbonic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "chalcocarbonic acid" EXACT [ChEBI] +synonym: "chalcocarbonic acids" EXACT IUPAC_NAME [IUPAC] +synonym: "chalcocarbonic acids" RELATED [ChEBI] +is_a: CHEBI:36962 ! organochalcogen compound + +[Term] +id: CHEBI:36962 +name: organochalcogen compound +namespace: chebi_ontology +def: "An organochalcogen compound is a compound containing at least one carbon-chalcogen bond." [] +subset: 3_STAR +synonym: "organochalcogen compound" EXACT [ChEBI] +synonym: "organochalcogen compounds" RELATED [ChEBI] +is_a: CHEBI:33285 ! heteroorganic entity +is_a: CHEBI:33304 ! chalcogen molecular entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:36963 +name: organooxygen compound +namespace: chebi_ontology +def: "An organochalcogen compound containing at least one carbon-oxygen bond." [] +subset: 3_STAR +synonym: "organooxygen compound" EXACT [ChEBI] +synonym: "organooxygen compounds" RELATED [ChEBI] +xref: PMID:17586126 "Europe PMC" +is_a: CHEBI:25806 ! oxygen molecular entity +is_a: CHEBI:36962 ! organochalcogen compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:36976 +name: nucleotide +namespace: chebi_ontology +alt_id: CHEBI:13215 +alt_id: CHEBI:13663 +alt_id: CHEBI:7656 +def: "A nucleotide is a nucleoside phosphate resulting from the condensation of the 3 or 5 hydroxy group of a nucleoside with phosphoric acid." [] +subset: 3_STAR +synonym: "a nucleotide" RELATED [UniProt] +synonym: "Nucleotide" EXACT [KEGG_COMPOUND] +synonym: "nucleotides" RELATED [ChEBI] +xref: KEGG:C00215 +is_a: CHEBI:25608 ! nucleoside phosphate + +[Term] +id: CHEBI:36982 +name: cyclic purine nucleotide +namespace: chebi_ontology +subset: 3_STAR +synonym: "cyclic purine nucleotides" RELATED [ChEBI] +is_a: CHEBI:23447 ! cyclic nucleotide +is_a: CHEBI:26395 ! purine nucleotide + +[Term] +id: CHEBI:37010 +name: ribonucleoside 5'-monophosphate +namespace: chebi_ontology +alt_id: CHEBI:1976 +alt_id: CHEBI:1977 +alt_id: CHEBI:20500 +alt_id: CHEBI:36996 +subset: 3_STAR +synonym: "ribonucleoside 5'-monophosphates" RELATED [ChEBI] +is_a: CHEBI:26558 ! ribonucleoside monophosphate +is_a: CHEBI:37015 ! ribonucleoside 5'-phosphate + +[Term] +id: CHEBI:37015 +name: ribonucleoside 5'-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ribonucleoside 5'-phosphates" RELATED [ChEBI] +is_a: CHEBI:16701 ! nucleoside 5'-phosphate +is_a: CHEBI:26561 ! ribonucleotide + +[Term] +id: CHEBI:37016 +name: 2'-deoxyribonucleoside 5'-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "2'-deoxyribonucleoside 5'-phosphates" RELATED [ChEBI] +is_a: CHEBI:16701 ! nucleoside 5'-phosphate +is_a: CHEBI:19260 ! 2'-deoxyribonucleotide + +[Term] +id: CHEBI:37021 +name: purine ribonucleoside 5'-monophosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine ribonucleoside 5'-monophosphates" RELATED [ChEBI] +is_a: CHEBI:26397 ! purine ribonucleoside monophosphate +is_a: CHEBI:26400 ! purine ribonucleotide +is_a: CHEBI:37010 ! ribonucleoside 5'-monophosphate + +[Term] +id: CHEBI:37022 +name: amino-acid anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "amino acid anions" RELATED [ChEBI] +synonym: "amino-acid anion" EXACT [ChEBI] +synonym: "amino-acid anions" RELATED [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion +is_a: CHEBI:35352 ! organonitrogen compound +relationship: is_conjugate_base_of CHEBI:33709 ! amino acid + +[Term] +id: CHEBI:37038 +name: purine ribonucleoside 5'-diphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine ribonucleoside 5'-diphosphates" RELATED [ChEBI] +is_a: CHEBI:26396 ! purine ribonucleoside diphosphate +is_a: CHEBI:26400 ! purine ribonucleotide +is_a: CHEBI:37075 ! ribonucleoside 5'-diphosphate + +[Term] +id: CHEBI:37042 +name: purine 2'-deoxyribonucleoside 5'-triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine 2'-deoxyribonucleoside 5'-triphosphates" RELATED [ChEBI] +is_a: CHEBI:16381 ! 2'-deoxyribonucleoside 5'-triphosphate +is_a: CHEBI:26389 ! purine deoxyribonucleoside triphosphate +is_a: CHEBI:26390 ! purine 2'-deoxyribonucleotide + +[Term] +id: CHEBI:37044 +name: pyrimidine ribonucleoside 5'-triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "pyrimidine ribonucleoside 5'-triphosphates" RELATED [ChEBI] +is_a: CHEBI:26444 ! pyrimidine ribonucleoside triphosphate +is_a: CHEBI:26446 ! pyrimidine ribonucleotide +is_a: CHEBI:37076 ! ribonucleoside 5'-triphosphate + +[Term] +id: CHEBI:37045 +name: purine ribonucleoside 5'-triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "purine ribonucleoside 5'-triphosphates" RELATED [ChEBI] +is_a: CHEBI:26398 ! purine ribonucleoside triphosphate +is_a: CHEBI:26400 ! purine ribonucleotide +is_a: CHEBI:37076 ! ribonucleoside 5'-triphosphate + +[Term] +id: CHEBI:37075 +name: ribonucleoside 5'-diphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ribonucleoside 5'-diphosphates" RELATED [ChEBI] +is_a: CHEBI:37015 ! ribonucleoside 5'-phosphate + +[Term] +id: CHEBI:37076 +name: ribonucleoside 5'-triphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "ribonucleoside 5'-triphosphates" RELATED [ChEBI] +is_a: CHEBI:37015 ! ribonucleoside 5'-phosphate + +[Term] +id: CHEBI:37080 +name: acrylate +namespace: chebi_ontology +alt_id: CHEBI:13721 +alt_id: CHEBI:35937 +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "2-propenoate" RELATED [ChemIDplus] +synonym: "2-propenoic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "71.013" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "71.05472" RELATED MASS [ChEBI] +synonym: "[O-]C(=O)C=C" RELATED SMILES [ChEBI] +synonym: "acrylate" EXACT [UniProt] +synonym: "C3H3O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H4O2/c1-2-3(4)5/h2H,1H2,(H,4,5)/p-1" RELATED InChI [ChEBI] +synonym: "NIXOWILDQLNWCW-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "prop-2-enoate" EXACT IUPAC_NAME [IUPAC] +synonym: "Propenoate" RELATED [KEGG_COMPOUND] +xref: Beilstein:3535778 "Beilstein" +xref: Beilstein:3931336 "Beilstein" +xref: CAS:10344-93-1 "ChemIDplus" +xref: Gmelin:323518 "Gmelin" +xref: KEGG:C00511 +xref: UM-BBD_compID:c0113 "UM-BBD" +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:18308 ! acrylic acid + +[Term] +id: CHEBI:37096 +name: adenosine 5'-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "adenosine 5'-phosphates" RELATED [ChEBI] +is_a: CHEBI:22256 ! adenosine phosphate +is_a: CHEBI:37021 ! purine ribonucleoside 5'-monophosphate + +[Term] +id: CHEBI:37121 +name: guanosine 5'-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "guanosine 5'-phosphates" RELATED [ChEBI] +is_a: CHEBI:24455 ! guanosine phosphate + +[Term] +id: CHEBI:37123 +name: nucleoside bisphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "nucleoside bisphosphates" RELATED [ChEBI] +is_a: CHEBI:25608 ! nucleoside phosphate + +[Term] +id: CHEBI:37143 +name: organofluorine compound +namespace: chebi_ontology +def: "An organofluorine compound is a compound containing at least one carbon-fluorine bond." [] +subset: 3_STAR +synonym: "fluoroorganic compound" RELATED [ChEBI] +synonym: "fluoroorganic compounds" RELATED [ChEBI] +synonym: "fluoroorganics" RELATED [ChEBI] +synonym: "fluororganische Verbindungen" RELATED [ChEBI] +synonym: "organofluorine compound" EXACT [ChEBI] +synonym: "organofluorine compounds" RELATED [ChEBI] +is_a: CHEBI:24062 ! fluorine molecular entity +is_a: CHEBI:36684 ! organohalogen compound + +[Term] +id: CHEBI:37154 +name: fumarate(1-) +namespace: chebi_ontology +def: "A hydrogen butenedioate obtained by deprotonation of one of the carboxy groups of fumaric acid." [] +subset: 3_STAR +synonym: "(2E)-3-carboxyacrylate" RELATED [IUPAC] +synonym: "(2E)-3-carboxyprop-2-enoate" EXACT IUPAC_NAME [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "115.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "115.06422" RELATED MASS [ChEBI] +synonym: "C4H3O4" RELATED FORMULA [ChEBI] +synonym: "fumarate monoanion" RELATED [ChEBI] +synonym: "hydrogen fumarate" RELATED [ChEBI] +synonym: "InChI=1S/C4H4O4/c5-3(6)1-2-4(7)8/h1-2H,(H,5,6)(H,7,8)/p-1/b2-1+" RELATED InChI [ChEBI] +synonym: "OC(=O)\\C=C\\C([O-])=O" RELATED SMILES [ChEBI] +synonym: "VZCYOOQTPOCHFL-OWOJBTEDSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:1906438 "Beilstein" +xref: Gmelin:325290 "Gmelin" +xref: Reaxys:1906438 "Reaxys" +is_a: CHEBI:37155 ! hydrogen butenedioate +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:29806 ! fumarate(2-) +relationship: is_conjugate_base_of CHEBI:18012 ! fumaric acid + +[Term] +id: CHEBI:37155 +name: hydrogen butenedioate +namespace: chebi_ontology +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "115.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "115.06422" RELATED MASS [ChEBI] +synonym: "3-carboxyacrylate" RELATED [IUPAC] +synonym: "3-carboxyprop-2-enoate" EXACT IUPAC_NAME [IUPAC] +synonym: "[H]C(=C([H])C([O-])=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "C4H3O4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H4O4/c5-3(6)1-2-4(7)8/h1-2H,(H,5,6)(H,7,8)/p-1" RELATED InChI [ChEBI] +synonym: "VZCYOOQTPOCHFL-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:5244783 "Beilstein" +xref: Gmelin:1342303 "Gmelin" +is_a: CHEBI:35695 ! dicarboxylic acid monoanion +relationship: is_conjugate_acid_of CHEBI:36180 ! butenedioate +relationship: is_conjugate_base_of CHEBI:22958 ! butenedioic acid + +[Term] +id: CHEBI:37156 +name: maleate(1-) +namespace: chebi_ontology +def: "A hydrogen butenedioate that is the conjugate base of maleic acid." [] +subset: 3_STAR +synonym: "(2Z)-3-carboxyacrylate" RELATED [IUPAC] +synonym: "(2Z)-3-carboxyprop-2-enoate" EXACT IUPAC_NAME [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "115.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "115.06422" RELATED MASS [ChEBI] +synonym: "C4H3O4" RELATED FORMULA [ChEBI] +synonym: "Hmale" RELATED [IUPAC] +synonym: "hydrogen maleate" RELATED [ChEBI] +synonym: "InChI=1S/C4H4O4/c5-3(6)1-2-4(7)8/h1-2H,(H,5,6)(H,7,8)/p-1/b2-1-" RELATED InChI [ChEBI] +synonym: "OC(=O)\\C=C/C([O-])=O" RELATED SMILES [ChEBI] +synonym: "VZCYOOQTPOCHFL-UPHRSURJSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3537457 "Beilstein" +xref: Gmelin:325289 "Gmelin" +xref: Reaxys:3537457 "Reaxys" +is_a: CHEBI:132951 ! maleate +is_a: CHEBI:37155 ! hydrogen butenedioate +relationship: is_conjugate_acid_of CHEBI:30780 ! maleate(2-) + +[Term] +id: CHEBI:37163 +name: glucan +namespace: chebi_ontology +alt_id: CHEBI:24255 +alt_id: CHEBI:5392 +def: "A polysaccharide composed of glucose residues." [] +subset: 3_STAR +synonym: "C12H22O11(C6H10O5)n" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Glucan" EXACT [KEGG_COMPOUND] +synonym: "glucan" EXACT IUPAC_NAME [IUPAC] +synonym: "glucans" RELATED [ChEBI] +xref: CAS:9037-91-6 "ChemIDplus" +xref: KEGG:C01379 +is_a: CHEBI:37164 ! homopolysaccharide + +[Term] +id: CHEBI:37164 +name: homopolysaccharide +namespace: chebi_ontology +def: "Glycans composed of a single type of monosaccharide residue. They are named by replacing the ending '-ose' of the sugar by '-an'." [] +subset: 3_STAR +synonym: "homoglycan" RELATED [IUPAC] +synonym: "homopolysaccharide" EXACT IUPAC_NAME [IUPAC] +synonym: "homopolysaccharides" RELATED [ChEBI] +is_a: CHEBI:18154 ! polysaccharide + +[Term] +id: CHEBI:37175 +name: organic hydride +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic hydrides" RELATED [ChEBI] +is_a: CHEBI:33692 ! hydrides + +[Term] +id: CHEBI:37176 +name: mononuclear parent hydride +namespace: chebi_ontology +subset: 3_STAR +synonym: "mononuclear hydride" RELATED [ChEBI] +synonym: "mononuclear hydrides" RELATED [IUPAC] +synonym: "mononuclear parent hydrides" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33692 ! hydrides + +[Term] +id: CHEBI:37185 +name: lead coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "lead coordination compounds" RELATED [ChEBI] +synonym: "lead coordination entities" RELATED [ChEBI] +synonym: "lead coordination entity" EXACT [ChEBI] +is_a: CHEBI:33585 ! lead molecular entity +is_a: CHEBI:36562 ! main-group coordination entity + +[Term] +id: CHEBI:37193 +name: elemental lead +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:33585 ! lead molecular entity + +[Term] +id: CHEBI:37206 +name: hexol +namespace: chebi_ontology +def: "A polyol that contains 6 hydroxy groups." [] +subset: 3_STAR +synonym: "hexol" EXACT IUPAC_NAME [IUPAC] +synonym: "hexols" RELATED [ChEBI] +is_a: CHEBI:26191 ! polyol + +[Term] +id: CHEBI:37217 +name: titanium molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "titanium compounds" RELATED [ChEBI] +synonym: "titanium molecular entities" RELATED [ChEBI] +synonym: "titanium molecular entity" EXACT [ChEBI] +is_a: CHEBI:33768 ! titanium group molecular entity +relationship: has_part CHEBI:33341 ! titanium atom + +[Term] +id: CHEBI:37240 +name: adenosine 3',5'-bisphosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "adenosine 3',5'-bisphosphates" RELATED [ChEBI] +is_a: CHEBI:22251 ! adenosine bisphosphate + +[Term] +id: CHEBI:37246 +name: elemental sodium +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:26712 ! sodium molecular entity + +[Term] +id: CHEBI:37247 +name: elemental potassium +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:26217 ! potassium molecular entity + +[Term] +id: CHEBI:37253 +name: elemental zinc +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:27364 ! zinc molecular entity + +[Term] +id: CHEBI:37261 +name: cerium molecular entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "cerium compounds" RELATED [ChEBI] +synonym: "cerium molecular entities" RELATED [ChEBI] +synonym: "cerium molecular entity" EXACT [ChEBI] +is_a: CHEBI:33775 ! lanthanoid molecular entity +relationship: has_part CHEBI:33369 ! cerium + +[Term] +id: CHEBI:37262 +name: cerium coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "cerium coordination compounds" RELATED [ChEBI] +synonym: "cerium coordination entities" RELATED [ChEBI] +synonym: "cerium coordination entity" EXACT [ChEBI] +is_a: CHEBI:35728 ! lanthanoid coordination entity +is_a: CHEBI:37261 ! cerium molecular entity + +[Term] +id: CHEBI:37334 +name: diagnostic imaging agent +namespace: chebi_ontology +def: "A substance administered to enhance contrast in images of the inside of the body obtained using X-rays, gamma-rays, sound waves, radio waves (MRI), or radioactive particles in order to diagnose disease." [] +subset: 3_STAR +is_a: CHEBI:33295 ! diagnostic agent + +[Term] +id: CHEBI:37335 +name: MRI contrast agent +namespace: chebi_ontology +subset: 1_STAR +synonym: "magnetic resonance imaging contrast agent" RELATED [ChEBI] +is_a: CHEBI:37334 ! diagnostic imaging agent + +[Term] +id: CHEBI:37404 +name: elemental copper +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:23377 ! copper molecular entity + +[Term] +id: CHEBI:37416 +name: EC 2.7.7.6 (RNA polymerase) inhibitor +namespace: chebi_ontology +def: "An EC 2.7.7.* (nucleotidyltransferase) inhibitor that interferes with the action of RNA polymerase (EC 2.7.7.6)." [] +subset: 3_STAR +synonym: "C ribonucleic acid formation factors inhibitor" RELATED [ChEBI] +synonym: "C ribonucleic acid formation factors inhibitors" RELATED [ChEBI] +synonym: "C RNA formation factors inhibitor" RELATED [ChEBI] +synonym: "C RNA formation factors inhibitors" RELATED [ChEBI] +synonym: "deoxyribonucleic acid-dependent ribonucleic acid polymerase inhibitor" RELATED [ChEBI] +synonym: "deoxyribonucleic acid-dependent ribonucleic acid polymerase inhibitors" RELATED [ChEBI] +synonym: "directed RNA polymerase inhibitor" RELATED [ChEBI] +synonym: "DNA-dependent ribonucleate nucleotidyltransferase inhibitor" RELATED [ChEBI] +synonym: "DNA-dependent ribonucleate nucleotidyltransferase inhibitors" RELATED [ChEBI] +synonym: "DNA-dependent RNA nucleotidyltransferase inhibitor" RELATED [ChEBI] +synonym: "DNA-dependent RNA nucleotidyltransferase inhibitors" RELATED [ChEBI] +synonym: "DNA-dependent RNA polymerase inhibitor" RELATED [ChEBI] +synonym: "DNA-dependent RNA polymerase inhibitors" RELATED [ChEBI] +synonym: "DNA-directed nucleoside-triphosphate:RNA nucleotidyltransferase inhibitor" RELATED [ChEBI] +synonym: "DNA-directed nucleoside-triphosphate:RNA nucleotidyltransferase inhibitors" RELATED [ChEBI] +synonym: "DNA-directed RNA polymerase inhibitor" RELATED [ChEBI] +synonym: "DNA-directed RNA polymerase inhibitors" RELATED [ChEBI] +synonym: "EC 2.7.7.6 (RNA polymerase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.7.7.6 inhibitor" RELATED [ChEBI] +synonym: "EC 2.7.7.6 inhibitors" RELATED [ChEBI] +synonym: "nucleoside-triphosphate:RNA nucleotidyltransferase (DNA-directed) inhibitor" RELATED [ChEBI] +synonym: "nucleoside-triphosphate:RNA nucleotidyltransferase (DNA-directed) inhibitors" RELATED [ChEBI] +synonym: "ribonucleate nucleotidyltransferase inhibitor" RELATED [ChEBI] +synonym: "ribonucleate nucleotidyltransferase inhibitors" RELATED [ChEBI] +synonym: "ribonucleate polymerase inhibitor" RELATED [ChEBI] +synonym: "ribonucleate polymerase inhibitors" RELATED [ChEBI] +synonym: "ribonucleic acid nucleotidyltransferase inhibitor" RELATED [ChEBI] +synonym: "ribonucleic acid nucleotidyltransferase inhibitors" RELATED [ChEBI] +synonym: "ribonucleic acid polymerase inhibitor" RELATED [ChEBI] +synonym: "ribonucleic acid polymerase inhibitors" RELATED [ChEBI] +synonym: "ribonucleic acid transcriptase inhibitor" RELATED [ChEBI] +synonym: "ribonucleic acid transcriptase inhibitors" RELATED [ChEBI] +synonym: "ribonucleic polymerase inhibitor" RELATED [ChEBI] +synonym: "ribonucleic polymerase inhibitors" RELATED [ChEBI] +synonym: "ribonucleic transcriptase inhibitor" RELATED [ChEBI] +synonym: "ribonucleic transcriptase inhibitors" RELATED [ChEBI] +synonym: "RNA nucleotidyltransferase (DNA-directed) inhibitor" RELATED [ChEBI] +synonym: "RNA nucleotidyltransferase (DNA-directed) inhibitors" RELATED [ChEBI] +synonym: "RNA nucleotidyltransferase inhibitor" RELATED [ChEBI] +synonym: "RNA nucleotidyltransferase inhibitors" RELATED [ChEBI] +synonym: "RNA polymerase (EC 2.7.7.6) inhibitor" RELATED [ChEBI] +synonym: "RNA polymerase (EC 2.7.7.6) inhibitors" RELATED [ChEBI] +synonym: "RNA polymerase I inhibitor" RELATED [ChEBI] +synonym: "RNA polymerase I inhibitors" RELATED [ChEBI] +synonym: "RNA polymerase II inhibitor" RELATED [ChEBI] +synonym: "RNA polymerase II inhibitors" RELATED [ChEBI] +synonym: "RNA polymerase III inhibitor" RELATED [ChEBI] +synonym: "RNA polymerase III inhibitors" RELATED [ChEBI] +synonym: "RNA polymerase inhibitor" RELATED [ChEBI] +synonym: "RNA polymerase inhibitors" RELATED [ChEBI] +synonym: "RNA transcriptase inhibitor" RELATED [ChEBI] +synonym: "RNA transcriptase inhibitors" RELATED [ChEBI] +synonym: "transcriptase inhibitor" RELATED [ChEBI] +synonym: "transcriptase inhibitors" RELATED [ChEBI] +xref: Wikipedia:RNA_polymerase +is_a: CHEBI:76815 ! EC 2.7.7.* (nucleotidyltransferase) inhibitor + +[Term] +id: CHEBI:37527 +name: acid +namespace: chebi_ontology +alt_id: CHEBI:13800 +alt_id: CHEBI:13801 +alt_id: CHEBI:22209 +alt_id: CHEBI:2426 +def: "An acid is a molecular entity capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid)." [] +subset: 3_STAR +synonym: "Acid" EXACT [KEGG_COMPOUND] +synonym: "acid" EXACT IUPAC_NAME [IUPAC] +synonym: "acide" RELATED [IUPAC] +synonym: "acido" RELATED [ChEBI] +synonym: "acids" RELATED [ChEBI] +synonym: "an acid" RELATED [UniProt] +synonym: "Saeure" RELATED [ChEBI] +synonym: "Saeuren" RELATED [ChEBI] +xref: KEGG:C00174 +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:37528 +name: sn-glycerol 1-phosphates +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:26707 ! glycerol phosphate + +[Term] +id: CHEBI:37563 +name: CTP(4-) +namespace: chebi_ontology +def: "A nucleoside triphosphate(4-) obtained by global deprotonation of the triphosphate OH groups of CTP; major species present at pH 7.3." [] +subset: 3_STAR +synonym: "-4" RELATED CHARGE [ChEBI] +synonym: "478.953" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "479.12468" RELATED MASS [ChEBI] +synonym: "C9H12N3O14P3" RELATED FORMULA [ChEBI] +synonym: "CTP" RELATED [UniProt] +synonym: "ctp" RELATED [ChEBI] +synonym: "cytidine 5'-triphosphate(4-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C9H16N3O14P3/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H2,10,11,15)(H2,16,17,18)/p-4/t4-,6-,7-,8-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]2O)c(=O)n1" RELATED SMILES [ChEBI] +synonym: "PCDQPRRSZKQHHS-XVFCMESISA-J" RELATED InChIKey [ChEBI] +xref: Beilstein:4732530 "Beilstein" +xref: Gmelin:1265115 "Gmelin" +is_a: CHEBI:61557 ! nucleoside triphosphate(4-) +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:17677 ! CTP + +[Term] +id: CHEBI:37565 +name: GTP(4-) +namespace: chebi_ontology +def: "A nucleoside triphosphate(4-) obtained by global deprotonation of the triphosphate OH groups of GTP; major species present at pH 7.3." [] +subset: 3_STAR +synonym: "-4" RELATED CHARGE [ChEBI] +synonym: "518.959" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "519.14886" RELATED MASS [ChEBI] +synonym: "C10H12N5O14P3" RELATED FORMULA [ChEBI] +synonym: "GTP" RELATED [UniProt] +synonym: "gtp" RELATED [ChEBI] +synonym: "guanosine 5'-triphosphate(4-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C10H16N5O14P3/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,13,14,18)/p-4/t3-,5-,6-,9-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "XKMLYUALXHKNFT-UUOKFMHZSA-J" RELATED InChIKey [ChEBI] +xref: Beilstein:5211792 "Beilstein" +xref: Gmelin:1264613 "Gmelin" +is_a: CHEBI:61557 ! nucleoside triphosphate(4-) +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:57600 ! GTP(3-) + +[Term] +id: CHEBI:37577 +name: heteroatomic molecular entity +namespace: chebi_ontology +def: "A molecular entity consisting of two or more chemical elements." [] +subset: 3_STAR +synonym: "chemical compound" RELATED [ChEBI] +synonym: "heteroatomic molecular entities" RELATED [ChEBI] +is_a: CHEBI:36357 ! polyatomic entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:37578 +name: halide +namespace: chebi_ontology +def: "Any heteroatomic molecular entity that is a chemical compound of halogen with other chemical elements." [] +subset: 3_STAR +synonym: "halides" RELATED [ChEBI] +xref: Wikipedia:Halide +is_a: CHEBI:24471 ! halogen molecular entity +is_a: CHEBI:37577 ! heteroatomic molecular entity + +[Term] +id: CHEBI:37581 +name: gamma-lactone +namespace: chebi_ontology +alt_id: CHEBI:13194 +alt_id: CHEBI:18937 +alt_id: CHEBI:22971 +alt_id: CHEBI:541 +def: "A lactone having a five-membered lactone ring." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1,4-Lactone" RELATED [KEGG_COMPOUND] +synonym: "1,4-lactones" RELATED [ChEBI] +synonym: "83.013" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "83.066" RELATED MASS [ChEBI] +synonym: "a 1,4-lactone" RELATED [UniProt] +synonym: "butyrolactones" RELATED [ChEBI] +synonym: "C4H3O2R3" RELATED FORMULA [ChEBI] +synonym: "gamma-lactona" RELATED [ChEBI] +synonym: "gamma-lactonas" RELATED [ChEBI] +synonym: "gamma-lactones" RELATED [ChEBI] +synonym: "gamma-Laktone" RELATED [ChEBI] +synonym: "O1C(C(C(C1=O)*)*)*" RELATED SMILES [ChEBI] +xref: PMID:18789684 "Europe PMC" +is_a: CHEBI:25000 ! lactone + +[Term] +id: CHEBI:37622 +name: carboxamide +namespace: chebi_ontology +alt_id: CHEBI:35354 +alt_id: CHEBI:35355 +def: "An amide of a carboxylic acid, having the structure RC(=O)NR2. The term is used as a suffix in systematic name formation to denote the -C(=O)NH2 group including its carbon atom." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "41.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "42.01680" RELATED MASS [ChEBI] +synonym: "[*]C(=O)N([*])[*]" RELATED SMILES [ChEBI] +synonym: "carboxamides" EXACT IUPAC_NAME [IUPAC] +synonym: "carboxamides" RELATED [ChEBI] +synonym: "CNOR3" RELATED FORMULA [ChEBI] +synonym: "primary carboxamide" RELATED [ChEBI] +is_a: CHEBI:33256 ! primary amide +is_a: CHEBI:35352 ! organonitrogen compound +is_a: CHEBI:36963 ! organooxygen compound +relationship: has_part CHEBI:23004 ! carbamoyl group +property_value: http://purl.obolibrary.org/obo/chebi/formula "CNOR3" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/mass "42.01680" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "41.998" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/smiles "[*]C(=O)N([*])[*]" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:37659 +name: oleanolic acid +namespace: chebi_ontology +def: "A pentacyclic triterpenoid that is olean-12-en-28-oic acid substituted by a beta-hydroxy group at position 3." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3beta-Hydroxyolean-12-en-28-oic acid" RELATED [KEGG_COMPOUND] +synonym: "3beta-hydroxyolean-12-en-28-oic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "456.360" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "456.70030" RELATED MASS [ChEBI] +synonym: "[H][C@@]12CC(C)(C)CC[C@@]1(CC[C@]1(C)C2=CC[C@]2([H])[C@@]3(C)CC[C@H](O)C(C)(C)[C@]3([H])CC[C@@]12C)C(O)=O" RELATED SMILES [ChEBI] +synonym: "Astrantiagenin C" RELATED [ChemIDplus] +synonym: "Astrantiagenin C" RELATED [KEGG_COMPOUND] +synonym: "C30H48O3" RELATED FORMULA [ChEBI] +synonym: "Caryophyllin" RELATED [ChemIDplus] +synonym: "Caryophyllin" RELATED [KEGG_COMPOUND] +synonym: "Giganteumgenin C" RELATED [ChemIDplus] +synonym: "InChI=1S/C30H48O3/c1-25(2)14-16-30(24(32)33)17-15-28(6)19(20(30)18-25)8-9-22-27(5)12-11-23(31)26(3,4)21(27)10-13-29(22,28)7/h8,20-23,31H,9-18H2,1-7H3,(H,32,33)/t20-,21-,22+,23-,27-,28+,29+,30-/m0/s1" RELATED InChI [ChEBI] +synonym: "MIJYXULNPSFWEK-GTOFXWBISA-N" RELATED InChIKey [ChEBI] +synonym: "Oleanic acid" RELATED [ChemIDplus] +synonym: "Virgaureagenin B" RELATED [ChemIDplus] +xref: CAS:508-02-1 "ChemIDplus" +xref: KEGG:C17148 +xref: PMID:15541359 "Europe PMC" +xref: PMID:24393202 "Europe PMC" +xref: Wikipedia:Oleanolic_acid +is_a: CHEBI:25872 ! pentacyclic triterpenoid +is_a: CHEBI:35868 ! hydroxy monocarboxylic acid +relationship: has_parent_hydride CHEBI:36481 ! oleanane +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: is_conjugate_acid_of CHEBI:82828 ! oleanolate + +[Term] +id: CHEBI:37684 +name: mannose +namespace: chebi_ontology +alt_id: CHEBI:14575 +alt_id: CHEBI:33930 +def: "An aldohexose that is the C-2 epimer of glucose." [] +subset: 3_STAR +synonym: "C6H12O6" RELATED FORMULA [ChEBI] +synonym: "Man" RELATED [JCBN] +synonym: "manno-hexose" EXACT IUPAC_NAME [IUPAC] +synonym: "mannose" EXACT IUPAC_NAME [IUPAC] +synonym: "mannose" EXACT [UniProt] +xref: colombos:MANOSE +xref: PMID:16180318 "Europe PMC" +xref: PMID:24407290 "Europe PMC" +is_a: CHEBI:33917 ! aldohexose +relationship: has_role CHEBI:78675 ! fundamental metabolite + +[Term] +id: CHEBI:37690 +name: allose +namespace: chebi_ontology +alt_id: CHEBI:33927 +alt_id: CHEBI:33935 +def: "An aldohexose that is the C-3 epimer of glucose." [] +subset: 3_STAR +synonym: "All" RELATED [JCBN] +synonym: "allo-hexose" EXACT IUPAC_NAME [IUPAC] +synonym: "allose" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H12O6" RELATED FORMULA [ChEBI] +xref: PMID:24696548 "Europe PMC" +xref: Wikipedia:Allose +is_a: CHEBI:33917 ! aldohexose +relationship: has_role CHEBI:76924 ! plant metabolite + +[Term] +id: CHEBI:37699 +name: protein kinase inhibitor +namespace: chebi_ontology +def: "An EC 2.7.* (P-containing group transferase) inhibitor that interferes with the action of protein kinases." [] +subset: 3_STAR +synonym: "protein kinase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76668 ! EC 2.7.* (P-containing group transferase) inhibitor + +[Term] +id: CHEBI:37733 +name: EC 3.1.1.8 (cholinesterase) inhibitor +namespace: chebi_ontology +def: "An EC 3.1.1.* (carboxylic ester hydrolase) inhibitor that interferes with the action of cholinesterase (EC 3.1.1.8)." [] +subset: 3_STAR +synonym: "anticholineesterase inhibitor" RELATED [ChEBI] +synonym: "anticholineesterase inhibitors" RELATED [ChEBI] +synonym: "anticholinesterase" RELATED [ChEBI] +synonym: "anticholinesterases" RELATED [ChEBI] +synonym: "BChE inhibitor" RELATED [ChEBI] +synonym: "BChE inhibitors" RELATED [ChEBI] +synonym: "benzoylcholinesterase inhibitor" RELATED [ChEBI] +synonym: "benzoylcholinesterase inhibitors" RELATED [ChEBI] +synonym: "BtChoEase inhibitor" RELATED [ChEBI] +synonym: "BtChoEase inhibitors" RELATED [ChEBI] +synonym: "butyrylcholine esterase inhibitor" RELATED [ChEBI] +synonym: "butyrylcholine esterase inhibitors" RELATED [ChEBI] +synonym: "butyrylcholinesterase inhibitor" RELATED [ChEBI] +synonym: "butyrylcholinesterase inhibitors" RELATED [ChEBI] +synonym: "choline esterase II (unspecific) inhibitor" RELATED [ChEBI] +synonym: "choline esterase II (unspecific) inhibitors" RELATED [ChEBI] +synonym: "choline esterase inhibitor" RELATED [ChEBI] +synonym: "choline esterase inhibitors" RELATED [ChEBI] +synonym: "cholinesterase (EC 3.1.1.8) inhibitor" RELATED [ChEBI] +synonym: "cholinesterase (EC 3.1.1.8) inhibitors" RELATED [ChEBI] +synonym: "cholinesterase inhibitor" RELATED [ChEBI] +synonym: "EC 3.1.1.8 (cholinesterase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.1.8 inhibitor" RELATED [ChEBI] +synonym: "EC 3.1.1.8 inhibitors" RELATED [ChEBI] +synonym: "non-specific cholinesterase inhibitor" RELATED [ChEBI] +synonym: "non-specific cholinesterase inhibitors" RELATED [ChEBI] +synonym: "propionylcholinesterase inhibitor" RELATED [ChEBI] +synonym: "propionylcholinesterase inhibitors" RELATED [ChEBI] +synonym: "pseudocholinesterase inhibitor" RELATED [ChEBI] +synonym: "pseudocholinesterase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76773 ! EC 3.1.1.* (carboxylic ester hydrolase) inhibitor + +[Term] +id: CHEBI:37734 +name: phosphoric ester +namespace: chebi_ontology +alt_id: CHEBI:26019 +subset: 1_STAR +synonym: "phosphate esters" RELATED [ChEBI] +synonym: "phosphoric esters" RELATED [ChEBI] +is_a: CHEBI:26079 ! phosphoric acid derivative +is_a: CHEBI:35701 ! ester + +[Term] +id: CHEBI:37749 +name: halogen oxide +namespace: chebi_ontology +subset: 3_STAR +synonym: "halogen oxide" EXACT [ChEBI] +synonym: "halogen oxides" RELATED [ChEBI] +is_a: CHEBI:24471 ! halogen molecular entity +is_a: CHEBI:24836 ! inorganic oxide + +[Term] +id: CHEBI:37750 +name: chlorine oxide +namespace: chebi_ontology +subset: 3_STAR +synonym: "chlorine oxides" RELATED [ChEBI] +is_a: CHEBI:37749 ! halogen oxide + +[Term] +id: CHEBI:37806 +name: penicillanic acid +namespace: chebi_ontology +def: "A penam that consists of 3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane bearing a carboxy group at position 2 and having (2S,5R)-configuration." [] +subset: 3_STAR +synonym: "(2S,5R)-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2,2-dimethylpenam-3alpha-carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "201.046" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "201.24388" RELATED MASS [ChEBI] +synonym: "[H][C@@]12CC(=O)N1[C@@H](C(O)=O)C(C)(C)S2" RELATED SMILES [ChEBI] +synonym: "C8H11NO3S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C8H11NO3S/c1-8(2)6(7(11)12)9-4(10)3-5(9)13-8/h5-6H,3H2,1-2H3,(H,11,12)/t5-,6+/m1/s1" RELATED InChI [ChEBI] +synonym: "penicillanic acid" EXACT [ChemIDplus] +synonym: "RBKMMJSQKNKNEV-RITPCOANSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:4677775 "Beilstein" +xref: CAS:87-53-6 "ChemIDplus" +xref: Reaxys:4677775 "Reaxys" +is_a: CHEBI:25865 ! penicillanic acids + +[Term] +id: CHEBI:37808 +name: butane +namespace: chebi_ontology +alt_id: CHEBI:22945 +alt_id: CHEBI:25462 +alt_id: CHEBI:44430 +def: "A straight chain alkane composed of 4 carbon atoms." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "58.078" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "58.12220" RELATED MASS [ChEBI] +synonym: "butane" EXACT IUPAC_NAME [IUPAC] +synonym: "butane" EXACT [UniProt] +synonym: "C4H10" RELATED FORMULA [ChEBI] +synonym: "CCCC" RELATED SMILES [ChEBI] +synonym: "E 943a" RELATED [ChEBI] +synonym: "E-943a" RELATED [ChEBI] +synonym: "E943a" RELATED [ChEBI] +synonym: "IJDNQMDRQITEOD-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H10/c1-3-4-2/h3-4H2,1-2H3" RELATED InChI [ChEBI] +synonym: "n-Butan" RELATED [ChEBI] +synonym: "N-BUTANE" RELATED [PDBeChem] +synonym: "n-butane" RELATED [NIST_Chemistry_WebBook] +synonym: "n-C4H10" RELATED [NIST_Chemistry_WebBook] +synonym: "R-600" RELATED [ChEBI] +xref: Beilstein:969129 "Beilstein" +xref: CAS:106-97-8 "NIST Chemistry WebBook" +xref: Gmelin:1148 "Gmelin" +xref: PDBeChem:NBU +xref: PMID:24179026 "Europe PMC" +xref: Reaxys:969129 "Reaxys" +xref: Wikipedia:Butane +is_a: CHEBI:18310 ! alkane +relationship: has_role CHEBI:78017 ! food propellant +relationship: has_role CHEBI:78433 ! refrigerant + +[Term] +id: CHEBI:37826 +name: sulfuric acid derivative +namespace: chebi_ontology +subset: 3_STAR +synonym: "sulfuric acid derivative" EXACT [ChEBI] +synonym: "sulfuric acid derivatives" RELATED [ChEBI] +is_a: CHEBI:33424 ! sulfur oxoacid derivative +relationship: has_functional_parent CHEBI:26836 ! sulfuric acid + +[Term] +id: CHEBI:37827 +name: thiosulfuric acid derivative +namespace: chebi_ontology +subset: 3_STAR +synonym: "thiosulfuric acid derivatives" RELATED [ChEBI] +is_a: CHEBI:33424 ! sulfur oxoacid derivative + +[Term] +id: CHEBI:37838 +name: carboacyl group +namespace: chebi_ontology +def: "A carboacyl group is a group formed by loss of at least one OH from the carboxy group of a carboxylic acid." [] +subset: 3_STAR +synonym: "carboacyl groups" EXACT IUPAC_NAME [IUPAC] +synonym: "carboxylic acyl group" EXACT IUPAC_NAME [IUPAC] +synonym: "carboxylic acyl groups" RELATED [IUPAC] +is_a: CHEBI:22221 ! acyl group +relationship: is_substituent_group_from CHEBI:33575 ! carboxylic acid + +[Term] +id: CHEBI:37848 +name: plant hormone +namespace: chebi_ontology +alt_id: CHEBI:26158 +def: "A plant growth regulator that modulates the formation of stems, leaves and flowers, as well as the development and ripening of fruit. The term includes endogenous and non-endogenous compounds (e.g. active compounds produced by bacteria on the leaf surface) as well as semi-synthetic and fully synthetic compounds." [] +subset: 3_STAR +synonym: "phytohormone" RELATED [ChEBI] +synonym: "phytohormones" RELATED [ChEBI] +synonym: "plant growth factor" RELATED [ChEBI] +synonym: "plant growth factors" RELATED [ChEBI] +synonym: "plant growth hormone" RELATED [ChEBI] +synonym: "plant growth hormones" RELATED [ChEBI] +synonym: "plant hormones" RELATED [ChEBI] +xref: Wikipedia:Phytohormone +is_a: CHEBI:24621 ! hormone +is_a: CHEBI:26155 ! plant growth regulator + +[Term] +id: CHEBI:37912 +name: hydroxycoumarin +namespace: chebi_ontology +alt_id: CHEBI:24691 +alt_id: CHEBI:24692 +def: "Any coumarin carrying at least one hydroxy substituent." [] +subset: 3_STAR +synonym: "hydroxycoumarins" RELATED [ChEBI] +is_a: CHEBI:23403 ! coumarins + +[Term] +id: CHEBI:37929 +name: xanthene dye +namespace: chebi_ontology +def: "A dye derived by condensation of phthalic anhydride with resorcinol (and derivatives) or m-aminophenol (and derivatives)." [] +subset: 3_STAR +synonym: "xanthene dyes" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:38835 ! xanthenes +relationship: has_role CHEBI:37958 ! dye + +[Term] +id: CHEBI:37955 +name: H1-receptor antagonist +namespace: chebi_ontology +def: "H1-receptor antagonists are the drugs that selectively bind to but do not activate histamine H1 receptors, thereby blocking the actions of endogenous histamine." [] +subset: 3_STAR +synonym: "classical antihistamines" RELATED [ChEBI] +synonym: "classical antihistaminics" RELATED [ChEBI] +synonym: "H1 antihistaminics" RELATED [ChEBI] +synonym: "H1 receptor antagonists" RELATED [IUPHAR] +synonym: "H1 receptor blockaders" RELATED [ChEBI] +synonym: "H1-receptor antagonists" RELATED [ChEBI] +synonym: "H1-receptor blocker" RELATED [ChEBI] +synonym: "H1-receptor blockers" RELATED [ChEBI] +xref: PMID:22035879 "Europe PMC" +is_a: CHEBI:37956 ! histamine antagonist + +[Term] +id: CHEBI:37956 +name: histamine antagonist +namespace: chebi_ontology +def: "Histamine antagonists are the drugs that bind to but do not activate histamine receptors, thereby blocking the actions of histamine or histamine agonists." [] +subset: 3_STAR +synonym: "antihistamine" RELATED [ChEBI] +synonym: "antihistamines" RELATED [ChEBI] +synonym: "antihistaminico" RELATED [ChEBI] +synonym: "antihistaminics" RELATED [ChEBI] +synonym: "histamine receptor blocker" RELATED [ChEBI] +synonym: "histamine receptor blockers" RELATED [ChEBI] +xref: PMID:22035879 "Europe PMC" +xref: Wikipedia:Antihistamines +is_a: CHEBI:37957 ! histaminergic drug + +[Term] +id: CHEBI:37957 +name: histaminergic drug +namespace: chebi_ontology +def: "Drugs used for their actions on histaminergic systems." [] +subset: 3_STAR +synonym: "histamine agents" RELATED [ChEBI] +synonym: "histamine drugs" RELATED [ChEBI] +synonym: "histaminergic agent" RELATED [ChEBI] +synonym: "histaminergic agents" RELATED [ChEBI] +synonym: "histaminergic drugs" RELATED [ChEBI] +is_a: CHEBI:35942 ! neurotransmitter agent + +[Term] +id: CHEBI:37958 +name: dye +namespace: chebi_ontology +subset: 3_STAR +synonym: "colorante" RELATED [ChEBI] +synonym: "colorantes" RELATED [ChEBI] +synonym: "dyes" RELATED [ChEBI] +synonym: "Farbstoff" RELATED [ChEBI] +synonym: "Farbstoffe" RELATED [ChEBI] +synonym: "teinture" RELATED [ChEBI] +synonym: "teintures" RELATED [ChEBI] +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:38037 +name: methanesulfonate salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "mesylate salt" RELATED [ChEBI] +synonym: "mesylate salts" RELATED [ChEBI] +synonym: "methanesulfonate salts" RELATED [ChEBI] +is_a: CHEBI:48544 ! methanesulfonates +is_a: CHEBI:64382 ! organosulfonate salt + +[Term] +id: CHEBI:38070 +name: anti-arrhythmia drug +namespace: chebi_ontology +def: "A drug used for the treatment or prevention of cardiac arrhythmias. Anti-arrhythmia drugs may affect the polarisation-repolarisation phase of the action potential, its excitability or refractoriness, or impulse conduction or membrane responsiveness within cardiac fibres." [] +subset: 3_STAR +synonym: "antiarrhythmic agent" RELATED [ChEBI] +is_a: CHEBI:35554 ! cardiovascular drug + +[Term] +id: CHEBI:38093 +name: phenothiazines +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:26979 ! organic heterotricyclic compound + +[Term] +id: CHEBI:38101 +name: organonitrogen heterocyclic compound +namespace: chebi_ontology +def: "Any organonitrogen compound containing a cyclic component with nitrogen and at least one other element as ring member atoms." [] +subset: 3_STAR +synonym: "heterocyclic organonitrogen compounds" RELATED [ChEBI] +synonym: "organonitrogen heterocyclic compounds" RELATED [ChEBI] +is_a: CHEBI:24532 ! organic heterocyclic compound +is_a: CHEBI:35352 ! organonitrogen compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:38104 +name: oxacycle +namespace: chebi_ontology +def: "Any organic heterocyclic compound containing at least one ring oxygen atom." [] +subset: 3_STAR +synonym: "heterocyclic organooxygen compounds" RELATED [ChEBI] +synonym: "organooxygen heterocyclic compounds" RELATED [ChEBI] +synonym: "oxacycles" RELATED [ChEBI] +xref: PMID:17134300 "Europe PMC" +is_a: CHEBI:24532 ! organic heterocyclic compound +is_a: CHEBI:36963 ! organooxygen compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:38106 +name: organosulfur heterocyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "heterocyclic organosulfur compounds" RELATED [ChEBI] +synonym: "organosulfur heterocyclic compounds" RELATED [ChEBI] +is_a: CHEBI:24532 ! organic heterocyclic compound +is_a: CHEBI:33261 ! organosulfur compound + +[Term] +id: CHEBI:38131 +name: lactol +namespace: chebi_ontology +def: "Cyclic hemiacetals formed by intramolecular addition of a hydroxy group to an aldehydic or ketonic carbonyl group. They are thus 1-oxacycloalkan-2-ols or unsaturated analogues." [] +subset: 3_STAR +synonym: "lactol" EXACT [IUPAC] +synonym: "lactols" EXACT IUPAC_NAME [IUPAC] +synonym: "lactols" RELATED [ChEBI] +is_a: CHEBI:5653 ! hemiacetal + +[Term] +id: CHEBI:38157 +name: iron chelator +namespace: chebi_ontology +subset: 3_STAR +synonym: "iron chelating agents" RELATED [ChEBI] +synonym: "iron chelators" RELATED [ChEBI] +is_a: CHEBI:38161 ! chelator + +[Term] +id: CHEBI:38161 +name: chelator +namespace: chebi_ontology +alt_id: CHEBI:23090 +alt_id: CHEBI:3585 +alt_id: CHEBI:6789 +def: "A ligand with two or more separate binding sites that can bind to a single metallic central atom, forming a chelate." [] +subset: 3_STAR +synonym: "Chelating agent" RELATED [KEGG_COMPOUND] +synonym: "chelating agents" RELATED [ChEBI] +synonym: "chelators" RELATED [ChEBI] +synonym: "complexon" RELATED [ChEBI] +synonym: "Metal chelator" RELATED [KEGG_COMPOUND] +xref: KEGG:C00917 +xref: KEGG:C02169 +is_a: CHEBI:52214 ! ligand + +[Term] +id: CHEBI:38163 +name: organic heterotetracyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic heterotetracyclic compounds" RELATED [ChEBI] +is_a: CHEBI:38166 ! organic heteropolycyclic compound + +[Term] +id: CHEBI:38166 +name: organic heteropolycyclic compound +namespace: chebi_ontology +alt_id: CHEBI:25429 +alt_id: CHEBI:38075 +subset: 3_STAR +synonym: "organic heteropolycyclic compounds" RELATED [ChEBI] +is_a: CHEBI:24532 ! organic heterocyclic compound +is_a: CHEBI:33671 ! heteropolycyclic compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:38179 +name: monocyclic heteroarene +namespace: chebi_ontology +subset: 3_STAR +synonym: "monocyclic heteroarenes" RELATED [ChEBI] +is_a: CHEBI:33833 ! heteroarene + +[Term] +id: CHEBI:38180 +name: polycyclic heteroarene +namespace: chebi_ontology +subset: 3_STAR +synonym: "polycyclic heteroarenes" RELATED [ChEBI] +is_a: CHEBI:33833 ! heteroarene + +[Term] +id: CHEBI:38215 +name: calcium channel blocker +namespace: chebi_ontology +def: "One of a class of drugs that acts by selective inhibition of calcium influx through cell membranes or on the release and binding of calcium in intracellular pools." [] +subset: 3_STAR +synonym: "calcium channel antagonist" RELATED [ChEBI] +synonym: "calcium channel antagonists" RELATED [ChEBI] +synonym: "calcium channel blockers" RELATED [ChEBI] +is_a: CHEBI:38808 ! calcium channel modulator + +[Term] +id: CHEBI:38222 +name: hydrocarbyl anion +namespace: chebi_ontology +subset: 1_STAR +synonym: "hydrocarbyl anion" EXACT [ChEBI] +synonym: "hydrocarbyl anions" RELATED [ChEBI] +is_a: CHEBI:25696 ! organic anion + +[Term] +id: CHEBI:38260 +name: pyrrolidines +namespace: chebi_ontology +alt_id: CHEBI:26922 +alt_id: CHEBI:38191 +def: "Any of a class of heterocyclic amines having a saturated five-membered ring." [] +subset: 3_STAR +is_a: CHEBI:25693 ! organic heteromonocyclic compound +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + +[Term] +id: CHEBI:38261 +name: imidazolidines +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:38304 ! diazolidine + +[Term] +id: CHEBI:38263 +name: 2-amino-3-hydroxybutanoic acid +namespace: chebi_ontology +def: "An alpha-amino acid that is butanoic acid substituted by an amino group at position 2 and a hydroxy group at position 3." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "119.058" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "119.11920" RELATED MASS [ChEBI] +synonym: "2-amino-3-hydroxybutanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "AYFVYJQAPQTCCC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "C4H9NO3" RELATED FORMULA [ChEBI] +synonym: "CC(O)C(N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)" RELATED InChI [ChEBI] +xref: Beilstein:1098902 "Beilstein" +is_a: CHEBI:33704 ! alpha-amino acid +relationship: has_role CHEBI:76924 ! plant metabolite + +[Term] +id: CHEBI:38264 +name: 2-amino-3-methylpentanoic acid +namespace: chebi_ontology +def: "A branched chain amino acid that consists of 3-methylpentanoic acid bearing an amino substituent at position 2." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "131.095" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "131.17296" RELATED MASS [ChEBI] +synonym: "2-amino-3-methylpentanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "AGPKZVBTJJNPAG-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "C6H13NO2" RELATED FORMULA [ChEBI] +synonym: "CCC(C)C(N)C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C6H13NO2/c1-3-4(2)5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9)" RELATED InChI [ChEBI] +xref: CAS:443-79-8 "KEGG COMPOUND" +xref: KEGG:C16434 +xref: PMID:10944265 "Europe PMC" +xref: Reaxys:1721790 "Reaxys" +is_a: CHEBI:22918 ! branched-chain amino acid +is_a: CHEBI:33704 ! alpha-amino acid + +[Term] +id: CHEBI:38290 +name: L-ascorbate +namespace: chebi_ontology +alt_id: CHEBI:13082 +alt_id: CHEBI:13861 +def: "The L-enantiomer of ascorbate and conjugate base of L-ascorbic acid, arising from selective deprotonation of the 3-hydroxy group. Required for a range of essential metabolic reactions in all animals and plants." [] +subset: 3_STAR +synonym: "(2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate" EXACT IUPAC_NAME [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "175.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "175.11618" RELATED MASS [ChEBI] +synonym: "[H][C@@]1(OC(=O)C(O)=C1[O-])[C@@H](O)CO" RELATED SMILES [ChEBI] +synonym: "Ascorbate" RELATED [KEGG_COMPOUND] +synonym: "C6H7O6" RELATED FORMULA [ChEBI] +synonym: "CIWBSHSKHKDKBQ-JLAZNSOCSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C6H8O6/c7-1-2(8)5-3(9)4(10)6(11)12-5/h2,5,7-10H,1H2/p-1/t2-,5+/m0/s1" RELATED InChI [ChEBI] +synonym: "L-Ascorbate" EXACT [KEGG_COMPOUND] +synonym: "L-ascorbate" EXACT [UniProt] +synonym: "L-ascorbate(1-)" RELATED [ChEBI] +synonym: "L-ascorbic acid, ion(1-)" RELATED [ChemIDplus] +synonym: "Vitamin C" RELATED [KEGG_COMPOUND] +xref: Beilstein:3549814 "Beilstein" +xref: CAS:299-36-5 "ChemIDplus" +xref: Gmelin:506552 "Gmelin" +xref: KEGG:C00072 +xref: PMID:18450228 "Europe PMC" +xref: PMID:18678913 "Europe PMC" +xref: PMID:19162177 "Europe PMC" +xref: PMID:9506998 "Europe PMC" +is_a: CHEBI:22651 ! ascorbate +relationship: has_role CHEBI:27314 ! water-soluble vitamin +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: is_conjugate_base_of CHEBI:29073 ! L-ascorbic acid + +[Term] +id: CHEBI:38295 +name: azabicycloalkane +namespace: chebi_ontology +subset: 3_STAR +synonym: "azabicycloalkanes" RELATED [ChEBI] +is_a: CHEBI:27171 ! organic heterobicyclic compound +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + +[Term] +id: CHEBI:38297 +name: thiabicycloalkane +namespace: chebi_ontology +subset: 3_STAR +synonym: "thiabicycloalkanes" RELATED [ChEBI] +is_a: CHEBI:27171 ! organic heterobicyclic compound +is_a: CHEBI:38106 ! organosulfur heterocyclic compound + +[Term] +id: CHEBI:38303 +name: azirinopyrroloindole +namespace: chebi_ontology +subset: 3_STAR +synonym: "azirinopyrroloindoles" RELATED [ChEBI] +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound +is_a: CHEBI:38163 ! organic heterotetracyclic compound + +[Term] +id: CHEBI:38304 +name: diazolidine +namespace: chebi_ontology +subset: 3_STAR +synonym: "diazolidines" RELATED [ChEBI] +is_a: CHEBI:25693 ! organic heteromonocyclic compound +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + +[Term] +id: CHEBI:38311 +name: cephem +namespace: chebi_ontology +subset: 3_STAR +synonym: "cephems" RELATED [ChEBI] +is_a: CHEBI:27171 ! organic heterobicyclic compound +is_a: CHEBI:27933 ! beta-lactam antibiotic +is_a: CHEBI:38106 ! organosulfur heterocyclic compound + +[Term] +id: CHEBI:38313 +name: diazines +namespace: chebi_ontology +def: "Any organic heterocyclic compound containing a benzene ring in which two of the C-H fragments have been replaced by isolobal nitrogens (the diazine parent structure)." [] +subset: 3_STAR +is_a: CHEBI:25693 ! organic heteromonocyclic compound +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + +[Term] +id: CHEBI:38323 +name: cholinergic drug +namespace: chebi_ontology +def: "Any drug used for its actions on cholinergic systems. Included here are agonists and antagonists, drugs that affect the life cycle of acetylcholine, and drugs that affect the survival of cholinergic neurons." [] +subset: 3_STAR +synonym: "cholinergic agent" RELATED [ChEBI] +synonym: "cholinergic drugs" RELATED [ChEBI] +synonym: "cholinomimetic" RELATED [ChEBI] +is_a: CHEBI:35942 ! neurotransmitter agent + +[Term] +id: CHEBI:38337 +name: pyrimidone +namespace: chebi_ontology +def: "A pyrimidine carrying one or more oxo substituents." [] +subset: 3_STAR +synonym: "pyrimidones" RELATED [ChEBI] +is_a: CHEBI:39447 ! pyrimidines + +[Term] +id: CHEBI:38338 +name: aminopyrimidine +namespace: chebi_ontology +def: "A member of the class of pyrimidines that is pyrimidine substituted by at least one amino group and its derivatives." [] +subset: 3_STAR +synonym: "aminopyrimidines" RELATED [ChEBI] +is_a: CHEBI:33860 ! aromatic amine +is_a: CHEBI:39447 ! pyrimidines + +[Term] +id: CHEBI:38418 +name: 1,3-thiazole +namespace: chebi_ontology +alt_id: CHEBI:26949 +alt_id: CHEBI:38417 +subset: 3_STAR +synonym: "1,3-thiazoles" RELATED [ChEBI] +is_a: CHEBI:48901 ! thiazoles + +[Term] +id: CHEBI:38443 +name: 1-benzopyran +namespace: chebi_ontology +subset: 3_STAR +synonym: "1-benzopyrans" RELATED [ChEBI] +is_a: CHEBI:22727 ! benzopyran + +[Term] +id: CHEBI:38445 +name: chromenone +namespace: chebi_ontology +subset: 3_STAR +synonym: "chromenones" RELATED [ChEBI] +is_a: CHEBI:23232 ! chromenes + +[Term] +id: CHEBI:38462 +name: EC 3.1.1.7 (acetylcholinesterase) inhibitor +namespace: chebi_ontology +def: "An EC 3.1.1.* (carboxylic ester hydrolase) inhibitor that interferes with the action of enzyme acetylcholinesterase (EC 3.1.1.7), which helps breaking down of acetylcholine into choline and acetic acid." [] +subset: 3_STAR +synonym: "AcCholE inhibitor" RELATED [ChEBI] +synonym: "AcCholE inhibitors" RELATED [ChEBI] +synonym: "acetyl.beta-methylcholinesterase inhibitor" RELATED [ChEBI] +synonym: "acetyl.beta-methylcholinesterase inhibitors" RELATED [ChEBI] +synonym: "acetylcholine acetylhydrolase inhibitor" RELATED [ChEBI] +synonym: "acetylcholine acetylhydrolase inhibitors" RELATED [ChEBI] +synonym: "acetylcholine esterase inhibitor" RELATED [ChEBI] +synonym: "acetylcholine hydrolase inhibitor" RELATED [ChEBI] +synonym: "acetylcholine hydrolase inhibitors" RELATED [ChEBI] +synonym: "acetylcholinesterase (EC 3.1.1.7) inhibitor" RELATED [ChEBI] +synonym: "acetylcholinesterase (EC 3.1.1.7) inhibitors" RELATED [ChEBI] +synonym: "acetylcholinesterase inhibitor" RELATED [ChEBI] +synonym: "acetylcholinesterase inhibitors" RELATED [ChEBI] +synonym: "acetylthiocholinesterase inhibitor" RELATED [ChEBI] +synonym: "acetylthiocholinesterase inhibitors" RELATED [ChEBI] +synonym: "AChEI" RELATED [ChEBI] +synonym: "choline esterase I inhibitor" RELATED [ChEBI] +synonym: "choline esterase I inhibitors" RELATED [ChEBI] +synonym: "cholinesterase inhibitor" RELATED [ChEBI] +synonym: "cholinesterase inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.1.7 (acetylcholinesterase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.1.7 inhibitor" RELATED [ChEBI] +synonym: "EC 3.1.1.7 inhibitors" RELATED [ChEBI] +synonym: "true cholinesterase inhibitor" RELATED [ChEBI] +synonym: "true cholinesterase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Acetylcholinesterase_inhibitor +is_a: CHEBI:76773 ! EC 3.1.1.* (carboxylic ester hydrolase) inhibitor + +[Term] +id: CHEBI:38468 +name: indol-3-yl carboxylic acid anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "indol-3-yl carboxylic acid anions" RELATED [ChEBI] +is_a: CHEBI:35757 ! monocarboxylic acid anion + +[Term] +id: CHEBI:38496 +name: electron-transport chain inhibitor +namespace: chebi_ontology +subset: 1_STAR +synonym: "electron transport chain inhibitors" RELATED [ChEBI] +synonym: "ETC inhibitor" RELATED [ChEBI] +is_a: CHEBI:76932 ! pathway inhibitor + +[Term] +id: CHEBI:38497 +name: respiratory-chain inhibitor +namespace: chebi_ontology +subset: 1_STAR +synonym: "respiratory chain inhibitor" RELATED [ChEBI] +synonym: "respiratory electron-transport chain inhibitor" RELATED [ChEBI] +synonym: "respiratory-chain inhibitors" RELATED [ChEBI] +is_a: CHEBI:38496 ! electron-transport chain inhibitor + +[Term] +id: CHEBI:38500 +name: EC 1.9.3.1 (cytochrome c oxidase) inhibitor +namespace: chebi_ontology +alt_id: CHEBI:38501 +alt_id: CHEBI:62966 +def: "An EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor that interferes with the action of cytochrome c oxidase (EC 1.9.3.1)." [] +subset: 3_STAR +synonym: "CcO inhibitor" RELATED [ChEBI] +synonym: "complex IV (mitochondrial electron transport) inhibitor" RELATED [ChEBI] +synonym: "complex IV (mitochondrial electron transport) inhibitors" RELATED [ChEBI] +synonym: "cytochrome a3 inhibitor" RELATED [ChEBI] +synonym: "cytochrome a3 inhibitors" RELATED [ChEBI] +synonym: "cytochrome aa3 inhibitor" RELATED [ChEBI] +synonym: "cytochrome aa3 inhibitors" RELATED [ChEBI] +synonym: "cytochrome c oxidase (EC 1.9.3.1) inhibitor" RELATED [ChEBI] +synonym: "cytochrome c oxidase (EC 1.9.3.1) inhibitors" RELATED [ChEBI] +synonym: "cytochrome c oxidase inhibitor" RELATED [ChEBI] +synonym: "cytochrome c oxidase inhibitors" RELATED [ChEBI] +synonym: "cytochrome oxidase inhibitor" RELATED [ChEBI] +synonym: "cytochrome oxidase inhibitors" RELATED [ChEBI] +synonym: "cytochrome-c oxidase inhibitor" RELATED [ChEBI] +synonym: "cytochrome-c oxidase inhibitors" RELATED [ChEBI] +synonym: "EC 1.9.3.1 (cytochrome c oxidase) inhibitors" RELATED [ChEBI] +synonym: "EC 1.9.3.1 inhibitor" RELATED [ChEBI] +synonym: "EC 1.9.3.1 inhibitors" RELATED [ChEBI] +synonym: "ferrocytochrome c oxidase inhibitor" RELATED [ChEBI] +synonym: "ferrocytochrome c oxidase inhibitors" RELATED [ChEBI] +synonym: "ferrocytochrome-c:oxygen oxidoreductase inhibitor" RELATED [ChEBI] +synonym: "ferrocytochrome-c:oxygen oxidoreductase inhibitors" RELATED [ChEBI] +synonym: "indophenol oxidase inhibitor" RELATED [ChEBI] +synonym: "indophenol oxidase inhibitors" RELATED [ChEBI] +synonym: "indophenolase inhibitor" RELATED [ChEBI] +synonym: "indophenolase inhibitors" RELATED [ChEBI] +synonym: "mitochondrial complex IV inhibitor" RELATED [ChEBI] +synonym: "mitochondrial complex IV inhibitors" RELATED [ChEBI] +synonym: "mitochondrial cytochrome-c oxidase inhibitors" RELATED [ChEBI] +synonym: "NADH cytochrome c oxidase inhibitor" RELATED [ChEBI] +synonym: "NADH cytochrome c oxidase inhibitors" RELATED [ChEBI] +synonym: "Warburg's respiratory enzyme inhibitor" RELATED [ChEBI] +synonym: "Warburg's respiratory enzyme inhibitors" RELATED [ChEBI] +xref: PMID:12969439 "Europe PMC" +xref: Wikipedia:Cytochrome_c_oxidase +is_a: CHEBI:25355 ! mitochondrial respiratory-chain inhibitor +is_a: CHEBI:76870 ! EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor + +[Term] +id: CHEBI:38532 +name: hydrazone +namespace: chebi_ontology +def: "Compounds having the structure R2C=NNR2, formally derived from aldehydes or ketones by replacing =O by =NNH2 (or substituted analogues)." [] +subset: 3_STAR +synonym: "hydrazones" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrazones" RELATED [ChEBI] +is_a: CHEBI:35352 ! organonitrogen compound + +[Term] +id: CHEBI:38623 +name: EC 1.4.3.4 (monoamine oxidase) inhibitor +namespace: chebi_ontology +def: "An EC 1.4.3.* (oxidoreductase acting on donor CH-NH2 group, oxygen as acceptor) inhibitor that interferes with the action of monoamine oxidase (EC 1.4.3.4)." [] +subset: 3_STAR +synonym: "adrenalin oxidase inhibitor" RELATED [ChEBI] +synonym: "adrenalin oxidase inhibitors" RELATED [ChEBI] +synonym: "adrenaline oxidase inhibitor" RELATED [ChEBI] +synonym: "adrenaline oxidase inhibitors" RELATED [ChEBI] +synonym: "amine oxidase (flavin-containing) inhibitor" RELATED [ChEBI] +synonym: "amine oxidase (flavin-containing) inhibitors" RELATED [ChEBI] +synonym: "amine:oxygen oxidoreductase (deaminating) (flavin-containing) inhibitor" RELATED [ChEBI] +synonym: "amine:oxygen oxidoreductase (deaminating) (flavin-containing) inhibitors" RELATED [ChEBI] +synonym: "amine:oxygen oxidoreductase (deaminating) inhibitor" RELATED [ChEBI] +synonym: "amine:oxygen oxidoreductase (deaminating) inhibitors" RELATED [ChEBI] +synonym: "EC 1.4.3.4 (monoamine oxidase) inhibitors" RELATED [ChEBI] +synonym: "EC 1.4.3.4 inhibitor" RELATED [ChEBI] +synonym: "EC 1.4.3.4 inhibitors" RELATED [ChEBI] +synonym: "epinephrine oxidase inhibitor" RELATED [ChEBI] +synonym: "epinephrine oxidase inhibitors" RELATED [ChEBI] +synonym: "MAO A inhibitor" RELATED [ChEBI] +synonym: "MAO A inhibitors" RELATED [ChEBI] +synonym: "MAO B inhibitor" RELATED [ChEBI] +synonym: "MAO B inhibitors" RELATED [ChEBI] +synonym: "MAO inhibitor" RELATED [ChEBI] +synonym: "MAO inhibitors" RELATED [ChEBI] +synonym: "MAO-A inhibitor" RELATED [ChEBI] +synonym: "MAO-A inhibitors" RELATED [ChEBI] +synonym: "MAO-B inhibitor" RELATED [ChEBI] +synonym: "MAO-B inhibitors" RELATED [ChEBI] +synonym: "monoamine oxidase (EC 1.4.3.4) inhibitor" RELATED [ChEBI] +synonym: "monoamine oxidase (EC 1.4.3.4) inhibitors" RELATED [ChEBI] +synonym: "monoamine oxidase A inhibitor" RELATED [ChEBI] +synonym: "monoamine oxidase A inhibitors" RELATED [ChEBI] +synonym: "monoamine oxidase B inhibitor" RELATED [ChEBI] +synonym: "monoamine oxidase B inhibitors" RELATED [ChEBI] +synonym: "monoamine oxidase inhibitor" RELATED [ChEBI] +synonym: "monoamine oxidase inhibitors" RELATED [ChEBI] +synonym: "monoamine:O2 oxidoreductase (deaminating) inhibitor" RELATED [ChEBI] +synonym: "monoamine:O2 oxidoreductase (deaminating) inhibitors" RELATED [ChEBI] +synonym: "serotonin deaminase inhibitor" RELATED [ChEBI] +synonym: "serotonin deaminase inhibitors" RELATED [ChEBI] +synonym: "tyraminase inhibitor" RELATED [ChEBI] +synonym: "tyraminase inhibitors" RELATED [ChEBI] +synonym: "tyramine oxidase inhibitor" RELATED [ChEBI] +synonym: "tyramine oxidase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Monoamine_oxidase_inhibitor +is_a: CHEBI:76861 ! EC 1.4.3.* (oxidoreductase acting on donor CH-NH2 group, oxygen as acceptor) inhibitor + +[Term] +id: CHEBI:38627 +name: diazine +namespace: chebi_ontology +def: "The parent structure of the diazines." [] +subset: 3_STAR +synonym: "C4H4N2" RELATED FORMULA [ChEBI] +synonym: "Diazin" RELATED [ChEBI] +is_a: CHEBI:35555 ! mancude organic heteromonocyclic parent +is_a: CHEBI:38179 ! monocyclic heteroarene +is_a: CHEBI:38313 ! diazines +is_a: CHEBI:50893 ! azaarene + +[Term] +id: CHEBI:38631 +name: aminoalkylindole +namespace: chebi_ontology +alt_id: CHEBI:22503 +alt_id: CHEBI:24792 +subset: 3_STAR +synonym: "aminoalkylindoles" RELATED [ChEBI] +is_a: CHEBI:24828 ! indoles + +[Term] +id: CHEBI:38632 +name: membrane transport modulator +namespace: chebi_ontology +def: "Any agent that affects the transport of molecular entities across a biological membrane." [] +subset: 3_STAR +synonym: "membrane transport modulators" RELATED [ChEBI] +is_a: CHEBI:52208 ! biophysical role + +[Term] +id: CHEBI:38700 +name: organic sodium salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic sodium salt" EXACT [ChEBI] +synonym: "organic sodium salts" RELATED [ChEBI] +is_a: CHEBI:24868 ! organic salt +is_a: CHEBI:26714 ! sodium salt + +[Term] +id: CHEBI:38702 +name: inorganic sodium salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "inorganic sodium salts" RELATED [ChEBI] +is_a: CHEBI:24839 ! inorganic salt +is_a: CHEBI:26714 ! sodium salt + +[Term] +id: CHEBI:38716 +name: carboxylic acid dianion +namespace: chebi_ontology +def: "Any dianion containing at least one carboxy group." [] +subset: 3_STAR +synonym: "carboxylic acid dianion" EXACT [ChEBI] +synonym: "carboxylic acid dianions" RELATED [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion + +[Term] +id: CHEBI:38717 +name: carboxylic acid trianion +namespace: chebi_ontology +def: "A trianion containing at least one carboxy group." [] +subset: 3_STAR +synonym: "carboxylic acid trianion" EXACT [ChEBI] +synonym: "carboxylic acid trianions" RELATED [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion + +[Term] +id: CHEBI:38751 +name: triamine +namespace: chebi_ontology +def: "Any polyamine that contained three amino groups." [] +subset: 3_STAR +synonym: "triamines" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:88061 ! polyamine + +[Term] +id: CHEBI:38773 +name: quinolinemonocarboxylate +namespace: chebi_ontology +def: "A monocarboxylic acid anion that is the monoanion obtained by the deprotonation of the carboxy group attached to the quinoline skeleton" [] +subset: 3_STAR +synonym: "quinolinemonocarboxylates" RELATED [ChEBI] +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:26512 ! quinolinemonocarboxylic acid + +[Term] +id: CHEBI:38780 +name: N-nitro compound +namespace: chebi_ontology +def: "A compound having the nitro group (-NO2) attached to a nitrogen atom." [] +subset: 3_STAR +synonym: "N-nitro compounds" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:35715 ! nitro compound + +[Term] +id: CHEBI:38785 +name: morpholines +namespace: chebi_ontology +def: "Any compound containing morpholine as part of its structure." [] +subset: 3_STAR +is_a: CHEBI:46952 ! oxazinane + +[Term] +id: CHEBI:38808 +name: calcium channel modulator +namespace: chebi_ontology +def: "A membrane transport modulator that is able to regulate intracellular calcium levels." [] +subset: 3_STAR +synonym: "calcium channel modulators" RELATED [ChEBI] +is_a: CHEBI:38632 ! membrane transport modulator + +[Term] +id: CHEBI:38835 +name: xanthenes +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:39203 ! dibenzopyran + +[Term] +id: CHEBI:38867 +name: anaesthetic +namespace: chebi_ontology +def: "Substance which produces loss of feeling or sensation." [] +subset: 3_STAR +synonym: "anaesthetic" EXACT IUPAC_NAME [IUPAC] +synonym: "anaesthetics" RELATED [ChEBI] +synonym: "Anaesthetika" RELATED [ChEBI] +synonym: "Anaesthetikum" RELATED [ChEBI] +synonym: "anesthetic agent" RELATED [ChEBI] +synonym: "anesthetic drug" RELATED [ChEBI] +synonym: "anesthetics" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:38975 +name: methylbenzene +namespace: chebi_ontology +def: "Any alkylbenzene that is benzene substituted with one or more methyl groups." [] +subset: 3_STAR +synonym: "methylbenzenes" RELATED [ChEBI] +is_a: CHEBI:38976 ! alkylbenzene + +[Term] +id: CHEBI:38976 +name: alkylbenzene +namespace: chebi_ontology +def: "A monocyclic arene that is benzene substituted with one or more alkyl groups." [] +subset: 3_STAR +synonym: "alkylbenzene" EXACT [ChEBI] +synonym: "alkylbenzenes" RELATED [ChEBI] +synonym: "Alkylbenzol" RELATED [ChEBI] +is_a: CHEBI:22712 ! benzenes +is_a: CHEBI:33847 ! monocyclic arene +relationship: has_parent_hydride CHEBI:16716 ! benzene + +[Term] +id: CHEBI:39011 +name: Good's buffer substance +namespace: chebi_ontology +def: "Any member of a collection of zwitterionic buffer substances selected or devised for suitability in experimental biological systems according to a number of predetermined criteria. Named after Dr. Norman Good." [] +subset: 3_STAR +synonym: "Good buffer substance" RELATED [ChEBI] +synonym: "Good's buffer" RELATED [ChEBI] +synonym: "Good's buffers" RELATED [ChEBI] +xref: Wikipedia:Good's_buffers +is_a: CHEBI:35225 ! buffer + +[Term] +id: CHEBI:39074 +name: MOPS +namespace: chebi_ontology +def: "An oxygen molecular entity that acts as an excellent buffer for many biological systems at near-neutral pH." [] +subset: 3_STAR +is_a: CHEBI:25806 ! oxygen molecular entity +is_a: CHEBI:51143 ! nitrogen molecular entity +relationship: has_role CHEBI:39011 ! Good's buffer substance + +[Term] +id: CHEBI:39141 +name: Bronsted acid +namespace: chebi_ontology +def: "A molecular entity capable of donating a hydron to an acceptor (Bronsted base)." [] +subset: 3_STAR +synonym: "acide de Bronsted" RELATED [IUPAC] +synonym: "Bronsted acid" EXACT IUPAC_NAME [IUPAC] +synonym: "Bronsted-Saeure" RELATED [ChEBI] +synonym: "donneur d'hydron" RELATED [IUPAC] +synonym: "hydron donor" RELATED [IUPAC] +is_a: CHEBI:17891 ! donor +is_a: CHEBI:37527 ! acid + +[Term] +id: CHEBI:39142 +name: Bronsted base +namespace: chebi_ontology +def: "A molecular entity capable of accepting a hydron from a donor (Bronsted acid)." [] +subset: 3_STAR +synonym: "accepteur d'hydron" RELATED [IUPAC] +synonym: "base de Bronsted" RELATED [IUPAC] +synonym: "Bronsted base" EXACT IUPAC_NAME [IUPAC] +synonym: "Bronsted-Base" RELATED [ChEBI] +synonym: "hydron acceptor" RELATED [IUPAC] +is_a: CHEBI:15339 ! acceptor +is_a: CHEBI:22695 ! base + +[Term] +id: CHEBI:39143 +name: Lewis acid +namespace: chebi_ontology +def: "A molecular entity that is an electron-pair acceptor and therefore able to form a covalent bond with an electron-pair donor (Lewis base), thereby producing a Lewis adduct." [] +subset: 3_STAR +synonym: "accepteur d'une paire d'electrons" RELATED [IUPAC] +synonym: "acide de Lewis" RELATED [IUPAC] +synonym: "electron acceptor" RELATED [ChEBI] +synonym: "electron-pair acceptor" RELATED [IUPAC] +synonym: "Lewis acid" EXACT IUPAC_NAME [IUPAC] +synonym: "Lewis-Saeure" RELATED [ChEBI] +is_a: CHEBI:15339 ! acceptor +is_a: CHEBI:37527 ! acid + +[Term] +id: CHEBI:39144 +name: Lewis base +namespace: chebi_ontology +def: "A molecular entity able to provide a pair of electrons and thus capable of forming a covalent bond with an electron-pair acceptor (Lewis acid), thereby producing a Lewis adduct." [] +subset: 3_STAR +synonym: "base de Lewis" RELATED [IUPAC] +synonym: "donneur d'une paire d'electrons" RELATED [ChEBI] +synonym: "electron donor" RELATED [ChEBI] +synonym: "Lewis base" EXACT IUPAC_NAME [IUPAC] +synonym: "Lewis-Base" RELATED [ChEBI] +is_a: CHEBI:17891 ! donor +is_a: CHEBI:22695 ! base + +[Term] +id: CHEBI:39179 +name: nitroguanidine +namespace: chebi_ontology +def: "An N-nitro compound that is guanidine in which one of the hydrogens is replaced by a nitro group. It can exist in distinct tautomeric forms, as 1-nitroguanidine (a nitroimine) or 2-nitroguanidine (a nitroamine); in both solid and in solution, the nitroimine form predominates." [] +subset: 3_STAR +synonym: "CH4N4O2" RELATED FORMULA [ChEBI] +synonym: "nitroguanidine" EXACT IUPAC_NAME [IUPAC] +synonym: "picrite" RELATED [NIST_Chemistry_WebBook] +xref: CAS:556-88-7 "ChemIDplus" +xref: Wikipedia:Nitroguanidine +is_a: CHEBI:38780 ! N-nitro compound +relationship: has_functional_parent CHEBI:42820 ! guanidine +relationship: has_functional_parent CHEBI:616459 ! carbamimidoylazanium +relationship: has_role CHEBI:63490 ! explosive + +[Term] +id: CHEBI:39203 +name: dibenzopyran +namespace: chebi_ontology +def: "Any organic heteropolycyclic compound based on a skeleton consisting of a pyran ring fused with two benzene rings." [] +subset: 3_STAR +synonym: "dibenzopyrans" RELATED [ChEBI] +is_a: CHEBI:38104 ! oxacycle +is_a: CHEBI:38166 ! organic heteropolycyclic compound + +[Term] +id: CHEBI:39206 +name: dibenzopyridine +namespace: chebi_ontology +subset: 3_STAR +synonym: "dibenzopyridines" RELATED [ChEBI] +is_a: CHEBI:26979 ! organic heterotricyclic compound +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + +[Term] +id: CHEBI:39270 +name: naphthofuran +namespace: chebi_ontology +subset: 3_STAR +synonym: "naphthofurans" RELATED [ChEBI] +is_a: CHEBI:26979 ! organic heterotricyclic compound +is_a: CHEBI:38104 ! oxacycle + +[Term] +id: CHEBI:39317 +name: growth regulator +namespace: chebi_ontology +def: "Any chemical substance that inhibits the life-cycle of an organism." [] +subset: 3_STAR +synonym: "growth regulators" RELATED [ChEBI] +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:39352 +name: dinitrophenol +namespace: chebi_ontology +def: "Members of the class of nitrophenol carrying two nitro substituents." [] +subset: 3_STAR +synonym: "C6H4N2O5" RELATED FORMULA [ChEBI] +synonym: "dinitrophenol" EXACT IUPAC_NAME [IUPAC] +synonym: "dinitrophenols" RELATED [ChEBI] +xref: CAS:25550-58-7 "ChemIDplus" +is_a: CHEBI:25562 ! nitrophenol + +[Term] +id: CHEBI:39418 +name: straight-chain saturated fatty acid +namespace: chebi_ontology +def: "Any saturated fatty acid lacking a side-chain." [] +subset: 3_STAR +synonym: "straight-chain saturated fatty acid" EXACT [ChEBI] +synonym: "straight-chain saturated fatty acids" RELATED [ChEBI] +xref: PMID:15644336 "Europe PMC" +is_a: CHEBI:26607 ! saturated fatty acid +is_a: CHEBI:59202 ! straight-chain fatty acid +relationship: is_conjugate_acid_of CHEBI:58954 ! straight-chain saturated fatty acid anion + +[Term] +id: CHEBI:39446 +name: pyrimidine ribonucleosides +namespace: chebi_ontology +alt_id: CHEBI:13784 +alt_id: CHEBI:26445 +alt_id: CHEBI:7263 +subset: 3_STAR +is_a: CHEBI:18254 ! ribonucleoside +is_a: CHEBI:26440 ! pyrimidine nucleoside + +[Term] +id: CHEBI:39447 +name: pyrimidines +namespace: chebi_ontology +alt_id: CHEBI:13681 +alt_id: CHEBI:26448 +def: "Any compound having a pyrimidine as part of its structure." [] +subset: 3_STAR +is_a: CHEBI:38313 ! diazines + +[Term] +id: CHEBI:39457 +name: pyrimidine ribonucleoside 5'-monophosphate +namespace: chebi_ontology +alt_id: CHEBI:13682 +alt_id: CHEBI:37019 +alt_id: CHEBI:8677 +subset: 3_STAR +synonym: "Pyrimidine 5'-nucleotide" RELATED [KEGG_COMPOUND] +synonym: "pyrimidine 5'-nucleotide" RELATED [UniProt] +synonym: "pyrimidine ribonucleoside 5'-monophosphates" RELATED [ChEBI] +synonym: "pyrimidine ribonucleoside 5'-phosphate" RELATED [ChEBI] +xref: KEGG:C03536 +is_a: CHEBI:26443 ! pyrimidine ribonucleoside monophosphate +is_a: CHEBI:26446 ! pyrimidine ribonucleotide +is_a: CHEBI:37010 ! ribonucleoside 5'-monophosphate + +[Term] +id: CHEBI:39474 +name: polyazaalkane +namespace: chebi_ontology +def: "Any azaalkane in which two or more carbons in the chain are replaced by nitrogen." [] +subset: 3_STAR +synonym: "polyazaalkanes" RELATED [ChEBI] +is_a: CHEBI:46686 ! azaalkane +is_a: CHEBI:88061 ! polyamine + +[Term] +id: CHEBI:39745 +name: dihydrogenphosphate +namespace: chebi_ontology +alt_id: CHEBI:29137 +alt_id: CHEBI:39739 +def: "A monovalent inorganic anion that consists of phosphoric acid in which one of the three OH groups has been deprotonated." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "96.969" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "96.98724" RELATED MASS [ChEBI] +synonym: "[H]OP([O-])(=O)O[H]" RELATED SMILES [ChEBI] +synonym: "[PO2(OH)2](-)" RELATED [IUPAC] +synonym: "dihydrogen(tetraoxidophosphate)(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "dihydrogenphosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "DIHYDROGENPHOSPHATE ION" RELATED [PDBeChem] +synonym: "dihydrogentetraoxophosphate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "dihydrogentetraoxophosphate(V)" EXACT IUPAC_NAME [IUPAC] +synonym: "dihydroxidodioxidophosphate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "H2O4P" RELATED FORMULA [ChEBI] +synonym: "H2PO4(-)" RELATED [IUPAC] +synonym: "InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-1" RELATED InChI [ChEBI] +synonym: "NBIIXXVUZAFLBC-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: DrugBank:DB02831 +xref: Gmelin:1999 "Gmelin" +xref: PDBeChem:2HP +is_a: CHEBI:35780 ! phosphate ion +is_a: CHEBI:79389 ! monovalent inorganic anion +relationship: is_conjugate_acid_of CHEBI:43474 ! hydrogenphosphate + +[Term] +id: CHEBI:3992 +name: cyclic ketone +namespace: chebi_ontology +subset: 3_STAR +synonym: "Cyclic ketone" EXACT [KEGG_COMPOUND] +synonym: "cyclic ketones" EXACT IUPAC_NAME [IUPAC] +xref: KEGG:C02019 +is_a: CHEBI:17087 ! ketone + +[Term] +id: CHEBI:40646 +name: autoinducer-2 +namespace: chebi_ontology +def: "An organic anion that is a borate diester derived from a furanose and acts a universal signal molecule mediating intra- and interspecies communication among bacteria." [] +subset: 3_STAR +synonym: "(3aS,6S,6aR)-2,2,6,6a-tetrahydroxy-3a-methyltetrahydrofuro[3,2-d][1,3,2]dioxaborolan-2-uide" RELATED [ChEBI] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "192.94000" RELATED MASS [ChEBI] +synonym: "193.052" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "ACKRRKSNOOISSG-VPENINKCSA-N" RELATED InChIKey [ChEBI] +synonym: "AI-2" RELATED [KEGG_COMPOUND] +synonym: "Autoinducer 2" RELATED [KEGG_COMPOUND] +synonym: "C5H10BO7" RELATED FORMULA [ChEBI] +synonym: "C[C@]12OC[C@H](O)[C@@]1(O)O[B-](O)(O)O2" RELATED SMILES [ChEBI] +synonym: "dihydroxy[(2S,3R,4S)-2-methyldihydrofuran-2,3,3,4(2H)-tetrolato(2-)-kappa(2)O(2),O(3)]borate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C5H10BO7/c1-4-5(8,3(7)2-11-4)13-6(9,10)12-4/h3,7-10H,2H2,1H3/q-1/t3-,4+,5+/m0/s1" RELATED InChI [ChEBI] +xref: colombos:AUTO_INDUCER_2 +xref: KEGG:C16421 +xref: PDBeChem:AI2 +xref: PMID:23078586 "Europe PMC" +xref: PMID:23305926 "Europe PMC" +xref: PMID:23649272 "Europe PMC" +xref: PMID:24026770 "Europe PMC" +xref: PMID:24324385 "Europe PMC" +xref: PMID:24370626 "Europe PMC" +xref: PMID:24491837 "Europe PMC" +xref: PMID:24871429 "Europe PMC" +xref: PMID:25081571 "Europe PMC" +xref: PMID:25101248 "Europe PMC" +xref: Reaxys:23834806 "Reaxys" +is_a: CHEBI:25696 ! organic anion +relationship: has_role CHEBI:71338 ! autoinducer +relationship: has_role CHEBI:76969 ! bacterial metabolite + +[Term] +id: CHEBI:40721 +name: AMP(1+) +namespace: chebi_ontology +def: "An organic cation that is the conjugate acid of AMP obtained by selective protonation at position N1 on the purine moiety." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "348.071" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "348.22920" RELATED MASS [ChEBI] +synonym: "C10H15N5O7P" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/p+1/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "N1-PROTONATED ADENOSINE-5'-MONOPHOSPHATE" RELATED [PDBeChem] +synonym: "Nc1[nH+]cnc2n(cnc12)[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "UDMBCSSLTHHNCD-KQYNXXCUSA-O" RELATED InChIKey [ChEBI] +xref: PDBeChem:AP7 +is_a: CHEBI:25697 ! organic cation +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:16027 ! AMP + +[Term] +id: CHEBI:41139 +name: N,N,N-trimethylglycinium +namespace: chebi_ontology +alt_id: CHEBI:12531 +alt_id: CHEBI:41134 +def: "A quaternary ammonium ion in which the substituents on nitrogen are methyl (three) and carboxymethyl." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "118.087" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "118.154" RELATED MASS [ChEBI] +synonym: "[N+](C)(C)(C)CC(=O)O" RELATED SMILES [ChEBI] +synonym: "C5H12NO2" RELATED FORMULA [ChEBI] +synonym: "carboxy-N,N,N-trimethylmethanaminium" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/C5H11NO2/c1-6(2,3)4-5(7)8/h4H2,1-3H3/p+1" RELATED InChI [ChEBI] +synonym: "KWIUHFFTVRNATP-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "TRIMETHYL GLYCINE" RELATED [PDBeChem] +xref: Beilstein:1758492 "Beilstein" +xref: DrugBank:DB04455 +xref: ECMDB:ECMDB04024 +xref: Gmelin:324712 "Gmelin" +xref: PDBeChem:BET +xref: Reaxys:1758492 "Reaxys" +is_a: CHEBI:35267 ! quaternary ammonium ion +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:17750 ! glycine betaine + +[Term] +id: CHEBI:41402 +name: carboxymethyl group +namespace: chebi_ontology +alt_id: CHEBI:23029 +alt_id: CHEBI:41396 +subset: 3_STAR +synonym: "-CH2-COOH" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "59.013" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "59.04402" RELATED MASS [ChEBI] +synonym: "aspartic acid side-chain" RELATED [ChEBI] +synonym: "C2H3O2" RELATED FORMULA [ChEBI] +synonym: "carboxymethyl" EXACT IUPAC_NAME [IUPAC] +synonym: "CARBOXYMETHYL GROUP" EXACT [PDBeChem] +xref: PDBeChem:CBM +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group +relationship: is_substituent_group_from CHEBI:15366 ! acetic acid + +[Term] +id: CHEBI:41609 +name: carbonate +namespace: chebi_ontology +alt_id: CHEBI:29201 +alt_id: CHEBI:41605 +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "59.985" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "60.00890" RELATED MASS [ChEBI] +synonym: "[CO3](2-)" RELATED [IUPAC] +synonym: "[O-]C([O-])=O" RELATED SMILES [ChEBI] +synonym: "BVKZGUZCCUSVTD-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "carbonate" EXACT [IUPAC] +synonym: "CARBONATE ION" RELATED [PDBeChem] +synonym: "CO3" RELATED FORMULA [ChEBI] +synonym: "CO3(2-)" RELATED [ChEBI] +synonym: "InChI=1S/CH2O3/c2-1(3)4/h(H2,2,3,4)/p-2" RELATED InChI [ChEBI] +synonym: "Karbonat" RELATED [ChEBI] +synonym: "trioxidocarbonate(2-)" EXACT IUPAC_NAME [IUPAC] +xref: Beilstein:3600898 "Beilstein" +xref: CAS:3812-32-6 "ChemIDplus" +xref: Gmelin:1559 "Gmelin" +xref: PDBeChem:CO3 +is_a: CHEBI:35604 ! carbon oxoanion +relationship: is_conjugate_base_of CHEBI:17544 ! hydrogencarbonate + +[Term] +id: CHEBI:41808 +name: decane +namespace: chebi_ontology +alt_id: CHEBI:32894 +alt_id: CHEBI:41801 +def: "A straight-chain alkane with 10 carbon atoms." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "142.172" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "142.28168" RELATED MASS [ChEBI] +synonym: "C10H22" RELATED FORMULA [ChEBI] +synonym: "CCCCCCCCCC" RELATED SMILES [ChEBI] +synonym: "CH3-[CH2]8-CH3" RELATED [IUPAC] +synonym: "DECANE" EXACT [PDBeChem] +synonym: "decane" EXACT IUPAC_NAME [IUPAC] +synonym: "Dekan" RELATED [ChEBI] +synonym: "DIOQZVSQGTUSAI-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C10H22/c1-3-5-7-9-10-8-6-4-2/h3-10H2,1-2H3" RELATED InChI [ChEBI] +synonym: "n-decane" RELATED [NIST_Chemistry_WebBook] +synonym: "n-Dekan" RELATED [ChEBI] +xref: Beilstein:1696981 "ChemIDplus" +xref: CAS:124-18-5 "ChemIDplus" +xref: DrugBank:DB02826 +xref: Gmelin:67816 "Gmelin" +xref: HMDB:HMDB31450 +xref: LIPID_MAPS_instance:LMFA11000568 "LIPID MAPS" +xref: MetaCyc:CPD-9287 +xref: PDBeChem:D10 +xref: PMID:11762597 "Europe PMC" +xref: Reaxys:1696981 "Reaxys" +xref: Wikipedia:Decane +is_a: CHEBI:18310 ! alkane + +[Term] +id: CHEBI:4194 +name: D-hexose +namespace: chebi_ontology +def: "A hexose that has D-configuration at position 5." [] +subset: 3_STAR +synonym: "C6H12O6" RELATED FORMULA [ChEBI] +synonym: "D-hexopyranose" EXACT IUPAC_NAME [IUPAC] +synonym: "D-Hexose" EXACT [KEGG_COMPOUND] +synonym: "D-hexose" EXACT [UniProt] +synonym: "D-hexoses" RELATED [ChEBI] +xref: KEGG:C00738 +is_a: CHEBI:18133 ! hexose + +[Term] +id: CHEBI:4195 +name: D-hexose 6-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "D-Hexose 6-phosphate" EXACT [KEGG_COMPOUND] +xref: KEGG:C02965 +is_a: CHEBI:15965 ! D-hexose phosphate +is_a: CHEBI:47877 ! hexose 6-phosphate +relationship: has_functional_parent CHEBI:4194 ! D-hexose + +[Term] +id: CHEBI:42017 +name: 2,4-dinitrophenol +namespace: chebi_ontology +alt_id: CHEBI:42013 +alt_id: CHEBI:918 +def: "A dinitrophenol having the nitro groups at the 2- and 4-positions." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-hydroxy-2,4-dinitrobenzene" RELATED [ChemIDplus] +synonym: "184.012" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "184.10640" RELATED MASS [ChEBI] +synonym: "2,4-DINITROPHENOL" EXACT [PDBeChem] +synonym: "2,4-Dinitrophenol" EXACT [KEGG_COMPOUND] +synonym: "2,4-dinitrophenol" EXACT IUPAC_NAME [IUPAC] +synonym: "2,4-DNP" RELATED [NIST_Chemistry_WebBook] +synonym: "alpha-dinitrophenol" RELATED [NIST_Chemistry_WebBook] +synonym: "C6H4N2O5" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H4N2O5/c9-6-2-1-4(7(10)11)3-5(6)8(12)13/h1-3,9H" RELATED InChI [ChEBI] +synonym: "Oc1ccc(cc1[N+]([O-])=O)[N+]([O-])=O" RELATED SMILES [ChEBI] +synonym: "UFBJCMHMOXMLKC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1246142 "Beilstein" +xref: CAS:51-28-5 "KEGG COMPOUND" +xref: DrugBank:DB04528 +xref: Gmelin:103005 "Gmelin" +xref: KEGG:C02496 +xref: LINCS:LSM-20951 +xref: MetaCyc:CPD-8179 +xref: PDBeChem:DNF +xref: PMID:10509480 "Europe PMC" +xref: PMID:10888472 "Europe PMC" +xref: PMID:13532746 "Europe PMC" +xref: PMID:15307184 "Europe PMC" +xref: PMID:16661637 "Europe PMC" +xref: PMID:25281383 "Europe PMC" +xref: PMID:5959282 "Europe PMC" +xref: PMID:9129253 "Europe PMC" +xref: Reaxys:1246142 "Reaxys" +xref: Wikipedia:2\,4-Dinitrophenol +is_a: CHEBI:39352 ! dinitrophenol +relationship: has_role CHEBI:48218 ! antiseptic drug +relationship: has_role CHEBI:73267 ! oxidative phosphorylation inhibitor +relationship: has_role CHEBI:76976 ! bacterial xenobiotic metabolite +relationship: is_conjugate_acid_of CHEBI:84561 ! 2,4-dinitrophenol(1-) + +[Term] +id: CHEBI:42111 +name: (R)-lactic acid +namespace: chebi_ontology +alt_id: CHEBI:341 +alt_id: CHEBI:42105 +alt_id: CHEBI:43701 +def: "An optically active form of lactic acid having (R)-configuration." [] +subset: 3_STAR +synonym: "(-)-lactic acid" RELATED [ChemIDplus] +synonym: "(2R)-2-hydroxypropanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "(R)-(-)-lactic acid" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "90.032" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "90.07794" RELATED MASS [ChEBI] +synonym: "C3H6O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C[C@@H](O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "D-2-Hydroxypropanoic acid" RELATED [KEGG_COMPOUND] +synonym: "D-2-Hydroxypropionic acid" RELATED [KEGG_COMPOUND] +synonym: "D-Lactic acid" RELATED [KEGG_COMPOUND] +synonym: "D-lactic acid" RELATED [ChemIDplus] +synonym: "D-Milchsaeure" RELATED [ChEBI] +synonym: "InChI=1S/C3H6O3/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6)/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "JVTAAEKCZFNVCJ-UWTATZPHSA-N" RELATED InChIKey [ChEBI] +synonym: "LACTIC ACID" RELATED [PDBeChem] +xref: Beilstein:1720252 "Beilstein" +xref: CAS:10326-41-7 "ChemIDplus" +xref: DrugBank:DB03066 +xref: DrugBank:DB04398 +xref: Gmelin:362718 "Gmelin" +xref: HMDB:HMDB01311 +xref: KEGG:C00256 +xref: KNApSAcK:C00019549 +xref: PDBeChem:LAC +xref: PMID:21842515 "Europe PMC" +xref: PMID:22127808 "Europe PMC" +xref: PMID:22277286 "Europe PMC" +xref: PMID:22344644 "Europe PMC" +xref: Reaxys:1720252 "Reaxys" +xref: Wikipedia:Lactic_acid +is_a: CHEBI:78320 ! 2-hydroxypropanoic acid +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:16004 ! (R)-lactate +relationship: is_enantiomer_of CHEBI:422 ! (S)-lactic acid + +[Term] +id: CHEBI:422 +name: (S)-lactic acid +namespace: chebi_ontology +def: "An optically active form of lactic acid having (S)-configuration." [] +subset: 3_STAR +synonym: "(+)-lactic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "(2S)-2-hydroxypropanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "(S)-(+)-lactic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "(S)-2-hydroxypropanoic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "(S)-2-hydroxypropionic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "90.032" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "90.07794" RELATED MASS [ChEBI] +synonym: "C3H6O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C[C@H](O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H6O3/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6)/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "JVTAAEKCZFNVCJ-REOHCLBHSA-N" RELATED InChIKey [ChEBI] +synonym: "L-(+)-alpha-hydroxypropionic acid" RELATED [ChemIDplus] +synonym: "L-(+)-lactic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "L-Lactic acid" RELATED [KEGG_COMPOUND] +synonym: "L-Milchsaeure" RELATED [ChEBI] +xref: Beilstein:1720251 "Beilstein" +xref: CAS:79-33-4 "KEGG COMPOUND" +xref: Gmelin:362717 "Gmelin" +xref: HMDB:HMDB00190 +xref: KEGG:C00186 +xref: KNApSAcK:C00001191 +xref: PMID:21996028 "Europe PMC" +xref: PMID:22336740 "Europe PMC" +xref: PMID:22367529 "Europe PMC" +xref: PMID:22424924 "Europe PMC" +xref: PMID:22443585 "Europe PMC" +xref: PMID:22461545 "Europe PMC" +xref: PMID:22534372 "Europe PMC" +xref: PMID:22538963 "Europe PMC" +xref: PMID:22578598 "Europe PMC" +xref: Reaxys:1720251 "Reaxys" +xref: Wikipedia:Lactic_Acid +is_a: CHEBI:78320 ! 2-hydroxypropanoic acid +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:16651 ! (S)-lactate +relationship: is_enantiomer_of CHEBI:42111 ! (R)-lactic acid + +[Term] +id: CHEBI:42266 +name: ethane +namespace: chebi_ontology +alt_id: CHEBI:23975 +alt_id: CHEBI:42260 +def: "An alkane comprising of two carbon atoms." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "30.047" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "30.06904" RELATED MASS [ChEBI] +synonym: "Aethan" RELATED [ChEBI] +synonym: "bimethyl" RELATED [NIST_Chemistry_WebBook] +synonym: "C2H6" RELATED FORMULA [ChEBI] +synonym: "C2H6" RELATED [ChEBI] +synonym: "CC" RELATED SMILES [ChEBI] +synonym: "CH3-CH3" RELATED [IUPAC] +synonym: "dimethyl" RELATED [NIST_Chemistry_WebBook] +synonym: "Ethan" RELATED [ChEBI] +synonym: "ETHANE" EXACT [PDBeChem] +synonym: "ethane" EXACT IUPAC_NAME [IUPAC] +synonym: "ethyl hydride" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/C2H6/c1-2/h1-2H3" RELATED InChI [ChEBI] +synonym: "methylmethane" RELATED [NIST_Chemistry_WebBook] +synonym: "OTMSDBZUPAUEDD-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "R-170" RELATED [ChEBI] +xref: Beilstein:1730716 "Beilstein" +xref: CAS:74-84-0 "NIST Chemistry WebBook" +xref: Gmelin:212 "Gmelin" +xref: PDBeChem:EHN +xref: PMID:12826252 "Europe PMC" +xref: PMID:14664856 "Europe PMC" +xref: PMID:16236899 "Europe PMC" +xref: Reaxys:1730716 "Reaxys" +xref: Wikipedia:Ethane +is_a: CHEBI:18310 ! alkane +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:78433 ! refrigerant + +[Term] +id: CHEBI:42478 +name: ethidium +namespace: chebi_ontology +def: "The fluorescent compound widely used in experimental cell biology and biochemistry to reveal double-stranded DNA and RNA." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "3,8-diamino-5-ethyl-6-phenylphenanthridinium" EXACT IUPAC_NAME [IUPAC] +synonym: "314.166" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "314.40372" RELATED MASS [ChEBI] +synonym: "C21H20N3" RELATED FORMULA [ChEBI] +synonym: "CC[n+]1c(-c2ccccc2)c2cc(N)ccc2c2ccc(N)cc12" RELATED SMILES [ChEBI] +synonym: "ETHIDIUM" EXACT [PDBeChem] +synonym: "ethidium cation" RELATED [ChemIDplus] +synonym: "homidium" RELATED [ChemIDplus] +synonym: "InChI=1S/C21H19N3/c1-2-24-20-13-16(23)9-11-18(20)17-10-8-15(22)12-19(17)21(24)14-6-4-3-5-7-14/h3-13,23H,2,22H2,1H3/p+1" RELATED InChI [ChEBI] +synonym: "QTANTQQOYSUMLC-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +xref: Beilstein:3627183 "ChemIDplus" +xref: CAS:3546-21-2 "ChemIDplus" +xref: Gmelin:981639 "Gmelin" +xref: PDBeChem:ET +is_a: CHEBI:51245 ! phenanthridines +relationship: has_parent_hydride CHEBI:36421 ! phenanthridine +relationship: has_role CHEBI:24853 ! intercalator +relationship: has_role CHEBI:51217 ! fluorochrome + +[Term] +id: CHEBI:42485 +name: formyl group +namespace: chebi_ontology +alt_id: CHEBI:24089 +alt_id: CHEBI:42480 +subset: 3_STAR +synonym: "-CH(O)" RELATED [IUPAC] +synonym: "-CHO" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "29.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "29.01804" RELATED MASS [ChEBI] +synonym: "aldehyde group" EXACT IUPAC_NAME [IUPAC] +synonym: "carbaldehyde" EXACT IUPAC_NAME [IUPAC] +synonym: "CHO" RELATED FORMULA [ChEBI] +synonym: "Fo" RELATED [CBN] +synonym: "formyl" EXACT IUPAC_NAME [IUPAC] +synonym: "FORMYL GROUP" EXACT [PDBeChem] +synonym: "H-CO-" RELATED [IUPAC] +synonym: "methanoyl" RELATED [IUPAC] +xref: PDBeChem:FOR +is_a: CHEBI:27207 ! univalent carboacyl group +relationship: is_substituent_group_from CHEBI:30751 ! formic acid + +[Term] +id: CHEBI:42820 +name: guanidine +namespace: chebi_ontology +alt_id: CHEBI:24435 +alt_id: CHEBI:42816 +def: "An aminocarboxamidine, the parent compound of the guanidines." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "59.048" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "59.07062" RELATED MASS [ChEBI] +synonym: "aminomethanamidine" RELATED [NIST_Chemistry_WebBook] +synonym: "CH5N3" RELATED FORMULA [ChEBI] +synonym: "Gu" RELATED [ChEBI] +synonym: "guanidin" RELATED [ChEBI] +synonym: "GUANIDINE" EXACT [PDBeChem] +synonym: "guanidine" EXACT IUPAC_NAME [IUPAC] +synonym: "H2N-C(=NH)-NH2" RELATED [IUPAC] +synonym: "iminourea" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/CH5N3/c2-1(3)4/h(H5,2,3,4)" RELATED InChI [ChEBI] +synonym: "NC(N)=N" RELATED SMILES [ChEBI] +synonym: "ZRALSGWEFCBTJO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:506044 "Beilstein" +xref: CAS:113-00-8 "NIST Chemistry WebBook" +xref: Drug_Central:1344 "DrugCentral" +xref: DrugBank:DB00536 +xref: Gmelin:100679 "Gmelin" +xref: PDBeChem:GAI +xref: PMID:8070089 "Europe PMC" +xref: Reaxys:506044 "Reaxys" +xref: Wikipedia:Guanidine +is_a: CHEBI:24436 ! guanidines +is_a: CHEBI:35359 ! carboxamidine +is_a: CHEBI:64708 ! one-carbon compound +relationship: is_conjugate_base_of CHEBI:30087 ! guanidinium + +[Term] +id: CHEBI:43176 +name: hydroxy group +namespace: chebi_ontology +alt_id: CHEBI:24706 +alt_id: CHEBI:43171 +subset: 3_STAR +synonym: "-OH" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "17.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "17.00734" RELATED MASS [ChEBI] +synonym: "HO" RELATED FORMULA [ChEBI] +synonym: "hydroxy" EXACT IUPAC_NAME [IUPAC] +synonym: "HYDROXY GROUP" EXACT [PDBeChem] +synonym: "hydroxy group" EXACT [UniProt] +synonym: "hydroxyl" RELATED [ChEBI] +synonym: "hydroxyl group" RELATED [ChEBI] +synonym: "oxidanyl" EXACT IUPAC_NAME [IUPAC] +xref: PDBeChem:HYD +is_a: CHEBI:33246 ! inorganic group + +[Term] +id: CHEBI:43254 +name: (4S)-4-hydroxy-3,4-dihydropyrimidin-2(1H)-one +namespace: chebi_ontology +subset: 1_STAR +synonym: "(4S)-4-hydroxy-3,4-dihydropyrimidin-2(1H)-one" EXACT [PDBeChem] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "114.043" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "114.10272" RELATED MASS [ChEBI] +synonym: "4-HYDROXY-3,4-DIHYDRO-1H-PYRIMIDIN-2-ONE" RELATED [PDBeChem] +synonym: "[H]O[C@]1([H])N([H])C(=O)N([H])C([H])=C1[H]" RELATED SMILES [ChEBI] +synonym: "C4H6N2O2" RELATED FORMULA [ChEBI] +synonym: "DEAAWXYGBWCVJW-VKHMYHEASA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H6N2O2/c7-3-1-2-5-4(8)6-3/h1-3,7H,(H2,5,6,8)/t3-/m0/s1" RELATED InChI [ChEBI] +xref: PDBeChem:HPY +is_a: CHEBI:38337 ! pyrimidone +relationship: is_tautomer_of CHEBI:17568 ! uracil + +[Term] +id: CHEBI:43474 +name: hydrogenphosphate +namespace: chebi_ontology +alt_id: CHEBI:29139 +alt_id: CHEBI:43470 +def: "A phosphate ion that is the conjugate base of dihydrogenphosphate." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "95.961" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "95.97930" RELATED MASS [ChEBI] +synonym: "[P(OH)O3](2-)" RELATED [MolBase] +synonym: "[PO3(OH)](2-)" RELATED [IUPAC] +synonym: "HO4P" RELATED FORMULA [ChEBI] +synonym: "HPO4(2-)" RELATED [IUPAC] +synonym: "hydrogen phosphate" RELATED [ChEBI] +synonym: "hydrogen(tetraoxidophosphate)(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogenphosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "HYDROGENPHOSPHATE ION" RELATED [PDBeChem] +synonym: "hydrogentetraoxophosphate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogentetraoxophosphate(V)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydroxidotrioxidophosphate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-2" RELATED InChI [ChEBI] +synonym: "INORGANIC PHOSPHATE GROUP" RELATED [PDBeChem] +synonym: "NBIIXXVUZAFLBC-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "OP([O-])([O-])=O" RELATED SMILES [ChEBI] +synonym: "phosphate" RELATED [UniProt] +xref: Gmelin:1998 "Gmelin" +xref: MolBase:1628 +xref: PDBeChem:IPS +xref: PDBeChem:PI +is_a: CHEBI:35780 ! phosphate ion +is_a: CHEBI:79388 ! divalent inorganic anion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: is_conjugate_acid_of CHEBI:18367 ! phosphate(3-) +relationship: is_conjugate_base_of CHEBI:39745 ! dihydrogenphosphate + +[Term] +id: CHEBI:4356 +name: desferrioxamine B +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "560.353" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "560.68400" RELATED MASS [ChEBI] +synonym: "C25H48N6O8" RELATED FORMULA [ChEBI] +synonym: "CC(=O)N(O)CCCCCNC(=O)CCC(=O)N(O)CCCCCNC(=O)CCC(=O)N(O)CCCCCN" RELATED SMILES [ChEBI] +synonym: "Deferoxamin" RELATED [DrugBank] +synonym: "deferoxamina" RELATED INN [ChemIDplus] +synonym: "deferoxamine" RELATED INN [ChEBI] +synonym: "deferoxamine" RELATED INN [ChemIDplus] +synonym: "deferoxaminum" RELATED INN [ChEBI] +synonym: "Deferrioxamine" RELATED [DrugBank] +synonym: "deferrioxamine B" RELATED [ChemIDplus] +synonym: "Desferrioxamine" RELATED [DrugBank] +synonym: "DFO" RELATED [DrugBank] +synonym: "InChI=1S/C25H48N6O8/c1-21(32)29(37)18-9-3-6-16-27-22(33)12-14-25(36)31(39)20-10-4-7-17-28-23(34)11-13-24(35)30(38)19-8-2-5-15-26/h37-39H,2-20,26H2,1H3,(H,27,33)(H,28,34)" RELATED InChI [ChEBI] +synonym: "N'-{5-[acetyl(hydroxy)amino]pentyl}-N-(5-{4-[(5-aminopentyl)(hydroxy)amino]-4-oxobutanamido}pentyl)-N-hydroxybutanediamide" EXACT IUPAC_NAME [IUPAC] +synonym: "UBQYURCVBFRUQT-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:2514118 "Beilstein" +xref: CAS:70-51-9 "ChemIDplus" +xref: Drug_Central:792 "DrugCentral" +xref: DrugBank:DB00746 +xref: KEGG:C06940 +xref: KEGG:D03670 +xref: LINCS:LSM-6541 +xref: Patent:BE609053 +xref: Wikipedia:Deferoxamine +is_a: CHEBI:50454 ! acyclic desferrioxamine +relationship: has_role CHEBI:26672 ! siderophore +relationship: is_conjugate_acid_of CHEBI:84700 ! desferrioxamine B(3-) + +[Term] +id: CHEBI:43799 +name: butan-1-amine +namespace: chebi_ontology +def: "A primary aliphatic amine that is butane substituted by an amino group at position 1." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-Aminobutan" RELATED [ChemIDplus] +synonym: "1-aminobutane" RELATED [ChemIDplus] +synonym: "1-butanamine" RELATED [NIST_Chemistry_WebBook] +synonym: "1-butylamine" RELATED [NIST_Chemistry_WebBook] +synonym: "73.089" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "73.13680" RELATED MASS [ChEBI] +synonym: "butan-1-amine" EXACT IUPAC_NAME [IUPAC] +synonym: "butanamine" RELATED [NIST_Chemistry_WebBook] +synonym: "BUTYLAMINE" RELATED [PDBeChem] +synonym: "butylamine" RELATED [ChemIDplus] +synonym: "C4H11N" RELATED FORMULA [ChEBI] +synonym: "CCCCN" RELATED SMILES [ChEBI] +synonym: "HQABUPZFAYXKJW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H11N/c1-2-3-4-5/h2-5H2,1H3" RELATED InChI [ChEBI] +synonym: "mono-n-butylamine" RELATED [ChemIDplus] +synonym: "monobutylamine" RELATED [NIST_Chemistry_WebBook] +synonym: "n-Butylamin" RELATED [ChemIDplus] +synonym: "n-butylamine" RELATED [ChemIDplus] +synonym: "n-C4H9NH2" RELATED [NIST_Chemistry_WebBook] +xref: Beilstein:605269 "Beilstein" +xref: CAS:109-73-9 "NIST Chemistry WebBook" +xref: DrugBank:DB03659 +xref: Gmelin:1784 "Gmelin" +xref: MetaCyc:BUTYLAMINE +xref: PDBeChem:LYT +xref: PMID:16387436 "Europe PMC" +xref: PMID:23470444 "Europe PMC" +xref: PMID:23734590 "Europe PMC" +xref: Reaxys:605269 "Reaxys" +xref: Wikipedia:N-Butylamine +is_a: CHEBI:17062 ! primary aliphatic amine + +[Term] +id: CHEBI:4431 +name: deoxyribonucleotide +namespace: chebi_ontology +def: "A nucleotide in which the ribose moiety has one or more of its hydroxy groups substituted by hydrogen." [] +subset: 3_STAR +synonym: "deoxyribonucleotides" RELATED [ChEBI] +is_a: CHEBI:23634 ! deoxyaldopentose phosphate +is_a: CHEBI:36976 ! nucleotide + +[Term] +id: CHEBI:44423 +name: hydroxyurea +namespace: chebi_ontology +alt_id: CHEBI:44420 +alt_id: CHEBI:5816 +def: "A member of the class of ureas that is urea in which one of the hydrogens is replaced by a hydroxy group. An antineoplastic used in the treatment of chronic myeloid leukaemia as well as for sickle-cell disease." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "76.027" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "76.05474" RELATED MASS [ChEBI] +synonym: "carbamohydroxamic acid" RELATED [ChemIDplus] +synonym: "carbamohydroximic acid" RELATED [ChemIDplus] +synonym: "carbamoyl oxime" RELATED [ChemIDplus] +synonym: "carbamyl hydroxamate" RELATED [ChemIDplus] +synonym: "CH4N2O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "hidroxicarbamida" RELATED INN [ChemIDplus] +synonym: "hydrea" RELATED [ChemIDplus] +synonym: "Hydroxycarbamid" RELATED [ChEBI] +synonym: "Hydroxycarbamide" RELATED [KEGG_COMPOUND] +synonym: "hydroxycarbamide" RELATED INN [WHO_MedNet] +synonym: "hydroxycarbamide" RELATED INN [ChemIDplus] +synonym: "hydroxycarbamidum" RELATED INN [ChemIDplus] +synonym: "Hydroxyharnstoff" RELATED [ChEBI] +synonym: "Hydroxyurea" EXACT [KEGG_COMPOUND] +synonym: "hydroxyurea" EXACT [UniProt] +synonym: "InChI=1S/CH4N2O2/c2-1(4)3-5/h5H,(H3,2,3,4)" RELATED InChI [ChEBI] +synonym: "N-carbamoylhydroxylamine" RELATED [ChemIDplus] +synonym: "N-HYDROXYUREA" RELATED [PDBeChem] +synonym: "N-hydroxyurea" EXACT IUPAC_NAME [IUPAC] +synonym: "NC(=O)NO" RELATED SMILES [ChEBI] +synonym: "oxyurea" RELATED [ChemIDplus] +synonym: "VSNHCAURESNICA-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1741548 "ChemIDplus" +xref: CAS:127-07-1 "KEGG COMPOUND" +xref: Drug_Central:1399 "DrugCentral" +xref: DrugBank:DB01005 +xref: Gmelin:130423 "Gmelin" +xref: HMDB:HMDB15140 +xref: KEGG:C07044 +xref: KEGG:D00341 +xref: MetaCyc:HYDROXY-UREA +xref: Patent:US2705727 +xref: PDBeChem:NHY +xref: PMID:11285159 "Europe PMC" +xref: PMID:11298103 "Europe PMC" +xref: PMID:11364534 "Europe PMC" +xref: PMID:11365149 "Europe PMC" +xref: PMID:11391710 "Europe PMC" +xref: PMID:12107454 "Europe PMC" +xref: PMID:14988684 "Europe PMC" +xref: PMID:15772364 "Europe PMC" +xref: PMID:15994344 "Europe PMC" +xref: PMID:16356682 "Europe PMC" +xref: PMID:22983419 "Europe PMC" +xref: PMID:23318979 "Europe PMC" +xref: PMID:23643402 "Europe PMC" +xref: PMID:23696560 "Europe PMC" +xref: PMID:9271088 "Europe PMC" +xref: Reaxys:1741548 "Reaxys" +xref: Wikipedia:Hydroxyurea +is_a: CHEBI:47857 ! ureas +is_a: CHEBI:64708 ! one-carbon compound +relationship: has_role CHEBI:35221 ! antimetabolite +relationship: has_role CHEBI:35610 ! antineoplastic agent +relationship: has_role CHEBI:48578 ! radical scavenger +relationship: has_role CHEBI:50846 ! immunomodulator +relationship: has_role CHEBI:50902 ! genotoxin +relationship: has_role CHEBI:50905 ! teratogenic agent +relationship: has_role CHEBI:59517 ! DNA synthesis inhibitor +relationship: has_role CHEBI:64911 ! antimitotic +relationship: has_role CHEBI:74213 ! EC 1.17.4.1 (ribonucleoside-diphosphate reductase) inhibitor + +[Term] +id: CHEBI:44485 +name: N-ethylmaleimide +namespace: chebi_ontology +alt_id: CHEBI:44483 +alt_id: CHEBI:7269 +def: "A member of the class of maleimides that is the N-ethyl derivative of maleimide." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-ethyl-1H-pyrrole-2,5-dione" EXACT IUPAC_NAME [IUPAC] +synonym: "125.048" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "125.048" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "125.12530" RELATED MASS [ChEBI] +synonym: "C6H7NO2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C6H7NO2" RELATED FORMULA [ChEBI] +synonym: "CCN1C(=O)C=CC1=O" RELATED SMILES [ChEBI] +synonym: "Ethylmaleimide" RELATED [ChemIDplus] +synonym: "HDFGOPSGAURCEO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C6H7NO2/c1-2-7-5(8)3-4-6(7)9/h3-4H,2H2,1H3" RELATED InChI [ChEBI] +synonym: "N-ETHYLMALEIMIDE" EXACT [PDBeChem] +synonym: "N-Ethylmaleimide" EXACT [KEGG_COMPOUND] +synonym: "N-ethylmaleimide" EXACT [UniProt] +synonym: "NEM" RELATED [NIST_Chemistry_WebBook] +xref: Beilstein:112448 "Beilstein" +xref: CAS:128-53-0 "NIST Chemistry WebBook" +xref: DrugBank:DB02967 +xref: Gmelin:405614 "Gmelin" +xref: KEGG:C02441 +xref: LINCS:LSM-4219 +xref: MetaCyc:N-ETHYLMALEIMIDE +xref: PDBeChem:NEQ +xref: PMID:12232209 "Europe PMC" +xref: PMID:18499511 "Europe PMC" +xref: PMID:24211707 "Europe PMC" +xref: PMID:6501266 "Europe PMC" +xref: Reaxys:112448 "Reaxys" +xref: Wikipedia:N-Ethylmaleimide +is_a: CHEBI:55417 ! maleimides +relationship: has_functional_parent CHEBI:16072 ! maleimide +relationship: has_role CHEBI:77115 ! EC 2.1.1.122 [(S)-tetrahydroprotoberberine N-methyltransferase] inhibitor +relationship: has_role CHEBI:78366 ! EC 2.7.1.1 (hexokinase) inhibitor +relationship: has_role CHEBI:78377 ! EC 1.3.1.8 [acyl-CoA dehydrogenase (NADP(+))] inhibitor + +[Term] +id: CHEBI:44976 +name: phosphonic acid +namespace: chebi_ontology +alt_id: CHEBI:26067 +def: "A phosphorus oxoacid that consists of a single pentavalent phosphorus covalently bound via single bonds to a single hydrogen and two hydroxy groups and via a double bond to an oxygen. The parent of the class of phosphonic acids." [] +subset: 3_STAR +synonym: "(HO)2HPO" RELATED [NIST_Chemistry_WebBook] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "81.982" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "81.982" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "81.99580" RELATED MASS [ChEBI] +synonym: "[PHO(OH)2]" RELATED [IUPAC] +synonym: "ABLZXFCXXLZCGV-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "dihydrogen hydridotrioxophosphate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "H2PHO3" RELATED [IUPAC] +synonym: "H3O3P" RELATED FORMULA [KEGG_COMPOUND] +synonym: "H3O3P" RELATED FORMULA [ChEBI] +synonym: "H3PO3" RELATED [ChEBI] +synonym: "HPO(OH)2" RELATED [IUPAC] +synonym: "hydridodihydroxidooxidophosphorus" EXACT IUPAC_NAME [IUPAC] +synonym: "hydridotrioxophosphoric(2-) acid" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H3O3P/c1-4(2)3/h4H,(H2,1,2,3)" RELATED InChI [ChEBI] +synonym: "OP(O)=O" RELATED SMILES [ChEBI] +synonym: "Phosphite" RELATED [KEGG_COMPOUND] +synonym: "Phosphonate" RELATED [KEGG_COMPOUND] +synonym: "Phosphonic acid" EXACT [KEGG_COMPOUND] +synonym: "phosphonic acid" EXACT [ChEBI] +synonym: "Phosphonsaeure" RELATED [ChEBI] +xref: CAS:13598-36-2 "KEGG COMPOUND" +xref: Gmelin:1619 "Gmelin" +xref: KEGG:C06701 +xref: PDBeChem:PHS +xref: Reaxys:1209272 "Reaxys" +xref: Wikipedia:Phosphonic_acid +is_a: CHEBI:26069 ! phosphonic acids +is_a: CHEBI:33457 ! phosphorus oxoacid +relationship: has_role CHEBI:24127 ! fungicide +relationship: is_conjugate_acid_of CHEBI:33462 ! phosphonate(1-) +relationship: is_tautomer_of CHEBI:36361 ! phosphorous acid + +[Term] +id: CHEBI:45064 +name: phosphite(3-) +namespace: chebi_ontology +alt_id: CHEBI:29197 +alt_id: CHEBI:45060 +def: "A trivalent inorganic anion obtained by removal of all three protons from phosphorous acid." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "78.959" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "78.97196" RELATED MASS [ChEBI] +synonym: "[O-]P([O-])[O-]" RELATED SMILES [ChEBI] +synonym: "[PO3](3-)" RELATED [IUPAC] +synonym: "AQSJGOWTSHOLKH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/O3P/c1-4(2)3/q-3" RELATED InChI [ChEBI] +synonym: "O3P" RELATED FORMULA [ChEBI] +synonym: "Phosphit" RELATED [ChEBI] +synonym: "phosphite" RELATED [IUPAC] +synonym: "PHOSPHITE ION" RELATED [PDBeChem] +synonym: "PO3(3-)" RELATED [IUPAC] +synonym: "trioxidophosphate(3-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxophosphate(3-)" EXACT IUPAC_NAME [IUPAC] +synonym: "trioxophosphate(III)" EXACT IUPAC_NAME [IUPAC] +xref: Gmelin:68617 "Gmelin" +xref: PDBeChem:PO3 +is_a: CHEBI:26045 ! phosphite ion +is_a: CHEBI:79387 ! trivalent inorganic anion +relationship: is_conjugate_base_of CHEBI:29259 ! hydrogenphosphite + +[Term] +id: CHEBI:45373 +name: sulfanilamide +namespace: chebi_ontology +alt_id: CHEBI:45370 +alt_id: CHEBI:9333 +def: "A sulfonamide in which the sulfamoyl functional group is attached to aniline at the 4-position." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "172.031" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "172.20600" RELATED MASS [ChEBI] +synonym: "4-aminobenzene sulfonic acid amide" RELATED [ChEBI] +synonym: "4-aminobenzenesulfonamide" EXACT IUPAC_NAME [IUPAC] +synonym: "4-azanylbenzenesulfonamide" RELATED [IUPAC] +synonym: "C6H8N2O2S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "FDDDEECHVMSUSB-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C6H8N2O2S/c7-5-1-3-6(4-2-5)11(8,9)10/h1-4H,7H2,(H2,8,9,10)" RELATED InChI [ChEBI] +synonym: "Nc1ccc(cc1)S(N)(=O)=O" RELATED SMILES [ChEBI] +synonym: "p-aminobenzenesulfamide" RELATED [NIST_Chemistry_WebBook] +synonym: "p-aminobenzenesulfonamide" RELATED [NIST_Chemistry_WebBook] +synonym: "para-aminobenzenesulfonamide" RELATED [ChEBI] +synonym: "Prontosil album" RELATED [KEGG_COMPOUND] +synonym: "SA" RELATED [ChEBI] +synonym: "Streptocide" RELATED [NIST_Chemistry_WebBook] +synonym: "Sulfamine" RELATED [KEGG_COMPOUND] +synonym: "sulfamine" RELATED [NIST_Chemistry_WebBook] +synonym: "SULFANILAMIDE" EXACT [PDBeChem] +synonym: "Sulfanilamide" EXACT [KEGG_COMPOUND] +synonym: "sulphanilamide" RELATED [ChEBI] +xref: Beilstein:511852 "Beilstein" +xref: CAS:63-74-1 "NIST Chemistry WebBook" +xref: Drug_Central:2521 "DrugCentral" +xref: DrugBank:DB00259 +xref: Gmelin:83068 "Gmelin" +xref: HMDB:HMDB14404 +xref: KEGG:C07458 +xref: KEGG:D08543 +xref: LINCS:LSM-6524 +xref: PDBeChem:SAN +xref: PMID:22214209 "Europe PMC" +xref: PMID:22342371 "Europe PMC" +xref: PMID:22974493 "Europe PMC" +xref: PMID:23061287 "Europe PMC" +xref: PMID:23065453 "Europe PMC" +xref: PMID:23122138 "Europe PMC" +xref: PMID:23294218 "Europe PMC" +xref: PMID:23476893 "Europe PMC" +xref: PMID:23561569 "Europe PMC" +xref: PMID:2420897 "Europe PMC" +xref: PMID:9639594 "Europe PMC" +xref: Reaxys:511852 "Reaxys" +xref: Wikipedia:Sulfanilamide +is_a: CHEBI:48975 ! substituted aniline +is_a: CHEBI:87228 ! sulfonamide antibiotic +relationship: has_role CHEBI:23018 ! EC 4.2.1.1 (carbonic anhydrase) inhibitor +relationship: has_role CHEBI:33282 ! antibacterial agent + +[Term] +id: CHEBI:45441 +name: N-acetyl-L-serine +namespace: chebi_ontology +alt_id: CHEBI:21561 +alt_id: CHEBI:45438 +alt_id: CHEBI:88006 +def: "An N-acetyl-L-amino acid in which the amino acid specified is L-serine. Metabolite observed in cancer metabolism." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "147.053" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "147.129" RELATED MASS [ChEBI] +synonym: "C([C@H](CO)NC(C)=O)(=O)O" RELATED SMILES [ChEBI] +synonym: "C5H9NO4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C5H9NO4/c1-3(8)6-4(2-7)5(9)10/h4,7H,2H2,1H3,(H,6,8)(H,9,10)/t4-/m0/s1" RELATED InChI [ChEBI] +synonym: "JJIHLJJYMXLCOY-BYPYZUCNSA-N" RELATED InChIKey [ChEBI] +synonym: "N-acetylserine" EXACT IUPAC_NAME [IUPAC] +xref: CAS:16354-58-8 "ChemIDplus" +xref: Chemspider:312807 +xref: HMDB:HMDB02931 +xref: PDBeChem:SAC +xref: PMID:25518943 "Europe PMC" +xref: Reaxys:1724424 "Reaxys" +is_a: CHEBI:21545 ! N-acetyl-L-amino acid +is_a: CHEBI:22194 ! acetyl-L-serine +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:45506 +name: alpha-D-ribose +namespace: chebi_ontology +alt_id: CHEBI:22410 +alt_id: CHEBI:45501 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.053" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "150.12990" RELATED MASS [ChEBI] +synonym: "alpha-D-Rib" RELATED [JCBN] +synonym: "alpha-D-ribofuranose" EXACT IUPAC_NAME [IUPAC] +synonym: "C5H10O5" RELATED FORMULA [ChEBI] +synonym: "HMFHBZSHGGEWLO-AIHAYLRMSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5+/m1/s1" RELATED InChI [ChEBI] +synonym: "OC[C@H]1O[C@H](O)[C@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "RIBOSE" RELATED [PDBeChem] +xref: Beilstein:1722195 "Beilstein" +xref: Beilstein:3587846 "Beilstein" +xref: Beilstein:6052585 "Beilstein" +xref: Gmelin:2027190 "Gmelin" +xref: PDBeChem:RIB +is_a: CHEBI:47013 ! D-ribofuranose +relationship: is_enantiomer_of CHEBI:47004 ! alpha-L-ribose + +[Term] +id: CHEBI:45557 +name: sec-butyl group +namespace: chebi_ontology +alt_id: CHEBI:30352 +alt_id: CHEBI:45554 +subset: 3_STAR +synonym: "-CH(CH3)-CH2-CH3" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-methylpropyl" EXACT IUPAC_NAME [IUPAC] +synonym: "57.070" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "57.11426" RELATED MASS [ChEBI] +synonym: "but-2-yl" RELATED [ChEBI] +synonym: "butan-2-ido" EXACT IUPAC_NAME [IUPAC] +synonym: "butan-2-yl" EXACT IUPAC_NAME [IUPAC] +synonym: "C4H9" RELATED FORMULA [ChEBI] +synonym: "CH3-CH2-CH(CH3)-" RELATED [IUPAC] +synonym: "isoleucine side-chain" RELATED [ChEBI] +synonym: "s-butyl" RELATED [ChEBI] +synonym: "sec-butyl" EXACT IUPAC_NAME [IUPAC] +synonym: "SEC-BUTYL GROUP" EXACT [PDBeChem] +xref: PDBeChem:SBU +is_a: CHEBI:22323 ! alkyl group +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group +relationship: is_substituent_group_from CHEBI:37808 ! butane + +[Term] +id: CHEBI:456215 +name: AMP(2-) +namespace: chebi_ontology +def: "A nucleoside 5'-monophosphate(2-) that results from the removal of two protons from the phosphate group of AMP." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "345.047" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "345.20530" RELATED MASS [ChEBI] +synonym: "5'-O-phosphonatoadenosine" EXACT IUPAC_NAME [IUPAC] +synonym: "Adenosine-5-monophosphate dianion" RELATED [ChEBI] +synonym: "Adenosine-5-monophosphate(2-)" RELATED [ChEBI] +synonym: "AMP" RELATED [UniProt] +synonym: "AMP dianion" RELATED [ChEBI] +synonym: "C10H12N5O7P" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/p-2/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "UDMBCSSLTHHNCD-KQYNXXCUSA-L" RELATED InChIKey [ChEBI] +xref: HMDB:HMDB00045 +xref: MetaCyc:AMP +xref: Reaxys:3598274 "Reaxys" +is_a: CHEBI:58043 ! nucleoside 5'-monophosphate(2-) +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:16027 ! AMP + +[Term] +id: CHEBI:456216 +name: ADP(3-) +namespace: chebi_ontology +def: "A nucleoside 5'-diphosphate(3-) arising from deprotonation of all three diphosphate OH groups of adenosine 5'-diphosphate (ADP); major species present at pH 7.3." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "424.006" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "424.17730" RELATED MASS [ChEBI] +synonym: "5'-O-[(phosphonatooxy)phosphinato]adenosine" RELATED [ChEBI] +synonym: "adenosine 5'-diphosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "ADP" RELATED [UniProt] +synonym: "ADP trianion" RELATED [ChEBI] +synonym: "C10H12N5O10P2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/p-3/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "XTWYTFMLZFPYCI-KQYNXXCUSA-K" RELATED InChIKey [ChEBI] +xref: Beilstein:3783669 "Beilstein" +xref: Gmelin:341336 "Gmelin" +is_a: CHEBI:57930 ! nucleoside 5'-diphosphate(3-) +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:16761 ! ADP +relationship: is_conjugate_base_of CHEBI:87518 ! ADP(2-) + +[Term] +id: CHEBI:45696 +name: hydrogensulfate +namespace: chebi_ontology +alt_id: CHEBI:29199 +alt_id: CHEBI:45693 +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "96.960" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "97.07154" RELATED MASS [ChEBI] +synonym: "[H]OS([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "[SO3(OH)](-)" RELATED [IUPAC] +synonym: "HO4S" RELATED FORMULA [ChEBI] +synonym: "HSO4(-)" RELATED [IUPAC] +synonym: "HYDROGEN SULFATE" RELATED [PDBeChem] +synonym: "hydrogen(tetraoxidosulfate)(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogensulfate" EXACT [IUPAC] +synonym: "hydrogensulfate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogentetraoxosulfate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogentetraoxosulfate(VI)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydroxidotrioxidosulfate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-1" RELATED InChI [ChEBI] +synonym: "QAOWNCQODCNURD-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Gmelin:2121 "Gmelin" +xref: PDBeChem:SOH +is_a: CHEBI:33482 ! sulfur oxoanion +relationship: is_conjugate_acid_of CHEBI:16189 ! sulfate +relationship: is_conjugate_base_of CHEBI:26836 ! sulfuric acid + +[Term] +id: CHEBI:46398 +name: UTP(4-) +namespace: chebi_ontology +alt_id: CHEBI:37567 +alt_id: CHEBI:46397 +def: "A nucleoside triphosphate(4-) obtained by global deprotonation of the triphosphate OH groups of UTP; major species present at pH 7.3." [] +subset: 3_STAR +synonym: "-4" RELATED CHARGE [ChEBI] +synonym: "479.937" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "480.10940" RELATED MASS [ChEBI] +synonym: "C9H11N2O15P3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C9H15N2O15P3/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H,10,12,15)(H2,16,17,18)/p-4/t4-,6-,7-,8-/m1/s1" RELATED InChI [ChEBI] +synonym: "O[C@@H]1[C@@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)O[C@H]([C@@H]1O)n1ccc(=O)[nH]c1=O" RELATED SMILES [ChEBI] +synonym: "PGAVKCOVUIYSFO-XVFCMESISA-J" RELATED InChIKey [ChEBI] +synonym: "URIDINE 5'-TRIPHOSPHATE" RELATED [PDBeChem] +synonym: "uridine 5'-triphosphate(4-)" EXACT IUPAC_NAME [IUPAC] +synonym: "UTP" RELATED [UniProt] +synonym: "utp" RELATED [ChEBI] +xref: Beilstein:5204708 "Beilstein" +xref: Gmelin:336589 "Gmelin" +xref: PDBeChem:UTP +is_a: CHEBI:61557 ! nucleoside triphosphate(4-) +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:15713 ! UTP + +[Term] +id: CHEBI:46502 +name: tungstate +namespace: chebi_ontology +alt_id: CHEBI:30518 +alt_id: CHEBI:46497 +def: "A divalent inorganic anion obtained by removal of both protons from tungstic acid." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "247.83760" RELATED MASS [ChEBI] +synonym: "247.931" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[O-][W]([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "[WO4](2-)" RELATED [MolBase] +synonym: "InChI=1S/4O.W/q;;2*-1;" RELATED InChI [ChEBI] +synonym: "O4W" RELATED FORMULA [ChEBI] +synonym: "PBYZMCDFOULPGH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "tetraoxidotungstate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "tetraoxidotungstate(VI)" EXACT IUPAC_NAME [IUPAC] +synonym: "tungstate" EXACT [UniProt] +synonym: "TUNGSTATE(VI)ION" RELATED [PDBeChem] +synonym: "Wolframat" RELATED [ChEBI] +synonym: "wolframate" RELATED [ChEBI] +xref: CAS:14311-52-5 "ChemIDplus" +xref: Gmelin:2540 "Gmelin" +xref: MolBase:529 +xref: PDBeChem:WO4 +is_a: CHEBI:36270 ! tungsten oxoanion +is_a: CHEBI:79388 ! divalent inorganic anion +relationship: is_conjugate_base_of CHEBI:36271 ! hydrogentungstate + +[Term] +id: CHEBI:46629 +name: oxo group +namespace: chebi_ontology +alt_id: CHEBI:29353 +alt_id: CHEBI:44607 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "15.995" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "15.99940" RELATED MASS [ChEBI] +synonym: "=O" RELATED [IUPAC] +synonym: "O" RELATED FORMULA [ChEBI] +synonym: "oxo" EXACT IUPAC_NAME [IUPAC] +synonym: "OXO GROUP" EXACT [PDBeChem] +xref: PDBeChem:OXO +is_a: CHEBI:33246 ! inorganic group + +[Term] +id: CHEBI:46645 +name: isobutanol +namespace: chebi_ontology +def: "An alkyl alcohol that is propan-1-ol substituted by a methyl group at position 2." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-Hydroxymethylpropane" RELATED [KEGG_COMPOUND] +synonym: "1-hydroxymethylpropane" RELATED [ChemIDplus] +synonym: "2-Methyl-1-propanol" RELATED [KEGG_COMPOUND] +synonym: "2-methyl-1-propanol" RELATED [NIST_Chemistry_WebBook] +synonym: "2-methylpropan-1-ol" EXACT IUPAC_NAME [IUPAC] +synonym: "2-methylpropanol" RELATED [NIST_Chemistry_WebBook] +synonym: "74.073" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "74.12160" RELATED MASS [ChEBI] +synonym: "C4H10O" RELATED FORMULA [ChEBI] +synonym: "CC(C)CO" RELATED SMILES [ChEBI] +synonym: "i-Butanol" RELATED [NIST_Chemistry_WebBook] +synonym: "i-Butyl alcohol" RELATED [NIST_Chemistry_WebBook] +synonym: "IBA" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/C4H10O/c1-4(2)3-5/h4-5H,3H2,1-2H3" RELATED InChI [ChEBI] +synonym: "iso-butyl alcohol" RELATED [ChemIDplus] +synonym: "iso-C4H9OH" RELATED [NIST_Chemistry_WebBook] +synonym: "isobutanol" EXACT [ChemIDplus] +synonym: "isobutyl alcohol" RELATED [ChemIDplus] +synonym: "Isobutylalkohol" RELATED [NIST_Chemistry_WebBook] +synonym: "isopropylcarbinol" RELATED [NIST_Chemistry_WebBook] +synonym: "ZXEKIIBDNHEJCQ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1730878 "ChemIDplus" +xref: CAS:78-83-1 "NIST Chemistry WebBook" +xref: colombos:ISOBUTANOL +xref: Gmelin:49282 "Gmelin" +xref: HMDB:HMDB06006 +xref: KEGG:C14710 +xref: PMID:24305546 "Europe PMC" +xref: PMID:24430208 "Europe PMC" +xref: Reaxys:1730878 "Reaxys" +xref: Wikipedia:Isobutanol +xref: YMDB:YMDB00573 +is_a: CHEBI:15734 ! primary alcohol +is_a: CHEBI:50584 ! alkyl alcohol +relationship: has_parent_hydride CHEBI:30363 ! isobutane +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite + +[Term] +id: CHEBI:46648 +name: nitrite salt +namespace: chebi_ontology +subset: 1_STAR +synonym: "nitrite salts" RELATED [ChEBI] +is_a: CHEBI:25549 ! nitrites +relationship: has_part CHEBI:16301 ! nitrite + +[Term] +id: CHEBI:46686 +name: azaalkane +namespace: chebi_ontology +subset: 3_STAR +synonym: "azaalkanes" RELATED [ChEBI] +is_a: CHEBI:50047 ! organic amino compound + +[Term] +id: CHEBI:46687 +name: diazaalkane +namespace: chebi_ontology +subset: 3_STAR +synonym: "diazaalkanes" RELATED [ChEBI] +is_a: CHEBI:39474 ! polyazaalkane + +[Term] +id: CHEBI:46774 +name: polyether +namespace: chebi_ontology +def: "Any ether that contains more than one ether linkage." [] +subset: 3_STAR +synonym: "polyether" EXACT [ChEBI] +synonym: "polyethers" RELATED [ChEBI] +is_a: CHEBI:25698 ! ether + +[Term] +id: CHEBI:46786 +name: diether +namespace: chebi_ontology +def: "A polyether in which the number of ether linkages is 2." [] +subset: 3_STAR +synonym: "diether" EXACT [ChEBI] +synonym: "diethers" RELATED [ChEBI] +is_a: CHEBI:46774 ! polyether + +[Term] +id: CHEBI:46787 +name: solvent +namespace: chebi_ontology +def: "A liquid that can dissolve other substances (solutes) without any change in their chemical composition." [] +subset: 3_STAR +synonym: "Loesungsmittel" RELATED [ChEBI] +synonym: "solvant" RELATED [ChEBI] +synonym: "solvents" RELATED [ChEBI] +xref: Wikipedia:Solvent +is_a: CHEBI:33232 ! application +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:46845 +name: N-alkylpiperazine +namespace: chebi_ontology +subset: 3_STAR +synonym: "N-alkylpiperazines" RELATED [ChEBI] +is_a: CHEBI:26144 ! piperazines +is_a: CHEBI:50996 ! tertiary amino compound + +[Term] +id: CHEBI:46847 +name: N-iminopiperazine +namespace: chebi_ontology +subset: 3_STAR +synonym: "N-iminopiperazines" RELATED [ChEBI] +is_a: CHEBI:26144 ! piperazines + +[Term] +id: CHEBI:46848 +name: N-arylpiperazine +namespace: chebi_ontology +subset: 3_STAR +synonym: "N-arylpiperazines" RELATED [ChEBI] +is_a: CHEBI:26144 ! piperazines +is_a: CHEBI:33860 ! aromatic amine +is_a: CHEBI:50996 ! tertiary amino compound + +[Term] +id: CHEBI:46850 +name: organoammonium salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "organoammonium salts" RELATED [ChEBI] +is_a: CHEBI:35276 ! ammonium compound + +[Term] +id: CHEBI:46867 +name: indolyl carboxylic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "indolyl carboxylic acids" RELATED [ChEBI] +is_a: CHEBI:24828 ! indoles +is_a: CHEBI:33575 ! carboxylic acid + +[Term] +id: CHEBI:46883 +name: carboxy group +namespace: chebi_ontology +alt_id: CHEBI:23025 +alt_id: CHEBI:41420 +subset: 3_STAR +synonym: "-C(O)OH" RELATED [IUPAC] +synonym: "-CO2H" RELATED [ChEBI] +synonym: "-COOH" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "44.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "45.01744" RELATED MASS [ChEBI] +synonym: "carboxy" EXACT IUPAC_NAME [IUPAC] +synonym: "CARBOXY GROUP" EXACT [PDBeChem] +synonym: "carboxyl group" RELATED [ChEBI] +synonym: "CHO2" RELATED FORMULA [ChEBI] +xref: PDBeChem:CBX +is_a: CHEBI:33249 ! organyl group + +[Term] +id: CHEBI:46895 +name: lipopeptide +namespace: chebi_ontology +def: "A compound consisting of a peptide with attached lipid." [] +subset: 3_STAR +synonym: "lipopeptides" RELATED [ChEBI] +synonym: "LP" RELATED [ChEBI] +xref: PMID:19889045 "Europe PMC" +xref: PMID:20545290 "Europe PMC" +xref: PMID:23131643 "Europe PMC" +xref: PMID:23318669 "Europe PMC" +xref: Wikipedia:Lipopeptide +is_a: CHEBI:16670 ! peptide +is_a: CHEBI:18059 ! lipid + +[Term] +id: CHEBI:46920 +name: N-methylpiperazine +namespace: chebi_ontology +subset: 3_STAR +synonym: "N-methylpiperazines" RELATED [ChEBI] +is_a: CHEBI:46845 ! N-alkylpiperazine + +[Term] +id: CHEBI:46952 +name: oxazinane +namespace: chebi_ontology +subset: 3_STAR +synonym: "oxazinanes" RELATED [ChEBI] +is_a: CHEBI:25693 ! organic heteromonocyclic compound +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound +is_a: CHEBI:38104 ! oxacycle + +[Term] +id: CHEBI:46997 +name: L-ribose +namespace: chebi_ontology +def: "A ribose in which the chiral carbon atom furthest away from the aldehyde group (C4') has the same configuration as in L-glyceraldehyde." [] +subset: 3_STAR +synonym: "C5H10O5" RELATED FORMULA [ChEBI] +synonym: "L-Rib" RELATED [JCBN] +synonym: "L-ribo-pentose" EXACT IUPAC_NAME [IUPAC] +synonym: "L-ribose" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33942 ! ribose +relationship: is_enantiomer_of CHEBI:16988 ! D-ribose + +[Term] +id: CHEBI:46998 +name: ribofuranose +namespace: chebi_ontology +def: "A cyclic ribose having a 5-membered tetrahydrofuran ring; the predominant (C3'-endo) form of the two cyclic structures (the other is the \"C2'-endo\" form, having a 6-membered ring) adopted by ribose in aqueous solution." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.12990" RELATED MASS [ChEBI] +synonym: "C5H10O5" RELATED FORMULA [ChEBI] +synonym: "rel-(3R,4S,5R)-5-(hydroxymethyl)tetrahydrofuran-2,3,4-triol" RELATED [IUPAC] +synonym: "ribofuranose" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:33942 ! ribose +relationship: has_role CHEBI:84735 ! algal metabolite + +[Term] +id: CHEBI:47000 +name: L-ribofuranose +namespace: chebi_ontology +def: "An ribofuranose having L-configuration." [] +subset: 3_STAR +synonym: "(3S,4R,5S)-5-(hydroxymethyl)tetrahydrofuran-2,3,4-triol" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.053" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "150.12990" RELATED MASS [ChEBI] +synonym: "C5H10O5" RELATED FORMULA [ChEBI] +synonym: "HMFHBZSHGGEWLO-OWMBCFKOSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5?/m0/s1" RELATED InChI [ChEBI] +synonym: "L-ribofuranose" EXACT IUPAC_NAME [IUPAC] +synonym: "OC[C@@H]1OC(O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +xref: Beilstein:1904879 "Beilstein" +is_a: CHEBI:46997 ! L-ribose +is_a: CHEBI:46998 ! ribofuranose + +[Term] +id: CHEBI:47004 +name: alpha-L-ribose +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.053" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "150.12990" RELATED MASS [ChEBI] +synonym: "alpha-L-Rib" RELATED [JCBN] +synonym: "alpha-L-ribofuranose" EXACT IUPAC_NAME [IUPAC] +synonym: "C5H10O5" RELATED FORMULA [ChEBI] +synonym: "HMFHBZSHGGEWLO-NEEWWZBLSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5+/m0/s1" RELATED InChI [ChEBI] +synonym: "OC[C@@H]1O[C@@H](O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +xref: Beilstein:8977514 "Beilstein" +is_a: CHEBI:47000 ! L-ribofuranose +relationship: is_enantiomer_of CHEBI:45506 ! alpha-D-ribose + +[Term] +id: CHEBI:47013 +name: D-ribofuranose +namespace: chebi_ontology +alt_id: CHEBI:4233 +alt_id: CHEBI:46999 +def: "A ribofuranose having D-configuration." [] +subset: 3_STAR +synonym: "(3R,4S,5R)-5-(hydroxymethyl)tetrahydrofuran-2,3,4-triol" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.053" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "150.12990" RELATED MASS [ChEBI] +synonym: "C5H10O5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "D-ribofuranose" EXACT IUPAC_NAME [IUPAC] +synonym: "D-Ribose" RELATED [KEGG_COMPOUND] +synonym: "D-ribose" RELATED [UniProt] +synonym: "HMFHBZSHGGEWLO-SOOFDHNKSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5?/m1/s1" RELATED InChI [ChEBI] +synonym: "OC[C@H]1OC(O)[C@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "ribose" RELATED [ChemIDplus] +xref: Beilstein:1904878 "Beilstein" +xref: CAS:50-69-1 "KEGG COMPOUND" +xref: Gmelin:364108 "Gmelin" +xref: KEGG:C00121 +xref: Patent:US2152662 +xref: PMID:9506998 "Europe PMC" +xref: Reaxys:1904878 "Reaxys" +is_a: CHEBI:16988 ! D-ribose +is_a: CHEBI:46998 ! ribofuranose + +[Term] +id: CHEBI:47016 +name: tetrahydrofuranone +namespace: chebi_ontology +def: "Any oxolane having an oxo- substituent at any position on the tetrahydrofuran ring." [] +subset: 3_STAR +synonym: "tetrahydrofuranones" RELATED [ChEBI] +xref: PMID:6047194 "Europe PMC" +is_a: CHEBI:26912 ! oxolanes + +[Term] +id: CHEBI:47017 +name: tetrahydrofuranol +namespace: chebi_ontology +subset: 3_STAR +synonym: "tetrahydrofuranols" RELATED [ChEBI] +is_a: CHEBI:26912 ! oxolanes + +[Term] +id: CHEBI:47018 +name: monohydroxytetrahydrofuran +namespace: chebi_ontology +subset: 3_STAR +synonym: "monohydroxytetrahydrofurans" RELATED [ChEBI] +is_a: CHEBI:47017 ! tetrahydrofuranol + +[Term] +id: CHEBI:47019 +name: dihydroxytetrahydrofuran +namespace: chebi_ontology +subset: 3_STAR +synonym: "dihydroxytetrahydrofurans" RELATED [ChEBI] +is_a: CHEBI:47017 ! tetrahydrofuranol + +[Term] +id: CHEBI:47037 +name: cyclic purine dinucleotide +namespace: chebi_ontology +subset: 3_STAR +synonym: "cyclic purine dinucleotide" EXACT [ChEBI] +synonym: "cyclic purine dinucleotides" RELATED [ChEBI] +is_a: CHEBI:36982 ! cyclic purine nucleotide + +[Term] +id: CHEBI:47266 +name: hydrogen bromide +namespace: chebi_ontology +alt_id: CHEBI:29134 +alt_id: CHEBI:31673 +def: "A diatomic molecule containing covalently bonded hydrogen and bromine atoms." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "79.926" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "79.926" RELATED MONOISOTOPIC_MASS [ChemIDplus] +synonym: "80.91194" RELATED MASS [ChEBI] +synonym: "[HBr]" RELATED [IUPAC] +synonym: "Br[H]" RELATED SMILES [ChEBI] +synonym: "BrH" RELATED FORMULA [ChemIDplus] +synonym: "bromane" EXACT IUPAC_NAME [IUPAC] +synonym: "bromidohydrogen" EXACT IUPAC_NAME [IUPAC] +synonym: "bromure d'hydrogene" RELATED [ChEBI] +synonym: "Bromwasserstoff" RELATED [NIST_Chemistry_WebBook] +synonym: "CPELXLSAUQHCOX-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "HBr" RELATED FORMULA [KEGG_COMPOUND] +synonym: "HBr" RELATED [KEGG_COMPOUND] +synonym: "Hydrobromic acid" RELATED [KEGG_COMPOUND] +synonym: "hydrogen bromide" EXACT [NIST_Chemistry_WebBook] +synonym: "hydrogen bromide" EXACT IUPAC_NAME [IUPAC] +synonym: "Hydrogenbromid" RELATED [ChEBI] +synonym: "InChI=1S/BrH/h1H" RELATED InChI [ChEBI] +xref: CAS:10035-10-6 "KEGG COMPOUND" +xref: Gmelin:620 "Gmelin" +xref: KEGG:C13645 +is_a: CHEBI:18140 ! hydrogen halide +is_a: CHEBI:37176 ! mononuclear parent hydride +relationship: is_conjugate_acid_of CHEBI:15858 ! bromide +relationship: is_conjugate_base_of CHEBI:50316 ! bromonium + +[Term] +id: CHEBI:47537 +name: L-glucaric acid +namespace: chebi_ontology +alt_id: CHEBI:21300 +alt_id: CHEBI:47536 +def: "The L-enantiomer of glucaric acid." [] +subset: 3_STAR +synonym: "(2R,3R,4R,5S)-2,3,4,5-tetrahydroxyhexanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "210.038" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "210.13880" RELATED MASS [ChEBI] +synonym: "C6H10O8" RELATED FORMULA [ChEBI] +synonym: "DSLZVSRJTYRBFB-AJSXGEPRSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C6H10O8/c7-1(3(9)5(11)12)2(8)4(10)6(13)14/h1-4,7-10H,(H,11,12)(H,13,14)/t1-,2-,3-,4+/m1/s1" RELATED InChI [ChEBI] +synonym: "L-GLUCARIC ACID" EXACT [PDBeChem] +synonym: "L-glucaric acid" EXACT IUPAC_NAME [IUPAC] +synonym: "O[C@H]([C@@H](O)[C@@H](O)C(O)=O)[C@H](O)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:1728120 "Beilstein" +xref: PDBeChem:LGT +xref: Reaxys:1728120 "Reaxys" +is_a: CHEBI:17301 ! glucaric acid +relationship: is_enantiomer_of CHEBI:16002 ! D-glucaric acid + +[Term] +id: CHEBI:47622 +name: acetate ester +namespace: chebi_ontology +alt_id: CHEBI:13244 +alt_id: CHEBI:13799 +alt_id: CHEBI:22189 +alt_id: CHEBI:2406 +def: "Any carboxylic ester where the carboxylic acid component is acetic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "59.013" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "59.013" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "59.04400" RELATED MASS [ChEBI] +synonym: "acetate" RELATED [ChEBI] +synonym: "acetate esters" RELATED [ChEBI] +synonym: "acetates" RELATED [ChEBI] +synonym: "Acetic ester" RELATED [KEGG_COMPOUND] +synonym: "Acetyl ester" RELATED [KEGG_COMPOUND] +synonym: "acetyl esters" RELATED [ChEBI] +synonym: "an acetyl ester" RELATED [UniProt] +synonym: "C2H3O2R" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C2H3O2R" RELATED FORMULA [ChEBI] +synonym: "CC(=O)O[*]" RELATED SMILES [ChEBI] +xref: KEGG:C01883 +xref: Wikipedia:Acetate#Esters +is_a: CHEBI:33308 ! carboxylic ester +relationship: has_functional_parent CHEBI:15366 ! acetic acid + +[Term] +id: CHEBI:47704 +name: ammonium salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "ammonium salt" EXACT [ChEBI] +synonym: "ammonium salts" RELATED [ChEBI] +synonym: "Ammoniumsalz" RELATED [ChEBI] +synonym: "Ammoniumsalze" RELATED [ChEBI] +is_a: CHEBI:35276 ! ammonium compound +relationship: has_part CHEBI:28938 ! ammonium + +[Term] +id: CHEBI:47779 +name: aminoglycoside +namespace: chebi_ontology +subset: 3_STAR +synonym: "aminoglycosides" RELATED [ChEBI] +is_a: CHEBI:24400 ! glycoside + +[Term] +id: CHEBI:47788 +name: 3-oxo steroid +namespace: chebi_ontology +alt_id: CHEBI:13607 +alt_id: CHEBI:1653 +alt_id: CHEBI:20182 +alt_id: CHEBI:71186 +def: "Any oxo steroid where an oxo substituent is located at position 3." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "273.222" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "273.434" RELATED MASS [ChEBI] +synonym: "3-oxo steroids" RELATED [ChEBI] +synonym: "3-Oxosteroid" RELATED [KEGG_COMPOUND] +synonym: "3-oxosteroids" RELATED [ChEBI] +synonym: "a 3-oxosteroid" RELATED [UniProt] +synonym: "C12C(C3C(C(CC3)*)(C)CC1)CCC4C2(CCC(C4)=O)C" RELATED SMILES [ChEBI] +synonym: "C19H29OR" RELATED FORMULA [ChEBI] +xref: KEGG:C01876 +xref: MetaCyc:3-Oxosteroids +xref: PMID:9811880 "SUBMITTER" +is_a: CHEBI:35789 ! oxo steroid +is_a: CHEBI:3992 ! cyclic ketone + +[Term] +id: CHEBI:47811 +name: penamcarboxylate +namespace: chebi_ontology +subset: 3_STAR +synonym: "penamcarboxylates" RELATED [ChEBI] +is_a: CHEBI:35757 ! monocarboxylic acid anion +is_a: CHEBI:35992 ! penams + +[Term] +id: CHEBI:47857 +name: ureas +namespace: chebi_ontology +alt_id: CHEBI:27220 +alt_id: CHEBI:36947 +subset: 3_STAR +synonym: "urea derivatives" RELATED [ChEBI] +is_a: CHEBI:33256 ! primary amide +relationship: has_functional_parent CHEBI:16199 ! urea + +[Term] +id: CHEBI:47867 +name: indicator +namespace: chebi_ontology +def: "Anything used in a scientific experiment to indicate the presence of a substance or quality, change in a body, etc." [] +subset: 3_STAR +synonym: "Indikator" RELATED [ChEBI] +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:47868 +name: photosensitizing agent +namespace: chebi_ontology +def: "A chemical compound that can be excited by light of a specific wavelength and subsequently transfer energy to a chosen reactant. This is commonly molecular oxygen within a cancer tissue, which is converted to (highly rective) singlet state oxygen. This rapidly reacts with any nearby biomolecules, ultimately killing the cancer cells." [] +subset: 3_STAR +synonym: "photosensitising agent" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:47877 +name: hexose 6-phosphate +namespace: chebi_ontology +subset: 1_STAR +is_a: CHEBI:47878 ! hexose phosphate + +[Term] +id: CHEBI:47878 +name: hexose phosphate +namespace: chebi_ontology +def: "A phospho sugar that is formally obtained from a hexose." [] +subset: 3_STAR +synonym: "hexose phosphate" EXACT [ChEBI] +is_a: CHEBI:33447 ! phospho sugar +is_a: CHEBI:63385 ! hexose derivative + +[Term] +id: CHEBI:47881 +name: 3-oxo monocarboxylic acid +namespace: chebi_ontology +alt_id: CHEBI:13600 +alt_id: CHEBI:1619 +alt_id: CHEBI:35949 +subset: 3_STAR +synonym: "3-Keto acid" RELATED [KEGG_COMPOUND] +synonym: "3-Oxo acid" RELATED [KEGG_COMPOUND] +synonym: "3-oxo monocarboxylic acids" RELATED [ChEBI] +synonym: "3-oxomonocarboxylic acid" RELATED [ChEBI] +synonym: "3-oxomonocarboxylic acids" RELATED [ChEBI] +synonym: "C3H2O3R2" RELATED FORMULA [KEGG_COMPOUND] +xref: KEGG:C01656 +is_a: CHEBI:35871 ! oxo monocarboxylic acid + +[Term] +id: CHEBI:47891 +name: steroid acid +namespace: chebi_ontology +def: "Any steroid substituted by at least one carboxy group." [] +subset: 3_STAR +synonym: "steroid acids" RELATED [ChEBI] +is_a: CHEBI:35341 ! steroid +is_a: CHEBI:64709 ! organic acid + +[Term] +id: CHEBI:47901 +name: alkanesulfonic acid +namespace: chebi_ontology +alt_id: CHEBI:13809 +alt_id: CHEBI:33553 +def: "Organic derivatives of sulfonic acid in which the sulfo group is linked directly to carbon of an alkyl group." [] +subset: 3_STAR +synonym: "alkanesulfonic acid" EXACT [UniProt] +synonym: "alkanesulfonic acids" RELATED [ChEBI] +synonym: "alkylsulfonic acids" RELATED [ChEBI] +is_a: CHEBI:33551 ! organosulfonic acid +relationship: has_part CHEBI:22323 ! alkyl group + +[Term] +id: CHEBI:47909 +name: 3-oxo-Delta(4) steroid +namespace: chebi_ontology +alt_id: CHEBI:13604 +alt_id: CHEBI:1626 +alt_id: CHEBI:20157 +def: "A 3-oxo steroid conjugated to a C=C double bond at the alpha,beta position." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "271.206" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "271.418" RELATED MASS [ChEBI] +synonym: "3-oxo Delta(4)-steroid" RELATED [ChEBI] +synonym: "3-oxo Delta(4)-steroids" RELATED [ChEBI] +synonym: "3-oxo-Delta(4) steroids" RELATED [ChEBI] +synonym: "3-Oxo-delta4-steroid" RELATED [KEGG_COMPOUND] +synonym: "a 3-oxo-Delta(4)-steroid" RELATED [UniProt] +synonym: "C12C(C3C(C(CC3)*)(C)CC1)CCC=4C2(CCC(C4)=O)C" RELATED SMILES [ChEBI] +synonym: "C19H27OR" RELATED FORMULA [ChEBI] +xref: KEGG:C00619 +xref: MetaCyc:3-Oxo-Delta-4-Steroids +is_a: CHEBI:47788 ! 3-oxo steroid +is_a: CHEBI:51689 ! enone +relationship: has_part CHEBI:136849 ! 3-oxo-Delta(4)-steroid group + +[Term] +id: CHEBI:47916 +name: flavonoid +namespace: chebi_ontology +alt_id: CHEBI:13638 +alt_id: CHEBI:24044 +alt_id: CHEBI:5077 +def: "Any member of the 'superclass' flavonoids whose skeleton is based on 1-benzopyran with an aryl substituent at position 2. The term was originally restricted to natural products, but is now also used to describe semi-synthetic and fully synthetic compounds." [] +subset: 3_STAR +synonym: "2-aryl-1-benzopyran" RELATED [ChEBI] +synonym: "2-aryl-1-benzopyrans" RELATED [ChEBI] +synonym: "Flavonoid" EXACT [KEGG_COMPOUND] +synonym: "flavonoid" EXACT [UniProt] +synonym: "flavonoids" RELATED [ChEBI] +xref: KEGG:C01579 +xref: Wikipedia:Flavonoid +is_a: CHEBI:72544 ! flavonoids +relationship: has_functional_parent CHEBI:26004 ! phenylpropanoid +relationship: has_functional_parent CHEBI:38443 ! 1-benzopyran + +[Term] +id: CHEBI:47923 +name: tripeptide +namespace: chebi_ontology +alt_id: CHEBI:27138 +alt_id: CHEBI:9742 +def: "Any molecule that contains three amino-acid residues connected by peptide linkages." [] +subset: 3_STAR +synonym: "C6H8N3O4R3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Tripeptide" EXACT [KEGG_COMPOUND] +synonym: "tripeptides" RELATED [ChEBI] +xref: KEGG:C00316 +is_a: CHEBI:25676 ! oligopeptide + +[Term] +id: CHEBI:47965 +name: N-acetylmuramic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "2-(acetylamino)-3-O-[(1R)-1-carboxyethyl]-2-deoxy-D-glucose" RELATED [IUPAC] +synonym: "2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-D-glucose" EXACT IUPAC_NAME [IUPAC] +synonym: "acetylmuramic acid" RELATED [ChemIDplus] +synonym: "C11H19NO8" RELATED FORMULA [ChEBI] +xref: CAS:1856-93-5 "ChemIDplus" +is_a: CHEBI:25432 ! muramic acids +relationship: is_conjugate_acid_of CHEBI:47978 ! N-acetylmuramate + +[Term] +id: CHEBI:47968 +name: N-acetylmuramic acid 6-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-6-O-phosphono-D-glucose" RELATED [IUPAC] +synonym: "2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-D-glucose 6-(dihydrogen phosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "373.077" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "373.25040" RELATED MASS [ChEBI] +synonym: "C11H20NO11P" RELATED FORMULA [ChEBI] +synonym: "C[C@@H](O[C@H]1[C@H](O)[C@@H](COP(O)(O)=O)OC(O)[C@@H]1NC(C)=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C11H20NO11P/c1-4(10(15)16)22-9-7(12-5(2)13)11(17)23-6(8(9)14)3-21-24(18,19)20/h4,6-9,11,14,17H,3H2,1-2H3,(H,12,13)(H,15,16)(H2,18,19,20)/t4-,6-,7-,8-,9-,11?/m1/s1" RELATED InChI [ChEBI] +synonym: "MurNAc 6-phosphate" RELATED [KEGG_COMPOUND] +synonym: "MurNAc-6-P" RELATED [ChEBI] +synonym: "NMEMTQKUEVNSPV-MKFCKLDKSA-N" RELATED InChIKey [ChEBI] +xref: KEGG:C16698 +is_a: CHEBI:25432 ! muramic acids +relationship: has_functional_parent CHEBI:47965 ! N-acetylmuramic acid +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_acid_of CHEBI:58722 ! N-acetylmuramate 6-phosphate + +[Term] +id: CHEBI:47978 +name: N-acetylmuramate +namespace: chebi_ontology +subset: 1_STAR +synonym: "2-acetamido-3-O-[(1R)-1-carboxylatoethyl]-2-deoxy-D-glucose" EXACT IUPAC_NAME [IUPAC] +synonym: "C11H18NO8" RELATED FORMULA [ChEBI] +is_a: CHEBI:33985 ! muramates +relationship: is_conjugate_base_of CHEBI:47965 ! N-acetylmuramic acid + +[Term] +id: CHEBI:48001 +name: protein synthesis inhibitor +namespace: chebi_ontology +def: "A compound, usually an anti-bacterial agent or a toxin, which inhibits the synthesis of a protein." [] +subset: 3_STAR +synonym: "protein synthesis antagonist" RELATED [ChEBI] +synonym: "protein synthesis antagonists" RELATED [ChEBI] +synonym: "protein synthesis inhibitors" RELATED [ChEBI] +is_a: CHEBI:76932 ! pathway inhibitor + +[Term] +id: CHEBI:48107 +name: nitric acid +namespace: chebi_ontology +alt_id: CHEBI:25545 +alt_id: CHEBI:7580 +def: "A nitrogen oxoacid of formula HNO3 in which the nitrogen atom is bonded to a hydroxy group and by equivalent bonds to the remaining two oxygen atoms." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "62.996" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "62.996" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "63.01280" RELATED MASS [ChEBI] +synonym: "[NO2(OH)]" RELATED [IUPAC] +synonym: "acide azotique" RELATED [ChEBI] +synonym: "acide nitrique" RELATED [ChemIDplus] +synonym: "azotic acid" RELATED [ChemIDplus] +synonym: "GRYLNZFGIOXLOG-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "HNO3" RELATED [IUPAC] +synonym: "HNO3" RELATED FORMULA [ChEBI] +synonym: "HNO3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "HONO2" RELATED [NIST_Chemistry_WebBook] +synonym: "hydrogen nitrate" RELATED [NIST_Chemistry_WebBook] +synonym: "hydrogen trioxonitrate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "hydroxidodioxidonitrogen" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/HNO3/c2-1(3)4/h(H,2,3,4)" RELATED InChI [ChEBI] +synonym: "Nitric acid" EXACT [KEGG_COMPOUND] +synonym: "O[N+]([O-])=O" RELATED SMILES [ChEBI] +synonym: "Salpetersaeure" RELATED [ChemIDplus] +synonym: "trioxonitric acid" EXACT IUPAC_NAME [IUPAC] +xref: CAS:7697-37-2 "ChemIDplus" +xref: Gmelin:1576 "Gmelin" +xref: KEGG:C00244 +xref: KEGG:D02313 +xref: MetaCyc:CPD-15028 +xref: PMID:22285512 "Europe PMC" +xref: PMID:23402861 "Europe PMC" +xref: Reaxys:3587310 "Reaxys" +xref: Wikipedia:Nitric_acid +is_a: CHEBI:33455 ! nitrogen oxoacid +relationship: has_role CHEBI:33893 ! reagent +relationship: has_role CHEBI:48356 ! protic solvent +relationship: is_conjugate_acid_of CHEBI:17632 ! nitrate + +[Term] +id: CHEBI:48136 +name: xanthosines +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:26399 ! purine ribonucleoside + +[Term] +id: CHEBI:48154 +name: sulfur oxide +namespace: chebi_ontology +subset: 3_STAR +synonym: "oxides of sulfur" RELATED [ChEBI] +synonym: "Schwefeloxide" RELATED [ChEBI] +synonym: "sulfur oxides" RELATED [ChEBI] +is_a: CHEBI:24836 ! inorganic oxide +is_a: CHEBI:26835 ! sulfur molecular entity + +[Term] +id: CHEBI:48218 +name: antiseptic drug +namespace: chebi_ontology +def: "A substance used locally on humans and other animals to destroy harmful microorganisms or to inhibit their activity (cf. disinfectants, which destroy microorganisms found on non-living objects, and antibiotics, which can be transported through the lymphatic system to destroy bacteria within the body)." [] +subset: 3_STAR +synonym: "antiseptic" RELATED [ChEBI] +synonym: "antiseptic agent" RELATED [ChEBI] +synonym: "antiseptic agents" RELATED [ChEBI] +synonym: "antiseptics" RELATED [ChEBI] +synonym: "local antiinfective agents" RELATED [ChEBI] +synonym: "local microbicides" RELATED [ChEBI] +synonym: "topical antiinfective agents" RELATED [ChEBI] +synonym: "topical microbicides" RELATED [ChEBI] +xref: Wikipedia:Antiseptic +is_a: CHEBI:35441 ! antiinfective agent + +[Term] +id: CHEBI:48219 +name: disinfectant +namespace: chebi_ontology +def: "An antimicrobial agent that is applied to non-living objects to destroy harmful microorganisms or to inhibit their activity." [] +subset: 3_STAR +synonym: "desinfectant" RELATED [ChEBI] +synonym: "Desinfektionsmittel" RELATED [ChEBI] +synonym: "disinfectants" RELATED [ChEBI] +synonym: "disinfecting agent" RELATED [ChEBI] +is_a: CHEBI:33281 ! antimicrobial agent + +[Term] +id: CHEBI:48354 +name: polar solvent +namespace: chebi_ontology +def: "A solvent that is composed of polar molecules. Polar solvents can dissolve ionic compounds or ionisable covalent compounds." [] +subset: 3_STAR +synonym: "polar solvent" EXACT IUPAC_NAME [IUPAC] +synonym: "polar solvents" RELATED [ChEBI] +is_a: CHEBI:46787 ! solvent + +[Term] +id: CHEBI:48355 +name: non-polar solvent +namespace: chebi_ontology +subset: 1_STAR +synonym: "non-polar solvents" RELATED [ChEBI] +is_a: CHEBI:46787 ! solvent + +[Term] +id: CHEBI:48356 +name: protic solvent +namespace: chebi_ontology +def: "A polar solvent that is capable of acting as a hydron (proton) donor." [] +subset: 3_STAR +synonym: "protogenic solvent" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:39141 ! Bronsted acid +is_a: CHEBI:48354 ! polar solvent + +[Term] +id: CHEBI:48357 +name: aprotic solvent +namespace: chebi_ontology +subset: 1_STAR +synonym: "aprotic solvent" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:46787 ! solvent + +[Term] +id: CHEBI:48358 +name: polar aprotic solvent +namespace: chebi_ontology +def: "A solvent with a comparatively high relative permittivity (or dielectric constant), greater than ca. 15, and a sizable permanent dipole moment, that cannot donate suitably labile hydrogen atoms to form strong hydrogen bonds." [] +subset: 3_STAR +synonym: "dipolar aprotic solvent" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:48354 ! polar solvent +is_a: CHEBI:48357 ! aprotic solvent + +[Term] +id: CHEBI:48359 +name: protophilic solvent +namespace: chebi_ontology +subset: 1_STAR +synonym: "HBA solvent" RELATED [ChEBI] +synonym: "hydrogen bond acceptor solvent" RELATED [ChEBI] +synonym: "protophilic solvent" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:39142 ! Bronsted base +is_a: CHEBI:48354 ! polar solvent + +[Term] +id: CHEBI:48360 +name: amphiprotic solvent +namespace: chebi_ontology +subset: 1_STAR +synonym: "amphiprotic solvent" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:48356 ! protic solvent +is_a: CHEBI:48359 ! protophilic solvent + +[Term] +id: CHEBI:48369 +name: organic bromide salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic bromide salts" RELATED [ChEBI] +is_a: CHEBI:22925 ! bromide salt +is_a: CHEBI:51069 ! organic halide salt + +[Term] +id: CHEBI:48376 +name: carbamimidic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "60.032" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "60.05534" RELATED MASS [ChEBI] +synonym: "carbamimic acid" RELATED [ChemIDplus] +synonym: "carbamimidic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "carbonamidimidic acid" RELATED [IUPAC] +synonym: "CH4N2O" RELATED FORMULA [ChEBI] +synonym: "H2N-C(=NH)-OH" RELATED [IUPAC] +synonym: "H2N-C(OH)=NH" RELATED [IUPAC] +synonym: "HO-C(=NH)-NH2" RELATED [IUPAC] +synonym: "InChI=1S/CH4N2O/c2-1(3)4/h(H4,2,3,4)" RELATED InChI [ChEBI] +synonym: "Isoharnstoff" RELATED [ChEBI] +synonym: "isourea" RELATED [ChemIDplus] +synonym: "NC(O)=N" RELATED SMILES [ChEBI] +synonym: "pseudourea" RELATED [ChemIDplus] +synonym: "XSQUKJJJFZCRTK-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:773698 "Beilstein" +xref: CAS:4744-36-9 "ChemIDplus" +is_a: CHEBI:48379 ! isourea +is_a: CHEBI:64708 ! one-carbon compound +relationship: is_tautomer_of CHEBI:16199 ! urea + +[Term] +id: CHEBI:48377 +name: imidic acid +namespace: chebi_ontology +def: "Compounds derived from oxoacids RkE(=O)l(OH)m (l =/= 0) by replacing =O by =NR; thus tautomers of amides. In organic chemistry an unspecified imidic acid is generally a carboximidic acid, RC(=NR)(OH)." [] +subset: 3_STAR +synonym: "imidic acid" EXACT [ChEBI] +synonym: "imidic acids" EXACT IUPAC_NAME [IUPAC] +synonym: "imidic acids" RELATED [ChEBI] +synonym: "imino acids" RELATED [IUPAC] +is_a: CHEBI:33241 ! oxoacid derivative +is_a: CHEBI:51143 ! nitrogen molecular entity + +[Term] +id: CHEBI:48378 +name: carboximidic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "carboximidic acid" EXACT [ChEBI] +synonym: "carboximidic acids" EXACT IUPAC_NAME [IUPAC] +synonym: "carboximidic acids" RELATED [ChEBI] +is_a: CHEBI:35352 ! organonitrogen compound +is_a: CHEBI:48377 ! imidic acid + +[Term] +id: CHEBI:48379 +name: isourea +namespace: chebi_ontology +def: "A carboximidic acid that is the imidic acid tautomer of urea, H2NC(=NH)OH, and its hydrocarbyl derivatives." [] +subset: 3_STAR +synonym: "isoureas" EXACT IUPAC_NAME [IUPAC] +synonym: "isoureas" RELATED [ChEBI] +is_a: CHEBI:48378 ! carboximidic acid + +[Term] +id: CHEBI:48422 +name: angiogenesis inhibitor +namespace: chebi_ontology +alt_id: CHEBI:67170 +def: "An agent and endogenous substances that antagonize or inhibit the development of new blood vessels." [] +subset: 3_STAR +synonym: "angiogenesis antagonist" RELATED [ChEBI] +synonym: "angiostatic agents" RELATED [ChEBI] +synonym: "anti-angiogenic agent" RELATED [ChEBI] +xref: Wikipedia:Angiogenesis_inhibitor +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:48544 +name: methanesulfonates +namespace: chebi_ontology +def: "Esters or salts of methanesulfonic acid." [] +subset: 3_STAR +is_a: CHEBI:33261 ! organosulfur compound +relationship: has_functional_parent CHEBI:27376 ! methanesulfonic acid + +[Term] +id: CHEBI:48578 +name: radical scavenger +namespace: chebi_ontology +def: "A role played by a substance that can react readily with, and thereby eliminate, radicals." [] +subset: 3_STAR +synonym: "free radical scavengers" RELATED [ChEBI] +synonym: "free-radical scavenger" RELATED [ChEBI] +is_a: CHEBI:22586 ! antioxidant + +[Term] +id: CHEBI:48705 +name: agonist +namespace: chebi_ontology +def: "Substance which binds to cell receptors normally responding to naturally occurring substances and which produces a response of its own." [] +subset: 3_STAR +synonym: "agonist" EXACT IUPAC_NAME [IUPAC] +synonym: "agonista" RELATED [ChEBI] +synonym: "agoniste" RELATED [ChEBI] +synonym: "agonists" RELATED [ChEBI] +is_a: CHEBI:52210 ! pharmacological role + +[Term] +id: CHEBI:48706 +name: antagonist +namespace: chebi_ontology +def: "Substance that attaches to and blocks cell receptors that normally bind naturally occurring substances." [] +subset: 3_STAR +synonym: "antagonist" EXACT IUPAC_NAME [IUPAC] +synonym: "antagonista" RELATED [ChEBI] +synonym: "antagoniste" RELATED [ChEBI] +synonym: "antagonists" RELATED [ChEBI] +is_a: CHEBI:52210 ! pharmacological role + +[Term] +id: CHEBI:48775 +name: cadmium(2+) +namespace: chebi_ontology +alt_id: CHEBI:3290 +alt_id: CHEBI:48773 +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "112.41100" RELATED MASS [ChEBI] +synonym: "113.903" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "[Cd++]" RELATED SMILES [ChEBI] +synonym: "CADMIUM ION" RELATED [PDBeChem] +synonym: "cadmium(2+)" EXACT IUPAC_NAME [IUPAC] +synonym: "cadmium(2+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "cadmium(II) cation" EXACT IUPAC_NAME [IUPAC] +synonym: "cadmium, ion (Cd2+)" RELATED [ChemIDplus] +synonym: "Cd" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cd(2+)" RELATED [IUPAC] +synonym: "Cd(2+)" RELATED [UniProt] +synonym: "Cd2+" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/Cd/q+2" RELATED InChI [ChEBI] +synonym: "WLZRMCYVCSSEQC-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:22537-48-0 "ChemIDplus" +xref: Gmelin:6851 "Gmelin" +xref: KEGG:C01413 +xref: PDBeChem:CD +is_a: CHEBI:30412 ! monoatomic dication +is_a: CHEBI:60240 ! divalent metal cation +is_a: CHEBI:63063 ! cadmium cation + +[Term] +id: CHEBI:48819 +name: cyano group +namespace: chebi_ontology +alt_id: CHEBI:36824 +alt_id: CHEBI:48818 +subset: 3_STAR +synonym: "-C#N" RELATED [IUPAC] +synonym: "-CN" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "26.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "26.01744" RELATED MASS [ChEBI] +synonym: "carbonitrile group" RELATED [ChEBI] +synonym: "CN" RELATED FORMULA [ChEBI] +synonym: "CYANIDE GROUP" RELATED [PDBeChem] +synonym: "cyanido" EXACT IUPAC_NAME [IUPAC] +synonym: "cyano" EXACT IUPAC_NAME [IUPAC] +synonym: "NC-" RELATED [IUPAC] +xref: PDBeChem:CN +is_a: CHEBI:36823 ! pseudohalo group +relationship: is_substituent_group_from CHEBI:18407 ! hydrogen cyanide + +[Term] +id: CHEBI:48828 +name: cobalt(2+) +namespace: chebi_ontology +alt_id: CHEBI:23337 +alt_id: CHEBI:48827 +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "58.933" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "58.93320" RELATED MASS [ChEBI] +synonym: "[Co++]" RELATED SMILES [ChEBI] +synonym: "Co" RELATED FORMULA [ChEBI] +synonym: "Co(2+)" RELATED [UniProt] +synonym: "Co(II)" RELATED [KEGG_COMPOUND] +synonym: "Co2+" RELATED [ChEBI] +synonym: "Co2+" RELATED [KEGG_COMPOUND] +synonym: "COBALT (II) ION" RELATED [PDBeChem] +synonym: "Cobalt(2+)" EXACT [KEGG_COMPOUND] +synonym: "cobalt(2+)" EXACT IUPAC_NAME [IUPAC] +synonym: "cobalt(2+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "cobalt(2+) ion" RELATED [ChEBI] +synonym: "cobalt(II) cation" EXACT IUPAC_NAME [IUPAC] +synonym: "cobalt(II) cation" RELATED [ChEBI] +synonym: "cobaltous ion" RELATED [ChEBI] +synonym: "InChI=1S/Co/q+2" RELATED InChI [ChEBI] +synonym: "XLJKHNWPARRRJB-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:22541-53-3 "ChemIDplus" +xref: Gmelin:6853 "Gmelin" +xref: KEGG:C00175 +xref: PDBeChem:CO +is_a: CHEBI:23336 ! cobalt cation +is_a: CHEBI:30412 ! monoatomic dication +is_a: CHEBI:60240 ! divalent metal cation + +[Term] +id: CHEBI:4883 +name: ethidium bromide +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2,7-diamino-10-ethyl-9-phenylphenanthridinium bromide" RELATED [ChemIDplus] +synonym: "2,7-diamino-9-phenyl-10-ethylphenanthridinium bromide" RELATED [ChemIDplus] +synonym: "3,8-diamino-5-ethyl-6-phenylphenanthridinium bromide" EXACT IUPAC_NAME [IUPAC] +synonym: "393.084" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "393.084" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "394.30800" RELATED MASS [ChEBI] +synonym: "[Br-].CC[n+]1c(-c2ccccc2)c2cc(N)ccc2c2ccc(N)cc12" RELATED SMILES [ChEBI] +synonym: "C21H20BrN3" RELATED FORMULA [ChEBI] +synonym: "C21H20N3.Br" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Dromilac" RELATED [ChemIDplus] +synonym: "EtBr" RELATED [ChEBI] +synonym: "Ethidium bromide" EXACT [KEGG_COMPOUND] +synonym: "Homidium bromide" RELATED [KEGG_COMPOUND] +synonym: "InChI=1S/C21H19N3.BrH/c1-2-24-20-13-16(23)9-11-18(20)17-10-8-15(22)12-19(17)21(24)14-6-4-3-5-7-14;/h3-13,23H,2,22H2,1H3;1H" RELATED InChI [ChEBI] +synonym: "ZMMJGEGLRURXTF-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:3642536 "Beilstein" +xref: CAS:1239-45-8 "ChemIDplus" +xref: KEGG:C11161 +is_a: CHEBI:48369 ! organic bromide salt +relationship: has_part CHEBI:42478 ! ethidium +relationship: has_role CHEBI:36335 ! trypanocidal drug + +[Term] +id: CHEBI:48840 +name: selenite salt +namespace: chebi_ontology +def: "Salts of selenous acid." [] +subset: 3_STAR +synonym: "selenite salts" RELATED [ChEBI] +synonym: "Selenitsalz" RELATED [ChEBI] +synonym: "Selenitsalze" RELATED [ChEBI] +is_a: CHEBI:24866 ! salt +is_a: CHEBI:26626 ! selenites + +[Term] +id: CHEBI:48843 +name: disodium selenite +namespace: chebi_ontology +def: "An inorganic sodium salt composed of sodium and selenite ions in a 2:1 ratio." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "172.93774" RELATED MASS [ChEBI] +synonym: "173.881" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[Na+].[Na+].[O-][Se]([O-])=O" RELATED SMILES [ChEBI] +synonym: "BVTBRVFYZUCAKH-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "disodium selenite" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/2Na.H2O3Se/c;;1-4(2)3/h;;(H2,1,2,3)/q2*+1;/p-2" RELATED InChI [ChEBI] +synonym: "Na2O3Se" RELATED FORMULA [ChEBI] +synonym: "Natriumselenit" RELATED [ChemIDplus] +synonym: "sodium selenite" RELATED [ChemIDplus] +xref: CAS:10102-18-8 "KEGG COMPOUND" +xref: Gmelin:30272 "Gmelin" +xref: KEGG:C18385 +xref: Wikipedia:Sodium_selenite +is_a: CHEBI:38702 ! inorganic sodium salt +is_a: CHEBI:48840 ! selenite salt +relationship: has_role CHEBI:50733 ! nutraceutical + +[Term] +id: CHEBI:48854 +name: sulfurous acid +namespace: chebi_ontology +alt_id: CHEBI:26837 +alt_id: CHEBI:9344 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "81.972" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "82.08008" RELATED MASS [ChEBI] +synonym: "[SO(OH)2]" RELATED [IUPAC] +synonym: "acide sulfureux" RELATED [ChEBI] +synonym: "acido sulfuroso" RELATED [ChEBI] +synonym: "dihydrogen trioxosulfate" EXACT IUPAC_NAME [IUPAC] +synonym: "dihydroxidooxidosulfur" EXACT IUPAC_NAME [IUPAC] +synonym: "H2O3S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "H2SO3" RELATED [IUPAC] +synonym: "InChI=1S/H2O3S/c1-4(2)3/h(H2,1,2,3)" RELATED InChI [ChEBI] +synonym: "LSNNMFCWUKXFEE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "OS(O)=O" RELATED SMILES [ChEBI] +synonym: "S(O)(OH)2" RELATED [IUPAC] +synonym: "schweflige Saeure" RELATED [ChemIDplus] +synonym: "Sulfite" RELATED [KEGG_COMPOUND] +synonym: "Sulfurous acid" EXACT [KEGG_COMPOUND] +synonym: "sulfurous acid" EXACT IUPAC_NAME [IUPAC] +synonym: "sulphurous acid" RELATED [ChemIDplus] +synonym: "trioxosulfuric acid" EXACT IUPAC_NAME [IUPAC] +xref: CAS:7782-99-2 "ChemIDplus" +xref: Gmelin:1458 "Gmelin" +xref: KEGG:C00094 +xref: KNApSAcK:C00019662 +xref: PDBeChem:SO3 +xref: UM-BBD_compID:c0348 "UM-BBD" +is_a: CHEBI:33402 ! sulfur oxoacid +relationship: is_conjugate_acid_of CHEBI:17137 ! hydrogensulfite +relationship: is_tautomer_of CHEBI:29214 ! sulfonic acid + +[Term] +id: CHEBI:48871 +name: galactaric acid anion +namespace: chebi_ontology +alt_id: CHEBI:24136 +alt_id: CHEBI:33799 +subset: 3_STAR +synonym: "galactarate" RELATED [ChEBI] +synonym: "galactarates" RELATED [ChEBI] +synonym: "galactaric acid anions" RELATED [ChEBI] +is_a: CHEBI:24576 ! hexaric acid anion +relationship: is_conjugate_base_of CHEBI:30852 ! galactaric acid + +[Term] +id: CHEBI:48873 +name: cholinergic antagonist +namespace: chebi_ontology +def: "Any drug that binds to but does not activate cholinergic receptors, thereby blocking the actions of acetylcholine or cholinergic agonists." [] +subset: 3_STAR +synonym: "acetylcholine antagonists" RELATED [ChEBI] +synonym: "acetylcholine receptor antagonist" RELATED [IUPHAR] +synonym: "agent anticholinergique" RELATED [ChEBI] +synonym: "agente anticolinergico" RELATED [ChEBI] +synonym: "agentes anticolinergicos" RELATED [ChEBI] +synonym: "anticholinergic agents" RELATED [ChEBI] +synonym: "anticholinergics" RELATED [ChEBI] +synonym: "Anticholinergika" RELATED [ChEBI] +synonym: "Anticholinergikum" RELATED [ChEBI] +synonym: "anticholinergiques" RELATED [ChEBI] +synonym: "anticolinergicos" RELATED [ChEBI] +synonym: "cholinergic-blocking agents" RELATED [ChEBI] +is_a: CHEBI:38323 ! cholinergic drug + +[Term] +id: CHEBI:48901 +name: thiazoles +namespace: chebi_ontology +def: "An azole in which the five-membered heterocyclic aromatic skeleton contains a N atom and one S atom." [] +subset: 3_STAR +is_a: CHEBI:38106 ! organosulfur heterocyclic compound +is_a: CHEBI:68452 ! azole + +[Term] +id: CHEBI:48914 +name: glucaric acid anion +namespace: chebi_ontology +alt_id: CHEBI:24257 +alt_id: CHEBI:33800 +subset: 3_STAR +synonym: "glucarate" RELATED [ChEBI] +synonym: "glucarates" RELATED [ChEBI] +synonym: "glucaric acid anions" RELATED [ChEBI] +is_a: CHEBI:24576 ! hexaric acid anion + +[Term] +id: CHEBI:48923 +name: erythromycin +namespace: chebi_ontology +def: "Any of several wide-spectrum macrolide antibiotics obtained from actinomycete Saccharopolyspora erythraea (formerly known as Streptomyces erythraeus)." [] +subset: 3_STAR +synonym: "eritromicina" RELATED [ChEBI] +synonym: "erthromycin" RELATED [ChEBI] +synonym: "erythromycine" RELATED [ChEBI] +xref: colombos:ERYTHROMYCIN +xref: colombos:ERYTHROMYCIN\:+UNKNOWN +xref: DrugBank:DB00199 +xref: HMDB:HMDB14344 +xref: Patent:US2653899 +xref: Wikipedia:Erythromycin +is_a: CHEBI:23953 ! erythromycins +relationship: has_role CHEBI:35703 ! xenobiotic +relationship: has_role CHEBI:76969 ! bacterial metabolite +relationship: has_role CHEBI:78298 ! environmental contaminant +relationship: is_conjugate_acid_of CHEBI:64290 ! erythromycin cation + +[Term] +id: CHEBI:48929 +name: 3-carboxy-2,3-dihydroxypropanoate +namespace: chebi_ontology +def: "A tartaric acid anion that is the conjugate base of 2,3-dihydroxybutanedioic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "149.009" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "149.07890" RELATED MASS [ChEBI] +synonym: "3-carboxy-2,3-dihydroxypropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "C4H5O6" RELATED FORMULA [ChEBI] +synonym: "FEWJPZIEWOKRBE-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H6O6/c5-1(3(7)8)2(6)4(9)10/h1-2,5-6H,(H,7,8)(H,9,10)/p-1" RELATED InChI [ChEBI] +synonym: "OC(C(O)C([O-])=O)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:3905887 "Beilstein" +xref: Reaxys:3905887 "Reaxys" +is_a: CHEBI:132950 ! tartrate +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:76967 ! human xenobiotic metabolite +relationship: is_conjugate_acid_of CHEBI:30929 ! 2,3-dihydroxybutanedioate +relationship: is_conjugate_base_of CHEBI:15674 ! 2,3-dihydroxybutanedioic acid + +[Term] +id: CHEBI:48975 +name: substituted aniline +namespace: chebi_ontology +subset: 3_STAR +synonym: "substituted anilines" RELATED [ChEBI] +is_a: CHEBI:22562 ! anilines + +[Term] +id: CHEBI:49095 +name: beta-amino-acid anion +namespace: chebi_ontology +subset: 1_STAR +synonym: "beta-amino acid anions" RELATED [ChEBI] +synonym: "beta-amino-acid anion" EXACT [ChEBI] +synonym: "beta-amino-acid anions" RELATED [ChEBI] +is_a: CHEBI:37022 ! amino-acid anion + +[Term] +id: CHEBI:49105 +name: thiamine hydrochloride +namespace: chebi_ontology +def: "A hydrochloride obtained by combining thiamine chloride with one molar equivalent of hydrochloric acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-hydroxyethyl)-4-methyl-1,3-thiazol-3-ium chloride hydrochloride" EXACT IUPAC_NAME [IUPAC] +synonym: "3-[(4-azaniumyl-2-methylpyrimidin-5-yl)methyl]-5-(2-hydroxyethyl)-4-methyl-1,3-thiazol-3-ium dichloride" EXACT IUPAC_NAME [IUPAC] +synonym: "336.058" RELATED MONOISOTOPIC_MASS [KEGG_DRUG] +synonym: "336.058" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "337.270" RELATED MASS [ChEBI] +synonym: "C([N+]=1C(=C(SC1)CCO)C)C=2C(=NC(C)=NC2)N.[Cl-].Cl" RELATED SMILES [ChEBI] +synonym: "C12H17N4OS.HCl.Cl" RELATED FORMULA [KEGG_DRUG] +synonym: "C12H18Cl2N4OS" RELATED FORMULA [ChEBI] +synonym: "DPJRMOMPQZCRJU-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C12H17N4OS.2ClH/c1-8-11(3-4-17)18-7-16(8)6-10-5-14-9(2)15-12(10)13;;/h5,7,17H,3-4,6H2,1-2H3,(H2,13,14,15);2*1H/q+1;;/p-1" RELATED InChI [ChEBI] +synonym: "thiamine chloride hydrochloride" RELATED [ChemIDplus] +synonym: "thiamine dichloride" RELATED [ChemIDplus] +synonym: "thiamine HCl" RELATED [ChemIDplus] +synonym: "thiamine(2+) dichloride" RELATED [ChemIDplus] +synonym: "thiaminium chloride hydrochloride" RELATED [ChemIDplus] +xref: Beilstein:3642937 "Beilstein" +xref: Beilstein:3851771 "Beilstein" +xref: CAS:67-03-8 "ChemIDplus" +xref: Gmelin:31154 "Gmelin" +xref: Gmelin:691133 "Gmelin" +xref: KEGG:D02094 +xref: PMID:12224421 "Europe PMC" +xref: PMID:26616989 "Europe PMC" +xref: PMID:27163892 "Europe PMC" +xref: Reaxys:17124533 "Reaxys" +xref: Wikipedia:Thiamine +is_a: CHEBI:26948 ! thiamine +is_a: CHEBI:36807 ! hydrochloride +relationship: has_part CHEBI:49107 ! thiamine(2+) + +[Term] +id: CHEBI:49107 +name: thiamine(2+) +namespace: chebi_ontology +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "266.120" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "266.36368" RELATED MASS [ChEBI] +synonym: "3-[(4-ammonio-2-methylpyrimidin-5-yl)methyl]-5-(2-hydroxyethyl)-4-methyl-1,3-thiazol-3-ium" EXACT IUPAC_NAME [IUPAC] +synonym: "C12H18N4OS" RELATED FORMULA [ChEBI] +synonym: "Cc1ncc(C[n+]2csc(CCO)c2C)c([NH3+])n1" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C12H17N4OS/c1-8-11(3-4-17)18-7-16(8)6-10-5-14-9(2)15-12(10)13/h5,7,17H,3-4,6H2,1-2H3,(H2,13,14,15)/q+1/p+1" RELATED InChI [ChEBI] +synonym: "JZRWCGZRTZMZEH-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +xref: Beilstein:3627364 "Beilstein" +xref: Gmelin:677220 "Gmelin" +is_a: CHEBI:26948 ! thiamine +relationship: is_conjugate_acid_of CHEBI:18385 ! thiamine(1+) + +[Term] +id: CHEBI:49167 +name: anti-asthmatic drug +namespace: chebi_ontology +def: "A drug used to treat asthma." [] +subset: 3_STAR +synonym: "anti-asthmatic agent" RELATED [ChEBI] +synonym: "anti-asthmatic agents" RELATED [ChEBI] +synonym: "anti-asthmatic drugs" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug +is_a: CHEBI:65023 ! anti-asthmatic agent + +[Term] +id: CHEBI:49201 +name: anti-ulcer drug +namespace: chebi_ontology +def: "One of various classes of drugs with different action mechanisms used to treat or ameliorate peptic ulcer or irritation of the gastrointestinal tract." [] +subset: 3_STAR +synonym: "anti-ulcer agent" RELATED [ChEBI] +synonym: "anti-ulcer agents" RELATED [ChEBI] +synonym: "anti-ulcer drugs" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:49302 +name: 2-hydroxy monocarboxylic acid +namespace: chebi_ontology +alt_id: CHEBI:19626 +alt_id: CHEBI:35967 +subset: 3_STAR +synonym: "2-hydroxy acid" RELATED [ChEBI] +synonym: "2-hydroxy monocarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:35868 ! hydroxy monocarboxylic acid + +[Term] +id: CHEBI:49323 +name: contraceptive drug +namespace: chebi_ontology +def: "A chemical substance that prevents or reduces the probability of conception." [] +subset: 3_STAR +synonym: "contraceptive agent" RELATED [ChEBI] +synonym: "contraceptive drugs" RELATED [ChEBI] +is_a: CHEBI:50689 ! reproductive control drug + +[Term] +id: CHEBI:49537 +name: c-di-GMP +namespace: chebi_ontology +alt_id: CHEBI:47036 +alt_id: CHEBI:49535 +def: "A cyclic purine dinucleotide that is the 3',5'-cyclic dimer of MP." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3',5'-cyclic di-GMP" RELATED [ChEBI] +synonym: "3',5'-Cyclic diguanylic acid" RELATED [KEGG_COMPOUND] +synonym: "690.095" RELATED MONOISOTOPIC_MASS [ChemIDplus] +synonym: "690.41108" RELATED MASS [ChEBI] +synonym: "9,9'-[(2R,3R,3aS,7aR,9R,10R,10aS,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)" EXACT IUPAC_NAME [IUPAC] +synonym: "bis(3',5')-cyclic diguanylic acid" RELATED [ChemIDplus] +synonym: "Bis-(3',5')-cyclic diGMP" RELATED [KEGG_COMPOUND] +synonym: "bis-(3'-5')-cyclic dimeric guanosine monophosphate" RELATED [ChEBI] +synonym: "c-(GpGp)" RELATED [ChemIDplus] +synonym: "C20H24N10O14P2" RELATED FORMULA [ChemIDplus] +synonym: "cdiGMP" RELATED [KEGG_COMPOUND] +synonym: "cGpGp" RELATED [ChemIDplus] +synonym: "Cyclic di-3',5'-guanylate" RELATED [KEGG_COMPOUND] +synonym: "cyclic di-3',5'-guanylic acid" RELATED [UniProt] +synonym: "cyclic di-GMP" RELATED [ChEBI] +synonym: "cyclic diguanylic acid" RELATED [ChemIDplus] +synonym: "cyclic dinucleotide di-GMP" RELATED [ChEBI] +synonym: "cyclic-bis(3',5')diguanylic acid" RELATED [ChemIDplus] +synonym: "cyclic-bis(3'->5') dimeric GMP" RELATED [IUBMB] +synonym: "guanylyl-(3'->5')-3'-guanylic acid, cyclic 3'->5'''-nucleotide" RELATED [ChemIDplus] +synonym: "InChI=1S/C20H24N10O14P2/c21-19-25-13-7(15(33)27-19)23-3-29(13)17-9(31)11-5(41-17)1-39-45(35,36)44-12-6(2-40-46(37,38)43-11)42-18(10(12)32)30-4-24-8-14(30)26-20(22)28-16(8)34/h3-6,9-12,17-18,31-32H,1-2H2,(H,35,36)(H,37,38)(H3,21,25,27,33)(H3,22,26,28,34)/t5-,6-,9-,10-,11-,12-,17-,18-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@@H]2COP(O)(=O)O[C@@H]3[C@@H](COP(O)(=O)O[C@H]2[C@H]1O)O[C@H]([C@@H]3O)n1cnc2c1nc(N)[nH]c2=O" RELATED SMILES [ChEBI] +synonym: "PKFDLKSEZWEFGL-MHARETSRSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:9696190 "Beilstein" +xref: CAS:61093-23-0 "KEGG COMPOUND" +xref: KEGG:C16463 +xref: MetaCyc:C-DI-GMP +xref: PMID:17646358 "Europe PMC" +xref: PMID:19691499 "Europe PMC" +xref: PMID:20577685 "Europe PMC" +xref: PMID:21320509 "Europe PMC" +xref: PMID:22021215 "Europe PMC" +xref: PMID:22661686 "Europe PMC" +xref: PMID:22728658 "Europe PMC" +xref: PMID:22728659 "Europe PMC" +xref: PMID:22728660 "Europe PMC" +xref: PMID:22821967 "Europe PMC" +xref: PMID:23021863 "Europe PMC" +xref: PMID:23023210 "Europe PMC" +xref: PMID:23202856 "Europe PMC" +xref: PMID:23289502 "Europe PMC" +xref: PMID:23299943 "Europe PMC" +xref: Reaxys:9606190 "Reaxys" +is_a: CHEBI:47037 ! cyclic purine dinucleotide +is_a: CHEBI:61295 ! guanyl ribonucleotide +relationship: has_role CHEBI:50846 ! immunomodulator +relationship: has_role CHEBI:62488 ! signalling molecule +relationship: is_conjugate_acid_of CHEBI:58805 ! c-di-GMP(2-) + +[Term] +id: CHEBI:495505 +name: dATP(3-) +namespace: chebi_ontology +def: "A 2'-deoxyribonucleoside triphosphate oxoanion that is the trianion of 2'-deoxyadenosine 5'-triphosphate, arising from deprotonation of three of the four triphosphate OH groups; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "2'-deoxy-5'-O-[({[(hydroxyphosphinato)oxy]phosphinato}oxy)phosphinato]adenosine" EXACT IUPAC_NAME [IUPAC] +synonym: "487.977" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "488.15780" RELATED MASS [ChEBI] +synonym: "C10H13N5O12P3" RELATED FORMULA [ChEBI] +synonym: "dATP trianion" RELATED [ChEBI] +synonym: "InChI=1S/C10H16N5O12P3/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(16)6(25-7)2-24-29(20,21)27-30(22,23)26-28(17,18)19/h3-7,16H,1-2H2,(H,20,21)(H,22,23)(H2,11,12,13)(H2,17,18,19)/p-3/t5-,6+,7+/m0/s1" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@H]1C[C@H](O)[C@@H](COP([O-])(=O)OP([O-])(=O)OP(O)([O-])=O)O1" RELATED SMILES [ChEBI] +synonym: "SUYVUBYJARFZHO-RRKCRQDMSA-K" RELATED InChIKey [ChEBI] +xref: Gmelin:2691379 "Gmelin" +is_a: CHEBI:61662 ! 2'-deoxyribonucleoside triphosphate oxoanion +relationship: is_conjugate_acid_of CHEBI:61404 ! dATP(4-) +relationship: is_conjugate_base_of CHEBI:16284 ! dATP + +[Term] +id: CHEBI:49601 +name: Fe2S2 iron-sulfur cluster +namespace: chebi_ontology +alt_id: CHEBI:21134 +alt_id: CHEBI:49600 +alt_id: CHEBI:64605 +def: "An iron-sulfur cluster containing two iron atoms and two sulfur atoms." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "175.82000" RELATED MASS [ChEBI] +synonym: "2 iron, 2 sulfur cluster" RELATED [SUBMITTER] +synonym: "[2Fe-2S] cluster" RELATED [UniProt] +synonym: "Fe2S2" RELATED FORMULA [ChEBI] +is_a: CHEBI:30408 ! iron-sulfur cluster + +[Term] +id: CHEBI:49637 +name: hydrogen atom +namespace: chebi_ontology +alt_id: CHEBI:24634 +alt_id: CHEBI:49636 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1.00794" RELATED MASS [ChEBI] +synonym: "1.008" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "1H" RELATED [IUPAC] +synonym: "[H]" RELATED SMILES [ChEBI] +synonym: "H" RELATED [IUPAC] +synonym: "H" RELATED FORMULA [ChEBI] +synonym: "hidrogeno" RELATED [ChEBI] +synonym: "hydrogen" EXACT IUPAC_NAME [IUPAC] +synonym: "hydrogen" RELATED [ChEBI] +synonym: "hydrogene" RELATED [ChEBI] +synonym: "InChI=1S/H" RELATED InChI [ChEBI] +synonym: "Wasserstoff" RELATED [ChEBI] +synonym: "YZCKVEUIGOORGS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: WebElements:H +is_a: CHEBI:24835 ! inorganic molecular entity +is_a: CHEBI:25585 ! nonmetal atom +is_a: CHEBI:33559 ! s-block element atom +relationship: has_role CHEBI:33937 ! macronutrient + +[Term] +id: CHEBI:49786 +name: nickel(2+) +namespace: chebi_ontology +alt_id: CHEBI:25517 +alt_id: CHEBI:49785 +def: "An ion of nickel carrying a double positive charge." [] +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "57.935" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "58.69340" RELATED MASS [ChEBI] +synonym: "[Ni++]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/Ni/q+2" RELATED InChI [ChEBI] +synonym: "Ni" RELATED FORMULA [ChEBI] +synonym: "Ni(2+)" RELATED [IUPAC] +synonym: "Ni(2+)" RELATED [UniProt] +synonym: "Ni2+" RELATED [KEGG_COMPOUND] +synonym: "NICKEL (II) ION" RELATED [PDBeChem] +synonym: "nickel(2+)" EXACT IUPAC_NAME [IUPAC] +synonym: "nickel(2+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "nickel(II) cation" EXACT IUPAC_NAME [IUPAC] +synonym: "Nickel, ion (Ni2+)" RELATED [ChemIDplus] +synonym: "nickelous ion" RELATED [ChEBI] +synonym: "VEQPNABPJHWNSG-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:14701-22-5 "ChemIDplus" +xref: Gmelin:6859 "Gmelin" +xref: PDBeChem:NI +xref: PMID:20456924 "Europe PMC" +is_a: CHEBI:25516 ! nickel cation +is_a: CHEBI:30412 ! monoatomic dication +is_a: CHEBI:60240 ! divalent metal cation +is_a: CHEBI:88186 ! metal cation allergen + +[Term] +id: CHEBI:49807 +name: lead(2+) +namespace: chebi_ontology +alt_id: CHEBI:30179 +alt_id: CHEBI:49804 +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "207.20000" RELATED MASS [ChEBI] +synonym: "207.977" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[Pb++]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/Pb/q+2" RELATED InChI [ChEBI] +synonym: "LEAD (II) ION" RELATED [PDBeChem] +synonym: "lead(2+)" EXACT IUPAC_NAME [IUPAC] +synonym: "lead(2+) ion" EXACT IUPAC_NAME [IUPAC] +synonym: "lead(II) cation" EXACT IUPAC_NAME [IUPAC] +synonym: "Lead, ion (Pb2+)" RELATED [ChemIDplus] +synonym: "Pb" RELATED FORMULA [ChEBI] +synonym: "Pb" RELATED [KEGG_COMPOUND] +synonym: "Pb(2+)" RELATED [UniProt] +synonym: "Pb(2+)" RELATED [IUPAC] +synonym: "Pb2+" RELATED [KEGG_COMPOUND] +synonym: "RVPVRDXYQKGNMQ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:14280-50-3 "ChemIDplus" +xref: CAS:7439-92-1 "KEGG COMPOUND" +xref: Gmelin:6861 "Gmelin" +xref: KEGG:C06696 +xref: PDBeChem:PB +is_a: CHEBI:30412 ! monoatomic dication +is_a: CHEBI:60240 ! divalent metal cation +is_a: CHEBI:60252 ! lead cation + +[Term] +id: CHEBI:49870 +name: antimonous acid +namespace: chebi_ontology +alt_id: CHEBI:30296 +alt_id: CHEBI:49869 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "171.912" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "172.78202" RELATED MASS [ChEBI] +synonym: "[H]O[Sb](O[H])O[H]" RELATED SMILES [ChEBI] +synonym: "[Sb(OH)3]" RELATED [IUPAC] +synonym: "antimonous acid" EXACT IUPAC_NAME [IUPAC] +synonym: "H3O3Sb" RELATED FORMULA [ChEBI] +synonym: "H3SbO3" RELATED [IUPAC] +synonym: "InChI=1S/3H2O.Sb/h3*1H2;/q;;;+3/p-3" RELATED InChI [ChEBI] +synonym: "stiborous acid" RELATED [IUPAC] +synonym: "SZOADBKOANDULT-UHFFFAOYSA-K" RELATED InChIKey [ChEBI] +synonym: "trihydroxidoantimony" EXACT IUPAC_NAME [IUPAC] +synonym: "TRIHYDROXYANTIMONITE(III)" RELATED [ChemIDplus] +xref: DrugBank:DB02453 +xref: Gmelin:558348 "Gmelin" +xref: PDBeChem:SBO +is_a: CHEBI:36920 ! antimony oxoacid +relationship: is_conjugate_acid_of CHEBI:30297 ! antimonite + +[Term] +id: CHEBI:49976 +name: zinc dichloride +namespace: chebi_ontology +def: "A compound of zinc and chloride ions in the ratio 1:2. It exists in four crystalline forms, in each of which the Zn(2+) ions are trigonal planar coordinated to four chloride ions." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "133.867" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "136.29540" RELATED MASS [ChEBI] +synonym: "[Cl-].[Cl-].[Zn++]" RELATED SMILES [ChEBI] +synonym: "butter of zinc" RELATED [ChemIDplus] +synonym: "chlorure de zinc" RELATED [ChemIDplus] +synonym: "Cl2Zn" RELATED FORMULA [ChEBI] +synonym: "dichlorozinc" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/2ClH.Zn/h2*1H;/q;;+2/p-2" RELATED InChI [ChEBI] +synonym: "JIAARYAFYJHUJI-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "zinc chloride" RELATED [ChemIDplus] +synonym: "zinc chloride, anhydrous" RELATED [NIST_Chemistry_WebBook] +synonym: "zinc dichloride" EXACT IUPAC_NAME [IUPAC] +synonym: "zinc(2+) chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "zinc(II) chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "Zinkchlorid" RELATED [ChemIDplus] +synonym: "ZnCl2" RELATED [IUPAC] +xref: CAS:7646-85-7 "NIST Chemistry WebBook" +xref: Gmelin:430396 "Gmelin" +xref: KEGG:D02058 +xref: MolBase:1125 +xref: PMID:23021350 "Europe PMC" +xref: PMID:23399499 "Europe PMC" +xref: PMID:23471775 "Europe PMC" +xref: PMID:23514640 "Europe PMC" +xref: PMID:23546181 "Europe PMC" +xref: PMID:23574241 "Europe PMC" +xref: PMID:23739012 "Europe PMC" +xref: PMID:23761032 "Europe PMC" +xref: PMID:23763136 "Europe PMC" +xref: PMID:7615984 "Europe PMC" +xref: PMID:9730919 "Europe PMC" +xref: Wikipedia:Zinc_Chloride +is_a: CHEBI:27364 ! zinc molecular entity +is_a: CHEBI:36093 ! inorganic chloride +relationship: has_role CHEBI:39143 ! Lewis acid +relationship: has_role CHEBI:48219 ! disinfectant +relationship: has_role CHEBI:74783 ! astringent +relationship: has_role CHEBI:86385 ! EC 5.3.3.5 (cholestenol Delta-isomerase) inhibitor + +[Term] +id: CHEBI:50007 +name: antimony coordination entity +namespace: chebi_ontology +subset: 3_STAR +synonym: "antimony coordination compounds" RELATED [ChEBI] +synonym: "antimony coordination entities" RELATED [ChEBI] +synonym: "antimony coordination entity" EXACT [ChEBI] +is_a: CHEBI:36919 ! antimony molecular entity + +[Term] +id: CHEBI:50047 +name: organic amino compound +namespace: chebi_ontology +def: "A compound formally derived from ammonia by replacing one, two or three hydrogen atoms by organyl groups." [] +subset: 3_STAR +synonym: "organic amino compounds" RELATED [ChEBI] +is_a: CHEBI:35352 ! organonitrogen compound +relationship: has_parent_hydride CHEBI:16134 ! ammonia +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:50091 +name: S-nitrosoglutathione +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "336.074" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "336.32280" RELATED MASS [ChEBI] +synonym: "C10H16N4O7S" RELATED FORMULA [ChEBI] +synonym: "glutathione thionitrite" RELATED [ChemIDplus] +synonym: "GSNO" RELATED [ChemIDplus] +synonym: "HYHSBSXUHZOYLX-WDSKDSINSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C10H16N4O7S/c11-5(10(19)20)1-2-7(15)13-6(4-22-14-21)9(18)12-3-8(16)17/h5-6H,1-4,11H2,(H,12,18)(H,13,15)(H,16,17)(H,19,20)/t5-,6-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-gamma-glutamyl-S-nitroso-L-cysteinylglycine" EXACT IUPAC_NAME [IUPAC] +synonym: "N-(N-L-gamma-glutamyl-S-nitroso-L-cysteinyl)glycine" RELATED [ChemIDplus] +synonym: "N[C@@H](CCC(=O)N[C@@H](CSN=O)C(=O)NCC(O)=O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "nitrosoglutathione" RELATED [ChemIDplus] +synonym: "SNOG" RELATED [ChemIDplus] +xref: Beilstein:3566211 "ChemIDplus" +xref: CAS:57564-91-7 "ChemIDplus" +xref: colombos:GSNO +is_a: CHEBI:24337 ! glutathione derivative + +[Term] +id: CHEBI:50102 +name: N-methyl-N-nitrosourea +namespace: chebi_ontology +alt_id: CHEBI:25565 +alt_id: CHEBI:34843 +alt_id: CHEBI:50101 +def: "A member of the class of N-nitrosoureas that is urea in which one of the nitrogens is substituted by methyl and nitroso groups." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-(aminocarbonyl)-1-methyl-2-oxohydrazine" RELATED [NIST_Chemistry_WebBook] +synonym: "1-methyl-1-nitrosourea" EXACT IUPAC_NAME [IUPAC] +synonym: "1-nitroso-1-methylurea" RELATED [ChemIDplus] +synonym: "103.038" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "103.08012" RELATED MASS [ChEBI] +synonym: "C2H5N3O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CN(N=O)C(N)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C2H5N3O2/c1-5(4-7)2(3)6/h1H3,(H2,3,6)" RELATED InChI [ChEBI] +synonym: "Methylnitrosoharnstoff" RELATED [ChEBI] +synonym: "Methylnitrosourea" RELATED [KEGG_COMPOUND] +synonym: "methylnitrosouree" RELATED [ChemIDplus] +synonym: "MNU" RELATED [ChemIDplus] +synonym: "N-methyl-N-nitrosocarbamide" RELATED [ChemIDplus] +synonym: "N-Methyl-N-nitrosoharnstoff" RELATED [ChEBI] +synonym: "N-Methyl-N-nitrosourea" EXACT [KEGG_COMPOUND] +synonym: "N-methyl-N-nitrosouree" RELATED [ChEBI] +synonym: "N-nitroso-N-methylcarbamide" RELATED [NIST_Chemistry_WebBook] +synonym: "N-Nitroso-N-methylharnstoff" RELATED [ChEBI] +synonym: "N-nitroso-N-methylurea" RELATED [ChemIDplus] +synonym: "N-nitroso-N-methyluree" RELATED [ChEBI] +synonym: "N-nitrosomethylurea" RELATED [NIST_Chemistry_WebBook] +synonym: "nitrosomethylurea" RELATED [NIST_Chemistry_WebBook] +synonym: "NMH" RELATED [ChemIDplus] +synonym: "NMU" RELATED [ChemIDplus] +synonym: "ZRKWMRDKSOPRRS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1756040 "Beilstein" +xref: CAS:684-93-5 "NIST Chemistry WebBook" +xref: KEGG:C14595 +xref: PMID:11479921 "Europe PMC" +xref: PMID:12767522 "Europe PMC" +xref: PMID:15990165 "Europe PMC" +xref: PMID:19181008 "Europe PMC" +xref: PMID:24441676 "Europe PMC" +xref: PMID:6243984 "Europe PMC" +xref: PMID:8098217 "Europe PMC" +xref: PMID:8603364 "Europe PMC" +xref: Wikipedia:N-Methyl-N-nitrosourea +is_a: CHEBI:76551 ! N-nitrosoureas +relationship: has_role CHEBI:22333 ! alkylating agent +relationship: has_role CHEBI:50903 ! carcinogenic agent +relationship: has_role CHEBI:50905 ! teratogenic agent + +[Term] +id: CHEBI:50103 +name: excitatory amino acid agonist +namespace: chebi_ontology +def: "An agent that binds to and activates excitatory amino acid receptors." [] +subset: 3_STAR +synonym: "excitatory amino acid agonists" RELATED [ChEBI] +synonym: "excitatory amino acid receptor agonist" RELATED [ChEBI] +synonym: "excitatory amino acid receptor agonists" RELATED [ChEBI] +is_a: CHEBI:35942 ! neurotransmitter agent + +[Term] +id: CHEBI:50112 +name: sex hormone +namespace: chebi_ontology +def: "Any hormone that is responsible for controlling sexual characteristics and reproductive function." [] +subset: 3_STAR +synonym: "Geschlechtshormon" RELATED [ChEBI] +synonym: "Geschlechtshormone" RELATED [ChEBI] +synonym: "hormone sexuelle" RELATED [ChEBI] +synonym: "hormones sexuelles" RELATED [ChEBI] +synonym: "sex hormones" RELATED [ChEBI] +synonym: "Sexualhormon" RELATED [ChEBI] +synonym: "Sexualhormone" RELATED [ChEBI] +is_a: CHEBI:24621 ! hormone + +[Term] +id: CHEBI:50114 +name: estrogen +namespace: chebi_ontology +def: "A hormone that stimulates or controls the development and maintenance of female sex characteristics in mammals by binding to oestrogen receptors. The oestrogens are named for their importance in the oestrous cycle. The oestrogens that occur naturally in the body, notably estrone, estradiol, estriol, and estetrol are steroids. Other compounds with oestrogenic activity are produced by plants (phytoestrogens) and fungi (mycoestrogens); synthetic compounds with oestrogenic activity are known as xenoestrogens." [] +subset: 3_STAR +synonym: "Estrogene" RELATED [ChEBI] +synonym: "estrogene" RELATED [ChEBI] +synonym: "estrogenes" RELATED [ChEBI] +synonym: "estrogenes Hormon" RELATED [ChEBI] +synonym: "estrogeno" RELATED [ChEBI] +synonym: "estrogenos" RELATED [ChEBI] +synonym: "estrogens" RELATED [ChEBI] +synonym: "Oestrogen" RELATED [ChEBI] +synonym: "oestrogen" RELATED [ChEBI] +synonym: "Oestrogene" RELATED [ChEBI] +synonym: "oestrogene" RELATED [ChEBI] +synonym: "oestrogenes" RELATED [ChEBI] +synonym: "oestrogens" RELATED [ChEBI] +xref: Wikipedia:Estrogen +is_a: CHEBI:50112 ! sex hormone + +[Term] +id: CHEBI:50160 +name: steroid acid anion +namespace: chebi_ontology +def: "Any anion formed by loss of a proton from a steroid acid." [] +subset: 3_STAR +synonym: "steroid acid anions" RELATED [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion + +[Term] +id: CHEBI:50176 +name: keratolytic drug +namespace: chebi_ontology +def: "A drug that softens, separates, and causes desquamation of the cornified epithelium or horny layer of skin. Keratolytic drugs are used to expose mycelia of infecting fungi or to treat corns, warts, and certain other skin diseases." [] +subset: 3_STAR +synonym: "desquamating agent" RELATED [ChEBI] +synonym: "keratolytic agent" RELATED [ChEBI] +synonym: "keratolytic drugs" RELATED [ChEBI] +synonym: "skin-peeling agent" RELATED [ChEBI] +is_a: CHEBI:50177 ! dermatologic drug + +[Term] +id: CHEBI:50177 +name: dermatologic drug +namespace: chebi_ontology +def: "A drug used to treat or prevent skin disorders or for the routine care of skin." [] +subset: 3_STAR +synonym: "dermatologic agent" RELATED [ChEBI] +synonym: "dermatologic drugs" RELATED [ChEBI] +synonym: "dermatological agent" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:50247 +name: antidote +namespace: chebi_ontology +def: "Any protective agent counteracting or neutralizing the action of poisons." [] +subset: 3_STAR +synonym: "antidotes" RELATED [ChEBI] +is_a: CHEBI:50267 ! protective agent + +[Term] +id: CHEBI:50248 +name: hematologic agent +namespace: chebi_ontology +def: "Drug that acts on blood and blood-forming organs and those that affect the hemostatic system." [] +subset: 3_STAR +synonym: "hematologic agents" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:50249 +name: anticoagulant +namespace: chebi_ontology +def: "An agent that prevents blood clotting." [] +subset: 3_STAR +synonym: "anticoagulante" RELATED [ChEBI] +synonym: "anticoagulants" RELATED [ChEBI] +is_a: CHEBI:50248 ! hematologic agent + +[Term] +id: CHEBI:50263 +name: 2-hydroxydicarboxylic acid +namespace: chebi_ontology +alt_id: CHEBI:1154 +alt_id: CHEBI:19636 +def: "Any dicarboxylic acid carrying a hydroxy group on the carbon atom at position alpha to the carboxy group." [] +subset: 3_STAR +synonym: "2-Hydroxydicarboxylic acid" EXACT [KEGG_COMPOUND] +synonym: "2-hydroxydicarboxylic acids" RELATED [ChEBI] +synonym: "C3H4O5(CH2)n" RELATED FORMULA [KEGG_COMPOUND] +xref: KEGG:C03668 +is_a: CHEBI:35692 ! dicarboxylic acid + +[Term] +id: CHEBI:50266 +name: prodrug +namespace: chebi_ontology +def: "A compound that, on administration, must undergo chemical conversion by metabolic processes before becoming the pharmacologically active drug for which it is a prodrug." [] +subset: 3_STAR +synonym: "Prodrugs" RELATED [ChEBI] +xref: PMID:23993918 "Europe PMC" +xref: PMID:23998799 "Europe PMC" +xref: PMID:24329110 "Europe PMC" +xref: PMID:24628402 "Europe PMC" +xref: PMID:24709544 "Europe PMC" +xref: PMID:25144792 "Europe PMC" +xref: PMID:25157234 "Europe PMC" +xref: PMID:25269430 "Europe PMC" +xref: PMID:25391982 "Europe PMC" +xref: PMID:25591121 "Europe PMC" +xref: PMID:25620096 "Europe PMC" +xref: PMID:25795057 "Europe PMC" +xref: PMID:26028253 "Europe PMC" +xref: PMID:26184144 "Europe PMC" +xref: PMID:28070577 "Europe PMC" +xref: PMID:28215138 "Europe PMC" +xref: PMID:28219047 "Europe PMC" +xref: PMID:28259775 "Europe PMC" +xref: PMID:28319647 "Europe PMC" +xref: PMID:28329729 "Europe PMC" +xref: PMID:28334528 "Europe PMC" +xref: Wikipedia:Prodrug +is_a: CHEBI:136859 ! pro-agent +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:50267 +name: protective agent +namespace: chebi_ontology +def: "Synthetic or natural substance which is given to prevent a disease or disorder or are used in the process of treating a disease or injury due to a poisonous agent." [] +subset: 3_STAR +synonym: "chemoprotectant" RELATED [ChEBI] +synonym: "chemoprotectants" RELATED [ChEBI] +synonym: "chemoprotective agent" RELATED [ChEBI] +synonym: "chemoprotective agents" RELATED [ChEBI] +synonym: "protective agents" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:50276 +name: EC 5.99.1.2 (DNA topoisomerase) inhibitor +namespace: chebi_ontology +def: "A topoisomerase inhibitor that inhibits the bacterial enzymes of the DNA topoisomerases, Type I class (EC 5.99.1.2) that catalyze ATP-independent breakage of one of the two strands of DNA, passage of the unbroken strand through the break, and rejoining of the broken strand. These bacterial enzymes reduce the topological stress in the DNA structure by relaxing negatively, but not positively, supercoiled DNA." [] +subset: 3_STAR +synonym: "DNA topoisomerase inhibitor" RELATED [ChEBI] +synonym: "DNA topoisomerase inhibitors" RELATED [ChEBI] +synonym: "EC 5.99.1.2 (DNA topoisomerase) inhibitors" RELATED [ChEBI] +synonym: "EC 5.99.1.2 (topoisomerase I) inhibitor" RELATED [ChEBI] +synonym: "EC 5.99.1.2 (topoisomerase I) inhibitors" RELATED [ChEBI] +synonym: "EC 5.99.1.2 inhibitor" RELATED [ChEBI] +synonym: "EC 5.99.1.2 inhibitors" RELATED [ChEBI] +synonym: "topoisomerase I (EC 5.99.1.2) inhibitor" RELATED [ChEBI] +synonym: "topoisomerase I (EC 5.99.1.2) inhibitors" RELATED [ChEBI] +synonym: "topoisomerase I inhibitor" RELATED [ChEBI] +synonym: "topoisomerase I inhibitors" RELATED [ChEBI] +synonym: "type I DNA topoisomerase inhibitor" RELATED [ChEBI] +synonym: "type I DNA topoisomerase inhibitors" RELATED [ChEBI] +is_a: CHEBI:70727 ! topoisomerase inhibitor + +[Term] +id: CHEBI:50312 +name: onium compound +namespace: chebi_ontology +subset: 1_STAR +synonym: "onium compound" EXACT [ChEBI] +synonym: "onium compounds" EXACT IUPAC_NAME [IUPAC] +synonym: "onium compounds" RELATED [ChEBI] +is_a: CHEBI:37577 ! heteroatomic molecular entity + +[Term] +id: CHEBI:50313 +name: onium cation +namespace: chebi_ontology +def: "Mononuclear cations derived by addition of a hydron to a mononuclear parent hydride of the pnictogen, chalcogen and halogen families." [] +subset: 3_STAR +synonym: "onium cations" EXACT IUPAC_NAME [IUPAC] +synonym: "onium cations" RELATED [ChEBI] +synonym: "onium ion" RELATED [ChEBI] +synonym: "onium ions" RELATED [ChEBI] +is_a: CHEBI:50312 ! onium compound + +[Term] +id: CHEBI:50315 +name: chloronium +namespace: chebi_ontology +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "36.985" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "37.46858" RELATED MASS [ChEBI] +synonym: "[ClH2](+)" RELATED [IUPAC] +synonym: "[H][Cl+][H]" RELATED SMILES [ChEBI] +synonym: "chloranium" EXACT IUPAC_NAME [IUPAC] +synonym: "chloronium" EXACT IUPAC_NAME [IUPAC] +synonym: "ClH2" RELATED FORMULA [ChEBI] +synonym: "H2Cl(+)" RELATED [IUPAC] +synonym: "IGJWHVUMEJASKV-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/ClH2/h1H2/q+1" RELATED InChI [ChEBI] +xref: Gmelin:331 "Gmelin" +is_a: CHEBI:50313 ! onium cation +relationship: is_conjugate_acid_of CHEBI:17883 ! hydrogen chloride + +[Term] +id: CHEBI:50316 +name: bromonium +namespace: chebi_ontology +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "80.934" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "81.91988" RELATED MASS [ChEBI] +synonym: "[BrH2](+)" RELATED [ChEBI] +synonym: "[H][Br+][H]" RELATED SMILES [ChEBI] +synonym: "BrH2" RELATED FORMULA [ChEBI] +synonym: "bromanium" EXACT IUPAC_NAME [IUPAC] +synonym: "bromonium" EXACT IUPAC_NAME [IUPAC] +synonym: "H2Br(+)" RELATED [IUPAC] +synonym: "InChI=1S/BrH2/h1H2/q+1" RELATED InChI [ChEBI] +synonym: "IWNNBBVLEFUBNE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Gmelin:719134 "Gmelin" +is_a: CHEBI:50313 ! onium cation +relationship: is_conjugate_acid_of CHEBI:47266 ! hydrogen bromide + +[Term] +id: CHEBI:50325 +name: proteinogenic amino-acid side-chain group +namespace: chebi_ontology +def: "A univalent organyl group obtained by cleaving the bond from C-2 to the side chain of a proteinogenic amino-acid." [] +subset: 3_STAR +synonym: "canonical amino-acid side-chain" RELATED [ChEBI] +synonym: "canonical amino-acid side-chains" RELATED [ChEBI] +synonym: "proteinogenic amino-acid side-chain" RELATED [ChEBI] +synonym: "proteinogenic amino-acid side-chain groups" RELATED [ChEBI] +synonym: "proteinogenic amino-acid side-chains" RELATED [ChEBI] +is_a: CHEBI:33249 ! organyl group + +[Term] +id: CHEBI:50326 +name: sulfanylmethyl group +namespace: chebi_ontology +subset: 3_STAR +synonym: "-CH2-SH" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "46.996" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "47.10052" RELATED MASS [ChEBI] +synonym: "CH3S" RELATED FORMULA [ChEBI] +synonym: "cysteine side-chain" RELATED [ChEBI] +synonym: "HS-CH2-" RELATED [IUPAC] +synonym: "sulfanylmethyl" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group + +[Term] +id: CHEBI:50330 +name: 2-amino-2-oxoethyl group +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-amino-2-oxoethyl" EXACT IUPAC_NAME [IUPAC] +synonym: "58.029" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "58.05930" RELATED MASS [ChEBI] +synonym: "asparagine side-chain" RELATED [ChEBI] +synonym: "C2H4NO" RELATED FORMULA [ChEBI] +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group + +[Term] +id: CHEBI:50331 +name: 3-amino-3-oxopropyl group +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3-amino-3-oxopropyl" EXACT IUPAC_NAME [IUPAC] +synonym: "72.045" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "72.08588" RELATED MASS [ChEBI] +synonym: "C3H6NO" RELATED FORMULA [ChEBI] +synonym: "glutamine side-chain" RELATED [ChEBI] +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group + +[Term] +id: CHEBI:50336 +name: 4-hydroxybenzyl group +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "107.050" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "107.12988" RELATED MASS [ChEBI] +synonym: "4-hydroxybenzyl" EXACT IUPAC_NAME [IUPAC] +synonym: "C7H7O" RELATED FORMULA [ChEBI] +synonym: "tyrosine side-chain" RELATED [ChEBI] +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group + +[Term] +id: CHEBI:50337 +name: 1H-indol-3-ylmethyl group +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "130.066" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "130.16656" RELATED MASS [ChEBI] +synonym: "1H-indol-3-ylmethyl" EXACT IUPAC_NAME [IUPAC] +synonym: "C9H8N" RELATED FORMULA [ChEBI] +synonym: "tryptophan side-chain" RELATED [ChEBI] +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group + +[Term] +id: CHEBI:50339 +name: 4-aminobutyl group +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "4-aminobutyl" EXACT IUPAC_NAME [IUPAC] +synonym: "72.081" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "72.12894" RELATED MASS [ChEBI] +synonym: "C4H10N" RELATED FORMULA [ChEBI] +synonym: "lysine side-chain" RELATED [ChEBI] +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group +relationship: is_substituent_group_from CHEBI:43799 ! butan-1-amine + +[Term] +id: CHEBI:50340 +name: 3-carbamimidamidopropyl group +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "100.087" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "100.14242" RELATED MASS [ChEBI] +synonym: "3-(carbamimidoylamino)propyl" RELATED [IUPAC] +synonym: "3-carbamimidamidopropyl" EXACT IUPAC_NAME [IUPAC] +synonym: "3-guanidinopropyl" RELATED [ChEBI] +synonym: "arginine side-chain" RELATED [ChEBI] +synonym: "C4H10N3" RELATED FORMULA [ChEBI] +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group + +[Term] +id: CHEBI:50341 +name: 1-hydroxyethyl group +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-hydroxyethyl" EXACT IUPAC_NAME [IUPAC] +synonym: "45.034" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "45.06050" RELATED MASS [ChEBI] +synonym: "C2H5O" RELATED FORMULA [ChEBI] +synonym: "threonine side-chain" RELATED [ChEBI] +is_a: CHEBI:50325 ! proteinogenic amino-acid side-chain group + +[Term] +id: CHEBI:50416 +name: D-glucose 3-phosphate +namespace: chebi_ontology +subset: 3_STAR +synonym: "3-O-phosphono-D-glucose" RELATED [IUPAC] +synonym: "C6H13O9P" RELATED FORMULA [ChEBI] +synonym: "D-glucose 3-(dihydrogen phosphate)" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:21006 ! D-glucose monophosphate + +[Term] +id: CHEBI:5044 +name: ferrioxamine B +namespace: chebi_ontology +def: "A Fe(III)-complexed hydroxamate siderophore comprising equimolar amounts of iron(3+) and desferrioxamine B(3-)" [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "613.265" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "613.50500" RELATED MASS [ChEBI] +synonym: "[N-(5-aminopentyl)-N-(hydroxy-kappaO)-N'-{5-[(hydroxy-kappaO){4-[(5-{(hydroxy-kappaO)[1-(oxo-kappaO)ethyl]amino}pentyl)amino]-4-oxo-1-(oxo-kappaO)butyl}amino]pentyl}succinamidato(3-)-kappaO(1)]iron" EXACT IUPAC_NAME [IUPAC] +synonym: "C25H45FeN6O8" RELATED FORMULA [ChEBI] +synonym: "CC(=O)N1CCCCCNC(=O)CCC(=O)N2CCCCCNC(=O)CCC(=O)N(CCCCCN)O[Fe](O1)O2" RELATED SMILES [ChEBI] +synonym: "Desferal-iron(III)" RELATED [KEGG_COMPOUND] +synonym: "Ferrioxamine" RELATED [KEGG_COMPOUND] +synonym: "Ferroxamine" RELATED [KEGG_COMPOUND] +synonym: "iron(3+) [acetyl(27-amino-11,22-dioxido-7,10,18,21-tetraoxo-6,11,17,22-tetraazaheptacos-1-yl)amino]oxidanide" EXACT IUPAC_NAME [IUPAC] +xref: CAS:14836-73-8 "KEGG COMPOUND" +xref: KEGG:C07597 +xref: PDBeChem:0UE +xref: PMID:24606332 "Europe PMC" +xref: Reaxys:16078693 "Reaxys" +is_a: CHEBI:84688 ! Fe(III)-complexed hydroxamate siderophore +relationship: has_part CHEBI:29034 ! iron(3+) +relationship: has_part CHEBI:84700 ! desferrioxamine B(3-) + +[Term] +id: CHEBI:50441 +name: N-substituted diamine +namespace: chebi_ontology +subset: 1_STAR +synonym: "N-substituted diamine" EXACT [ChEBI] +synonym: "N-substituted diamines" RELATED [ChEBI] +is_a: CHEBI:23666 ! diamine + +[Term] +id: CHEBI:50453 +name: desferrioxamine +namespace: chebi_ontology +subset: 1_STAR +synonym: "desferrioxamines" RELATED [ChEBI] +is_a: CHEBI:24650 ! hydroxamic acid + +[Term] +id: CHEBI:50454 +name: acyclic desferrioxamine +namespace: chebi_ontology +subset: 1_STAR +synonym: "acyclic desferrioxamines" RELATED [ChEBI] +is_a: CHEBI:50453 ! desferrioxamine + +[Term] +id: CHEBI:50471 +name: primary arylamine +namespace: chebi_ontology +def: "A primary amine formally derived from ammonia by replacing one hydrogen atom by an aryl group." [] +subset: 3_STAR +synonym: "primary arylamine" EXACT [ChEBI] +is_a: CHEBI:32877 ! primary amine +is_a: CHEBI:33860 ! aromatic amine + +[Term] +id: CHEBI:50505 +name: sweetening agent +namespace: chebi_ontology +def: "Substance that sweeten food, beverages, medications, etc." [] +subset: 3_STAR +synonym: "sweetener" RELATED [ChEBI] +synonym: "sweeteners" RELATED [ChEBI] +is_a: CHEBI:35617 ! flavouring agent + +[Term] +id: CHEBI:50511 +name: bipyridines +namespace: chebi_ontology +def: "Compounds containing a bipyridine group." [] +subset: 3_STAR +synonym: "bipyridyls" RELATED [ChEBI] +is_a: CHEBI:36820 ! ring assembly +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound +is_a: CHEBI:64459 ! biaryl + +[Term] +id: CHEBI:50525 +name: phenolate anion +namespace: chebi_ontology +def: "An organic anion arising from deprotonation of the OH function of a phenol compound." [] +subset: 3_STAR +synonym: "phenolate anions" RELATED [ChEBI] +is_a: CHEBI:25696 ! organic anion + +[Term] +id: CHEBI:50562 +name: tartrate salt +namespace: chebi_ontology +def: "A salt of the organic compound tartaric acid." [] +subset: 3_STAR +synonym: "tartrate" RELATED [ChEBI] +synonym: "tartrate salts" RELATED [ChEBI] +synonym: "tartrates" RELATED [ChEBI] +is_a: CHEBI:24868 ! organic salt + +[Term] +id: CHEBI:50566 +name: nitric oxide donor +namespace: chebi_ontology +alt_id: CHEBI:77704 +def: "An agent, with unique chemical structure and biochemical requirements, which generates nitric oxide." [] +subset: 3_STAR +synonym: "nitric oxide donors" RELATED [ChEBI] +synonym: "nitric oxide generators" RELATED [ChEBI] +synonym: "nitric oxide releasing agent" RELATED [ChEBI] +synonym: "nitric oxide releasing agents" RELATED [ChEBI] +synonym: "NO donor" RELATED [ChEBI] +synonym: "NO donors" RELATED [ChEBI] +synonym: "NO generator" RELATED [ChEBI] +synonym: "NO generators" RELATED [ChEBI] +synonym: "NO releasing agent" RELATED [ChEBI] +synonym: "NO releasing agents" RELATED [ChEBI] +is_a: CHEBI:17891 ! donor + +[Term] +id: CHEBI:50584 +name: alkyl alcohol +namespace: chebi_ontology +alt_id: CHEBI:22937 +alt_id: CHEBI:50581 +def: "An aliphatic alcohol in which the aliphatic alkane chain is substituted by a hydroxy group at unspecified position." [] +subset: 3_STAR +synonym: "alkyl alcohols" RELATED [ChEBI] +synonym: "hydroxyalkane" RELATED [ChEBI] +synonym: "hydroxyalkanes" RELATED [ChEBI] +is_a: CHEBI:2571 ! aliphatic alcohol + +[Term] +id: CHEBI:50630 +name: cyclooxygenase 1 inhibitor +namespace: chebi_ontology +def: "A cyclooxygenase inhibitor that interferes with the action of cyclooxygenase 1." [] +subset: 3_STAR +synonym: "COX-1 inhibitor" RELATED [ChEBI] +synonym: "COX-1 inhibitors" RELATED [ChEBI] +synonym: "cyclo-oxygenase 1 inhibitor" RELATED [ChEBI] +synonym: "cyclo-oxygenase 1 inhibitors" RELATED [ChEBI] +synonym: "cyclooxygenase 1 inhibitors" RELATED [ChEBI] +synonym: "cyclooxygenase-1 inhibitor" RELATED [ChEBI] +synonym: "cyclooxygenase-1 inhibitors" RELATED [ChEBI] +synonym: "prostaglandin G/H synthase 1 inhibitor" RELATED [ChEBI] +synonym: "prostaglandin G/H synthase 1 inhibitors" RELATED [ChEBI] +synonym: "prostaglandin H2 synthase 1 inhibitor" RELATED [ChEBI] +synonym: "prostaglandin H2 synthase 1 inhibitors" RELATED [ChEBI] +synonym: "prostaglandin-endoperoxide synthase 1 inhibitor" RELATED [ChEBI] +synonym: "prostaglandin-endoperoxide synthase 1 inhibitors" RELATED [ChEBI] +synonym: "PTGS1 inhibitor" RELATED [ChEBI] +synonym: "PTGS1 inhibitors" RELATED [ChEBI] +xref: Wikipedia:PTGS1 +is_a: CHEBI:35544 ! EC 1.14.99.1 (prostaglandin-endoperoxide synthase) inhibitor + +[Term] +id: CHEBI:50658 +name: ampicillin(1-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "(2S,5R,6R)-6-{[(2R)-2-amino-2-phenylacetyl]amino}-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "348.102" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "348.39794" RELATED MASS [ChEBI] +synonym: "6beta-[(2R)-2-amino-2-phenylacetamido]-2,2-dimethylpenam-3alpha-carboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]12SC(C)(C)[C@@H](N1C(=O)[C@H]2NC(=O)[C@H](N)c1ccccc1)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "ampicillinate" RELATED [ChEBI] +synonym: "AVKUERGKIZMTKX-NJBDSQKTSA-M" RELATED InChIKey [ChEBI] +synonym: "C16H18N3O4S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C16H19N3O4S/c1-16(2)11(15(22)23)19-13(21)10(14(19)24-16)18-12(20)9(17)8-6-4-3-5-7-8/h3-7,9-11,14H,17H2,1-2H3,(H,18,20)(H,22,23)/p-1/t9-,10-,11+,14-/m1/s1" RELATED InChI [ChEBI] +is_a: CHEBI:51356 ! penicillinate anion +relationship: is_conjugate_base_of CHEBI:28971 ! ampicillin + +[Term] +id: CHEBI:50674 +name: chitobioses +namespace: chebi_ontology +def: "A family of compounds derived from chitin and based on the structure of D-glucosaminyl-(1->4)-D-glucosamine." [] +subset: 3_STAR +synonym: "2-amino-4-O-(2-amino-2-deoxy-beta-D-glucosyl)-2-deoxy-D-glucose" EXACT IUPAC_NAME [IUPAC] +synonym: "C12H24N2O9" RELATED FORMULA [ChEBI] +is_a: CHEBI:22480 ! amino disaccharide + +[Term] +id: CHEBI:50675 +name: beta-D-glucosaminyl-(1->4)-D-glucosamine +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-amino-4-O-(2-amino-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-D-glucopyranose" EXACT IUPAC_NAME [IUPAC] +synonym: "340.148" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "340.32704" RELATED MASS [ChEBI] +synonym: "C12H24N2O9" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C12H24N2O9/c13-5-9(19)10(4(2-16)21-11(5)20)23-12-6(14)8(18)7(17)3(1-15)22-12/h3-12,15-20H,1-2,13-14H2/t3-,4-,5-,6-,7-,8-,9-,10-,11?,12+/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@H]1C(O)O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2N)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "QLTSDROPCWIKKY-ZMYKSUFESA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1654149 "Beilstein" +is_a: CHEBI:50674 ! chitobioses + +[Term] +id: CHEBI:50684 +name: cross-linking reagent +namespace: chebi_ontology +def: "A reagent with two reactive groups, usually at opposite ends of the molecule, that are capable of reacting with and thereby forming bridges between macromolecules, principally side chains of amino acids in proteins, allowing the locations of naturally reactive areas within the proteins to be identified." [] +subset: 3_STAR +synonym: "cross-linking reagents" RELATED [ChEBI] +is_a: CHEBI:33893 ! reagent + +[Term] +id: CHEBI:50689 +name: reproductive control drug +namespace: chebi_ontology +def: "A substance used either in the prevention or facilitation of pregnancy." [] +subset: 3_STAR +synonym: "reproductive control agent" RELATED [ChEBI] +synonym: "reproductive control drugs" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:50699 +name: oligosaccharide +namespace: chebi_ontology +alt_id: CHEBI:25679 +alt_id: CHEBI:35319 +alt_id: CHEBI:7758 +def: "A compound in which monosaccharide units are joined by glycosidic linkages. The term is commonly used to refer to a defined structure as opposed to a polymer of unspecified length or a homologous mixture. When the linkages are of other types the compounds are regarded as oligosaccharide analogues." [] +subset: 3_STAR +synonym: "an oligosaccharide" RELATED [UniProt] +synonym: "O-glycosylglycoside" RELATED [ChEBI] +synonym: "O-glycosylglycosides" RELATED [ChEBI] +synonym: "oligosacarido" RELATED [ChEBI] +synonym: "oligosacaridos" RELATED [IUPAC] +synonym: "Oligosaccharide" EXACT [KEGG_COMPOUND] +synonym: "oligosaccharides" EXACT IUPAC_NAME [IUPAC] +xref: KEGG:C00930 +is_a: CHEBI:16646 ! carbohydrate + +[Term] +id: CHEBI:50733 +name: nutraceutical +namespace: chebi_ontology +def: "A product in capsule, tablet or liquid form that provide essential nutrients, such as a vitamin, an essential mineral, a protein, an herb, or similar nutritional substance." [] +subset: 3_STAR +synonym: "Dietary Supplement" RELATED [ChEBI] +synonym: "Food Supplementation" RELATED [ChEBI] +synonym: "Nutritional supplement" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:50745 +name: progestogen +namespace: chebi_ontology +def: "A compound that interacts with progesterone receptors in target tissues to bring about effects similar to those of progesterone." [] +subset: 3_STAR +synonym: "gestagen" RELATED [ChEBI] +synonym: "gestagens" RELATED [ChEBI] +synonym: "progestagen" RELATED [ChEBI] +synonym: "progestagens" RELATED [ChEBI] +synonym: "progestogens" RELATED [ChEBI] +is_a: CHEBI:50112 ! sex hormone + +[Term] +id: CHEBI:50750 +name: EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitor +namespace: chebi_ontology +alt_id: CHEBI:132229 +alt_id: CHEBI:50234 +def: "A topoisomerase inhibitor that inhibits DNA topoisomerase (ATP-hydrolysing), EC 5.99.1.3 (also known as topoisomerase II and as DNA gyrase), which catalyses ATP-dependent breakage of both strands of DNA, passage of the unbroken strands through the breaks, and rejoining of the broken strands." [] +subset: 3_STAR +synonym: "DNA gyrase inhibitor" RELATED [ChEBI] +synonym: "DNA gyrase inhibitors" RELATED [ChEBI] +synonym: "DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) inhibitor" RELATED [ChEBI] +synonym: "DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) inhibitors" RELATED [ChEBI] +synonym: "DNA topoisomerase (ATP-hydrolysing) inhibitor" RELATED [ChEBI] +synonym: "DNA topoisomerase (ATP-hydrolysing) inhibitors" RELATED [ChEBI] +synonym: "DNA topoisomerase II inhibitor" RELATED [ChEBI] +synonym: "DNA topoisomerase II inhibitors" RELATED [ChEBI] +synonym: "EC 5.99.1.3 (DNA topoisomerase (ATP-hydrolysing)) inhibitor" RELATED [ChEBI] +synonym: "EC 5.99.1.3 (DNA topoisomerase (ATP-hydrolysing)) inhibitors" RELATED [ChEBI] +synonym: "EC 5.99.1.3 [DNA topoisomerase (ATP-hydrolysing)] inhibitors" RELATED [ChEBI] +synonym: "EC 5.99.1.3 inhibitor" RELATED [ChEBI] +synonym: "EC 5.99.1.3 inhibitors" RELATED [ChEBI] +synonym: "inhibitor of type II topoisomerase" RELATED [ChEBI] +synonym: "inhibitors of type II topoisomerase" RELATED [ChEBI] +synonym: "topoisomerase II inhibitor" RELATED [ChEBI] +synonym: "topoisomerase II inhibitors" RELATED [ChEBI] +synonym: "topoisomerase-II inhibitor" RELATED [ChEBI] +synonym: "topoisomerase-II inhibitors" RELATED [ChEBI] +synonym: "type II DNA topoisomerase inhibitor" RELATED [ChEBI] +synonym: "type II DNA topoisomerase inhibitors" RELATED [ChEBI] +is_a: CHEBI:70727 ! topoisomerase inhibitor + +[Term] +id: CHEBI:50795 +name: nanostructure +namespace: chebi_ontology +def: "A nanometre sized object." [] +subset: 3_STAR +synonym: "nanoestructura" RELATED [ChEBI] +is_a: CHEBI:36357 ! polyatomic entity + +[Term] +id: CHEBI:50803 +name: nanoparticle +namespace: chebi_ontology +def: "A nanosized spherical or capsule-shaped structure." [] +subset: 3_STAR +synonym: "nanoparticles" RELATED [ChEBI] +synonym: "nanoparticula" RELATED [ChEBI] +synonym: "nanoparticule" RELATED [ChEBI] +synonym: "Nanoteilchen" RELATED [ChEBI] +synonym: "NP" RELATED [ChEBI] +is_a: CHEBI:50795 ! nanostructure + +[Term] +id: CHEBI:50846 +name: immunomodulator +namespace: chebi_ontology +def: "Biologically active substance whose activity affects or plays a role in the functioning of the immune system." [] +subset: 3_STAR +synonym: "Biomodulator" RELATED [ChEBI] +synonym: "Immune factor" RELATED [ChEBI] +synonym: "Immunologic factor" RELATED [ChEBI] +synonym: "Immunological factor" RELATED [ChEBI] +synonym: "immunomodulators" RELATED [ChEBI] +xref: Wikipedia:Immunotherapy +is_a: CHEBI:23888 ! drug +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:50847 +name: immunological adjuvant +namespace: chebi_ontology +def: "A substance that augments, stimulates, activates, potentiates, or modulates the immune response at either the cellular or humoral level. A classical agent (Freund's adjuvant, BCG, Corynebacterium parvum, et al.) contains bacterial antigens. It could also be endogenous (e.g., histamine, interferon, transfer factor, tuftsin, interleukin-1). Its mode of action is either non-specific, resulting in increased immune responsiveness to a wide variety of antigens, or antigen-specific, i.e., affecting a restricted type of immune response to a narrow group of antigens. The therapeutic efficacy is related to its antigen-specific immunoadjuvanticity." [] +subset: 3_STAR +synonym: "Immunoactivator" RELATED [ChEBI] +synonym: "Immunoadjuvant" RELATED [ChEBI] +synonym: "Immunologic adjuvant" RELATED [ChEBI] +synonym: "Immunopotentiator" RELATED [ChEBI] +synonym: "Immunostimulant" RELATED [ChEBI] +xref: Wikipedia:Immunologic_adjuvant +is_a: CHEBI:50846 ! immunomodulator +is_a: CHEBI:60809 ! adjuvant + +[Term] +id: CHEBI:50857 +name: anti-allergic agent +namespace: chebi_ontology +def: "A drug used to treat allergic reactions." [] +subset: 3_STAR +synonym: "anti-allergic agents" RELATED [ChEBI] +synonym: "anti-allergic drug" RELATED [ChEBI] +synonym: "anti-allergic drugs" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:50858 +name: corticosteroid +namespace: chebi_ontology +def: "A natural or synthetic analogue of the hormones secreted by the adrenal gland." [] +subset: 3_STAR +synonym: "corticoides" RELATED [ChEBI] +synonym: "corticosteroides" RELATED [ChEBI] +synonym: "corticosteroids" RELATED [ChEBI] +is_a: CHEBI:35341 ! steroid + +[Term] +id: CHEBI:50860 +name: organic molecular entity +namespace: chebi_ontology +alt_id: CHEBI:25700 +alt_id: CHEBI:33244 +def: "Any molecular entity that contains carbon." [] +subset: 3_STAR +synonym: "organic compounds" RELATED [ChEBI] +synonym: "organic entity" RELATED [ChEBI] +synonym: "organic molecular entities" RELATED [ChEBI] +is_a: CHEBI:33582 ! carbon group molecular entity +relationship: has_part CHEBI:27594 ! carbon atom +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:50893 +name: azaarene +namespace: chebi_ontology +subset: 3_STAR +synonym: "azaarenes" RELATED [ChEBI] +is_a: CHEBI:33833 ! heteroarene +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound + +[Term] +id: CHEBI:50902 +name: genotoxin +namespace: chebi_ontology +def: "A role played by a chemical compound to induce direct or indirect DNA damage. Such damage can potentially lead to the formation of a malignant tumour, but DNA damage does not lead inevitably to the creation of cancerous cells." [] +subset: 3_STAR +synonym: "genotoxic agent" RELATED [ChEBI] +synonym: "genotoxic agents" RELATED [ChEBI] +synonym: "genotoxins" RELATED [ChEBI] +xref: Wikipedia:Genotoxicity +is_a: CHEBI:52209 ! aetiopathogenetic role + +[Term] +id: CHEBI:50903 +name: carcinogenic agent +namespace: chebi_ontology +def: "A role played by a chemical compound which is known to induce a process of carcinogenesis by corrupting normal cellular pathways, leading to the acquistion of tumoral capabilities." [] +subset: 3_STAR +synonym: "agente carcinogeno" RELATED [ChEBI] +synonym: "cancerigene" RELATED [ChEBI] +synonym: "cancerogene" RELATED [ChEBI] +synonym: "carcinogen" RELATED [ChEBI] +synonym: "carcinogene" RELATED [ChEBI] +synonym: "carcinogenic agents" RELATED [ChEBI] +synonym: "carcinogeno" RELATED [ChEBI] +synonym: "carcinogens" RELATED [ChEBI] +is_a: CHEBI:52209 ! aetiopathogenetic role + +[Term] +id: CHEBI:50904 +name: allergen +namespace: chebi_ontology +def: "A chemical compound which causes the onset of an allergic reaction by interacting with any of the molecular pathways involved in an allergy." [] +subset: 3_STAR +synonym: "alergeno" RELATED [ChEBI] +synonym: "allergene" RELATED [ChEBI] +synonym: "allergenic agent" RELATED [ChEBI] +xref: Wikipedia:Allergen +is_a: CHEBI:52209 ! aetiopathogenetic role + +[Term] +id: CHEBI:50905 +name: teratogenic agent +namespace: chebi_ontology +def: "A role played by a chemical compound in biological systems with adverse consequences in embryo developments, leading to birth defects, embryo death or altered development, growth retardation and functional defect." [] +subset: 3_STAR +synonym: "agent teratogene" RELATED [ChEBI] +synonym: "teratogen" RELATED [ChEBI] +synonym: "teratogeno" RELATED [ChEBI] +is_a: CHEBI:52209 ! aetiopathogenetic role + +[Term] +id: CHEBI:50906 +name: role +namespace: chebi_ontology +def: "A role is particular behaviour which a material entity may exhibit." [] +subset: 3_STAR +is_a: BFO:0000017 ! realizable entity + +[Term] +id: CHEBI:50908 +name: hepatotoxic agent +namespace: chebi_ontology +def: "A role played by a chemical compound exihibiting itself through the ability to induce damage to the liver in animals." [] +subset: 3_STAR +synonym: "agente hepatotoxico" RELATED [ChEBI] +synonym: "hepatotoxicant" RELATED [ChEBI] +synonym: "hepatoxic agent" RELATED [ChEBI] +synonym: "hepatoxicant" RELATED [ChEBI] +is_a: CHEBI:52209 ! aetiopathogenetic role + +[Term] +id: CHEBI:50910 +name: neurotoxin +namespace: chebi_ontology +alt_id: CHEBI:50911 +def: "A poison that interferes with the functions of the nervous system." [] +subset: 3_STAR +synonym: "agente neurotoxico" RELATED [ChEBI] +synonym: "nerve poison" RELATED [ChEBI] +synonym: "nerve poisons" RELATED [ChEBI] +synonym: "neurotoxic agent" RELATED [ChEBI] +synonym: "neurotoxic agents" RELATED [ChEBI] +synonym: "neurotoxicant" RELATED [ChEBI] +synonym: "neurotoxins" RELATED [ChEBI] +xref: Wikipedia:Neurotoxin +is_a: CHEBI:52209 ! aetiopathogenetic role +is_a: CHEBI:64909 ! poison + +[Term] +id: CHEBI:50916 +name: lipid kinase inhibitor +namespace: chebi_ontology +def: "An EC 2.7.* (P-containing group transferase) inhibitor that interferes with the action of lipid kinases." [] +subset: 3_STAR +synonym: "lipid kinase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76668 ! EC 2.7.* (P-containing group transferase) inhibitor + +[Term] +id: CHEBI:50919 +name: antiemetic +namespace: chebi_ontology +def: "A drug used to prevent nausea or vomiting. An antiemetic may act by a wide range of mechanisms: it might affect the medullary control centres (the vomiting centre and the chemoreceptive trigger zone) or affect the peripheral receptors." [] +subset: 3_STAR +synonym: "anti-emetic" RELATED [ChEBI] +synonym: "anti-emetics" RELATED [ChEBI] +synonym: "antiemetico" RELATED [ChEBI] +synonym: "antiemetics" RELATED [ChEBI] +xref: Wikipedia:Antiemetic +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:50926 +name: angiogenesis modulating agent +namespace: chebi_ontology +def: "An agent that modulates the physiologic angiogenesis process. This is accomplished by endogenous angiogenic proteins and a variety of other chemicals and pharmaceutical agents." [] +subset: 3_STAR +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:50994 +name: primary amino compound +namespace: chebi_ontology +def: "A compound formally derived from ammonia by replacing one hydrogen atom by an organyl group." [] +subset: 3_STAR +synonym: "primary amino compounds" RELATED [ChEBI] +is_a: CHEBI:50047 ! organic amino compound + +[Term] +id: CHEBI:50995 +name: secondary amino compound +namespace: chebi_ontology +def: "A compound formally derived from ammonia by replacing two hydrogen atoms by organyl groups." [] +subset: 3_STAR +synonym: "secondary amino compounds" RELATED [ChEBI] +is_a: CHEBI:50047 ! organic amino compound + +[Term] +id: CHEBI:50996 +name: tertiary amino compound +namespace: chebi_ontology +def: "A compound formally derived from ammonia by replacing three hydrogen atoms by organyl groups." [] +subset: 3_STAR +synonym: "tertiary amino compounds" RELATED [ChEBI] +is_a: CHEBI:50047 ! organic amino compound + +[Term] +id: CHEBI:51026 +name: macrocycle +namespace: chebi_ontology +def: "A cyclic compound containing nine or more atoms as part of the cyclic system." [] +subset: 3_STAR +synonym: "macrocycle" EXACT IUPAC_NAME [IUPAC] +synonym: "macrocycles" RELATED [ChEBI] +synonym: "Makrocyclen" RELATED [ChEBI] +synonym: "makrocyclische Verbindungen" RELATED [ChEBI] +synonym: "Makrozyklen" RELATED [ChEBI] +synonym: "makrozyklische Verbindungen" RELATED [ChEBI] +xref: Wikipedia:Macrocycle +is_a: CHEBI:33595 ! cyclic compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:51050 +name: titanium dioxide nanoparticle +namespace: chebi_ontology +def: "A nanoparticle consisting of titanium dioxide." [] +subset: 3_STAR +synonym: "O2Ti" RELATED FORMULA [ChEBI] +synonym: "TiO2 nanoparticle" RELATED [ChEBI] +xref: colombos:NANOPARTICLES.TiO2 +is_a: CHEBI:134441 ! titanium oxide nanoparticle +is_a: CHEBI:32234 ! titanium dioxide + +[Term] +id: CHEBI:51057 +name: 3-phenylpropionate +namespace: chebi_ontology +alt_id: CHEBI:20186 +alt_id: CHEBI:20187 +def: "A monocarboxylic acid anion that is the conjugate base of 3-phenylpropionic acid, obtained by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "149.060" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "149.16656" RELATED MASS [ChEBI] +synonym: "3-phenyl propionate" RELATED [UM-BBD] +synonym: "3-phenylpropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "3-phenylpropanoate" RELATED [UniProt] +synonym: "[O-]C(=O)CCc1ccccc1" RELATED SMILES [ChEBI] +synonym: "C9H9O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C9H10O2/c10-9(11)7-6-8-4-2-1-3-5-8/h1-5H,6-7H2,(H,10,11)/p-1" RELATED InChI [ChEBI] +synonym: "XMIIGOLPHOKFCH-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:4670367 "Beilstein" +xref: Gmelin:328656 "Gmelin" +xref: HMDB:HMDB00764 +xref: MetaCyc:3-PHENYLPROPIONATE +xref: Reaxys:4670367 "Reaxys" +xref: UM-BBD_compID:c0422 "UM-BBD" +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:28631 ! 3-phenylpropionic acid + +[Term] +id: CHEBI:51060 +name: hormone agonist +namespace: chebi_ontology +def: "A chemical substance which binds to specific hormone receptors activating the function of the endocrine glands, the biosynthesis of their secreted hormones, or the action of hormones upon their specific sites." [] +subset: 3_STAR +is_a: CHEBI:48705 ! agonist +is_a: CHEBI:51061 ! hormone receptor modulator + +[Term] +id: CHEBI:51061 +name: hormone receptor modulator +namespace: chebi_ontology +def: "A drug that modulates the function of the endocrine glands, the biosynthesis of their secreted hormones, or the action of hormones upon their specific sites." [] +subset: 3_STAR +synonym: "hormone receptor modulators" RELATED [ChEBI] +is_a: CHEBI:90710 ! receptor modulator + +[Term] +id: CHEBI:51069 +name: organic halide salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic halide salts" RELATED [ChEBI] +is_a: CHEBI:24868 ! organic salt + +[Term] +id: CHEBI:51082 +name: nitrate salt +namespace: chebi_ontology +subset: 1_STAR +synonym: "nitrate salts" RELATED [ChEBI] +is_a: CHEBI:24866 ! salt +relationship: has_part CHEBI:17632 ! nitrate + +[Term] +id: CHEBI:51084 +name: inorganic nitrate salt +namespace: chebi_ontology +subset: 3_STAR +synonym: "inorganic nitrate salts" RELATED [ChEBI] +synonym: "inorganic nitrates" RELATED [ChEBI] +is_a: CHEBI:51082 ! nitrate salt + +[Term] +id: CHEBI:51086 +name: chemical role +namespace: chebi_ontology +def: "A role played by the molecular entity or part thereof within a chemical context." [] +subset: 3_STAR +is_a: CHEBI:50906 ! role + +[Term] +id: CHEBI:51121 +name: fluorescent dye +namespace: chebi_ontology +subset: 3_STAR +synonym: "fluorescent dyes" RELATED [ChEBI] +is_a: CHEBI:37958 ! dye + +[Term] +id: CHEBI:51143 +name: nitrogen molecular entity +namespace: chebi_ontology +alt_id: CHEBI:25556 +alt_id: CHEBI:7594 +subset: 3_STAR +synonym: "nitrogen compounds" RELATED [ChEBI] +synonym: "nitrogen molecular entities" RELATED [ChEBI] +synonym: "Nitrogenous compounds" RELATED [KEGG_COMPOUND] +xref: KEGG:C06061 +is_a: CHEBI:33302 ! pnictogen molecular entity +relationship: has_part CHEBI:25555 ! nitrogen atom +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:51144 +name: nitrogen group +namespace: chebi_ontology +subset: 3_STAR +synonym: "nitrogen group" EXACT [ChEBI] +synonym: "nitrogen groups" RELATED [ChEBI] +synonym: "nitrogen-containing group" RELATED [ChEBI] +synonym: "nitrogenous group" RELATED [ChEBI] +is_a: CHEBI:24433 ! group + +[Term] +id: CHEBI:51151 +name: dipolar compound +namespace: chebi_ontology +def: "An organic molecule that is electrically neutral carrying a positive and a negative charge in one of its major canonical descriptions. In most dipolar compounds the charges are delocalized; however the term is also applied to species where this is not the case." [] +subset: 3_STAR +synonym: "dipolar compounds" RELATED [ChEBI] +is_a: CHEBI:72695 ! organic molecule + +[Term] +id: CHEBI:51208 +name: mecillinam +namespace: chebi_ontology +subset: 3_STAR +synonym: "(2S,5R,6R)-6-[(azepan-1-ylmethylidene)amino]-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid" RELATED [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "325.146" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "325.42754" RELATED MASS [ChEBI] +synonym: "6beta-[(azepan-1-ylmethylidene)amino]-2,2-dimethylpenam-3alpha-carboxylic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "[H]C(=N[C@@H]1C(=O)N2[C@@H](C(O)=O)C(C)(C)S[C@]12[H])N1CCCCCC1" RELATED SMILES [ChEBI] +synonym: "amdinocillin" RELATED [ChemIDplus] +synonym: "BWWVAEOLVKTZFQ-NTZNESFSSA-N" RELATED InChIKey [ChEBI] +synonym: "C15H23N3O3S" RELATED FORMULA [ChEBI] +synonym: "Coactin" RELATED BRAND_NAME [DrugBank] +synonym: "InChI=1S/C15H23N3O3S/c1-15(2)11(14(20)21)18-12(19)10(13(18)22-15)16-9-17-7-5-3-4-6-8-17/h9-11,13H,3-8H2,1-2H3,(H,20,21)/t10-,11+,13-/m1/s1" RELATED InChI [ChEBI] +synonym: "mecilinamo" RELATED INN [ChemIDplus] +synonym: "mecillinam" RELATED INN [ChemIDplus] +synonym: "mecillinamum" RELATED INN [ChemIDplus] +synonym: "penicillin HX" RELATED [ChemIDplus] +xref: Beilstein:1223657 "Beilstein" +xref: CAS:32887-01-7 "ChemIDplus" +xref: colombos:MECILLINAM +xref: DrugBank:DB01163 +xref: LINCS:LSM-5528 +xref: Patent:DE2055531 +xref: Patent:US3957764 +is_a: CHEBI:17334 ! penicillin +relationship: has_role CHEBI:36047 ! antibacterial drug + +[Term] +id: CHEBI:51214 +name: diamminedichloroplatinum +namespace: chebi_ontology +subset: 3_STAR +synonym: "Cl2H6N2Pt" RELATED FORMULA [ChEBI] +synonym: "diammine(dichloro)platinum" RELATED [ChEBI] +synonym: "diamminedichloridoplatinum" EXACT IUPAC_NAME [IUPAC] +synonym: "diamminedichloridoplatinum(II)" EXACT IUPAC_NAME [IUPAC] +synonym: "diamminedichloroplatinum" EXACT IUPAC_NAME [IUPAC] +synonym: "diamminedichloroplatinum(II)" EXACT IUPAC_NAME [IUPAC] +synonym: "diammineplatinum dichloride" RELATED [NIST_Chemistry_WebBook] +xref: CAS:14913-33-8 "NIST Chemistry WebBook" +xref: Gmelin:101110 "Gmelin" +is_a: CHEBI:33862 ! platinum coordination entity + +[Term] +id: CHEBI:51217 +name: fluorochrome +namespace: chebi_ontology +def: "A fluorescent dye used to stain biological specimens." [] +subset: 3_STAR +synonym: "fluorochromes" RELATED [ChEBI] +is_a: CHEBI:51121 ! fluorescent dye + +[Term] +id: CHEBI:51245 +name: phenanthridines +namespace: chebi_ontology +def: "Any dibenzopyridine based on the skeleton of phenanthridine and its substituted derivatives thereof." [] +subset: 3_STAR +is_a: CHEBI:39206 ! dibenzopyridine + +[Term] +id: CHEBI:51256 +name: amoxicillin(1-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "(2S,5R,6R)-6-{[(2R)-2-amino-2-(4-hydroxyphenyl)acetyl]amino}-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "364.097" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "364.39734" RELATED MASS [ChEBI] +synonym: "6beta-[(2R)-2-amino-2-(4-hydroxyphenyl)acetamido]-2,2-dimethylpenam-3alpha-carboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]12SC(C)(C)[C@@H](N1C(=O)[C@H]2NC(=O)[C@H](N)c1ccc(O)cc1)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C16H18N3O5S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C16H19N3O5S/c1-16(2)11(15(23)24)19-13(22)10(14(19)25-16)18-12(21)9(17)7-3-5-8(20)6-4-7/h3-6,9-11,14,20H,17H2,1-2H3,(H,18,21)(H,23,24)/p-1/t9-,10-,11+,14-/m1/s1" RELATED InChI [ChEBI] +synonym: "LSQZJLSUYDQPKJ-NJBDSQKTSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:6077298 "Beilstein" +is_a: CHEBI:51356 ! penicillinate anion +relationship: is_conjugate_base_of CHEBI:2676 ! amoxicillin + +[Term] +id: CHEBI:51269 +name: acenes +namespace: chebi_ontology +def: "Polycyclic aromatic hydrocarbons consisting of fused benzene rings in a rectilinear arrangement and their substitution derivatives." [] +subset: 3_STAR +is_a: CHEBI:33836 ! benzenoid aromatic compound + +[Term] +id: CHEBI:51270 +name: tetracenes +namespace: chebi_ontology +def: "Compounds containing a tetracene skeleton." [] +subset: 3_STAR +synonym: "naphthacenes" RELATED [ChEBI] +is_a: CHEBI:51269 ! acenes + +[Term] +id: CHEBI:51277 +name: thioester +namespace: chebi_ontology +def: "A compound of general formula RC(=O)SR'. Compare with thionoester, RC(=S)OR'." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "59.967" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "60.07500" RELATED MASS [ChEBI] +synonym: "[*]C(=O)S[*]" RELATED SMILES [ChEBI] +synonym: "COSR2" RELATED FORMULA [ChEBI] +synonym: "thio ester" RELATED [ChEBI] +synonym: "thioesters" RELATED [ChEBI] +synonym: "thiol ester" RELATED [ChEBI] +is_a: CHEBI:26959 ! thiocarboxylic ester +is_a: CHEBI:36586 ! carbonyl compound + +[Term] +id: CHEBI:51308 +name: dinitrile +namespace: chebi_ontology +def: "A dinitrile is a compound containing two nitrile groups." [] +subset: 3_STAR +synonym: "dinitrile" EXACT [ChEBI] +synonym: "dinitriles" RELATED [ChEBI] +is_a: CHEBI:18379 ! nitrile + +[Term] +id: CHEBI:51336 +name: metal sulfate +namespace: chebi_ontology +def: "Sulfate salts where the cation is a metal ion." [] +subset: 3_STAR +synonym: "metal sulfates" RELATED [ChEBI] +is_a: CHEBI:24840 ! inorganic sulfate salt + +[Term] +id: CHEBI:51354 +name: benzylpenicillin(1-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "(2S,5R,6R)-3,3-dimethyl-7-oxo-6-[(phenylacetyl)amino]-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "2,2-dimethyl-6beta-(phenylacetamido)penam-3alpha-carboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "333.091" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "333.38326" RELATED MASS [ChEBI] +synonym: "[H][C@]12SC(C)(C)[C@@H](N1C(=O)[C@H]2NC(=O)Cc1ccccc1)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C16H17N2O4S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C16H18N2O4S/c1-16(2)12(15(21)22)18-13(20)11(14(18)23-16)17-10(19)8-9-6-4-3-5-7-9/h3-7,11-12,14H,8H2,1-2H3,(H,17,19)(H,21,22)/p-1/t11-,12+,14-/m1/s1" RELATED InChI [ChEBI] +synonym: "JGSARLDLIJGVTE-MBNYWOFBSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3915298 "Beilstein" +is_a: CHEBI:51356 ! penicillinate anion +relationship: is_conjugate_base_of CHEBI:18208 ! benzylpenicillin + +[Term] +id: CHEBI:51356 +name: penicillinate anion +namespace: chebi_ontology +alt_id: CHEBI:58108 +def: "Any anion formed by loss of a proton from the carboxy group of a penicillin." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "242.036" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "242.25200" RELATED MASS [ChEBI] +synonym: "[H][C@]12SC(C)(C)[C@@H](N1C(=O)[C@H]2NC([*])=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C9H10N2O4SR" RELATED FORMULA [ChEBI] +synonym: "penicillin" RELATED [UniProt] +synonym: "penicillin anion" RELATED [ChEBI] +synonym: "penicillin anions" RELATED [ChEBI] +is_a: CHEBI:47811 ! penamcarboxylate +relationship: is_conjugate_base_of CHEBI:17334 ! penicillin + +[Term] +id: CHEBI:51373 +name: GABA agonist +namespace: chebi_ontology +def: "A drug that binds to and activates gamma-aminobutyric acid receptors." [] +subset: 3_STAR +is_a: CHEBI:51374 ! GABA agent + +[Term] +id: CHEBI:51374 +name: GABA agent +namespace: chebi_ontology +def: "A substance, such as agonists, antagonists, degradation or uptake inhibitors, depleters, precursors, and modulators of receptor function, used for its pharmacological actions on GABAergic systems." [] +subset: 3_STAR +is_a: CHEBI:35942 ! neurotransmitter agent + +[Term] +id: CHEBI:51384 +name: D-ascorbic acid +namespace: chebi_ontology +subset: 3_STAR +synonym: "(5S)-5-[(1R)-1,2-dihydroxyethyl]-3,4-dihydroxyfuran-2(5H)-one" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "176.032" RELATED MONOISOTOPIC_MASS [ChemIDplus] +synonym: "176.12412" RELATED MASS [ChEBI] +synonym: "[H][C@]1(OC(=O)C(O)=C1O)[C@H](O)CO" RELATED SMILES [ChEBI] +synonym: "C6H8O6" RELATED FORMULA [ChemIDplus] +synonym: "CIWBSHSKHKDKBQ-MVHIGOERSA-N" RELATED InChIKey [ChEBI] +synonym: "D-lyxoascorbic acid" RELATED [ChEBI] +synonym: "D-threo-hex-2-enoic acid gamma-lactone" RELATED [ChEBI] +synonym: "D-threo-hex-2-enono-1,4-lactone" EXACT IUPAC_NAME [IUPAC] +synonym: "D-xyloascorbic acid" RELATED [ChEBI] +synonym: "InChI=1S/C6H8O6/c7-1-2(8)5-3(9)4(10)6(11)12-5/h2,5,7-10H,1H2/t2-,5+/m1/s1" RELATED InChI [ChEBI] +xref: Beilstein:84273 "Beilstein" +xref: CAS:10504-35-5 "ChemIDplus" +is_a: CHEBI:22652 ! ascorbic acid +relationship: is_enantiomer_of CHEBI:29073 ! L-ascorbic acid + +[Term] +id: CHEBI:51422 +name: organodiyl group +namespace: chebi_ontology +def: "Any organic substituent group, regardless of functional type, having two free valences at carbon atom(s)." [] +subset: 3_STAR +synonym: "organodiyl groups" RELATED [ChEBI] +is_a: CHEBI:51446 ! organic divalent group + +[Term] +id: CHEBI:51446 +name: organic divalent group +namespace: chebi_ontology +subset: 1_STAR +is_a: CHEBI:33247 ! organic group + +[Term] +id: CHEBI:51447 +name: organic univalent group +namespace: chebi_ontology +subset: 1_STAR +synonym: "organic monovalent group" RELATED [ChEBI] +is_a: CHEBI:33247 ! organic group + +[Term] +id: CHEBI:51454 +name: cyclopropanes +namespace: chebi_ontology +def: "Cyclopropane and its derivatives formed by substitution." [] +subset: 3_STAR +is_a: CHEBI:33598 ! carbocyclic compound + +[Term] +id: CHEBI:51569 +name: N-acyl-amino acid +namespace: chebi_ontology +alt_id: CHEBI:21653 +alt_id: CHEBI:22226 +def: "A carboxamide resulting from the formal condensation of a carboxylic acid with the amino group of an amino acid." [] +subset: 3_STAR +synonym: "acyl-amino-acid" RELATED [ChEBI] +synonym: "acyl-amino-acids" RELATED [ChEBI] +synonym: "acylamino acids" RELATED [ChEBI] +synonym: "N-acyl amino acid" RELATED [ChEBI] +synonym: "N-acyl amino acids" RELATED [ChEBI] +synonym: "N-acyl-amino-acid" RELATED [ChEBI] +synonym: "N-acyl-amino-acids" RELATED [ChEBI] +synonym: "N-acylamino acid" RELATED [ChEBI] +synonym: "N-acylamino acids" RELATED [ChEBI] +is_a: CHEBI:33575 ! carboxylic acid +is_a: CHEBI:37622 ! carboxamide +is_a: CHEBI:83821 ! amino acid derivative +relationship: has_functional_parent CHEBI:33709 ! amino acid + +[Term] +id: CHEBI:51570 +name: biotins +namespace: chebi_ontology +def: "Compounds containing a biotin (5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid) skeleton." [] +subset: 3_STAR +is_a: CHEBI:25384 ! monocarboxylic acid +is_a: CHEBI:38295 ! azabicycloalkane +is_a: CHEBI:38297 ! thiabicycloalkane +is_a: CHEBI:47857 ! ureas + +[Term] +id: CHEBI:51650 +name: diphosphanes +namespace: chebi_ontology +def: "Compounds containing two phosphane groups linked directly by a P-P bond or via a hydrocarbon bridge." [] +subset: 3_STAR +synonym: "diphosphines" RELATED [ChEBI] +is_a: CHEBI:35878 ! phosphanes + +[Term] +id: CHEBI:51689 +name: enone +namespace: chebi_ontology +def: "An alpha,beta-unsaturated ketone of general formula R(1)R(2)C=CR(3)-C(=O)R(4) (R(4) =/= H) in which the C=O function is conjugated to a C=C double bond at the alpha,beta position." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "51.995" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "52.03150" RELATED MASS [ChEBI] +synonym: "[*]\\C([*])=C(\\[*])C([*])=O" RELATED SMILES [ChEBI] +synonym: "C3OR4" RELATED FORMULA [ChEBI] +synonym: "enones" RELATED [ChEBI] +xref: Wikipedia:Enone +is_a: CHEBI:51721 ! alpha,beta-unsaturated ketone +is_a: CHEBI:78840 ! olefinic compound + +[Term] +id: CHEBI:51721 +name: alpha,beta-unsaturated ketone +namespace: chebi_ontology +def: "A ketone of general formula R(1)R(2)C=CR(3)-C(=O)R(4) (R(4) =/= H) or R(1)C#C-C(=O)R(2) (R(2) =/= H) in which the ketonic C=O function is conjugated to an unsaturated C-C bond at the alpha,beta position." [] +subset: 3_STAR +synonym: "alpha,beta-unsaturated ketones" RELATED [ChEBI] +is_a: CHEBI:17087 ! ketone + +[Term] +id: CHEBI:51803 +name: aminoacridines +namespace: chebi_ontology +def: "Acridines which are substituted in any position by one or more amino groups or substituted amino groups. Note that the term 'aminoacridine' is the International Prorietary Name (INN) for 9-aminoacridine." [] +subset: 3_STAR +synonym: "aminoacridine" RELATED [ChEBI] +is_a: CHEBI:22213 ! acridines + +[Term] +id: CHEBI:51851 +name: ketonitrile +namespace: chebi_ontology +def: "A compound containing both ketone and nitrile functionalities." [] +subset: 3_STAR +synonym: "ketonitriles" RELATED [ChEBI] +is_a: CHEBI:17087 ! ketone +is_a: CHEBI:18379 ! nitrile + +[Term] +id: CHEBI:51852 +name: alpha-ketonitrile +namespace: chebi_ontology +def: "A ketonitrile where the ketone and nitrile functionalities are on adjacent atoms." [] +subset: 3_STAR +synonym: "alpha-ketonitriles" RELATED [ChEBI] +is_a: CHEBI:51851 ! ketonitrile + +[Term] +id: CHEBI:51863 +name: azlocillin(1-) +namespace: chebi_ontology +subset: 3_STAR +synonym: "(2S,5R,6R)-3,3-dimethyl-7-oxo-6-{[(2R)-2-{[(2-oxoimidazolidin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "2,2-dimethyl-6beta-[(2R)-2-{[(2-oxoimidazolidin-1-yl)carbonyl]amino}-2-phenylacetamido]penam-3alpha-carboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "460.129" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "460.48478" RELATED MASS [ChEBI] +synonym: "[H][C@]12SC(C)(C)[C@@H](N1C(=O)[C@H]2NC(=O)[C@]([H])(NC(=O)N1CCNC1=O)c1ccccc1)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C20H22N5O6S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C20H23N5O6S/c1-20(2)13(17(28)29)25-15(27)12(16(25)32-20)22-14(26)11(10-6-4-3-5-7-10)23-19(31)24-9-8-21-18(24)30/h3-7,11-13,16H,8-9H2,1-2H3,(H,21,30)(H,22,26)(H,23,31)(H,28,29)/p-1/t11-,12-,13+,16-/m1/s1" RELATED InChI [ChEBI] +synonym: "JTWOMNBEOCYFNV-NFFDBFGFSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:5683653 "Beilstein" +is_a: CHEBI:51356 ! penicillinate anion +relationship: is_conjugate_base_of CHEBI:2956 ! azlocillin + +[Term] +id: CHEBI:51958 +name: organic polycyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic polycyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33635 ! polycyclic compound +is_a: CHEBI:33832 ! organic cyclic compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:51959 +name: organic tricyclic compound +namespace: chebi_ontology +subset: 3_STAR +synonym: "organic tricyclic compounds" RELATED [ChEBI] +is_a: CHEBI:51958 ! organic polycyclic compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:5206 +name: GA +namespace: chebi_ontology +subset: 2_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "297.148" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "297.35178" RELATED MASS [ChEBI] +synonym: "4-[(aminoacetyl)amino]-N-(2,6-dimethylphenyl)benzamide" EXACT IUPAC_NAME [IUPAC] +synonym: "C17H19N3O2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Cc1cccc(C)c1NC(=O)c1ccc(NC(=O)CN)cc1" RELATED SMILES [ChEBI] +synonym: "GA" EXACT [KEGG_COMPOUND] +synonym: "InChI=1S/C17H19N3O2/c1-11-4-3-5-12(2)16(11)20-17(22)13-6-8-14(9-7-13)19-15(21)10-18/h3-9H,10,18H2,1-2H3,(H,19,21)(H,20,22)" RELATED InChI [ChEBI] +synonym: "NVVRHNPFZRQLSF-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: KEGG:C11484 +is_a: CHEBI:22702 ! benzamides + +[Term] +id: CHEBI:52090 +name: methoxide +namespace: chebi_ontology +def: "An organic anion that is the conjugate base of methanol." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "31.018" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "31.03390" RELATED MASS [ChEBI] +synonym: "C[O-]" RELATED SMILES [ChEBI] +synonym: "CH3O" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/CH3O/c1-2/h1H3/q-1" RELATED InChI [ChEBI] +synonym: "methoxide ion" RELATED [ChEBI] +synonym: "NBTOZLQBSIZIKS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Reaxys:1839368 "Reaxys" +is_a: CHEBI:25696 ! organic anion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:17790 ! methanol + +[Term] +id: CHEBI:52092 +name: ethoxide +namespace: chebi_ontology +def: "An organic anion that is the conjugate base of ethanol." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "45.034" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "45.06050" RELATED MASS [ChEBI] +synonym: "C2H5O" RELATED FORMULA [ChEBI] +synonym: "CC[O-]" RELATED SMILES [ChEBI] +synonym: "ethoxy anion" RELATED [ChEBI] +synonym: "HHFAWKCIHAUFRX-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C2H5O/c1-2-3/h2H2,1H3/q-1" RELATED InChI [ChEBI] +xref: Beilstein:1839415 "Beilstein" +xref: Reaxys:1839415 "Reaxys" +is_a: CHEBI:25696 ! organic anion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:16236 ! ethanol + +[Term] +id: CHEBI:52206 +name: biochemical role +namespace: chebi_ontology +def: "A biological role played by the molecular entity or part thereof within a biochemical context." [] +subset: 3_STAR +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:52208 +name: biophysical role +namespace: chebi_ontology +subset: 1_STAR +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:52209 +name: aetiopathogenetic role +namespace: chebi_ontology +def: "A role played by the molecular entity or part thereof which causes the development of a pathological process." [] +subset: 3_STAR +synonym: "etiopathogenetic agent" RELATED [ChEBI] +synonym: "etiopathogenetic role" RELATED [ChEBI] +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:52210 +name: pharmacological role +namespace: chebi_ontology +def: "A biological role which describes how a drug interacts within a biological system and how the interactions affect its medicinal properties." [] +subset: 3_STAR +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:52211 +name: physiological role +namespace: chebi_ontology +subset: 1_STAR +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:52214 +name: ligand +namespace: chebi_ontology +def: "Any molecule or ion capable of binding to a central metal atom to form coordination complexes." [] +subset: 3_STAR +synonym: "ligands" RELATED [ChEBI] +xref: Wikipedia:Ligand +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:52215 +name: photochemical role +namespace: chebi_ontology +def: "A chemical role played by the molecular entity or part thereof in a photochemical process." [] +subset: 3_STAR +synonym: "photochemical roles" RELATED [ChEBI] +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:52217 +name: pharmaceutical +namespace: chebi_ontology +alt_id: CHEBI:33293 +alt_id: CHEBI:33294 +def: "Any substance introduced into a living organism with therapeutic or diagnostic purpose." [] +subset: 3_STAR +synonym: "farmaco" RELATED [ChEBI] +synonym: "medicament" RELATED [ChEBI] +synonym: "pharmaceuticals" RELATED [ChEBI] +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:52267 +name: 7-hydroxyflavonol +namespace: chebi_ontology +def: "Any flavonol carrying a 7-hydroxy substituent." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "250.027" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "250.20570" RELATED MASS [ChEBI] +synonym: "7-hydroxy-flavonols" RELATED [ChEBI] +synonym: "C15H6O4R4" RELATED FORMULA [ChEBI] +synonym: "Oc1cc([*])c2c(c1)oc(-c1cc([*])c([*])c([*])c1)c(O)c2=O" RELATED SMILES [ChEBI] +is_a: CHEBI:28802 ! flavonols +relationship: is_conjugate_acid_of CHEBI:60090 ! 7-hydroxyflavon-3-olate + +[Term] +id: CHEBI:52362 +name: ortho-fused heteroarene +namespace: chebi_ontology +def: "An ortho-fused compound in which at least one of the rings contains at least one heteroatom." [] +subset: 3_STAR +synonym: "ortho-fused heteroarenes" RELATED [ChEBI] +is_a: CHEBI:33637 ! ortho-fused compound +is_a: CHEBI:38180 ! polycyclic heteroarene + +[Term] +id: CHEBI:52424 +name: EC 3.2.1.* (glycosidase) inhibitor +namespace: chebi_ontology +alt_id: CHEBI:76776 +def: "An EC 3.2.* (glycosylase) inhibitor that interferes with the action of any glycosidase (i.e. enzymes hydrolysing O- and S-glycosyl compounds, EC 3.2.1.*)." [] +subset: 3_STAR +synonym: "EC 3.2.1.* (glycosidase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.2.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.2.1.* inhibitors" RELATED [ChEBI] +synonym: "glycosidase (EC 3.2.1.*) inhibitor" RELATED [ChEBI] +synonym: "glycosidase (EC 3.2.1.*) inhibitors" RELATED [ChEBI] +synonym: "glycosidase inhibitor" RELATED [ChEBI] +synonym: "glycosidase inhibitors" RELATED [ChEBI] +synonym: "glycoside hydrolase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76761 ! EC 3.2.* (glycosylase) inhibitor + +[Term] +id: CHEBI:52425 +name: EC 3.2.1.18 (exo-alpha-sialidase) inhibitor +namespace: chebi_ontology +def: "An antiviral drug targeted at influenza viruses. Its mode of action consists of blocking the function of the viral neuraminidase protein (EC 3.2.1.18), thus preventing the virus from budding from the host cell." [] +subset: 3_STAR +synonym: "acetylneuraminidase inhibitor" RELATED [ChEBI] +synonym: "acetylneuraminidase inhibitors" RELATED [ChEBI] +synonym: "acetylneuraminyl hydrolase inhibitor" RELATED [ChEBI] +synonym: "acetylneuraminyl hydrolase inhibitors" RELATED [ChEBI] +synonym: "alpha-neuraminidase inhibitor" RELATED [ChEBI] +synonym: "alpha-neuraminidase inhibitors" RELATED [ChEBI] +synonym: "EC 3.2.1.18 (exo-alpha-sialidase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.2.1.18 inhibitor" RELATED [ChEBI] +synonym: "EC 3.2.1.18 inhibitors" RELATED [ChEBI] +synonym: "exo-alpha-sialidase (EC 3.2.1.18) inhibitor" RELATED [ChEBI] +synonym: "exo-alpha-sialidase (EC 3.2.1.18) inhibitors" RELATED [ChEBI] +synonym: "exo-alpha-sialidase inhibitor" RELATED [ChEBI] +synonym: "exo-alpha-sialidase inhibitors" RELATED [ChEBI] +synonym: "N-acylneuraminate glycohydrolase inhibitor" RELATED [ChEBI] +synonym: "N-acylneuraminate glycohydrolase inhibitors" RELATED [ChEBI] +synonym: "neuraminidase inhibitor" RELATED [ChEBI] +synonym: "neuraminidase inhibitors" RELATED [ChEBI] +synonym: "sialidase inhibitor" RELATED [ChEBI] +synonym: "sialidase inhibitors" RELATED [ChEBI] +is_a: CHEBI:36044 ! antiviral drug +is_a: CHEBI:52424 ! EC 3.2.1.* (glycosidase) inhibitor + +[Term] +id: CHEBI:52440 +name: cephalosporin carboxylic acid anion +namespace: chebi_ontology +subset: 3_STAR +synonym: "cephalosporin carboxylate" RELATED [ChEBI] +synonym: "cephalosporin carboxylates" RELATED [ChEBI] +synonym: "cephalosporin carboxylic acid anions" RELATED [ChEBI] +synonym: "cephalosporincarboxylate" RELATED [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion + +[Term] +id: CHEBI:52672 +name: rhodamine 6G +namespace: chebi_ontology +alt_id: CHEBI:49841 +alt_id: CHEBI:8829 +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-(6-(ethylamino)-3-(ethylimino)-2,7-dimethyl-3H-xanthen-9-yl)benzoic acid, ethyl ester, monohydrochloride" RELATED [ChemIDplus] +synonym: "478.202" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "478.202" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "479.01000" RELATED MASS [ChEBI] +synonym: "9-(2-(ethoxycarbonyl)phenyl)-3,6-bis(ethylamino)-2,7-dimethylxanthylium chloride" RELATED [ChemIDplus] +synonym: "9-[2-(ethoxycarbonyl)phenyl]-3,6-bis(ethylamino)-2,7-dimethylxanthenium chloride" EXACT IUPAC_NAME [IUPAC] +synonym: "[Cl-].CCNc1cc2[o+]c3cc(NCC)c(C)cc3c(-c3ccccc3C(=O)OCC)c2cc1C" RELATED SMILES [ChEBI] +synonym: "Basic Red 1" RELATED [ChEBI] +synonym: "C28H31ClN2O3" RELATED FORMULA [ChEBI] +synonym: "C28H31N2O3.Cl" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C28H31N2O3.ClH/c1-6-29-23-15-25-21(13-17(23)4)27(19-11-9-10-12-20(19)28(31)32-8-3)22-14-18(5)24(30-7-2)16-26(22)33-25;/h9-16,29-30H,6-8H2,1-5H3;1H/q+1;/p-1" RELATED InChI [ChEBI] +synonym: "R6G" RELATED [ChEBI] +synonym: "Rhodamine 6G" EXACT [KEGG_COMPOUND] +synonym: "XFKVYXCRNATCOO-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:3900071 "Beilstein" +xref: CAS:989-38-8 "ChemIDplus" +xref: DrugBank:DB03825 +xref: KEGG:C11177 +is_a: CHEBI:36094 ! organic chloride salt +is_a: CHEBI:52895 ! rhodamine 6G(1+) + +[Term] +id: CHEBI:52839 +name: acridinium ion +namespace: chebi_ontology +subset: 3_STAR +synonym: "acridinium ion" EXACT [ChEBI] +synonym: "acridinium ions" RELATED [ChEBI] +is_a: CHEBI:25697 ! organic cation + +[Term] +id: CHEBI:52855 +name: inorganic nanoparticle +namespace: chebi_ontology +def: "A nanoparticle that contains no carbon." [] +subset: 3_STAR +synonym: "inorganic nanoparticles" RELATED [ChEBI] +is_a: CHEBI:50803 ! nanoparticle + +[Term] +id: CHEBI:52895 +name: rhodamine 6G(1+) +namespace: chebi_ontology +def: "A cationic fluorescent dye derived from 9-phenylxanthene." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "443.233" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "443.55730" RELATED MASS [ChEBI] +synonym: "9-[2-(ethoxycarbonyl)phenyl]-3,6-bis(ethylamino)-2,7-dimethylxanthenium" EXACT IUPAC_NAME [IUPAC] +synonym: "BRIVWQJCHBUVLE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "C28H31N2O3" RELATED FORMULA [ChEBI] +synonym: "CCNc1cc2[o+]c3cc(NCC)c(C)cc3c(-c3ccccc3C(=O)OCC)c2cc1C" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C28H31N2O3/c1-6-29-23-15-25-21(13-17(23)4)27(19-11-9-10-12-20(19)28(31)32-8-3)22-14-18(5)24(30-7-2)16-26(22)33-25/h9-16,29-30H,6-8H2,1-5H3/q+1" RELATED InChI [ChEBI] +synonym: "rhodamine 6G cation" RELATED [ChEBI] +xref: CAS:47724-48-1 "ChemIDplus" +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:37929 ! xanthene dye +relationship: has_role CHEBI:51217 ! fluorochrome + +[Term] +id: CHEBI:53000 +name: epitope +namespace: chebi_ontology +def: "The biological role played by a material entity when bound by a receptor of the adaptive immune system. Specific site on an antigen to which an antibody binds." [] +subset: 3_STAR +synonym: "antigenic determinant" RELATED [ChEBI] +synonym: "epitope function" RELATED [ChEBI] +synonym: "epitope role" RELATED [ChEBI] +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:53258 +name: sodium citrate +namespace: chebi_ontology +def: "The trisodium salt of citric acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "257.973" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "258.06900" RELATED MASS [ChEBI] +synonym: "[Na+].[Na+].[Na+].OC(CC([O-])=O)(CC([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C6H5Na3O7" RELATED FORMULA [ChEBI] +synonym: "citric acid trisodium salt" RELATED [ChEBI] +synonym: "HRXKRNGNAMMEHJ-UHFFFAOYSA-K" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C6H8O7.3Na/c7-3(8)1-6(13,5(11)12)2-4(9)10;;;/h13H,1-2H2,(H,7,8)(H,9,10)(H,11,12);;;/q;3*+1/p-3" RELATED InChI [ChEBI] +synonym: "trisodium 2-hydroxypropane-1,2,3-tricarboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "trisodium citrate" RELATED [ChEBI] +xref: Reaxys:3920956 "Reaxys" +xref: Wikipedia:Trisodium_citrate +is_a: CHEBI:38700 ! organic sodium salt +relationship: has_part CHEBI:16947 ! citrate(3-) +relationship: has_role CHEBI:35617 ! flavouring agent +relationship: has_role CHEBI:50249 ! anticoagulant + +[Term] +id: CHEBI:53443 +name: salicylamides +namespace: chebi_ontology +subset: 3_STAR +is_a: CHEBI:22702 ! benzamides +relationship: has_functional_parent CHEBI:16914 ! salicylic acid + +[Term] +id: CHEBI:53468 +name: salicylanilides +namespace: chebi_ontology +def: "The compound salicylanilide and its derivatives." [] +subset: 3_STAR +is_a: CHEBI:13248 ! anilide +is_a: CHEBI:32114 ! salicylamide + +[Term] +id: CHEBI:53559 +name: topoisomerase IV inhibitor +namespace: chebi_ontology +def: "A topoisomerase inhibitor that inhibits DNA topoisomerase IV, which catalyses ATP-dependent breakage of both strands of DNA, passage of the unbroken strands through the breaks, and rejoining of the broken strands." [] +subset: 3_STAR +synonym: "topoisomerase IV inhibitors" RELATED [ChEBI] +is_a: CHEBI:70727 ! topoisomerase inhibitor + +[Term] +id: CHEBI:53670 +name: cefotaxime(1-) +namespace: chebi_ontology +def: "A cephalosporin carboxylic acid anion having acetoxymethyl and [2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino side-groups, formed by proton loss from the carboxy group of the cephalosporin cefotaxime." [] +subset: 3_STAR +synonym: "(6R,7R)-3-(acetoxymethyl)-7-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate" RELATED [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "3-(acetoxymethyl)-7beta-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-(methoxyimino)acetyl]amino}-3,4-didehydrocepham-4-carboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "454.049" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "454.45800" RELATED MASS [ChEBI] +synonym: "[H][C@]12SCC(COC(C)=O)=C(N1C(=O)[C@H]2NC(=O)C(=N/OC)\\c1csc(N)n1)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C16H16N5O7S2" RELATED FORMULA [ChEBI] +synonym: "GPRBEKHLDVQUJE-QSWIMTSFSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C16H17N5O7S2/c1-6(22)28-3-7-4-29-14-10(13(24)21(14)11(7)15(25)26)19-12(23)9(20-27-2)8-5-30-16(17)18-8/h5,10,14H,3-4H2,1-2H3,(H2,17,18)(H,19,23)(H,25,26)/p-1/b20-9-/t10-,14-/m1/s1" RELATED InChI [ChEBI] +xref: Beilstein:8174207 "Beilstein" +xref: Gmelin:1794119 "Gmelin" +xref: Reaxys:8174207 "Reaxys" +is_a: CHEBI:52440 ! cephalosporin carboxylic acid anion +relationship: is_conjugate_base_of CHEBI:204928 ! cefotaxime + +[Term] +id: CHEBI:5417 +name: glucosamine +namespace: chebi_ontology +subset: 3_STAR +synonym: "2-Amino-2-deoxy-glucose" RELATED [KEGG_COMPOUND] +synonym: "2-amino-2-deoxyglucose" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H13NO5" RELATED FORMULA [ChEBI] +synonym: "GlcN" RELATED [JCBN] +synonym: "Glucosamin" RELATED [ChEBI] +synonym: "Glucosamine" EXACT [KEGG_COMPOUND] +synonym: "glucosamine" EXACT IUPAC_NAME [IUPAC] +synonym: "Glukosamin" RELATED [ChEBI] +xref: DrugBank:DB01296 +xref: KEGG:C01811 +is_a: CHEBI:24271 ! glucosamines + +[Term] +id: CHEBI:55323 +name: antidiarrhoeal drug +namespace: chebi_ontology +def: "Any drug found useful in the symptomatic treatment of diarrhoea." [] +subset: 3_STAR +synonym: "antidiarrheal" RELATED [ChEBI] +synonym: "antidiarrheal agent" RELATED [ChEBI] +synonym: "antidiarrheal agents" RELATED [ChEBI] +synonym: "antidiarrheal drug" RELATED [ChEBI] +synonym: "antidiarrheal drugs" RELATED [ChEBI] +synonym: "antidiarrheals" RELATED [ChEBI] +synonym: "antidiarrhoeal" RELATED [ChEBI] +synonym: "antidiarrhoeal agent" RELATED [ChEBI] +synonym: "antidiarrhoeal agents" RELATED [ChEBI] +synonym: "antidiarrhoeal drugs" RELATED [ChEBI] +synonym: "antidiarrhoeals" RELATED [ChEBI] +synonym: "antiperistaltic" RELATED [ChEBI] +synonym: "antiperistaltic agent" RELATED [ChEBI] +synonym: "antiperistaltic agents" RELATED [ChEBI] +synonym: "antiperistaltic drug" RELATED [ChEBI] +synonym: "antiperistaltic drugs" RELATED [ChEBI] +synonym: "antiperistaltics" RELATED [ChEBI] +is_a: CHEBI:55324 ! gastrointestinal drug + +[Term] +id: CHEBI:55324 +name: gastrointestinal drug +namespace: chebi_ontology +def: "A drug used for its effects on the gastrointestinal system, e.g. controlling gastric acidity, regulating gastrointestinal motility and water flow, and improving digestion." [] +subset: 3_STAR +synonym: "gastrointestinal agent" RELATED [ChEBI] +synonym: "gastrointestinal agents" RELATED [ChEBI] +synonym: "gastrointestinal drugs" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:55370 +name: imidazolidinone +namespace: chebi_ontology +def: "An imidazolidine containing one or more oxo groups." [] +subset: 3_STAR +synonym: "imidazolidinones" RELATED [ChEBI] +is_a: CHEBI:38261 ! imidazolidines + +[Term] +id: CHEBI:55373 +name: isoxazoles +namespace: chebi_ontology +alt_id: CHEBI:46813 +def: "Oxazoles in which the N and O atoms are adjacent." [] +subset: 3_STAR +synonym: "1,2-oxazoles" RELATED [ChEBI] +synonym: "isoxazoles" EXACT [ChEBI] +is_a: CHEBI:35790 ! oxazole + +[Term] +id: CHEBI:55417 +name: maleimides +namespace: chebi_ontology +def: "Compounds containing a cyclic dicarboximide skeleton in which the two carboacyl groups on nitrogen together with the nitrogen itself form a 1H-pyrrole-2,5-dione structure." [] +subset: 3_STAR +is_a: CHEBI:35356 ! dicarboximide +relationship: has_functional_parent CHEBI:18300 ! maleic acid + +[Term] +id: CHEBI:55474 +name: N-acyl-L-homoserine lactone +namespace: chebi_ontology +def: "A carboxamide consisting of L-homoserine lactone having an unspecified N-acyl substituent." [] +subset: 3_STAR +synonym: "(3S)-3-alkanamido-4,5-dihydrofuran-2(3H)-one" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "128.035" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "128.10600" RELATED MASS [ChEBI] +synonym: "[*]C(=O)N[C@H]1CCOC1=O" RELATED SMILES [ChEBI] +synonym: "AHL" RELATED [ChEBI] +synonym: "AHLs" RELATED [ChEBI] +synonym: "an N-acyl-L-homoserine lactone" RELATED [UniProt] +synonym: "C5H6NO3R" RELATED FORMULA [ChEBI] +synonym: "N-acyl-L-homoserine lactones" RELATED [ChEBI] +synonym: "N-acyl-S-homoserine lactone" RELATED [ChEBI] +synonym: "N-acyl-S-homoserine lactones" RELATED [ChEBI] +synonym: "N-AHL" RELATED [ChEBI] +synonym: "N-AHLs" RELATED [ChEBI] +xref: KEGG:C18049 +xref: PMID:10794136 "Europe PMC" +xref: PMID:17338438 "Europe PMC" +is_a: CHEBI:22950 ! butan-4-olide +is_a: CHEBI:37622 ! carboxamide +relationship: has_functional_parent CHEBI:30655 ! L-homoserine lactone + +[Term] +id: CHEBI:5653 +name: hemiacetal +namespace: chebi_ontology +def: "A compound having the general formula RR'C(OH)OR'' (R'' =/= H)." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [KEGG_COMPOUND] +synonym: "46.005" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "46.025" RELATED MASS [KEGG_COMPOUND] +synonym: "CH2O2R2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Hemiacetal" EXACT [KEGG_COMPOUND] +synonym: "hemiacetals" EXACT IUPAC_NAME [IUPAC] +synonym: "hemiacetals" RELATED [ChEBI] +is_a: CHEBI:30879 ! alcohol + +[Term] +id: CHEBI:5686 +name: heterocyclic compound +namespace: chebi_ontology +def: "A cyclic compound having as ring members atoms of at least two different elements." [] +subset: 3_STAR +synonym: "compuesto heterociclico" RELATED [IUPAC] +synonym: "compuestos heterociclicos" RELATED [IUPAC] +synonym: "heterocycle" RELATED [ChEBI] +synonym: "Heterocyclic compound" EXACT [KEGG_COMPOUND] +synonym: "heterocyclic compounds" RELATED [ChEBI] +is_a: CHEBI:33595 ! cyclic compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:57287 +name: coenzyme A(4-) +namespace: chebi_ontology +def: "Tetraanion of coenzyme A." [] +subset: 3_STAR +synonym: "-4" RELATED CHARGE [ChEBI] +synonym: "3'-phosphonatoadenosine 5'-{3-[(3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-({3-oxo-3-[(2-sulfanylethyl)amino]propyl}amino)butyl] diphosphate}" EXACT IUPAC_NAME [IUPAC] +synonym: "763.084" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "763.50200" RELATED MASS [ChEBI] +synonym: "C21H32N7O16P3S" RELATED FORMULA [ChEBI] +synonym: "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCS" RELATED SMILES [ChEBI] +synonym: "CoA" RELATED [UniProt] +synonym: "InChI=1S/C21H36N7O16P3S/c1-21(2,16(31)19(32)24-4-3-12(29)23-5-6-48)8-41-47(38,39)44-46(36,37)40-7-11-15(43-45(33,34)35)14(30)20(42-11)28-10-27-13-17(22)25-9-26-18(13)28/h9-11,14-16,20,30-31,48H,3-8H2,1-2H3,(H,23,29)(H,24,32)(H,36,37)(H,38,39)(H2,22,25,26)(H2,33,34,35)/p-4/t11-,14-,15-,16+,20-/m1/s1" RELATED InChI [ChEBI] +synonym: "RGJOEKWQDUBAIZ-IBOSZNHHSA-J" RELATED InChIKey [ChEBI] +xref: Beilstein:11604429 "Beilstein" +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:15346 ! coenzyme A + +[Term] +id: CHEBI:57288 +name: acetyl-CoA(4-) +namespace: chebi_ontology +def: "An acyl-CoA(4-) that is the tetraanion of acetyl-CoA, arising from deprotonation of the phosphate and diphosphate OH groups." [] +subset: 3_STAR +synonym: "-4" RELATED CHARGE [ChEBI] +synonym: "3'-phosphonatoadenosine 5'-(3-{(3R)-4-[(3-{[2-(acetylsulfanyl)ethyl]amino}-3-oxopropyl)amino]-3-hydroxy-2,2-dimethyl-4-oxobutyl} diphosphate)" EXACT IUPAC_NAME [IUPAC] +synonym: "805.094" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "805.53900" RELATED MASS [ChEBI] +synonym: "AcCoA(4-)" RELATED [ChEBI] +synonym: "acetyl-CoA" RELATED [UniProt] +synonym: "acetyl-CoA tetraanion" RELATED [ChEBI] +synonym: "acetyl-coenzyme A(4-)" RELATED [ChEBI] +synonym: "C23H34N7O17P3S" RELATED FORMULA [ChEBI] +synonym: "CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C23H38N7O17P3S/c1-12(31)51-7-6-25-14(32)4-5-26-21(35)18(34)23(2,3)9-44-50(41,42)47-49(39,40)43-8-13-17(46-48(36,37)38)16(33)22(45-13)30-11-29-15-19(24)27-10-28-20(15)30/h10-11,13,16-18,22,33-34H,4-9H2,1-3H3,(H,25,32)(H,26,35)(H,39,40)(H,41,42)(H2,24,27,28)(H2,36,37,38)/p-4/t13-,16-,17-,18+,22-/m1/s1" RELATED InChI [ChEBI] +synonym: "ZSLZBFCDCINBPY-ZSJPKINUSA-J" RELATED InChIKey [ChEBI] +xref: Beilstein:8468140 "Beilstein" +is_a: CHEBI:58342 ! acyl-CoA(4-) +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:15351 ! acetyl-CoA + +[Term] +id: CHEBI:57299 +name: ATP(3-) +namespace: chebi_ontology +def: "A ribonucleoside triphosphate oxoanion that is the trianion of adenosine 5'-triphosphate arising from deprotonation of three of the four free triphosphate OH groups." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "503.972" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "504.15720" RELATED MASS [ChEBI] +synonym: "ATP(3-)" EXACT [UniProt] +synonym: "C10H13N5O13P3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/p-3/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP(O)([O-])=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "ZKHQWZAMYRWXGA-KQYNXXCUSA-K" RELATED InChIKey [ChEBI] +xref: Beilstein:9535056 "Beilstein" +is_a: CHEBI:59724 ! ribonucleoside triphosphate oxoanion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:30616 ! ATP(4-) +relationship: is_conjugate_base_of CHEBI:15422 ! ATP +relationship: is_conjugate_base_of CHEBI:237958 ! ({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(9H-purin-9-yl)oxolan-2-yl]methyl phosphonato}oxy)(phosphonatooxy)phosphinate + +[Term] +id: CHEBI:57305 +name: glycine zwitterion +namespace: chebi_ontology +def: "An amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of glycine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-azaniumylacetate" EXACT IUPAC_NAME [IUPAC] +synonym: "75.032" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "75.06660" RELATED MASS [ChEBI] +synonym: "[NH3+]CC([O-])=O" RELATED SMILES [ChEBI] +synonym: "C2H5NO2" RELATED FORMULA [ChEBI] +synonym: "DHMQDGOQFOQNFH-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "glycine" RELATED [UniProt] +synonym: "InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)" RELATED InChI [ChEBI] +xref: Gmelin:1807 "Gmelin" +xref: MetaCyc:GLY +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_tautomer_of CHEBI:15428 ! glycine + +[Term] +id: CHEBI:57390 +name: phenylacetyl-CoA(4-) +namespace: chebi_ontology +def: "Tetraanion of phenylacetyl-CoA arising from deprotonation of phosphate and diphosphate functions." [] +subset: 3_STAR +synonym: "-4" RELATED CHARGE [ChEBI] +synonym: "3'-phosphonatoadenosine 5'-{3-[(3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-{[3-oxo-3-({2-[(phenylacetyl)sulfanyl]ethyl}amino)propyl]amino}butyl] diphosphate}" EXACT IUPAC_NAME [IUPAC] +synonym: "881.126" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "881.63500" RELATED MASS [ChEBI] +synonym: "C29H38N7O17P3S" RELATED FORMULA [ChEBI] +synonym: "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)Cc1ccccc1" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C29H42N7O17P3S/c1-29(2,24(40)27(41)32-9-8-19(37)31-10-11-57-20(38)12-17-6-4-3-5-7-17)14-50-56(47,48)53-55(45,46)49-13-18-23(52-54(42,43)44)22(39)28(51-18)36-16-35-21-25(30)33-15-34-26(21)36/h3-7,15-16,18,22-24,28,39-40H,8-14H2,1-2H3,(H,31,37)(H,32,41)(H,45,46)(H,47,48)(H2,30,33,34)(H2,42,43,44)/p-4/t18-,22-,23-,24+,28-/m1/s1" RELATED InChI [ChEBI] +synonym: "phenylacetyl-CoA" RELATED [UniProt] +synonym: "ZIGIFDRJFZYEEQ-CECATXLMSA-J" RELATED InChIKey [ChEBI] +is_a: CHEBI:58342 ! acyl-CoA(4-) +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:15537 ! phenylacetyl-CoA + +[Term] +id: CHEBI:57416 +name: D-alanine zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of D-alanine." [] +subset: 3_STAR +synonym: "(2R)-2-azaniumylpropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "89.048" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "89.09320" RELATED MASS [ChEBI] +synonym: "C3H7NO2" RELATED FORMULA [ChEBI] +synonym: "C[C@@H]([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "D-alanine" RELATED [UniProt] +synonym: "D-alanine zwitterion" EXACT [IUPAC] +synonym: "InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "QNAYBMKLOCPYGJ-UWTATZPHSA-N" RELATED InChIKey [ChEBI] +is_a: CHEBI:66916 ! alanine zwitterion +relationship: is_tautomer_of CHEBI:15570 ! D-alanine + +[Term] +id: CHEBI:57481 +name: UTP(3-) +namespace: chebi_ontology +def: "Trianion of UTP arising from deprotonation of three of the OH groups from the triphosphate moiety." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "480.945" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "481.11730" RELATED MASS [ChEBI] +synonym: "C9H12N2O15P3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C9H15N2O15P3/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H,10,12,15)(H2,16,17,18)/p-3/t4-,6-,7-,8-/m1/s1" RELATED InChI [ChEBI] +synonym: "O[C@@H]1[C@@H](COP([O-])(=O)OP([O-])(=O)OP(O)([O-])=O)O[C@H]([C@@H]1O)n1ccc(=O)[nH]c1=O" RELATED SMILES [ChEBI] +synonym: "PGAVKCOVUIYSFO-XVFCMESISA-K" RELATED InChIKey [ChEBI] +synonym: "UTP (3-)" RELATED [UniProt] +synonym: "UTP trianion" RELATED [ChEBI] +xref: Beilstein:3807363 "Beilstein" +is_a: CHEBI:59724 ! ribonucleoside triphosphate oxoanion +relationship: is_conjugate_base_of CHEBI:15713 ! UTP + +[Term] +id: CHEBI:57513 +name: N-acetyl-D-glucosamine 6-phosphate(2-) +namespace: chebi_ontology +def: "Dianion of N-acetyl-D-glucosamine 6-phosphate arising from deprotonation of both OH groups of the phosphate." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "2-acetamido-2-deoxy-6-O-phosphonato-D-glucopyranose" RELATED [ChEBI] +synonym: "2-acetamido-2-deoxy-D-glucopyranose 6-phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "299.041" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "299.17180" RELATED MASS [ChEBI] +synonym: "BRGMHAYQAZFZDJ-RTRLPJTCSA-L" RELATED InChIKey [ChEBI] +synonym: "C8H14NO9P" RELATED FORMULA [ChEBI] +synonym: "CC(=O)N[C@H]1C(O)O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C8H16NO9P/c1-3(10)9-5-7(12)6(11)4(18-8(5)13)2-17-19(14,15)16/h4-8,11-13H,2H2,1H3,(H,9,10)(H2,14,15,16)/p-2/t4-,5-,6-,7-,8?/m1/s1" RELATED InChI [ChEBI] +synonym: "N-acetyl-D-glucosamine 6-phosphate" RELATED [UniProt] +synonym: "N-acetyl-D-glucosamine 6-phosphate dianion" RELATED [ChEBI] +xref: Beilstein:5355763 "Beilstein" +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:15784 ! N-acetyl-D-glucosamine 6-phosphate + +[Term] +id: CHEBI:57560 +name: long-chain fatty acid anion +namespace: chebi_ontology +alt_id: CHEBI:13652 +def: "A fatty acid anion with a chain length of C13 or greater." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "43.990" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[O-]C([*])=O" RELATED SMILES [ChEBI] +synonym: "a long-chain carboxylate" RELATED [ChEBI] +synonym: "a long-chain fatty acid" RELATED [UniProt] +synonym: "CO2R" RELATED FORMULA [ChEBI] +synonym: "long-chain fatty acid anions" RELATED [ChEBI] +is_a: CHEBI:28868 ! fatty acid anion +relationship: is_conjugate_base_of CHEBI:15904 ! long-chain fatty acid + +[Term] +id: CHEBI:57586 +name: biotinate +namespace: chebi_ontology +def: "Conjugate base of biotin arising from deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "243.080" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "243.30300" RELATED MASS [ChEBI] +synonym: "5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]12CS[C@@H](CCCCC([O-])=O)[C@@]1([H])NC(=O)N2" RELATED SMILES [ChEBI] +synonym: "biotin" RELATED [UniProt] +synonym: "biotinate anion" RELATED [ChEBI] +synonym: "C10H15N2O3S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C10H16N2O3S/c13-8(14)4-2-1-3-7-9-6(5-16-7)11-10(15)12-9/h6-7,9H,1-5H2,(H,13,14)(H2,11,12,15)/p-1/t6-,7-,9-/m0/s1" RELATED InChI [ChEBI] +synonym: "YBJHBAHKTGYVGT-ZKWXMUAHSA-M" RELATED InChIKey [ChEBI] +xref: Beilstein:10186323 "Beilstein" +xref: MetaCyc:BIOTIN +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:15956 ! biotin + +[Term] +id: CHEBI:57597 +name: sn-glycerol 3-phosphate(2-) +namespace: chebi_ontology +def: "An organophosphate oxoanion that is the dianion of sn-glycerol 3-phosphate arising from deprotonation of both phosphate OH groups." [] +subset: 3_STAR +synonym: "(2R)-2,3-dihydroxypropyl phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "(2R)-3-(phosphonatooxy)propane-1,2-diol" RELATED [ChEBI] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "169.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "170.05780" RELATED MASS [ChEBI] +synonym: "AWUCVROLDVIAJX-GSVOUGTGSA-L" RELATED InChIKey [ChEBI] +synonym: "C3H7O6P" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/p-2/t3-/m1/s1" RELATED InChI [ChEBI] +synonym: "OC[C@@H](O)COP([O-])([O-])=O" RELATED SMILES [ChEBI] +synonym: "sn-glycerol 3-phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "sn-glycerol 3-phosphate" RELATED [UniProt] +xref: Beilstein:6115564 "Beilstein" +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:15978 ! sn-glycerol 3-phosphate + +[Term] +id: CHEBI:57599 +name: N-acyl-D-glucosamine 6-phosphate(2-) +namespace: chebi_ontology +def: "Dianion of N-acyl-D-glucosamine 6-phosphate arising from deprotonation of the phosphate OH groups." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "284.017" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "284.13730" RELATED MASS [ChEBI] +synonym: "an N-acyl-D-glucosamine 6-phosphate" RELATED [UniProt] +synonym: "C7H11NO9PR" RELATED FORMULA [ChEBI] +synonym: "N-acyl-D-glucosamine 6-phosphate dianion" RELATED [ChEBI] +synonym: "O[C@@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H](O)[C@H]1NC([*])=O" RELATED SMILES [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:15993 ! N-acyl-D-glucosamine 6-phosphate + +[Term] +id: CHEBI:57600 +name: GTP(3-) +namespace: chebi_ontology +def: "Trianion of GTP arising from deprotonation of three of the four phosphate OH groups." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "519.967" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "520.15660" RELATED MASS [ChEBI] +synonym: "C10H13N5O14P3" RELATED FORMULA [ChEBI] +synonym: "GTP trianion" RELATED [ChEBI] +synonym: "GTP(3-)" EXACT [UniProt] +synonym: "InChI=1S/C10H16N5O14P3/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,13,14,18)/p-3/t3-,5-,6-,9-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP(O)([O-])=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "XKMLYUALXHKNFT-UUOKFMHZSA-K" RELATED InChIKey [ChEBI] +xref: Beilstein:4285687 "Beilstein" +xref: Gmelin:2507814 "Gmelin" +is_a: CHEBI:37121 ! guanosine 5'-phosphate +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: is_conjugate_acid_of CHEBI:37565 ! GTP(4-) +relationship: is_conjugate_base_of CHEBI:15996 ! GTP + +[Term] +id: CHEBI:57630 +name: gamma-amino-beta-hydroxybutyric acid zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of gamma-amino-beta-hydroxybutyric acid having an anionic carboxy group and a protonated amino group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "119.058" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "119.11920" RELATED MASS [ChEBI] +synonym: "4-ammonio-3-hydroxybutanoate" RELATED [ChEBI] +synonym: "4-azaniumyl-3-hydroxybutanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "[NH3+]CC(O)CC([O-])=O" RELATED SMILES [ChEBI] +synonym: "C4H9NO3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H9NO3/c5-2-3(6)1-4(7)8/h3,6H,1-2,5H2,(H,7,8)" RELATED InChI [ChEBI] +synonym: "YQGDEPYYFWUPGO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_conjugate_acid_of CHEBI:11955 ! 4-amino-3-hydroxybutanoate +relationship: is_tautomer_of CHEBI:16080 ! gamma-amino-beta-hydroxybutyric acid + +[Term] +id: CHEBI:57670 +name: N-acylglycinate +namespace: chebi_ontology +def: "A carboxylic acid anion obtained by deprotonation of the carboxy group of any N-acylglycine." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "101.011" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "101.06080" RELATED MASS [ChEBI] +synonym: "[O-]C(=O)CNC([*])=O" RELATED SMILES [ChEBI] +synonym: "an N-acylglycine" RELATED [UniProt] +synonym: "C3H3NO3R" RELATED FORMULA [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion +relationship: has_functional_parent CHEBI:32508 ! glycinate +relationship: is_conjugate_base_of CHEBI:16180 ! N-acylglycine + +[Term] +id: CHEBI:57685 +name: sn-glycerol 1-phosphate(2-) +namespace: chebi_ontology +def: "A glycerol 1-phosphate(2-) that is the dianion of sn-glycerol 1-phosphate arising from deprotonation of both phosphate OH groups." [] +subset: 3_STAR +synonym: "(2S)-2,3-dihydroxypropyl phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "169.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "170.05780" RELATED MASS [ChEBI] +synonym: "AWUCVROLDVIAJX-VKHMYHEASA-L" RELATED InChIKey [ChEBI] +synonym: "C3H7O6P" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/p-2/t3-/m0/s1" RELATED InChI [ChEBI] +synonym: "OC[C@H](O)COP([O-])([O-])=O" RELATED SMILES [ChEBI] +synonym: "sn-glycerol 1-phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "sn-glycerol 1-phosphate" RELATED [UniProt] +synonym: "sn-glycerol 1-phosphate dianion" RELATED [ChEBI] +xref: Beilstein:3543395 "Beilstein" +xref: MetaCyc:SN-GLYCEROL-1-PHOSPHATE +xref: Reaxys:3543395 "Reaxys" +is_a: CHEBI:231935 ! glycerol 1-phosphate(2-) +relationship: has_role CHEBI:78947 ! archaeal metabolite +relationship: is_conjugate_base_of CHEBI:16221 ! sn-glycerol 1-phosphate + +[Term] +id: CHEBI:57694 +name: quercetin-7-olate +namespace: chebi_ontology +def: "Conjugate base of quercetin arising from selective deprotonation of the 7-hydroxy group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "2-(3,4-dihydroxyphenyl)-3,5-dihydroxy-4-oxo-4-chromen-7-olate" EXACT IUPAC_NAME [IUPAC] +synonym: "301.035" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "301.22830" RELATED MASS [ChEBI] +synonym: "C15H9O7" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C15H10O7/c16-7-4-10(19)12-11(5-7)22-15(14(21)13(12)20)6-1-2-8(17)9(18)3-6/h1-5,16-19,21H/p-1" RELATED InChI [ChEBI] +synonym: "Oc1ccc(cc1O)-c1oc2cc([O-])cc(O)c2c(=O)c1O" RELATED SMILES [ChEBI] +synonym: "quercetin" RELATED [UniProt] +synonym: "quercetin anion" RELATED [ChEBI] +synonym: "REFJWTPEDVJJIY-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +is_a: CHEBI:58588 ! flavonol oxoanion +relationship: is_conjugate_base_of CHEBI:16243 ! quercetin + +[Term] +id: CHEBI:57719 +name: D-tryptophan zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of D-tryptophan having an anionic carboxy group and a protonated alpha-amino group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2R)-2-ammonio-3-(1H-indol-3-yl)propanoate" RELATED [ChEBI] +synonym: "(2R)-2-azaniumyl-3-(1H-indol-3-yl)propanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "204.090" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "204.22520" RELATED MASS [ChEBI] +synonym: "[NH3+][C@H](Cc1c[nH]c2ccccc12)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C11H12N2O2" RELATED FORMULA [ChEBI] +synonym: "D-tryptophan" RELATED [UniProt] +synonym: "InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/t9-/m1/s1" RELATED InChI [ChEBI] +synonym: "QIVBCDIJIAJPQS-SECBINFHSA-N" RELATED InChIKey [ChEBI] +synonym: "tryptophan" RELATED [ChEBI] +xref: MetaCyc:D-TRYPTOPHAN +is_a: CHEBI:64554 ! tryptophan zwitterion +relationship: is_tautomer_of CHEBI:16296 ! D-tryptophan + +[Term] +id: CHEBI:57757 +name: D-threonine zwitterion +namespace: chebi_ontology +def: "A D-alpha-amino acid zwitterion that is D-threonine in which a proton has been transferred from the carboxy group to the amino group. It is the major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2R,3S)-2-azaniumyl-3-hydroxybutanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "119.058" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "119.11920" RELATED MASS [ChEBI] +synonym: "AYFVYJQAPQTCCC-STHAYSLISA-N" RELATED InChIKey [ChEBI] +synonym: "C4H9NO3" RELATED FORMULA [ChEBI] +synonym: "C[C@H](O)[C@@H]([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "D-threonine" RELATED [UniProt] +synonym: "InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/t2-,3+/m0/s1" RELATED InChI [ChEBI] +is_a: CHEBI:59871 ! D-alpha-amino acid zwitterion +relationship: is_tautomer_of CHEBI:16398 ! D-threonine + +[Term] +id: CHEBI:57834 +name: spermidine(3+) +namespace: chebi_ontology +def: "An ammonium ion that is the trication of spermidine, formed by protonation at all three nitrogens." [] +subset: 3_STAR +synonym: "(4-azaniumylbutyl)(3-azaniumylpropyl)azanium" EXACT IUPAC_NAME [IUPAC] +synonym: "+3" RELATED CHARGE [ChEBI] +synonym: "148.181" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "148.26970" RELATED MASS [ChEBI] +synonym: "[NH3+]CCCC[NH2+]CCC[NH3+]" RELATED SMILES [ChEBI] +synonym: "ATHGHQPFGPMSJY-UHFFFAOYSA-Q" RELATED InChIKey [ChEBI] +synonym: "C7H22N3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C7H19N3/c8-4-1-2-6-10-7-3-5-9/h10H,1-9H2/p+3" RELATED InChI [ChEBI] +synonym: "N-(3-ammoniopropyl)butane-1,4-diaminium" RELATED [IUPAC] +synonym: "spermidine" RELATED [UniProt] +xref: MetaCyc:SPERMIDINE +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:35274 ! ammonium ion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:16610 ! spermidine + +[Term] +id: CHEBI:57844 +name: L-methionine zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of L-methionine having a anionic carboxy group and a cationic amino group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2S)-2-ammonio-4-(methylsulfanyl)butanoate" RELATED [ChEBI] +synonym: "(2S)-2-azaniumyl-4-(methylsulfanyl)butanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "149.051" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "149.21100" RELATED MASS [ChEBI] +synonym: "C5H11NO2S" RELATED FORMULA [ChEBI] +synonym: "CSCC[C@H]([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "FFEARJCKVFRZRR-BYPYZUCNSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/t4-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-methionine" RELATED [UniProt] +xref: Gmelin:560248 "Gmelin" +xref: MetaCyc:MET +is_a: CHEBI:64558 ! methionine zwitterion +relationship: is_tautomer_of CHEBI:16643 ! L-methionine + +[Term] +id: CHEBI:57846 +name: L-fuculose 1-phosphate(2-) +namespace: chebi_ontology +def: "Dianion of L-fuculose 1-phosphate arising from deprotonation of the phosphate OH groups; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "242.019" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "242.12050" RELATED MASS [ChEBI] +synonym: "6-deoxy-1-O-phosphonato-L-tagatose" RELATED [IUPAC] +synonym: "6-deoxy-L-lyxo-hex-2-ulose 1-phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "6-deoxy-L-tagatose 1-phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H11O8P" RELATED FORMULA [ChEBI] +synonym: "C[C@H](O)[C@@H](O)[C@@H](O)C(=O)COP([O-])([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C6H13O8P/c1-3(7)5(9)6(10)4(8)2-14-15(11,12)13/h3,5-7,9-10H,2H2,1H3,(H2,11,12,13)/p-2/t3-,5+,6-/m0/s1" RELATED InChI [ChEBI] +synonym: "KNYGWWDTPGSEPD-LFRDXLMFSA-L" RELATED InChIKey [ChEBI] +synonym: "L-fuculose 1-phosphate" RELATED [UniProt] +synonym: "L-fuculose 1-phosphate dianio" RELATED [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:16647 ! L-fuculose 1-phosphate + +[Term] +id: CHEBI:57865 +name: UMP(2-) +namespace: chebi_ontology +def: "A nucleoside 5'-monophosphate(2-) that results from the removal of two protons from the phosphate group of UMP." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "322.020" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "322.16540" RELATED MASS [ChEBI] +synonym: "5'-O-phosphonatouridine" EXACT IUPAC_NAME [IUPAC] +synonym: "5'-uridylate" RELATED [ChEBI] +synonym: "C9H11N2O9P" RELATED FORMULA [ChEBI] +synonym: "DJJCXFVJDGTHFX-XVFCMESISA-L" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C9H13N2O9P/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,18)/p-2/t4-,6-,7-,8-/m1/s1" RELATED InChI [ChEBI] +synonym: "O[C@@H]1[C@@H](COP([O-])([O-])=O)O[C@H]([C@@H]1O)n1ccc(=O)[nH]c1=O" RELATED SMILES [ChEBI] +synonym: "UMP" RELATED [UniProt] +synonym: "UMP dianion" RELATED [ChEBI] +synonym: "uridine 5'-phosphate" RELATED [ChEBI] +xref: Beilstein:3570858 "Beilstein" +xref: Gmelin:341500 "Gmelin" +is_a: CHEBI:58043 ! nucleoside 5'-monophosphate(2-) +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:16695 ! UMP + +[Term] +id: CHEBI:57867 +name: nucleoside 5'-phosphate dianion +namespace: chebi_ontology +def: "The conjugate base of a nucleoside 5'-phosphate." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "193.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "194.07920" RELATED MASS [ChEBI] +synonym: "a nucleoside 5'-phosphate" RELATED [UniProt] +synonym: "C5H7O6PR2" RELATED FORMULA [ChEBI] +synonym: "nucleoside 5'-phosphate dianions" RELATED [ChEBI] +synonym: "O[C@H]1[C@@H]([*])[C@H]([*])O[C@@H]1COP([O-])([O-])=O" RELATED SMILES [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:16701 ! nucleoside 5'-phosphate + +[Term] +id: CHEBI:57869 +name: 6-aminopenicillanic acid zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of 6-aminopenicillanic acid arising from migration of a proton from the carboxy group to the 6-amino group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2S,5R,6R)-6-azaniumyl-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylate" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "216.057" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "216.25700" RELATED MASS [ChEBI] +synonym: "6-aminopenicillanate" RELATED [UniProt] +synonym: "6-azaniumyl-2,2-dimethylpenam-3alpha-carboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]12SC(C)(C)[C@@H](N1C(=O)[C@H]2[NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C8H12N2O3S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C8H12N2O3S/c1-8(2)4(7(12)13)10-5(11)3(9)6(10)14-8/h3-4,6H,9H2,1-2H3,(H,12,13)/t3-,4+,6-/m1/s1" RELATED InChI [ChEBI] +synonym: "NGHVIOIJCVXTGV-ALEPSDHESA-N" RELATED InChIKey [ChEBI] +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_conjugate_acid_of CHEBI:30938 ! 6-aminopenicillanate +relationship: is_tautomer_of CHEBI:16705 ! 6-aminopenicillanic acid + +[Term] +id: CHEBI:57912 +name: L-tryptophan zwitterion +namespace: chebi_ontology +def: "An L-alpha-amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of L-tryptophan; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2S)-2-ammonio-3-(1H-indol-3-yl)propanoate" RELATED [IUPAC] +synonym: "(2S)-2-azaniumyl-3-(1H-indol-3-yl)propanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "204.090" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "204.22520" RELATED MASS [ChEBI] +synonym: "[NH3+][C@@H](Cc1c[nH]c2ccccc12)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C11H12N2O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/t9-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-tryptophan" RELATED [UniProt] +synonym: "QIVBCDIJIAJPQS-VIFPVBQESA-N" RELATED InChIKey [ChEBI] +synonym: "tryptophan" RELATED [ChEBI] +xref: Gmelin:1896155 "Gmelin" +xref: MetaCyc:TRP +is_a: CHEBI:59869 ! L-alpha-amino acid zwitterion +is_a: CHEBI:64554 ! tryptophan zwitterion +relationship: is_tautomer_of CHEBI:16828 ! L-tryptophan + +[Term] +id: CHEBI:57925 +name: glutathionate(1-) +namespace: chebi_ontology +def: "A peptide anion obtained by deprotonation of both carboxy groups and protonation of the glutamyl amino group of glutathione; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "306.076" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "306.31600" RELATED MASS [ChEBI] +synonym: "[NH3+][C@@H](CCC(=O)N[C@@H](CS)C(=O)NCC([O-])=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C10H16N3O6S" RELATED FORMULA [ChEBI] +synonym: "glutathionate" RELATED [ChEBI] +synonym: "glutathionate anion" RELATED [ChEBI] +synonym: "glutathionate ion" RELATED [ChEBI] +synonym: "glutathione" RELATED [UniProt] +synonym: "InChI=1S/C10H17N3O6S/c11-5(10(18)19)1-2-7(14)13-6(4-20)9(17)12-3-8(15)16/h5-6,20H,1-4,11H2,(H,12,17)(H,13,14)(H,15,16)(H,18,19)/p-1/t5-,6-/m0/s1" RELATED InChI [ChEBI] +synonym: "RWSXRVCMGQZWBV-WDSKDSINSA-M" RELATED InChIKey [ChEBI] +xref: PMID:4200890 "Europe PMC" +xref: PMID:4745654 "Europe PMC" +is_a: CHEBI:60334 ! peptide anion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:16856 ! glutathione + +[Term] +id: CHEBI:57926 +name: L-threonine zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of L-threonine arising from transfer of a proton from the carboxy to the amino group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2S,3R)-2-ammonio-3-hydroxybutanoate" RELATED [IUPAC] +synonym: "(2S,3R)-2-azaniumyl-3-hydroxybutanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "119.058" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "119.11920" RELATED MASS [ChEBI] +synonym: "AYFVYJQAPQTCCC-GBXIJSLDSA-N" RELATED InChIKey [ChEBI] +synonym: "C4H9NO3" RELATED FORMULA [ChEBI] +synonym: "C[C@@H](O)[C@H]([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)/t2-,3+/m1/s1" RELATED InChI [ChEBI] +synonym: "L-threonine" RELATED [UniProt] +xref: Gmelin:2506280 "Gmelin" +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_tautomer_of CHEBI:16857 ! L-threonine + +[Term] +id: CHEBI:57930 +name: nucleoside 5'-diphosphate(3-) +namespace: chebi_ontology +def: "Trianion of nucleoside diiphosphate arising from deprotonation of all three free OH groups of the diphosphate; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "289.959" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "305.09310" RELATED MASS [ChEBI] +synonym: "a ribonucleoside 5'-diphosphate" RELATED [UniProt] +synonym: "C5H8O10P2R" RELATED FORMULA [ChEBI] +synonym: "C[C@@H]1O[C@H](COP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "NDP trianion" RELATED [ChEBI] +synonym: "NDP(3-)" RELATED [ChEBI] +synonym: "nucleoside diphosphate trianion" RELATED [ChEBI] +synonym: "ribonucleoside diphosphate trianion" RELATED [ChEBI] +synonym: "ribonucleoside diphosphate(3-)" RELATED [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:16862 ! nucleoside diphosphate + +[Term] +id: CHEBI:57932 +name: D-methionine zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of D-methionine arising from transfer of a proton from the carboxy to the amino group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2R)-2-ammonio-4-(methylsulfanyl)butanoate" RELATED [IUPAC] +synonym: "(2R)-2-azaniumyl-4-(methylsulfanyl)butanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "149.051" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "149.21100" RELATED MASS [ChEBI] +synonym: "C5H11NO2S" RELATED FORMULA [ChEBI] +synonym: "CSCC[C@@H]([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "D-methionine" RELATED [UniProt] +synonym: "FFEARJCKVFRZRR-SCSAIBSYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/t4-/m1/s1" RELATED InChI [ChEBI] +xref: MetaCyc:CPD-218 +is_a: CHEBI:64558 ! methionine zwitterion +relationship: is_tautomer_of CHEBI:16867 ! D-methionine + +[Term] +id: CHEBI:57966 +name: beta-alanine zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of beta-alanine arising from transfer of a proton from the carboxy to the amino group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3-ammoniopropanoate" RELATED [IUPAC] +synonym: "3-azaniumylpropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "89.048" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "89.09320" RELATED MASS [ChEBI] +synonym: "[NH3+]CCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "beta-alanine" RELATED [UniProt] +synonym: "C3H7NO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H7NO2/c4-2-1-3(5)6/h1-2,4H2,(H,5,6)" RELATED InChI [ChEBI] +synonym: "UCMIRNVEIXFBKS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Gmelin:454332 "Gmelin" +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_tautomer_of CHEBI:16958 ! beta-alanine + +[Term] +id: CHEBI:57971 +name: hygromycin B(3+) +namespace: chebi_ontology +def: "An ammonium ion that is the trication of hygromycin B arising from protonation of the three amino groups; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(1R,2S,3R,5S,6R)-3-azaniumyl-2,6-dihydroxy-5-(methylazaniumyl)cyclohexyl O-6-azaniumyl-6-deoxy-L-glycero-D-galacto-heptopyranosylidene-(1->2-3)-beta-D-talopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "+3" RELATED CHARGE [ChEBI] +synonym: "530.256" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "530.54390" RELATED MASS [ChEBI] +synonym: "C20H40N3O13" RELATED FORMULA [ChEBI] +synonym: "C[NH2+][C@H]1C[C@@H]([NH3+])[C@H](O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@@H]3O[C@@]4(O[C@H](C([NH3+])CO)[C@H](O)[C@H](O)[C@H]4O)O[C@H]23)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "GRRNUXAQVGOGFE-NZSRVPFOSA-Q" RELATED InChIKey [ChEBI] +synonym: "hygromycin B" RELATED [UniProt] +synonym: "hygromycin B trication" RELATED [ChEBI] +synonym: "InChI=1S/C20H37N3O13/c1-23-7-2-5(21)9(26)15(10(7)27)33-19-17-16(11(28)8(4-25)32-19)35-20(36-17)18(31)13(30)12(29)14(34-20)6(22)3-24/h5-19,23-31H,2-4,21-22H2,1H3/p+3/t5-,6?,7+,8-,9+,10-,11+,12-,13+,14-,15-,16+,17+,18-,19+,20-/m1/s1" RELATED InChI [ChEBI] +is_a: CHEBI:35274 ! ammonium ion +relationship: is_conjugate_acid_of CHEBI:16976 ! hygromycin B + +[Term] +id: CHEBI:57972 +name: L-alanine zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of L-alanine arising from transfer of a proton from the carboxy to the amino group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2S)-2-ammoniopropanoate" RELATED [IUPAC] +synonym: "(2S)-2-azaniumylpropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "89.048" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "89.09320" RELATED MASS [ChEBI] +synonym: "C3H7NO2" RELATED FORMULA [ChEBI] +synonym: "C[C@H]([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-alanine" RELATED [UniProt] +synonym: "QNAYBMKLOCPYGJ-REOHCLBHSA-N" RELATED InChIKey [ChEBI] +xref: Gmelin:362662 "Gmelin" +is_a: CHEBI:66916 ! alanine zwitterion +relationship: is_tautomer_of CHEBI:16977 ! L-alanine + +[Term] +id: CHEBI:57990 +name: 2-dehydro-3-deoxy-D-gluconate +namespace: chebi_ontology +def: "The conjugate base of 2-dehydro-3-deoxy-D-gluconic acid; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "177.040" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "177.13210" RELATED MASS [ChEBI] +synonym: "2-dehydro-3-deoxy-D-gluconate" EXACT [UniProt] +synonym: "2-dehydro-3-deoxy-D-gluconate anion" RELATED [ChEBI] +synonym: "2-dehydro-3-deoxy-D-gluconate(1-)" RELATED [ChEBI] +synonym: "3-deoxy-D-erythro-hex-2-ulosonate" EXACT IUPAC_NAME [IUPAC] +synonym: "C6H9O6" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H10O6/c7-2-5(10)3(8)1-4(9)6(11)12/h3,5,7-8,10H,1-2H2,(H,11,12)/p-1/t3-,5+/m0/s1" RELATED InChI [ChEBI] +synonym: "OC[C@@H](O)[C@@H](O)CC(=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "WPAMZTWLKIDIOP-WVZVXSGGSA-M" RELATED InChIKey [ChEBI] +xref: PMID:16794308 "Europe PMC" +xref: Reaxys:6697389 "Reaxys" +is_a: CHEBI:33721 ! carbohydrate acid anion +is_a: CHEBI:35179 ! 2-oxo monocarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:17032 ! 2-dehydro-3-deoxy-D-gluconic acid + +[Term] +id: CHEBI:58001 +name: primary aliphatic ammonium ion +namespace: chebi_ontology +def: "The conjugate acid of a primary aliphatic amine." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "31.042" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "31.05710" RELATED MASS [ChEBI] +synonym: "[NH3+]C[*]" RELATED SMILES [ChEBI] +synonym: "an aliphatic amine" RELATED [UniProt] +synonym: "CH5NR" RELATED FORMULA [ChEBI] +synonym: "primary aliphatic ammonium cation" RELATED [ChEBI] +synonym: "primary aliphatic ammonium cations" RELATED [ChEBI] +synonym: "primary aliphatic ammonium ions" RELATED [ChEBI] +is_a: CHEBI:65296 ! primary ammonium ion +relationship: is_conjugate_acid_of CHEBI:17062 ! primary aliphatic amine + +[Term] +id: CHEBI:58007 +name: streptomycin(3+) +namespace: chebi_ontology +def: "Trication of streptomycin arising from protonation of the guanidino and secondary amino groups." [] +subset: 3_STAR +synonym: "(1R,2R,3S,4R,5R,6S)-2,4-bis{[amino(iminio)methyl]amino}-3,5,6-trihydroxycyclohexyl 5-deoxy-2-O-[2-deoxy-2-(methylammonio)-alpha-L-glucopyranosyl]-3-C-formyl-alpha-L-lyxofuranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "+3" RELATED CHARGE [ChEBI] +synonym: "584.289" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "584.59790" RELATED MASS [ChEBI] +synonym: "C21H42N7O12" RELATED FORMULA [ChEBI] +synonym: "C[NH2+][C@H]1[C@H](O)[C@@H](O)[C@H](CO)O[C@H]1O[C@H]1[C@@H](O[C@@H](C)[C@]1(O)C=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](NC(N)=[NH2+])[C@@H](O)[C@@H]1NC(N)=[NH2+]" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C21H39N7O12/c1-5-21(36,4-30)16(40-17-9(26-2)13(34)10(31)6(3-29)38-17)18(37-5)39-15-8(28-20(24)25)11(32)7(27-19(22)23)12(33)14(15)35/h4-18,26,29,31-36H,3H2,1-2H3,(H4,22,23,27)(H4,24,25,28)/p+3/t5-,6-,7+,8-,9-,10-,11+,12-,13-,14+,15+,16-,17-,18-,21+/m0/s1" RELATED InChI [ChEBI] +synonym: "streptomycin" RELATED [UniProt] +synonym: "streptomycin trication" RELATED [ChEBI] +synonym: "UCSJYZPVAKXKNQ-HZYVHMACSA-Q" RELATED InChIKey [ChEBI] +is_a: CHEBI:60251 ! guanidinium ion +relationship: is_conjugate_acid_of CHEBI:17076 ! streptomycin + +[Term] +id: CHEBI:58032 +name: anhydrotetracycline zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of anhydrotetracycline arising from transfer of a proton from the 2-hydroxy to the tertiary amino group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(1S,4aS,12aS)-3-carbamoyl-1-(dimethylammonio)-4a,6,7-trihydroxy-11-methyl-4,5-dioxo-1,4,4a,5,12,12a-hexahydrotetracen-2-olate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "426.143" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "426.41930" RELATED MASS [ChEBI] +synonym: "[H][C@@]12Cc3c(C)c4cccc(O)c4c(O)c3C(=O)[C@]1(O)C(=O)C(C(N)=O)=C([O-])[C@H]2[NH+](C)C" RELATED SMILES [ChEBI] +synonym: "anhydrotetracycline" RELATED [UniProt] +synonym: "C22H22N2O7" RELATED FORMULA [ChEBI] +synonym: "CXCVEERYMJZMMM-DOCRCCHOSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C22H22N2O7/c1-8-9-5-4-6-12(25)13(9)17(26)14-10(8)7-11-16(24(2)3)18(27)15(21(23)30)20(29)22(11,31)19(14)28/h4-6,11,16,25-27,31H,7H2,1-3H3,(H2,23,30)/t11-,16-,22-/m0/s1" RELATED InChI [ChEBI] +is_a: CHEBI:27369 ! zwitterion +relationship: is_tautomer_of CHEBI:17146 ! anhydrotetracycline + +[Term] +id: CHEBI:58043 +name: nucleoside 5'-monophosphate(2-) +namespace: chebi_ontology +alt_id: CHEBI:85513 +def: "The dianion of a nucleoside monophosphate: major species at pH 7.3." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "211.001" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "211.08660" RELATED MASS [ChEBI] +synonym: "5'-ribonucleotide(2-)" RELATED [ChEBI] +synonym: "a ribonucleoside 5'-phosphate" RELATED [UniProt] +synonym: "C5H8O7P" RELATED FORMULA [ChEBI] +synonym: "C5H8O7PR" RELATED FORMULA [ChEBI] +synonym: "nucleoside monophosphate anion" RELATED [ChEBI] +synonym: "nucleoside monophosphate anions" RELATED [ChEBI] +synonym: "nucleoside monophosphate dianion" RELATED [ChEBI] +synonym: "nucleoside monophosphate dianions" RELATED [ChEBI] +synonym: "O[C@@H]1[C@H](O)[C@@H](COP([O-])([O-])=O)O[C@H]1[*]" RELATED SMILES [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:17188 ! nucleoside 5'-monophosphate + +[Term] +id: CHEBI:58048 +name: L-asparagine zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of L-asparagine arising from transfer of a proton from the carboxy to the amino group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2S)-2-ammonio-3-carbamoylpropanoate" RELATED [ChEBI] +synonym: "(2S)-2-azaniumyl-3-carbamoylpropanoate" RELATED [ChEBI] +synonym: "(2S)-4-amino-2-ammonio-4-oxobutanoate" RELATED [ChEBI] +synonym: "(2S)-4-amino-2-azaniumyl-4-oxobutanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "132.053" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "132.11790" RELATED MASS [ChEBI] +synonym: "C4H8N2O3" RELATED FORMULA [ChEBI] +synonym: "DCXYFEDJOCDNAF-REOHCLBHSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-asparagine" RELATED [UniProt] +synonym: "NC(=O)C[C@H]([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +xref: MetaCyc:ASN +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_tautomer_of CHEBI:17196 ! L-asparagine + +[Term] +id: CHEBI:58065 +name: homocysteine zwitterion +namespace: chebi_ontology +def: "An amino acid zwitterion of homocysteine arising from transfer of a proton from the carboxy to the amino group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "135.035" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "135.18500" RELATED MASS [ChEBI] +synonym: "2-ammonio-4-sulfanylbutanoate" RELATED [ChEBI] +synonym: "2-azaniumyl-4-sulfanylbutanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "[NH3+]C(CCS)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C4H9NO2S" RELATED FORMULA [ChEBI] +synonym: "FFFHZYDWPBMWHY-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H9NO2S/c5-3(1-2-8)4(6)7/h3,8H,1-2,5H2,(H,6,7)" RELATED InChI [ChEBI] +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_tautomer_of CHEBI:17230 ! homocysteine + +[Term] +id: CHEBI:58093 +name: homoserinium lactone +namespace: chebi_ontology +def: "The conjugate acid of homoserine lactone; major species at pH 7.3." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "102.056" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "102.11180" RELATED MASS [ChEBI] +synonym: "2-oxooxolan-3-aminium" EXACT IUPAC_NAME [IUPAC] +synonym: "2-oxotetrahydrofuran-3-aminium" RELATED [IUPAC] +synonym: "[NH3+]C1CCOC1=O" RELATED SMILES [ChEBI] +synonym: "C4H8NO2" RELATED FORMULA [ChEBI] +synonym: "homoserinium lactone cation" RELATED [ChEBI] +synonym: "homoserinium lactone(1+)" RELATED [ChEBI] +synonym: "InChI=1S/C4H7NO2/c5-3-1-2-7-4(3)6/h3H,1-2,5H2/p+1" RELATED InChI [ChEBI] +synonym: "QJPWUUJVYOJNMH-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:35274 ! ammonium ion +relationship: is_conjugate_acid_of CHEBI:17289 ! homoserine lactone + +[Term] +id: CHEBI:58104 +name: nucleoside triphosphate(3-) +namespace: chebi_ontology +def: "Trianion of nucleoside triphosphate arising from deprotonation of three of the four free triphosphate OH groups; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "369.926" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "385.07300" RELATED MASS [ChEBI] +synonym: "C5H9O13P3R" RELATED FORMULA [ChEBI] +synonym: "C[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP(O)([O-])=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "NTP trianion" RELATED [ChEBI] +synonym: "NTP(3-)" RELATED [ChEBI] +synonym: "nucleoside triphosphate trianion" RELATED [ChEBI] +synonym: "ribonucleoside triphosphate trianion" RELATED [ChEBI] +synonym: "ribonucleoside triphosphate(3-)" RELATED [ChEBI] +is_a: CHEBI:59724 ! ribonucleoside triphosphate oxoanion +relationship: is_conjugate_acid_of CHEBI:61557 ! nucleoside triphosphate(4-) +relationship: is_conjugate_base_of CHEBI:17326 ! nucleoside triphosphate + +[Term] +id: CHEBI:58165 +name: 3',5'-cyclic AMP(1-) +namespace: chebi_ontology +def: "An organophosphate oxoanion that is the conjugate base of 3',5'-cyclic AMP arising from deprotonation of the free phosphate OH group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "3',5'-cyclic AMP" RELATED [UniProt] +synonym: "3',5'-cyclic AMP anion" RELATED [ChEBI] +synonym: "328.045" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "328.19800" RELATED MASS [ChEBI] +synonym: "adenosine 3',5'-cyclic monophosphate" RELATED [ChEBI] +synonym: "adenosine 3',5'-cyclic monophosphate anion" RELATED [ChEBI] +synonym: "adenosine 3',5'-cyclic monophosphate(1-)" RELATED [ChEBI] +synonym: "adenosine 3',5'-phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "C10H11N5O6P" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C10H12N5O6P/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7-4(20-10)1-19-22(17,18)21-7/h2-4,6-7,10,16H,1H2,(H,17,18)(H2,11,12,13)/p-1/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "IVOMOUWHDPKRLL-KQYNXXCUSA-M" RELATED InChIKey [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@@H]1O[C@@H]2COP([O-])(=O)O[C@H]2[C@H]1O" RELATED SMILES [ChEBI] +xref: PMID:7870041 "Europe PMC" +xref: PMID:7870042 "Europe PMC" +xref: Reaxys:3720459 "Reaxys" +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:17489 ! 3',5'-cyclic AMP + +[Term] +id: CHEBI:58199 +name: L-homocysteine zwitterion +namespace: chebi_ontology +def: "An amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of L-homocysteine; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2S)-2-azaniumyl-4-sulfanylbutanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "135.035" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "135.18500" RELATED MASS [ChEBI] +synonym: "[NH3+][C@@H](CCS)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C4H9NO2S" RELATED FORMULA [ChEBI] +synonym: "FFFHZYDWPBMWHY-VKHMYHEASA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H9NO2S/c5-3(1-2-8)4(6)7/h3,8H,1-2,5H2,(H,6,7)/t3-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-homocysteine" RELATED [UniProt] +xref: MetaCyc:HOMO-CYS +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_tautomer_of CHEBI:17588 ! L-homocysteine + +[Term] +id: CHEBI:58214 +name: kanamycin A(4+) +namespace: chebi_ontology +def: "A quadruply-charged organic cation arising from protonation of the four amino groups of kanamycin A; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(1S,2R,3R,4S,6R)-4,6-diazaniumyl-3-(6-azaniumyl-6-deoxy-alpha-D-glucopyranosyloxy)-2-hydroxycyclohexyl 3-azaniumyl-3-deoxy-alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "+4" RELATED CHARGE [ChEBI] +synonym: "488.269" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "488.53040" RELATED MASS [ChEBI] +synonym: "[NH3+]C[C@H]1O[C@H](O[C@@H]2[C@@H]([NH3+])C[C@@H]([NH3+])[C@H](O[C@H]3O[C@H](CO)[C@@H](O)[C@H]([NH3+])[C@H]3O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "C18H40N4O11" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C18H36N4O11/c19-2-6-10(25)12(27)13(28)18(30-6)33-16-5(21)1-4(20)15(14(16)29)32-17-11(26)8(22)9(24)7(3-23)31-17/h4-18,23-29H,1-3,19-22H2/p+4/t4-,5+,6-,7-,8+,9-,10-,11-,12+,13-,14-,15+,16-,17-,18-/m1/s1" RELATED InChI [ChEBI] +synonym: "kanamycin A" RELATED [UniProt] +synonym: "kanamycin A tetracation" RELATED [ChEBI] +synonym: "SBUJHOSQTJFQJX-NOAMYHISSA-R" RELATED InChIKey [ChEBI] +is_a: CHEBI:25697 ! organic cation +relationship: has_role CHEBI:76969 ! bacterial metabolite +relationship: is_conjugate_acid_of CHEBI:17630 ! kanamycin A + +[Term] +id: CHEBI:58231 +name: CTP(3-) +namespace: chebi_ontology +def: "A ribonucleoside triphosphate oxoanion arising from deprotonation of three of the four triphosphate OH groups of cytidine 5'-triphosphate; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "479.961" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "480.13250" RELATED MASS [ChEBI] +synonym: "5'-O-[({[(hydroxyphosphinato)oxy]phosphinato}oxy)phosphinato]cytidine" EXACT IUPAC_NAME [IUPAC] +synonym: "C9H13N3O14P3" RELATED FORMULA [ChEBI] +synonym: "CTP trianion" RELATED [ChEBI] +synonym: "CTP(3-)" EXACT [UniProt] +synonym: "cytidine 5'-triphosphate" RELATED [ChEBI] +synonym: "cytidine 5'-triphosphate trianion" RELATED [ChEBI] +synonym: "cytidine 5'-triphosphate(3-)" RELATED [ChEBI] +synonym: "InChI=1S/C9H16N3O14P3/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H2,10,11,15)(H2,16,17,18)/p-3/t4-,6-,7-,8-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(=O)OP(O)([O-])=O)[C@@H](O)[C@H]2O)c(=O)n1" RELATED SMILES [ChEBI] +synonym: "PCDQPRRSZKQHHS-XVFCMESISA-K" RELATED InChIKey [ChEBI] +is_a: CHEBI:59724 ! ribonucleoside triphosphate oxoanion +relationship: is_conjugate_base_of CHEBI:17677 ! CTP + +[Term] +id: CHEBI:58340 +name: O-acetyl-L-serine zwitterion +namespace: chebi_ontology +def: "An amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of O-acetyl-L-serine; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2S)-3-acetoxy-2-ammoniopropanoate" RELATED [IUPAC] +synonym: "(2S)-3-acetoxy-2-azaniumylpropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "147.053" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "147.12930" RELATED MASS [ChEBI] +synonym: "C5H9NO4" RELATED FORMULA [ChEBI] +synonym: "CC(=O)OC[C@H]([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C5H9NO4/c1-3(7)10-2-4(6)5(8)9/h4H,2,6H2,1H3,(H,8,9)/t4-/m0/s1" RELATED InChI [ChEBI] +synonym: "O-acetyl-L-serine" RELATED [UniProt] +synonym: "VZXPDPZARILFQX-BYPYZUCNSA-N" RELATED InChIKey [ChEBI] +xref: MetaCyc:ACETYLSERINE +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_tautomer_of CHEBI:17981 ! O-acetyl-L-serine + +[Term] +id: CHEBI:58342 +name: acyl-CoA(4-) +namespace: chebi_ontology +def: "An acyl-CoA oxoanion arising from deprotonation of the phosphate and diphosphate OH groups of any acyl-CoA; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-4" RELATED CHARGE [ChEBI] +synonym: "790.071" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "790.50500" RELATED MASS [ChEBI] +synonym: "an acyl-CoA" RELATED [UniProt] +synonym: "C22H31N7O17P3SR" RELATED FORMULA [ChEBI] +synonym: "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC([*])=O" RELATED SMILES [ChEBI] +is_a: CHEBI:58946 ! acyl-CoA oxoanion +relationship: is_conjugate_base_of CHEBI:17984 ! acyl-CoA + +[Term] +id: CHEBI:58359 +name: L-glutamine zwitterion +namespace: chebi_ontology +def: "An amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of L-glutamine; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2S)-5-amino-2-ammonio-5-oxopentanoate" RELATED [IUPAC] +synonym: "(2S)-5-amino-2-azaniumyl-5-oxopentanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "146.069" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "146.14450" RELATED MASS [ChEBI] +synonym: "C5H10N2O3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/t3-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-glutamine" RELATED [UniProt] +synonym: "NC(=O)CC[C@H]([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "ZDXPYRJPNDTMRX-VKHMYHEASA-N" RELATED InChIKey [ChEBI] +xref: MetaCyc:GLN +xref: PMID:17190852 "Europe PMC" +is_a: CHEBI:62031 ! polar amino acid zwitterion +relationship: has_role CHEBI:25212 ! metabolite +relationship: is_tautomer_of CHEBI:18050 ! L-glutamine + +[Term] +id: CHEBI:58389 +name: trimethylammonium +namespace: chebi_ontology +def: "An ammonium ion that is the conjugate acid of trimethylamine, obtained via protonation of the nitrogen; major species at pH 7.3." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "60.081" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "60.11820" RELATED MASS [ChEBI] +synonym: "C3H10N" RELATED FORMULA [ChEBI] +synonym: "C[NH+](C)C" RELATED SMILES [ChEBI] +synonym: "GETQZCLCWQTVFV-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C3H9N/c1-4(2)3/h1-3H3/p+1" RELATED InChI [ChEBI] +synonym: "N,N-dimethylmethanaminium" EXACT IUPAC_NAME [IUPAC] +synonym: "trimethylamine" RELATED [UniProt] +synonym: "trimethylammonium cation" RELATED [ChEBI] +synonym: "trimethylazanium" RELATED [ChEBI] +synonym: "trimethylazanium cation" RELATED [ChEBI] +xref: MetaCyc:TRIMETHYLAMINE +xref: Reaxys:16709444 "Reaxys" +is_a: CHEBI:35274 ! ammonium ion +relationship: has_role CHEBI:76967 ! human xenobiotic metabolite +relationship: is_conjugate_acid_of CHEBI:18139 ! trimethylamine + +[Term] +id: CHEBI:58395 +name: myricetin(1-) +namespace: chebi_ontology +def: "A flavonol oxoanion that is the conjugate base of myricetin, arising from selective deprotonation of the 3-hydroxy group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "317.030" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "317.22720" RELATED MASS [ChEBI] +synonym: "5,7-dihydroxy-4-oxo-2-(3,4,5-trihydroxyphenyl)-4H-chromen-3-olate" EXACT IUPAC_NAME [IUPAC] +synonym: "C15H9O8" RELATED FORMULA [ChEBI] +synonym: "IKMDFBPHZNJCSN-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C15H10O8/c16-6-3-7(17)11-10(4-6)23-15(14(22)13(11)21)5-1-8(18)12(20)9(19)2-5/h1-4,16-20,22H/p-1" RELATED InChI [ChEBI] +synonym: "myricetin" RELATED [UniProt] +synonym: "Oc1cc(O)c2c(c1)oc(-c1cc(O)c(O)c(O)c1)c([O-])c2=O" RELATED SMILES [ChEBI] +xref: Beilstein:3710398 "Beilstein" +xref: MetaCyc:MYRICETIN +is_a: CHEBI:58588 ! flavonol oxoanion +relationship: is_conjugate_base_of CHEBI:18152 ! myricetin + +[Term] +id: CHEBI:58429 +name: alpha,alpha-trehalose 6-phosphate(2-) +namespace: chebi_ontology +def: "Dianion of alpha,alpha-trehalose 6-phosphate." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "420.067" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "420.26050" RELATED MASS [ChEBI] +synonym: "alpha,alpha-trehalose 6-phosphate" RELATED [UniProt] +synonym: "alpha-D-glucopyranosyl 6-O-phosphonato-alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "C12H21O14P" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C12H23O14P/c13-1-3-5(14)7(16)9(18)11(24-3)26-12-10(19)8(17)6(15)4(25-12)2-23-27(20,21)22/h3-19H,1-2H2,(H2,20,21,22)/p-2/t3-,4-,5-,6-,7+,8+,9-,10-,11-,12-/m1/s1" RELATED InChI [ChEBI] +synonym: "LABSPYBHMPDTEL-LIZSDCNHSA-L" RELATED InChIKey [ChEBI] +synonym: "OC[C@H]1O[C@H](O[C@H]2O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +xref: Beilstein:3744918 "Beilstein" +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: has_functional_parent CHEBI:16551 ! alpha,alpha-trehalose +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: is_conjugate_base_of CHEBI:18283 ! alpha,alpha-trehalose 6-phosphate + +[Term] +id: CHEBI:58432 +name: histaminium +namespace: chebi_ontology +def: "An ammonium ion that is the conjugate acid of histamine protonated on the side-chain nitrogen." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "112.087" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "112.15300" RELATED MASS [ChEBI] +synonym: "2-(1H-imidazol-4-yl)ethanaminium" EXACT IUPAC_NAME [IUPAC] +synonym: "[NH3+]CCc1c[nH]cn1" RELATED SMILES [ChEBI] +synonym: "C5H10N3" RELATED FORMULA [ChEBI] +synonym: "histamine" RELATED [UniProt] +synonym: "histaminium cation" RELATED [ChEBI] +synonym: "InChI=1S/C5H9N3/c6-2-1-5-3-7-4-8-5/h3-4H,1-2,6H2,(H,7,8)/p+1" RELATED InChI [ChEBI] +synonym: "NTYJJOPFIAHURM-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:35274 ! ammonium ion +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:18295 ! histamine + +[Term] +id: CHEBI:58464 +name: nucleoside 3',5'-cyclic phosphate anion +namespace: chebi_ontology +def: "The conjugate base of a nucleoside 3',5'-cyclic phosphate." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "176.995" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "177.07190" RELATED MASS [ChEBI] +synonym: "[O-]P1(=O)OC[C@H]2O[C@@H]([*])[C@H]([*])[C@@H]2O1" RELATED SMILES [ChEBI] +synonym: "a nucleoside 3',5'-cyclic phosphate" RELATED [UniProt] +synonym: "C5H6O5PR2" RELATED FORMULA [ChEBI] +synonym: "nucleoside 3',5'-cyclic phosphate anions" RELATED [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:18375 ! nucleoside 3',5'-cyclic phosphate + +[Term] +id: CHEBI:58549 +name: kanamycin B(5+) +namespace: chebi_ontology +def: "An organic cation that is the pentacation of kanamycin B, obtained by protonation of the primary amino groups." [] +subset: 3_STAR +synonym: "(1R,2S,3S,4R,6S)-4,6-diammmonio-3-(3-ammonio-3-deoxy-alpha-D-glucopyranosyloxy)-2-hydroxycyclohexyl 2,6-diammmonio-2,6-dideoxy-alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "+5" RELATED CHARGE [ChEBI] +synonym: "488.293" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "488.55360" RELATED MASS [ChEBI] +synonym: "[NH3+]C[C@H]1O[C@H](O[C@@H]2[C@@H]([NH3+])C[C@@H]([NH3+])[C@H](O[C@H]3O[C@H](CO)[C@@H](O)[C@H]([NH3+])[C@H]3O)[C@H]2O)[C@H]([NH3+])[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "C18H42N5O10" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C18H37N5O10/c19-2-6-11(26)12(27)9(23)17(30-6)32-15-4(20)1-5(21)16(14(15)29)33-18-13(28)8(22)10(25)7(3-24)31-18/h4-18,24-29H,1-3,19-23H2/p+5/t4-,5+,6+,7+,8-,9+,10+,11+,12+,13+,14-,15+,16-,17+,18+/m0/s1" RELATED InChI [ChEBI] +synonym: "kanamycin B" RELATED [UniProt] +synonym: "SKKLOUVUUNMCJE-FQSMHNGLSA-S" RELATED InChIKey [ChEBI] +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:35274 ! ammonium ion +relationship: is_conjugate_acid_of CHEBI:28098 ! kanamycin B + +[Term] +id: CHEBI:58588 +name: flavonol oxoanion +namespace: chebi_ontology +def: "The conjugate base of a flavonol compound." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "232.016" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "232.19050" RELATED MASS [ChEBI] +synonym: "[O-]c1c(oc2cc([*])cc([*])c2c1=O)-c1cc([*])c([*])c([*])c1" RELATED SMILES [ChEBI] +synonym: "a flavonol oxoanion" RELATED [UniProt] +synonym: "C15H4O3R5" RELATED FORMULA [ChEBI] +synonym: "flavonolate" RELATED [ChEBI] +xref: MetaCyc:Flavonols +is_a: CHEBI:25696 ! organic anion +relationship: is_conjugate_base_of CHEBI:28802 ! flavonols + +[Term] +id: CHEBI:58633 +name: L-homoserine lactone(1+) +namespace: chebi_ontology +def: "An ammonium ion resulting from the protonation of the amino group of L-homoserine lactone. The major species at pH 7.3." [] +subset: 3_STAR +synonym: "(3S)-2-oxotetrahydrofuran-3-aminium" EXACT IUPAC_NAME [IUPAC] +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "102.056" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "102.11180" RELATED MASS [ChEBI] +synonym: "[NH3+][C@H]1CCOC1=O" RELATED SMILES [ChEBI] +synonym: "C4H8NO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H7NO2/c5-3-1-2-7-4(3)6/h3H,1-2,5H2/p+1/t3-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-homoserine lactone" RELATED [UniProt] +synonym: "QJPWUUJVYOJNMH-VKHMYHEASA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:35274 ! ammonium ion +relationship: is_conjugate_acid_of CHEBI:30655 ! L-homoserine lactone + +[Term] +id: CHEBI:58722 +name: N-acetylmuramate 6-phosphate +namespace: chebi_ontology +def: "An organophosphate oxoanion that is a trianion arising from deprotonation of the phosphate and carboxylic acid functions of N-acetylmuramic acid 6-phosphate." [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "2-acetamido-3-O-[(1R)-1-carboxylatoethyl]-2-deoxy-6-O-phosphonato-D-glucopyranose" RELATED [IUPAC] +synonym: "2-acetamido-3-O-[(1R)-1-carboxylatoethyl]-2-deoxy-D-glucopyranose 6-phosphate" EXACT IUPAC_NAME [IUPAC] +synonym: "370.054" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "370.22650" RELATED MASS [ChEBI] +synonym: "C11H17NO11P" RELATED FORMULA [ChEBI] +synonym: "C[C@@H](O[C@H]1[C@H](O)[C@@H](COP([O-])([O-])=O)OC(O)[C@@H]1NC(C)=O)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C11H20NO11P/c1-4(10(15)16)22-9-7(12-5(2)13)11(17)23-6(8(9)14)3-21-24(18,19)20/h4,6-9,11,14,17H,3H2,1-2H3,(H,12,13)(H,15,16)(H2,18,19,20)/p-3/t4-,6-,7-,8-,9-,11?/m1/s1" RELATED InChI [ChEBI] +synonym: "N-acetyl-D-muramate 6-phosphate" RELATED [UniProt] +synonym: "NMEMTQKUEVNSPV-MKFCKLDKSA-K" RELATED InChIKey [ChEBI] +is_a: CHEBI:35757 ! monocarboxylic acid anion +is_a: CHEBI:58945 ! organophosphate oxoanion +is_a: CHEBI:63551 ! carbohydrate acid derivative anion +relationship: is_conjugate_base_of CHEBI:47968 ! N-acetylmuramic acid 6-phosphate + +[Term] +id: CHEBI:58805 +name: c-di-GMP(2-) +namespace: chebi_ontology +def: "Dianion of cyclic di-3',5'-guanylic acid." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "688.079" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "688.39480" RELATED MASS [ChEBI] +synonym: "C20H22N10O14P2" RELATED FORMULA [ChEBI] +synonym: "cyclic di-3',5'-guanylate" RELATED [UniProt] +synonym: "cyclic di-3',5'-guanylate" RELATED [ChEBI] +synonym: "cyclic di-3',5'-guanylate dianion" RELATED [ChEBI] +synonym: "InChI=1S/C20H24N10O14P2/c21-19-25-13-7(15(33)27-19)23-3-29(13)17-9(31)11-5(41-17)1-39-45(35,36)44-12-6(2-40-46(37,38)43-11)42-18(10(12)32)30-4-24-8-14(30)26-20(22)28-16(8)34/h3-6,9-12,17-18,31-32H,1-2H2,(H,35,36)(H,37,38)(H3,21,25,27,33)(H3,22,26,28,34)/p-2/t5-,6-,9-,10-,11-,12-,17-,18-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@@H]2COP([O-])(=O)O[C@@H]3[C@@H](COP([O-])(=O)O[C@H]2[C@H]1O)O[C@H]([C@@H]3O)n1cnc2c1nc(N)[nH]c2=O" RELATED SMILES [ChEBI] +synonym: "PKFDLKSEZWEFGL-MHARETSRSA-L" RELATED InChIKey [ChEBI] +xref: Beilstein:9981635 "Beilstein" +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:49537 ! c-di-GMP + +[Term] +id: CHEBI:58945 +name: organophosphate oxoanion +namespace: chebi_ontology +def: "An organic phosphoric acid derivative in which one or more oxygen atoms of the phosphate group(s) has been deprotonated." [] +subset: 3_STAR +synonym: "organophosphate oxoanions" RELATED [ChEBI] +is_a: CHEBI:25696 ! organic anion +is_a: CHEBI:26079 ! phosphoric acid derivative + +[Term] +id: CHEBI:58946 +name: acyl-CoA oxoanion +namespace: chebi_ontology +def: "Any acyl coenzyme A thioester in which one or more of the phosphate and/or diphosphate groups has been deprotonated." [] +subset: 3_STAR +synonym: "acyl-CoA oxoanions" RELATED [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion + +[Term] +id: CHEBI:58951 +name: short-chain fatty acid anion +namespace: chebi_ontology +def: "Any fatty acid anion obtained by removal of a proton from the carboxy group of a short-chain fatty acid (chain length of less than C6)." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "43.990" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[O-]C([*])=O" RELATED SMILES [ChEBI] +synonym: "a short-chain fatty acid" RELATED [UniProt] +synonym: "CO2R" RELATED FORMULA [ChEBI] +synonym: "short-chain fatty acid anions" RELATED [ChEBI] +is_a: CHEBI:28868 ! fatty acid anion +relationship: is_conjugate_base_of CHEBI:26666 ! short-chain fatty acid + +[Term] +id: CHEBI:58953 +name: saturated fatty acid anion +namespace: chebi_ontology +def: "Any fatty acid anion in which there is no C-C unsaturation." [] +subset: 3_STAR +synonym: "a saturated fatty acid" RELATED [UniProt] +synonym: "saturated fatty acid anions" RELATED [ChEBI] +is_a: CHEBI:28868 ! fatty acid anion + +[Term] +id: CHEBI:58954 +name: straight-chain saturated fatty acid anion +namespace: chebi_ontology +def: "Any saturated fatty acid anion lacking a carbon side-chain." [] +subset: 3_STAR +synonym: "straight-chain saturated fatty acid anions" RELATED [ChEBI] +is_a: CHEBI:58953 ! saturated fatty acid anion +relationship: is_conjugate_base_of CHEBI:39418 ! straight-chain saturated fatty acid + +[Term] +id: CHEBI:59062 +name: polymyxin +namespace: chebi_ontology +def: "Polymyxins are antibiotics with a general structure consisting of a cyclic peptide with a long hydrophobic tail. They disrupt the structure of the bacterial cell membrane by interacting with its phospholipids. Polymyxins are produced by the Gram-positive bacterium Bacillus polymyxa and are selectively toxic for Gram-negative bacteria." [] +subset: 3_STAR +synonym: "polymixin" RELATED [ChEBI] +synonym: "polymycin" RELATED [ChEBI] +synonym: "polymyxins" RELATED [ChEBI] +is_a: CHEBI:24533 ! heterodetic cyclic peptide +is_a: CHEBI:46895 ! lipopeptide +relationship: has_role CHEBI:33282 ! antibacterial agent + +[Term] +id: CHEBI:59063 +name: polymyxin B2 +namespace: chebi_ontology +def: "A polymyxin having a 6-methylheptanoyl group at the amino terminus." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1188.734" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "1189.45010" RELATED MASS [ChEBI] +synonym: "4,10-anhydro[N-(6-methylheptanoyl)-L-2,4-diaminobutanoyl-L-threonyl-L-2,4-diaminobutanoyl-L-2,4-diaminobutanoyl-L-2,4-diaminobutanoyl-D-phenylalanyl-L-leucyl-L-2,4-diaminobutanoyl-L-2,4-diaminobutanoyl-L-threonine]" EXACT IUPAC_NAME [IUPAC] +synonym: "C55H96N16O13" RELATED FORMULA [ChEBI] +synonym: "CC(C)CCCCC(=O)N[C@@H](CCN)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CCN)C(=O)N[C@H]1CCNC(=O)[C@@H](NC(=O)[C@H](CCN)NC(=O)[C@H](CCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](Cc2ccccc2)NC(=O)[C@H](CCN)NC1=O)[C@@H](C)O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C55H96N16O13/c1-30(2)12-10-11-15-43(74)62-35(16-22-56)50(79)71-45(33(6)73)55(84)67-38(19-25-59)47(76)66-40-21-27-61-54(83)44(32(5)72)70-51(80)39(20-26-60)64-46(75)36(17-23-57)65-52(81)41(28-31(3)4)68-53(82)42(29-34-13-8-7-9-14-34)69-48(77)37(18-24-58)63-49(40)78/h7-9,13-14,30-33,35-42,44-45,72-73H,10-12,15-29,56-60H2,1-6H3,(H,61,83)(H,62,74)(H,63,78)(H,64,75)(H,65,81)(H,66,76)(H,67,84)(H,68,82)(H,69,77)(H,70,80)(H,71,79)/t32-,33-,35+,36+,37+,38+,39+,40+,41+,42-,44+,45+/m1/s1" RELATED InChI [ChEBI] +synonym: "SGPYLFWAQBAXCZ-RUDZPDEXSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:8185631 "Beilstein" +xref: CAS:1404-26-8 "KEGG COMPOUND" +xref: KEGG:C11612 +xref: KEGG:D08401 +xref: LIPID_MAPS_instance:LMPK14000008 "LIPID MAPS" +xref: PMID:13058849 "Europe PMC" +is_a: CHEBI:59062 ! polymyxin + +[Term] +id: CHEBI:59163 +name: biomarker +namespace: chebi_ontology +def: "A substance used as an indicator of a biological state." [] +subset: 3_STAR +synonym: "biological marker" RELATED [ChEBI] +is_a: CHEBI:47867 ! indicator + +[Term] +id: CHEBI:59174 +name: hapten +namespace: chebi_ontology +def: "Any substance capable of eliciting an immune response only when attached to a large carrier such as a protein. Examples include dinitrophenols; oligosaccharides; peptides; and heavy metals." [] +subset: 3_STAR +synonym: "haptens" RELATED [ChEBI] +xref: PMID:17875790 "Europe PMC" +xref: PMID:17986299 "Europe PMC" +xref: PMID:19101624 "Europe PMC" +xref: PMID:291959 "Europe PMC" +xref: PMID:3782019 "Europe PMC" +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:59202 +name: straight-chain fatty acid +namespace: chebi_ontology +def: "Any fatty acid whose skeletal carbon atoms form an unbranched open chain." [] +subset: 3_STAR +synonym: "straight-chain fatty acids" RELATED [ChEBI] +is_a: CHEBI:35366 ! fatty acid +relationship: is_conjugate_acid_of CHEBI:59203 ! straight-chain fatty acid anion + +[Term] +id: CHEBI:59203 +name: straight-chain fatty acid anion +namespace: chebi_ontology +def: "A fatty acid anion formed by deprotonation of the carboxylic acid functional group of a straight-chain fatty acid." [] +subset: 3_STAR +synonym: "straight-chain FA anion" RELATED [ChEBI] +synonym: "straight-chain FA anions" RELATED [ChEBI] +synonym: "straight-chain fatty acid anions" RELATED [ChEBI] +is_a: CHEBI:28868 ! fatty acid anion +relationship: is_conjugate_base_of CHEBI:59202 ! straight-chain fatty acid + +[Term] +id: CHEBI:59517 +name: DNA synthesis inhibitor +namespace: chebi_ontology +def: "Any substance that inhibits the synthesis of DNA." [] +subset: 3_STAR +synonym: "DNA synthesis inhibitors" RELATED [ChEBI] +is_a: CHEBI:76932 ! pathway inhibitor + +[Term] +id: CHEBI:59554 +name: medium-chain fatty acid +namespace: chebi_ontology +def: "Any fatty acid with a chain length of between C6 and C12." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "44.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "45.01740" RELATED MASS [ChEBI] +synonym: "CHO2R" RELATED FORMULA [ChEBI] +synonym: "MCFA" RELATED [ChEBI] +synonym: "MCFAs" RELATED [ChEBI] +synonym: "medium-chain fatty acids" RELATED [ChEBI] +synonym: "OC([*])=O" RELATED SMILES [ChEBI] +is_a: CHEBI:35366 ! fatty acid +relationship: is_conjugate_acid_of CHEBI:59558 ! medium-chain fatty acid anion + +[Term] +id: CHEBI:59558 +name: medium-chain fatty acid anion +namespace: chebi_ontology +def: "A fatty acid anion resulting from the deprotonation of the carboxylic acid moiety of a medium-chain fatty acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "43.990" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[O-]C([*])=O" RELATED SMILES [ChEBI] +synonym: "a medium chain fatty acid" RELATED [UniProt] +synonym: "CO2R" RELATED FORMULA [ChEBI] +synonym: "MCFA anion" RELATED [ChEBI] +synonym: "MCFA anions" RELATED [ChEBI] +synonym: "medium-chain FA anion" RELATED [ChEBI] +synonym: "medium-chain FA anions" RELATED [ChEBI] +synonym: "medium-chain fatty acid anions" RELATED [ChEBI] +is_a: CHEBI:28868 ! fatty acid anion +relationship: is_conjugate_base_of CHEBI:59554 ! medium-chain fatty acid + +[Term] +id: CHEBI:59561 +name: diamino acid anion +namespace: chebi_ontology +def: "An organic anion that is the conjugate base of diamino acid." [] +subset: 3_STAR +synonym: "diamino acid anions" RELATED [ChEBI] +is_a: CHEBI:25696 ! organic anion +relationship: is_conjugate_base_of CHEBI:35987 ! diamino acid + +[Term] +id: CHEBI:59640 +name: N-acetylglucosamine +namespace: chebi_ontology +def: "An N-acylglucosamine where the N-acyl group is specified as acetyl." [] +subset: 3_STAR +synonym: "N-acetylglucosamines" RELATED [ChEBI] +xref: PMID:18499511 "Europe PMC" +is_a: CHEBI:21638 ! N-acylglucosamine +relationship: has_role CHEBI:78366 ! EC 2.7.1.1 (hexokinase) inhibitor +property_value: MCO:0000190 "GlcNAc" xsd:string + +[Term] +id: CHEBI:59644 +name: oxo fatty acid +namespace: chebi_ontology +def: "Any fatty acid containing at least one aldehydic or ketonic group in addition to the carboxylic acid group." [] +subset: 3_STAR +synonym: "oxo fatty acids" RELATED [ChEBI] +xref: PMID:6434570 "Europe PMC" +xref: PMID:8454196 "Europe PMC" +xref: PMID:8638935 "Europe PMC" +is_a: CHEBI:25754 ! oxo carboxylic acid +is_a: CHEBI:35366 ! fatty acid + +[Term] +id: CHEBI:59683 +name: antipruritic drug +namespace: chebi_ontology +def: "A drug, usually applied topically, that relieves pruritus (itching)." [] +subset: 3_STAR +synonym: "anti-itching drug" RELATED [ChEBI] +synonym: "anti-itching drugs" RELATED [ChEBI] +synonym: "antipruritic agent" RELATED [ChEBI] +synonym: "antipruritic agents" RELATED [ChEBI] +synonym: "antipruritic drugs" RELATED [ChEBI] +is_a: CHEBI:50177 ! dermatologic drug + +[Term] +id: CHEBI:59698 +name: phosphoric acids +namespace: chebi_ontology +def: "Compounds containing one or more phosphoric acid units." [] +subset: 3_STAR +is_a: CHEBI:33457 ! phosphorus oxoacid + +[Term] +id: CHEBI:59724 +name: ribonucleoside triphosphate oxoanion +namespace: chebi_ontology +def: "An organophosphate anion resulting from deprotonation of at least one of the acidic hydroxy groups from the triphosphate moiety of a nucleoside triphosphate." [] +subset: 3_STAR +synonym: "ribonucleoside triphosphate anion" RELATED [ChEBI] +synonym: "ribonucleoside triphosphate anions" RELATED [ChEBI] +synonym: "ribonucleoside triphosphate oxoanions" RELATED [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion + +[Term] +id: CHEBI:59740 +name: nucleophilic reagent +namespace: chebi_ontology +def: "A reagent that forms a bond to its reaction partner (the electrophile) by donating both bonding electrons." [] +subset: 3_STAR +synonym: "nucleophile" RELATED [ChEBI] +synonym: "nucleophiles" RELATED [ChEBI] +synonym: "nucleophilic reagents" RELATED [ChEBI] +is_a: CHEBI:33893 ! reagent +is_a: CHEBI:39144 ! Lewis base + +[Term] +id: CHEBI:5975 +name: iron chelate +namespace: chebi_ontology +subset: 2_STAR +synonym: "Iron chelate" EXACT [KEGG_COMPOUND] +xref: KEGG:C06704 +is_a: CHEBI:33892 ! iron coordination entity + +[Term] +id: CHEBI:59769 +name: acetal +namespace: chebi_ontology +def: "An organooxygen compound having the structure RR'C(OR'')(OR''') (R'', R''' =/= H). Mixed acetals have R'' and R''' groups which differ." [] +subset: 3_STAR +synonym: "acetals" RELATED [ChEBI] +is_a: CHEBI:36963 ! organooxygen compound + +[Term] +id: CHEBI:59770 +name: cyclic acetal +namespace: chebi_ontology +def: "An acetal in the molecule of which the acetal carbon and one or both oxygen atoms thereon are members of a ring." [] +subset: 3_STAR +synonym: "cyclic acetals" RELATED [ChEBI] +is_a: CHEBI:59769 ! acetal + +[Term] +id: CHEBI:59772 +name: hemiketal +namespace: chebi_ontology +def: "A hemiacetal having the structure RR'C(OH)R'' (R, R', R'' =/= H), derived from a ketone by formal addition of an alcohol to the carbonyl group." [] +subset: 3_STAR +synonym: "hemiketals" RELATED [ChEBI] +is_a: CHEBI:5653 ! hemiacetal + +[Term] +id: CHEBI:59777 +name: ketal +namespace: chebi_ontology +def: "An acetal of formula R2C(OR)2 (R =/= H) derived from a ketone by replacement of the oxo group by two hydrocarbyloxy groups. The class name 'ketals', once abandoned by IUPAC, has been reinstated as a subclass of acetals." [] +subset: 3_STAR +synonym: "ketals" RELATED [ChEBI] +is_a: CHEBI:59769 ! acetal + +[Term] +id: CHEBI:59779 +name: cyclic ketal +namespace: chebi_ontology +def: "A ketal in the molecule of which the ketal carbon and one or both oxygen atoms thereon are members of a ring." [] +subset: 3_STAR +synonym: "cyclic ketals" RELATED [ChEBI] +is_a: CHEBI:38104 ! oxacycle +is_a: CHEBI:59777 ! ketal + +[Term] +id: CHEBI:59780 +name: cyclic hemiketal +namespace: chebi_ontology +def: "A hemiacetal having the structure R2C(OH)OR (R =/= H), derived from a ketone by formal addition of an alcohol to the carbonyl group. The term 'cyclic hemiketals', once abandoned by IUPAC, has been reinstated as a subclass of hemiacetals." [] +subset: 3_STAR +synonym: "cyclic hemiketals" RELATED [ChEBI] +is_a: CHEBI:38131 ! lactol +is_a: CHEBI:59772 ! hemiketal + +[Term] +id: CHEBI:59789 +name: S-adenosyl-L-methionine zwitterion +namespace: chebi_ontology +def: "A zwitterionic tautomer of S-adenosyl-L-methionine arising from shift of the proton from the carboxy group to the amino group." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "399.145" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "399.44500" RELATED MASS [ChEBI] +synonym: "[(3S)-3-azaniumyl-3-carboxylatopropyl](5'-deoxyadenosin-5'-yl)(methyl)sulfonium" EXACT IUPAC_NAME [IUPAC] +synonym: "C15H23N6O5S" RELATED FORMULA [ChEBI] +synonym: "C[S+](CC[C@H]([NH3+])C([O-])=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/p+1/t7-,8+,10+,11+,14+,27?/m0/s1" RELATED InChI [ChEBI] +synonym: "MEFKEPWMEQBLKI-AIRLBKTGSA-O" RELATED InChIKey [ChEBI] +synonym: "S-adenosyl-L-methionine" RELATED [UniProt] +synonym: "S-adenosyl-L-methionine" RELATED [SUBMITTER] +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:26830 ! sulfonium compound +relationship: is_tautomer_of CHEBI:15414 ! S-adenosyl-L-methionine + +[Term] +id: CHEBI:59792 +name: thioacetal +namespace: chebi_ontology +def: "The sulfur analogue of 'acetal'. The term includes monothioacetals having the structure R2C(OR')(SR') (subclass monothioketals, R =/= H); and dithioacetals having the structure R2C(SR')2 (subclass dithioketals, R =/= H, R' =/= H)." [] +subset: 3_STAR +synonym: "thioacetals" RELATED [ChEBI] +is_a: CHEBI:33261 ! organosulfur compound + +[Term] +id: CHEBI:59793 +name: monothioacetal +namespace: chebi_ontology +def: "A thioacetal having the structure R2C(OR')(SR'). The term includes monothioketals, R =/= H, as a subclass." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "59.967" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "60.07500" RELATED MASS [ChEBI] +synonym: "[*]OC([*])([*])S[*]" RELATED SMILES [ChEBI] +synonym: "COSR4" RELATED FORMULA [ChEBI] +synonym: "monothioacetals" RELATED [ChEBI] +synonym: "thioacetal" RELATED [ChEBI] +is_a: CHEBI:59792 ! thioacetal + +[Term] +id: CHEBI:59814 +name: L-alpha-amino acid anion +namespace: chebi_ontology +def: "Conjugate base of an L-alpha-amino acid arising from deprotonation of the C-1 carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "73.016" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "88.08520" RELATED MASS [ChEBI] +synonym: "C2H3NO2R" RELATED FORMULA [ChEBI] +synonym: "C[C@H](N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "L-alpha-amino carboxylate" RELATED [ChEBI] +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_base_of CHEBI:15705 ! L-alpha-amino acid + +[Term] +id: CHEBI:59826 +name: progestin +namespace: chebi_ontology +def: "A synthetic progestogen." [] +subset: 3_STAR +synonym: "progestins" RELATED [ChEBI] +xref: Wikipedia:Progestin +is_a: CHEBI:50745 ! progestogen + +[Term] +id: CHEBI:59836 +name: oxo fatty acid anion +namespace: chebi_ontology +def: "A fatty acid anion carrying one or more oxo substituents" [] +subset: 3_STAR +synonym: "oxo fatty acid anions" RELATED [ChEBI] +synonym: "oxo-FA anion" RELATED [ChEBI] +synonym: "oxo-FA anions" RELATED [ChEBI] +is_a: CHEBI:28868 ! fatty acid anion + +[Term] +id: CHEBI:59869 +name: L-alpha-amino acid zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of an L-alpha-amino acid having an anionic carboxy group and a protonated amino group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "74.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[NH3+][C@@H]([*])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "an L-alpha-amino acid" RELATED [UniProt] +synonym: "C2H4NO2R" RELATED FORMULA [ChEBI] +synonym: "L-alpha-amino acid zwitterions" RELATED [ChEBI] +is_a: CHEBI:78608 ! alpha-amino acid zwitterion +relationship: is_tautomer_of CHEBI:15705 ! L-alpha-amino acid + +[Term] +id: CHEBI:59871 +name: D-alpha-amino acid zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of a D-alpha-amino acid having an anionic carboxy group and a protonated amino group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "74.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[NH3+][C@H]([*])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "a D-amino acid" RELATED [UniProt] +synonym: "C2H4NO2R" RELATED FORMULA [ChEBI] +synonym: "D-alpha-amino acid zwitterions" RELATED [ChEBI] +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_tautomer_of CHEBI:16733 ! D-alpha-amino acid + +[Term] +id: CHEBI:59876 +name: N-acyl-D-alpha-amino acid anion +namespace: chebi_ontology +def: "The conjugate base of an N-acyl-D-alpha-amino acid arising from deprotonation of the C-1 carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "100.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "100.05290" RELATED MASS [ChEBI] +synonym: "[O-]C(=O)[C@@H]([*])NC([*])=O" RELATED SMILES [ChEBI] +synonym: "a N-acyl-D-amino acid" RELATED [UniProt] +synonym: "C3H2NO3R2" RELATED FORMULA [ChEBI] +synonym: "N-acyl-D-alpha-amino acid(1-)" RELATED [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion +relationship: is_conjugate_base_of CHEBI:15778 ! N-acyl-D-amino acid + +[Term] +id: CHEBI:59999 +name: chemical substance +namespace: chebi_ontology +def: "A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types." [] +subset: 3_STAR +synonym: "Chemische Substanz" RELATED [ChEBI] +is_a: CHEBI:24431 ! chemical entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:60004 +name: mixture +namespace: chebi_ontology +def: "A mixture is a chemical substance composed of multiple molecules, at least two of which are of a different kind." [] +subset: 3_STAR +synonym: "Mischung" RELATED [ChEBI] +is_a: CHEBI:59999 ! chemical substance +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:60027 +name: polymer +namespace: chebi_ontology +def: "A polymer is a mixture, which is composed of macromolecules of different kinds and which may be differentiated by composition, length, degree of branching etc.." [] +subset: 3_STAR +synonym: "Kunststoff" RELATED [ChEBI] +synonym: "Polymer" EXACT [ChEBI] +xref: Wikipedia:Polymer +is_a: CHEBI:60004 ! mixture +relationship: has_part CHEBI:33839 ! macromolecule + +[Term] +id: CHEBI:60038 +name: flavonoid oxoanion +namespace: chebi_ontology +def: "Any anion arising from deprotonation of at least one OH group in a flavonoid compound." [] +subset: 3_STAR +synonym: "flavonoid oxoanions" RELATED [ChEBI] +is_a: CHEBI:25696 ! organic anion + +[Term] +id: CHEBI:60073 +name: N-acylneuraminate +namespace: chebi_ontology +def: "A sialic acid anion arising from deprotonation of the carboxy group of an N-acylneuraminic acid; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "293.075" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "293.22740" RELATED MASS [ChEBI] +synonym: "5-alkanamido-3,5-dideoxy-D-glycero-D-galacto-non-2-ulopyranosonate" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@]1(OC(O)(C[C@H](O)[C@H]1NC([*])=O)C([O-])=O)[C@H](O)[C@H](O)CO" RELATED SMILES [ChEBI] +synonym: "an N-acylneuraminate" RELATED [UniProt] +synonym: "C10H15NO9R" RELATED FORMULA [ChEBI] +synonym: "N-acylneuraminate cation" RELATED [ChEBI] +is_a: CHEBI:62944 ! sialic acid anion +relationship: is_conjugate_base_of CHEBI:16498 ! N-acylneuraminic acid + +[Term] +id: CHEBI:60090 +name: 7-hydroxyflavon-3-olate +namespace: chebi_ontology +def: "Conjugate base of a 7-hydroxyflavonol compound arising from selective deprotonation of the 3-hydroxy group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "249.019" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "249.19780" RELATED MASS [ChEBI] +synonym: "a 7-O-hydroxy-flavonol" RELATED [UniProt] +synonym: "C15H5O4R4" RELATED FORMULA [ChEBI] +synonym: "Oc1cc([*])c2c(c1)oc(-c1cc([*])c([*])c([*])c1)c([O-])c2=O" RELATED SMILES [ChEBI] +is_a: CHEBI:60038 ! flavonoid oxoanion +relationship: is_conjugate_base_of CHEBI:52267 ! 7-hydroxyflavonol + +[Term] +id: CHEBI:60173 +name: purine deoxyribonucleoside +namespace: chebi_ontology +def: "A deoxyribonucleoside containing a purine base." [] +subset: 3_STAR +synonym: "purine deoxyribonucleosides" RELATED [ChEBI] +is_a: CHEBI:23636 ! deoxyribonucleoside +is_a: CHEBI:26394 ! purine nucleoside + +[Term] +id: CHEBI:60240 +name: divalent metal cation +namespace: chebi_ontology +def: "A metal cation with a valence of two." [] +subset: 3_STAR +synonym: "a divalent metal cation" RELATED [UniProt] +is_a: CHEBI:25213 ! metal cation +is_a: CHEBI:64641 ! divalent inorganic cation + +[Term] +id: CHEBI:60242 +name: monovalent inorganic cation +namespace: chebi_ontology +def: "An atom or small molecule with a positive charge that does not contain carbon in covalent linkage, with a valency of one." [] +subset: 3_STAR +synonym: "a monovalent cation" RELATED [UniProt] +is_a: CHEBI:36915 ! inorganic cation + +[Term] +id: CHEBI:60248 +name: nickel ion +namespace: chebi_ontology +def: "A nickel atom having a net electric charge." [] +subset: 3_STAR +is_a: CHEBI:36914 ! inorganic ion + +[Term] +id: CHEBI:60249 +name: lead ion +namespace: chebi_ontology +def: "A lead atom having a net electric charge." [] +subset: 3_STAR +is_a: CHEBI:36914 ! inorganic ion +is_a: CHEBI:37193 ! elemental lead + +[Term] +id: CHEBI:60251 +name: guanidinium ion +namespace: chebi_ontology +def: "R = C or H. The iminium ion resulting from the protonation of one of the imine nitrogens of guanidine or its derivatives." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "130.21130" RELATED MASS [ChEBI] +synonym: "55.017" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[H][N+](C)=C(N(C)C)N(C)C" RELATED SMILES [ChEBI] +synonym: "CHN3R5" RELATED FORMULA [ChEBI] +synonym: "diaminomethaniminium ion" RELATED [ChEBI] +synonym: "diaminomethaniminium ions" RELATED [ChEBI] +synonym: "guanidinium ions" RELATED [ChEBI] +is_a: CHEBI:35286 ! iminium ion + +[Term] +id: CHEBI:60252 +name: lead cation +namespace: chebi_ontology +def: "A lead atom having a positive net electric charge." [] +subset: 3_STAR +is_a: CHEBI:25213 ! metal cation +is_a: CHEBI:60249 ! lead ion + +[Term] +id: CHEBI:60255 +name: puromycin(1+) +namespace: chebi_ontology +def: "Puromycin monoprotonated at the amino nitrogen. It is the predominant species at pH 7.3." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "3'-{[(2S)-2-ammonio-3-(4-methoxyphenyl)propanoyl]amino}-3'-deoxy-N,N-dimethyladenosine" RELATED [IUPAC] +synonym: "3'-{[(2S)-2-azaniumyl-3-(4-methoxyphenyl)propanoyl]amino}-3'-deoxy-N,N-dimethyladenosine" EXACT IUPAC_NAME [IUPAC] +synonym: "472.231" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "472.51750" RELATED MASS [ChEBI] +synonym: "C22H30N7O5" RELATED FORMULA [ChEBI] +synonym: "COc1ccc(C[C@H]([NH3+])C(=O)N[C@@H]2[C@@H](CO)O[C@H]([C@@H]2O)n2cnc3c(ncnc23)N(C)C)cc1" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C22H29N7O5/c1-28(2)19-17-20(25-10-24-19)29(11-26-17)22-18(31)16(15(9-30)34-22)27-21(32)14(23)8-12-4-6-13(33-3)7-5-12/h4-7,10-11,14-16,18,22,30-31H,8-9,23H2,1-3H3,(H,27,32)/p+1/t14-,15+,16+,18+,22+/m0/s1" RELATED InChI [ChEBI] +synonym: "puromycin" RELATED [UniProt] +synonym: "RXWNCPJZOCPEPQ-NVWDDTSBSA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:25697 ! organic cation +relationship: is_conjugate_acid_of CHEBI:17939 ! puromycin + +[Term] +id: CHEBI:60258 +name: EC 3.4.* (hydrolases acting on peptide bond) inhibitor +namespace: chebi_ontology +alt_id: CHEBI:76763 +def: "A hydrolase inhibitor that interferes with the action of any hydrolase acting on peptide bonds (peptidase), EC 3.4.*.*)." [] +subset: 3_STAR +synonym: "EC 3.4.* (hydrolase acting on peptide bond) inhibitor" RELATED [ChEBI] +synonym: "EC 3.4.* (hydrolase acting on peptide bonds) inhibitors" RELATED [ChEBI] +synonym: "EC 3.4.* (hydrolases acting on peptide bond) inhibitors" RELATED [ChEBI] +synonym: "EC 3.4.* (peptidase) inhibitor" RELATED [ChEBI] +synonym: "EC 3.4.* (peptidase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.4.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.4.* inhibitors" RELATED [ChEBI] +synonym: "inhibitor of hydrolases acting on peptide bond (EC 3.4.*)" RELATED [ChEBI] +synonym: "inhibitors of hydrolases acting on peptide bond (EC 3.4.*)" RELATED [ChEBI] +synonym: "peptidase inhibitors" RELATED [ChEBI] +synonym: "protease inhibitor" RELATED [ChEBI] +synonym: "protease inhibitors" RELATED [ChEBI] +is_a: CHEBI:76759 ! EC 3.* (hydrolase) inhibitor + +[Term] +id: CHEBI:60334 +name: peptide anion +namespace: chebi_ontology +def: "An anion formed by deprotonation of at least one peptide carboxy group." [] +subset: 3_STAR +synonym: "peptide anions" RELATED [ChEBI] +is_a: CHEBI:25696 ! organic anion + +[Term] +id: CHEBI:60466 +name: peptide zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of any peptide where the amino terminus is positively charged and the carboxy terminus is negatively charged." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "C2H4NO2R(C2H2NOR)n" RELATED FORMULA [ChEBI] +synonym: "peptide zwitterions" RELATED [ChEBI] +is_a: CHEBI:27369 ! zwitterion +relationship: is_tautomer_of CHEBI:16670 ! peptide + +[Term] +id: CHEBI:60584 +name: bicozamycin +namespace: chebi_ontology +alt_id: CHEBI:3091 +def: "A commercially important azabicyclic antibiotic obtained from Streptomyces sapporonensis. It inhibits the Rho protein of E. coli." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "302.111" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "302.28050" RELATED MASS [ChEBI] +synonym: "aizumycin" RELATED [SUBMITTER] +synonym: "bicozamicina" RELATED INN [ChemIDplus] +synonym: "Bicozamycin" EXACT [KEGG_COMPOUND] +synonym: "bicozamycin" RELATED INN [ChemIDplus] +synonym: "bicozamycine" RELATED INN [ChemIDplus] +synonym: "bicozamycinum" RELATED INN [ChemIDplus] +synonym: "Bicyclomycin" RELATED [KEGG_COMPOUND] +synonym: "C12H18N2O7" RELATED FORMULA [KEGG_COMPOUND] +synonym: "C[C@](O)(CO)[C@H](O)[C@@]12NC(=O)[C@@](O)(NC1=O)C(=C)CCO2" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C12H18N2O7/c1-6-3-4-21-12(7(16)10(2,19)5-15)9(18)13-11(6,20)8(17)14-12/h7,15-16,19-20H,1,3-5H2,2H3,(H,13,18)(H,14,17)/t7-,10-,11+,12-/m0/s1" RELATED InChI [ChEBI] +synonym: "WOUDXEYYJPOSNE-VKZDFBPFSA-N" RELATED InChIKey [ChEBI] +xref: CAS:38129-37-2 "KEGG COMPOUND" +xref: colombos:BICYCLOMYCIN +xref: KEGG:C11259 +xref: KNApSAcK:C00018850 +xref: Reaxys:566286 "Reaxys" +is_a: CHEBI:35990 ! bridged compound +is_a: CHEBI:38295 ! azabicycloalkane +relationship: has_role CHEBI:33282 ! antibacterial agent +relationship: has_role CHEBI:35441 ! antiinfective agent +relationship: has_role CHEBI:55323 ! antidiarrhoeal drug + +[Term] +id: CHEBI:60643 +name: NMDA receptor antagonist +namespace: chebi_ontology +alt_id: CHEBI:60797 +def: "Any substance that inhibits the action of N-methyl-D-aspartate (NMDA) receptors. They tend to induce a state known as dissociative anesthesia, marked by catalepsy, amnesia, and analgesia, while side effects can include hallucinations, nightmares, and confusion. Due to their psychotomimetic effects, many NMDA receptor antagonists are used as recreational drugs." [] +subset: 3_STAR +synonym: "N-methyl-D-aspartate receptor antagonist" RELATED [ChEBI] +synonym: "N-methyl-D-aspartate receptor antagonists" RELATED [ChEBI] +synonym: "NMDA receptor antagonists" RELATED [ChEBI] +synonym: "NMDAR antagonist" RELATED [ChEBI] +synonym: "NMDAR antagonists" RELATED [ChEBI] +is_a: CHEBI:60798 ! excitatory amino acid antagonist + +[Term] +id: CHEBI:60798 +name: excitatory amino acid antagonist +namespace: chebi_ontology +def: "Any substance which inhibits the action of receptors for excitatory amino acids." [] +subset: 3_STAR +synonym: "EAA receptor antagonist" RELATED [ChEBI] +synonym: "EAA receptor antagonists" RELATED [ChEBI] +synonym: "excitatory amino acid antagonists" RELATED [ChEBI] +synonym: "excitatory amino acid receptor antagonist" RELATED [ChEBI] +synonym: "excitatory amino acid receptor antagonists" RELATED [ChEBI] +is_a: CHEBI:48706 ! antagonist + +[Term] +id: CHEBI:60809 +name: adjuvant +namespace: chebi_ontology +def: "Any pharmacological or immunological agent that modifies the effect of other agents such as drugs or vaccines while having few if any direct effects when given by itself." [] +subset: 3_STAR +synonym: "adjuvants" RELATED [ChEBI] +is_a: CHEBI:52217 ! pharmaceutical + +[Term] +id: CHEBI:60895 +name: D-alpha-amino acid anion +namespace: chebi_ontology +def: "Any alpha-amino acid anion in which the parent amino acid has D-configuration." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "73.016" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "88.08520" RELATED MASS [ChEBI] +synonym: "C2H3NO2R" RELATED FORMULA [ChEBI] +synonym: "C[C@@H](N)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "D-alpha-amino acid anions" RELATED [ChEBI] +synonym: "D-alpha-amino carboxylate" RELATED [ChEBI] +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: is_conjugate_base_of CHEBI:16733 ! D-alpha-amino acid + +[Term] +id: CHEBI:60911 +name: racemate +namespace: chebi_ontology +def: "A racemate is an equimolar mixture of a pair of enantiomers." [] +subset: 3_STAR +synonym: "melange racemique" RELATED [ChEBI] +synonym: "racemates" RELATED [ChEBI] +synonym: "racemic mixture" RELATED [ChEBI] +is_a: CHEBI:60004 ! mixture + +[Term] +id: CHEBI:60926 +name: amino monosaccharide +namespace: chebi_ontology +def: "Any amino sugar that is a monosaccharide in which one alcoholic hydroxy group is replaced by an amino group." [] +subset: 3_STAR +synonym: "amino monosaccharides" RELATED [ChEBI] +is_a: CHEBI:28963 ! amino sugar + +[Term] +id: CHEBI:61015 +name: nephrotoxin +namespace: chebi_ontology +def: "A poison that interferes with the function of the kidneys." [] +subset: 3_STAR +synonym: "nephrotoxins" RELATED [ChEBI] +is_a: CHEBI:64909 ! poison + +[Term] +id: CHEBI:6104 +name: kanamycin +namespace: chebi_ontology +def: "Kanamycin is a naturally occurring antibiotic complex from Streptomyces kanamyceticus that consists of several components: kanamycin A, the major component (also usually designated as kanamycin), and kanamycins B, C, D and X the minor components." [] +subset: 3_STAR +synonym: "kanamicin" RELATED [ChEBI] +synonym: "Kanamycin" EXACT [KEGG_COMPOUND] +xref: Beilstein:8189165 "Beilstein" +xref: Beilstein:8399726 "Beilstein" +xref: CAS:8063-07-8 "KEGG COMPOUND" +xref: colombos:KANAMYCIN +xref: colombos:KANAMYCIN\:+UNKNOWNΒ΅g/ml +xref: KEGG:C00304 +is_a: CHEBI:24951 ! kanamycins +relationship: has_part CHEBI:17630 ! kanamycin A +relationship: has_part CHEBI:28098 ! kanamycin B +relationship: has_part CHEBI:28185 ! kanamycin C +relationship: has_part CHEBI:72797 ! kanamycin X +relationship: has_part CHEBI:73079 ! kanamycin D + +[Term] +id: CHEBI:61073 +name: oxygen radical +namespace: chebi_ontology +def: "An inorganic radical in which a free electron resides on one or more oxygen atoms of an oxygen species." [] +subset: 3_STAR +synonym: "oxygen radicals" RELATED [ChEBI] +is_a: CHEBI:26523 ! reactive oxygen species +is_a: CHEBI:36871 ! inorganic radical + +[Term] +id: CHEBI:61078 +name: purine nucleoside bisphosphate +namespace: chebi_ontology +def: "A nucleoside bisphosphate that has a purine nucleobase." [] +subset: 3_STAR +synonym: "purine nucleoside bisphosphates" RELATED [ChEBI] +is_a: CHEBI:26401 ! purines +is_a: CHEBI:37123 ! nucleoside bisphosphate + +[Term] +id: CHEBI:61079 +name: ribonucleoside bisphosphate +namespace: chebi_ontology +def: "A nucleoside bisphosphate where sugar of the nucleoside is ribose." [] +subset: 3_STAR +synonym: "ribonucleoside bisphosphates" RELATED [ChEBI] +is_a: CHEBI:37123 ! nucleoside bisphosphate + +[Term] +id: CHEBI:61115 +name: EC 3.5.1.98 (histone deacetylase) inhibitor +namespace: chebi_ontology +def: "An EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor that interferes with the function of histone deacetylase (EC 3.5.1.98)." [] +subset: 3_STAR +synonym: "EC 3.5.1.98 (histone deacetylase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.5.1.98 inhibitor" RELATED [ChEBI] +synonym: "EC 3.5.1.98 inhibitors" RELATED [ChEBI] +synonym: "HDAC inhibitor" RELATED [ChEBI] +synonym: "HDAC inhibitors" RELATED [ChEBI] +synonym: "HDACi" RELATED [ChEBI] +synonym: "HDACis" RELATED [ChEBI] +synonym: "HDI" RELATED [ChEBI] +synonym: "HDIs" RELATED [ChEBI] +synonym: "histone amidohydrolase inhibitor" RELATED [ChEBI] +synonym: "histone amidohydrolase inhibitors" RELATED [ChEBI] +synonym: "histone deacetylase (EC 3.5.1.98) inhibitor" RELATED [ChEBI] +synonym: "histone deacetylase (EC 3.5.1.98) inhibitors" RELATED [ChEBI] +synonym: "histone deacetylase inhibitor" RELATED [ChEBI] +synonym: "histone deacetylase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Histone_deacetylase_inhibitor +is_a: CHEBI:76807 ! EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor + +[Term] +id: CHEBI:61120 +name: nucleobase-containing molecular entity +namespace: chebi_ontology +def: "Any compound that has a nucleobase as a part." [] +subset: 3_STAR +synonym: "nucleobase-containing compound" RELATED [SUBMITTER] +synonym: "nucleobase-containing compounds" RELATED [ChEBI] +synonym: "nucleobase-containing molecular entities" RELATED [ChEBI] +is_a: CHEBI:33833 ! heteroarene +is_a: CHEBI:51143 ! nitrogen molecular entity +relationship: has_functional_parent CHEBI:18282 ! nucleobase + +[Term] +id: CHEBI:61214 +name: promethazine(1+) +namespace: chebi_ontology +def: "An ammonium ion that results from the protonation of the dimethyl-substituted nitrogen of promethazine." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "285.143" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "285.42700" RELATED MASS [ChEBI] +synonym: "C17H21N2S" RELATED FORMULA [ChEBI] +synonym: "CC(CN1c2ccccc2Sc2ccccc12)[NH+](C)C" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C17H20N2S/c1-13(18(2)3)12-19-14-8-4-6-10-16(14)20-17-11-7-5-9-15(17)19/h4-11,13H,12H2,1-3H3/p+1" RELATED InChI [ChEBI] +synonym: "N,N-dimethyl-1-(10H-phenothiazin-10-yl)propan-2-aminium" EXACT IUPAC_NAME [IUPAC] +synonym: "promethazine cation" RELATED [ChEBI] +synonym: "promethazinium" RELATED [ChEBI] +synonym: "PWWVAXIEGOYWEE-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +xref: Reaxys:4263748 "Reaxys" +is_a: CHEBI:35274 ! ammonium ion +relationship: is_conjugate_acid_of CHEBI:8461 ! promethazine + +[Term] +id: CHEBI:61292 +name: guanyl nucleotide +namespace: chebi_ontology +def: "A nucleotide having guanine as the base." [] +subset: 3_STAR +is_a: CHEBI:26395 ! purine nucleotide +relationship: has_functional_parent CHEBI:16235 ! guanine + +[Term] +id: CHEBI:61293 +name: adenyl nucleotide +namespace: chebi_ontology +def: "A nucleotide having adenine as the base." [] +subset: 3_STAR +is_a: CHEBI:26395 ! purine nucleotide + +[Term] +id: CHEBI:61295 +name: guanyl ribonucleotide +namespace: chebi_ontology +def: "A purine ribonucleotide where the purine is guanine." [] +subset: 3_STAR +is_a: CHEBI:26400 ! purine ribonucleotide +is_a: CHEBI:61292 ! guanyl nucleotide + +[Term] +id: CHEBI:61296 +name: adenyl ribonucleotide +namespace: chebi_ontology +def: "A purine riboncleotide where adenine is the purine." [] +subset: 3_STAR +synonym: "adenine ribonucleotide" RELATED [SUBMITTER] +is_a: CHEBI:26400 ! purine ribonucleotide +is_a: CHEBI:61293 ! adenyl nucleotide + +[Term] +id: CHEBI:61297 +name: adenyl deoxyribonucleotide +namespace: chebi_ontology +def: "A purine 2'-deoxyribonucleotide where the purine is adenine." [] +subset: 3_STAR +synonym: "adenine deoxyribonucleotide" RELATED [SUBMITTER] +is_a: CHEBI:26390 ! purine 2'-deoxyribonucleotide +is_a: CHEBI:61293 ! adenyl nucleotide + +[Term] +id: CHEBI:61313 +name: C21-steroid +namespace: chebi_ontology +def: "A steroid compound with a structure based on a 21-carbon (pregnane) skeleton." [] +subset: 3_STAR +is_a: CHEBI:35341 ! steroid + +[Term] +id: CHEBI:61336 +name: C4-dicarboxylate +namespace: chebi_ontology +def: "A dicarboxylate that contains four carbon atoms." [] +subset: 3_STAR +is_a: CHEBI:28965 ! dicarboxylic acid dianion +relationship: is_conjugate_base_of CHEBI:66873 ! C4-dicarboxylic acid + +[Term] +id: CHEBI:61355 +name: 3-hydroxy carboxylic acid +namespace: chebi_ontology +def: "Any hydroxy carboxylic acid which contains a hydroxy group located beta- to the carboxylic acid group." [] +subset: 3_STAR +synonym: "3-hydroxy carboxylic acids" RELATED [ChEBI] +synonym: "3-hydroxycarboxylic acid" RELATED [ChEBI] +synonym: "3-hydroxycarboxylic acids" RELATED [ChEBI] +synonym: "beta-hydroxy carboxylic acid" RELATED [ChEBI] +synonym: "beta-hydroxy carboxylic acids" RELATED [ChEBI] +synonym: "beta-hydroxycarboxylic acid" RELATED [ChEBI] +synonym: "beta-hydroxycarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:24669 ! hydroxy carboxylic acid + +[Term] +id: CHEBI:61404 +name: dATP(4-) +namespace: chebi_ontology +def: "A 2'-deoxyribonucleoside 5'-triphosphate(4-) that is the tetraanion of 2'-deoxyadenosine 5'-triphosphate(dATP), arising from deprotonation of the four triphosphate OH groups; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-4" RELATED CHARGE [ChEBI] +synonym: "2'-deoxyadenosine 5'-triphosphate" RELATED [ChEBI] +synonym: "2'-deoxyadenosine 5'-triphosphate tetraanion" RELATED [ChEBI] +synonym: "2'-deoxyadenosine 5'-triphosphate(4-)" RELATED [SUBMITTER] +synonym: "486.970" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "487.14990" RELATED MASS [ChEBI] +synonym: "C10H12N5O12P3" RELATED FORMULA [ChEBI] +synonym: "dATP" RELATED [UniProt] +synonym: "dATP tetraanion" RELATED [SUBMITTER] +synonym: "InChI=1S/C10H16N5O12P3/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(16)6(25-7)2-24-29(20,21)27-30(22,23)26-28(17,18)19/h3-7,16H,1-2H2,(H,20,21)(H,22,23)(H2,11,12,13)(H2,17,18,19)/p-4/t5-,6+,7+/m0/s1" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@H]1C[C@H](O)[C@@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)O1" RELATED SMILES [ChEBI] +synonym: "SUYVUBYJARFZHO-RRKCRQDMSA-J" RELATED InChIKey [ChEBI] +xref: MetaCyc:DATP "SUBMITTER" +xref: Reaxys:5788808 "Reaxys" +is_a: CHEBI:61560 ! 2'-deoxyribonucleoside 5'-triphosphate(4-) +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:495505 ! dATP(3-) + +[Term] +id: CHEBI:61448 +name: isopropyl beta-D-thiogalactopyranoside +namespace: chebi_ontology +alt_id: CHEBI:43601 +def: "An S-glycosyl compound consisting of beta-D-1-thiogalactose having an isopropyl group attached to the anomeric sulfur." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "238.087" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "238.30100" RELATED MASS [ChEBI] +synonym: "BPHPUYQFMNQIOC-NXRLNHOXSA-N" RELATED InChIKey [ChEBI] +synonym: "C9H18O5S" RELATED FORMULA [ChEBI] +synonym: "CC(C)S[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C9H18O5S/c1-4(2)15-9-8(13)7(12)6(11)5(3-10)14-9/h4-13H,3H2,1-2H3/t5-,6+,7+,8-,9+/m1/s1" RELATED InChI [ChEBI] +synonym: "IPTG" RELATED [SUBMITTER] +synonym: "isopropyl beta-D-1-thiogalactopyranoside" RELATED [ChEBI] +synonym: "isopropyl beta-D-thiogalactoside" RELATED [ChemIDplus] +synonym: "isopropyl thiogalactoside" RELATED [ChemIDplus] +synonym: "isopropyl-beta-D-thiogalactopyranoside" RELATED [ChemIDplus] +synonym: "isopropyl-beta-D-thiogalactoside" RELATED [ChemIDplus] +xref: CAS:367-93-1 "ChemIDplus" +xref: colombos:IPTG +xref: colombos:IPTG\:+_unknownmM +xref: colombos:IPTG\:+UNKNOWNmM +xref: Patent:US6995145 +xref: PDBeChem:IPT +xref: PMID:16274703 "Europe PMC" +xref: PMID:7621904 "Europe PMC" +xref: PMID:7746284 "Europe PMC" +xref: Reaxys:4631 "Reaxys" +is_a: CHEBI:35275 ! S-glycosyl compound + +[Term] +id: CHEBI:61557 +name: nucleoside triphosphate(4-) +namespace: chebi_ontology +def: "A ribonucleoside triphosphate oxoanion arising from global deprotonation of the triphosphate group of any nucleoside triphosphate." [] +subset: 3_STAR +synonym: "-4" RELATED CHARGE [ChEBI] +synonym: "368.918" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "384.06500" RELATED MASS [ChEBI] +synonym: "a ribonucleoside 5'-triphosphate" RELATED [UniProt] +synonym: "C5H8O13P3R" RELATED FORMULA [ChEBI] +synonym: "C[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "NTP tetraanion" RELATED [ChEBI] +synonym: "NTP(4-)" RELATED [SUBMITTER] +synonym: "nucleoside 5'-triphosphate tetraanion" RELATED [ChEBI] +synonym: "nucleoside triphosphate(4-)" EXACT [ChEBI] +is_a: CHEBI:59724 ! ribonucleoside triphosphate oxoanion +relationship: is_conjugate_base_of CHEBI:58104 ! nucleoside triphosphate(3-) + +[Term] +id: CHEBI:61560 +name: 2'-deoxyribonucleoside 5'-triphosphate(4-) +namespace: chebi_ontology +def: "A 2'-deoxyribonucleoside triphosphate oxoanion being the tetraanion formed by global deprotonation of the triphosphate group." [] +subset: 3_STAR +synonym: "-4" RELATED CHARGE [ChEBI] +synonym: "352.923" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "368.06560" RELATED MASS [ChEBI] +synonym: "a 2'-deoxyribonucleoside 5'-triphosphate" RELATED [UniProt] +synonym: "C5H8O12P3R" RELATED FORMULA [ChEBI] +synonym: "C[C@H]1C[C@H](O)[C@@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)O1" RELATED SMILES [ChEBI] +synonym: "deoxyribonucleoside triphosphate(4-)" RELATED [ChEBI] +synonym: "dNTP(4-)" RELATED [SUBMITTER] +is_a: CHEBI:61662 ! 2'-deoxyribonucleoside triphosphate oxoanion +relationship: is_conjugate_base_of CHEBI:16381 ! 2'-deoxyribonucleoside 5'-triphosphate + +[Term] +id: CHEBI:616459 +name: carbamimidoylazanium +namespace: chebi_ontology +subset: 2_STAR +is_a: CHEBI:35359 ! carboxamidine +relationship: is_conjugate_base_of CHEBI:30087 ! guanidinium + +[Term] +id: CHEBI:61662 +name: 2'-deoxyribonucleoside triphosphate oxoanion +namespace: chebi_ontology +def: "An organophosphate anion resulting from deprotonation of at least one of the acidic hydroxy groups from the triphosphate moiety of a 2'-deoxyribonucleoside triphosphate." [] +subset: 3_STAR +synonym: "2'-deoxyribonucleoside triphosphate anion" RELATED [ChEBI] +synonym: "2'-deoxyribonucleoside triphosphate anions" RELATED [ChEBI] +synonym: "2'-deoxyribonucleoside triphosphate oxoanions" RELATED [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion + +[Term] +id: CHEBI:61689 +name: amino cyclitol +namespace: chebi_ontology +def: "Any cyclitol having one or more alcoholic hydroxy groups replaced by substituted or unsubstituted amino groups." [] +subset: 3_STAR +synonym: "amino cyclitols" RELATED [ChEBI] +synonym: "aminocyclitol" RELATED [ChEBI] +synonym: "aminocyclitols" RELATED [ChEBI] +is_a: CHEBI:23451 ! cyclitol + +[Term] +id: CHEBI:61697 +name: fatty acid derivative +namespace: chebi_ontology +def: "Any organic molecular entity derived from a fatty acid." [] +subset: 3_STAR +synonym: "FA derivative" RELATED [ChEBI] +synonym: "FA derivatives" RELATED [ChEBI] +synonym: "fatty acid derivatives" RELATED [ChEBI] +is_a: CHEBI:50860 ! organic molecular entity +relationship: has_functional_parent CHEBI:35366 ! fatty acid + +[Term] +id: CHEBI:61908 +name: EC 1.14.13.39 (nitric oxide synthase) inhibitor +namespace: chebi_ontology +def: "An EC 1.14.13.* (oxidoreductase acting on paired donors, incorporating 1 atom of oxygen, with NADH or NADPH as one donor) inhibitor that interferes with the action of nitric oxide synthase (EC 1.14.13.39)." [] +subset: 3_STAR +synonym: "EC 1.14.13.39 (nitric oxide synthase) inhibitors" RELATED [ChEBI] +synonym: "EC 1.14.13.39 inhibitor" RELATED [ChEBI] +synonym: "EC 1.14.13.39 inhibitors" RELATED [ChEBI] +synonym: "endothelium-derived relaxation factor-forming enzyme inhibitor" RELATED [ChEBI] +synonym: "endothelium-derived relaxation factor-forming enzyme inhibitors" RELATED [ChEBI] +synonym: "endothelium-derived relaxing factor synthase inhibitor" RELATED [ChEBI] +synonym: "endothelium-derived relaxing factor synthase inhibitors" RELATED [ChEBI] +synonym: "NADPH-diaphorase inhibitor" RELATED [ChEBI] +synonym: "NADPH-diaphorase inhibitors" RELATED [ChEBI] +synonym: "nitric oxide synthase (EC 1.14.13.39) inhibitor" RELATED [ChEBI] +synonym: "nitric oxide synthase (EC 1.14.13.39) inhibitors" RELATED [ChEBI] +synonym: "nitric oxide synthase inhibitor" RELATED [ChEBI] +synonym: "nitric oxide synthase inhibitors" RELATED [ChEBI] +synonym: "nitric oxide synthetase inhibitor" RELATED [ChEBI] +synonym: "nitric oxide synthetase inhibitors" RELATED [ChEBI] +synonym: "nitric-oxide synthetase inhibitor" RELATED [ChEBI] +synonym: "nitric-oxide synthetase inhibitors" RELATED [ChEBI] +synonym: "NO synthase inhibitor" RELATED [ChEBI] +synonym: "NO synthase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Nitric_oxide_synthase +is_a: CHEBI:76841 ! EC 1.14.13.* (oxidoreductase acting on paired donors, incorporating 1 atom of oxygen, with NADH or NADPH as one donor) inhibitor + +[Term] +id: CHEBI:61991 +name: maltotriose trisaccharide +namespace: chebi_ontology +def: "A trisaccharide comprised of three D-glucose residues connected by alpha(1->4) linkages." [] +subset: 3_STAR +synonym: "maltotrioses" RELATED [ChEBI] +is_a: CHEBI:17593 ! maltooligosaccharide +is_a: CHEBI:27150 ! trisaccharide + +[Term] +id: CHEBI:61993 +name: maltotriose +namespace: chebi_ontology +def: "A maltotriose trisaccharide in which the glucose residue at the reducing end is in the aldehydo open-chain form." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "504.169" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "504.43710" RELATED MASS [ChEBI] +synonym: "alpha-D-Glcp-(1->4)-alpha-D-Glcp-(1->4)-D-Glc" RELATED [JCBN] +synonym: "alpha-D-glucopyranosyl-(1->4)-alpha-D-glucopyranosyl-(1->4)-D-glucose" EXACT IUPAC_NAME [IUPAC] +synonym: "Amylotriose" RELATED [ChemIDplus] +synonym: "Amylotriose" RELATED [KEGG_COMPOUND] +synonym: "C18H32O16" RELATED FORMULA [ChEBI] +synonym: "D-maltotriose" RELATED [ChEBI] +synonym: "InChI=1S/C18H32O16/c19-1-5(23)9(25)15(6(24)2-20)33-18-14(30)12(28)16(8(4-22)32-18)34-17-13(29)11(27)10(26)7(3-21)31-17/h1,5-18,20-30H,2-4H2/t5-,6+,7+,8+,9+,10+,11-,12+,13+,14+,15+,16+,17+,18+/m0/s1" RELATED InChI [ChEBI] +synonym: "OC[C@@H](O)[C@@H](O[C@H]1O[C@H](CO)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O)[C@H](O)[C@@H](O)C=O" RELATED SMILES [ChEBI] +synonym: "RXVWSYJTUUKTEA-CGQAXDJHSA-N" RELATED InChIKey [ChEBI] +xref: CAS:1109-28-0 "ChemIDplus" +xref: KEGG:C01835 +xref: PDBeChem:MLR +xref: Reaxys:100354 "Reaxys" +is_a: CHEBI:61991 ! maltotriose trisaccharide + +[Term] +id: CHEBI:62031 +name: polar amino acid zwitterion +namespace: chebi_ontology +def: "Zwitterionic form of a polar amino acid having an anionic carboxy group and a protonated amino group." [] +subset: 2_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "74.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "74.05870" RELATED MASS [ChEBI] +synonym: "[NH3+]C([*])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "a polar amino acid" RELATED [UniProt] +synonym: "C2H4NO2R" RELATED FORMULA [ChEBI] +xref: MetaCyc:Polar-amino-acids "SUBMITTER" +is_a: CHEBI:26167 ! polar amino acid +is_a: CHEBI:35238 ! amino acid zwitterion + +[Term] +id: CHEBI:62049 +name: acyl donor +namespace: chebi_ontology +def: "Any donor that can transfer acyl groups between molecular entities." [] +subset: 3_STAR +xref: PMID:16100120 "Europe PMC" +xref: PMID:19052863 "Europe PMC" +is_a: CHEBI:17891 ! donor + +[Term] +id: CHEBI:62070 +name: nalidixic acid anion +namespace: chebi_ontology +def: "A monocarboxylic acid anion that is the conjugate base of nalidixic acid; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "1-ethyl-7-methyl-4-oxo-1,4-dihydro-1,8-naphthyridine-3-carboxylate" EXACT IUPAC_NAME [IUPAC] +synonym: "231.077" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "231.22730" RELATED MASS [ChEBI] +synonym: "C12H11N2O3" RELATED FORMULA [ChEBI] +synonym: "CCn1cc(C([O-])=O)c(=O)c2ccc(C)nc12" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C12H12N2O3/c1-3-14-6-9(12(16)17)10(15)8-5-4-7(2)13-11(8)14/h4-6H,3H2,1-2H3,(H,16,17)/p-1" RELATED InChI [ChEBI] +synonym: "MHWLWQUZZRMNGJ-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "nalidixate" RELATED [ChEBI] +synonym: "nalidixate anion" RELATED [ChEBI] +synonym: "nalidixate(1-)" RELATED [ChEBI] +xref: PMID:10793679 "Europe PMC" +xref: PMID:16107187 "Europe PMC" +xref: PMID:375215 "Europe PMC" +xref: PMID:6283318 "Europe PMC" +xref: PMID:673862 "Europe PMC" +xref: PMID:766016 "Europe PMC" +xref: PMID:785214 "Europe PMC" +xref: PMID:8893520 "Europe PMC" +xref: Reaxys:3556893 "Reaxys" +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:100147 ! nalidixic acid + +[Term] +id: CHEBI:62081 +name: 1,1-diunsubstituted alkanesulfonate +namespace: chebi_ontology +def: "An alkanesulfonate in which the carbon at position 1 is attached to at least two hydrogens." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "1,1-di-unsubstituted alkanesulfonate" RELATED [ChEBI] +synonym: "1,1-di-unsubstituted alkanesulfonates" RELATED [ChEBI] +synonym: "1,1-diunsubstituted alkanesulfonates" RELATED [ChEBI] +synonym: "93.972" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "94.09000" RELATED MASS [ChEBI] +synonym: "[H]C([H])([*])S([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "CH2O3SR" RELATED FORMULA [ChEBI] +xref: KEGG:C15521 +xref: MetaCyc:Alkanesulfonates +is_a: CHEBI:134249 ! alkanesulfonate oxoanion +relationship: has_role CHEBI:35703 ! xenobiotic + +[Term] +id: CHEBI:62164 +name: N-acetylmannosamine +namespace: chebi_ontology +def: "Any mannosamine carrying an N-acetyl substituent" [] +subset: 3_STAR +synonym: "N-acetylmannosamines" RELATED [ChEBI] +is_a: CHEBI:25166 ! mannosamine + +[Term] +id: CHEBI:62345 +name: L-rhamnose +namespace: chebi_ontology +def: "Any rhamnose having L-configuration. L-rhamnose occurs naturally in many plant glycosides and some gram-negative bacterial lipopolysaccharides." [] +subset: 3_STAR +synonym: "L-rhamnoses" RELATED [ChEBI] +xref: DrugBank:DB02961 +xref: HMDB:HMDB00849 +xref: KEGG:C00507 +xref: PMID:19913595 "Europe PMC" +xref: PMID:22770225 "Europe PMC" +xref: Wikipedia:Rhamnose +is_a: CHEBI:26546 ! rhamnose + +[Term] +id: CHEBI:62414 +name: biotinyl-5'-AMP(1-) +namespace: chebi_ontology +def: "The organophosphate oxoanion that is the monoanion formed from biotinyl-5'-AMP by loss of a proton from the phospho group; major microspecies at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "572.133" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "572.50900" RELATED MASS [ChEBI] +synonym: "[H][C@]12CS[C@@H](CCCCC(=O)OP([O-])(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n3cnc4c(N)ncnc34)[C@@]1([H])NC(=O)N2" RELATED SMILES [ChEBI] +synonym: "biotinyl-5'-adenylate" RELATED [MetaCyc] +synonym: "biotinyl-5'-adenylate (1-)" RELATED [SUBMITTER] +synonym: "biotinyl-5'-AMP" RELATED [UniProt] +synonym: "C20H27N7O9PS" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C20H28N7O9PS/c21-17-14-18(23-7-22-17)27(8-24-14)19-16(30)15(29)10(35-19)5-34-37(32,33)36-12(28)4-2-1-3-11-13-9(6-38-11)25-20(31)26-13/h7-11,13,15-16,19,29-30H,1-6H2,(H,32,33)(H2,21,22,23)(H2,25,26,31)/p-1/t9-,10+,11-,13-,15+,16+,19+/m0/s1" RELATED InChI [ChEBI] +synonym: "UTQCSTJVMLODHM-RHCAYAJFSA-M" RELATED InChIKey [ChEBI] +xref: MetaCyc:BIO-5-AMP "SUBMITTER" +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: has_role CHEBI:75772 ! Saccharomyces cerevisiae metabolite +relationship: is_conjugate_base_of CHEBI:3110 ! biotinyl-5'-AMP + +[Term] +id: CHEBI:62488 +name: signalling molecule +namespace: chebi_ontology +def: "A molecular messenger in which the molecule is specifically involved in transmitting information between cells. Such molecules are released from the cell sending the signal, cross over the gap between cells by diffusion, and interact with specific receptors in another cell, triggering a response in that cell by activating a series of enzyme controlled reactions which lead to changes inside the cell." [] +subset: 3_STAR +synonym: "signal molecule" RELATED [ChEBI] +synonym: "signal molecules" RELATED [ChEBI] +synonym: "signaling molecule" RELATED [ChEBI] +synonym: "signaling molecules" RELATED [ChEBI] +synonym: "signalling molecules" RELATED [ChEBI] +is_a: CHEBI:33280 ! molecular messenger + +[Term] +id: CHEBI:62733 +name: aromatic amide +namespace: chebi_ontology +def: "An amide in which the amide linkage is bonded directly to an aromatic system." [] +subset: 3_STAR +synonym: "aromatic amides" RELATED [ChEBI] +is_a: CHEBI:32988 ! amide +is_a: CHEBI:33659 ! organic aromatic compound + +[Term] +id: CHEBI:62764 +name: reactive nitrogen species +namespace: chebi_ontology +def: "A family of nitrogen molecular entities which are highly reactive and derived from nitric oxide (.NO) and superoxide (O2.(-)) produced via the enzymatic activity of inducible nitric oxide synthase 2 (NOS2) and NADPH oxidase respectively." [] +subset: 3_STAR +synonym: "RNI" RELATED [SUBMITTER] +synonym: "RNS" RELATED [SUBMITTER] +xref: PMID:12076975 "SUBMITTER" +xref: PMID:17667957 "SUBMITTER" +xref: PMID:9741578 "SUBMITTER" +xref: Wikipedia:Reactive_nitrogen_species +is_a: CHEBI:51143 ! nitrogen molecular entity + +[Term] +id: CHEBI:62803 +name: fuel additive +namespace: chebi_ontology +def: "Any additive that enhances the efficiency of fuel." [] +subset: 3_STAR +synonym: "fuel additives" RELATED [ChEBI] +synonym: "fuel enhancer" RELATED [ChEBI] +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:62868 +name: hepatoprotective agent +namespace: chebi_ontology +def: "Any compound that is able to prevent damage to the liver." [] +subset: 3_STAR +synonym: "antihepatotoxic agent" RELATED [ChEBI] +synonym: "hepatoprotective agents" RELATED [ChEBI] +is_a: CHEBI:50267 ! protective agent + +[Term] +id: CHEBI:62944 +name: sialic acid anion +namespace: chebi_ontology +def: "A carboxylic acid anion that is the conjugate base of a sialic acid, formed by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "sialic acid anions" RELATED [ChEBI] +is_a: CHEBI:63551 ! carbohydrate acid derivative anion +relationship: is_conjugate_base_of CHEBI:26667 ! sialic acid + +[Term] +id: CHEBI:62946 +name: ammonium sulfate +namespace: chebi_ontology +def: "An inorganic sulfate salt obtained by reaction of sulfuric acid with two equivalents of ammonia. A high-melting (decomposes above 280degreeC) white solid which is very soluble in water (70.6 g/100 g water at 0degreeC; 103.8 g/100 g water at 100degreeC), it is widely used as a fertilizer for alkaline soils." [] +subset: 3_STAR +synonym: "(NH4)2SO4" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "132.020" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "132.14000" RELATED MASS [ChEBI] +synonym: "[NH4+].[NH4+].[O-]S([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "ammonium sulfate (2:1)" RELATED [ChemIDplus] +synonym: "ammonium sulphate" RELATED [SUBMITTER] +synonym: "BFNBIHQBYMNNAN-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "diammonium sulfate" RELATED [IUPAC] +synonym: "diazanium sulfate" EXACT IUPAC_NAME [IUPAC] +synonym: "H8N2O4S" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/2H3N.H2O4S/c;;1-5(2,3)4/h2*1H3;(H2,1,2,3,4)" RELATED InChI [ChEBI] +synonym: "mascagnite" RELATED [ChemIDplus] +synonym: "sulfuric acid ammonium salt (1:2)" RELATED [ChemIDplus] +synonym: "sulfuric acid, diammonium salt" RELATED [ChemIDplus] +xref: CAS:7783-20-2 "KEGG DRUG" +xref: KEGG:D08853 +xref: MetaCyc:NH42SO4 +xref: PMID:20556652 "Europe PMC" +xref: Reaxys:11343144 "Reaxys" +xref: Wikipedia:Ammonium_sulfate +is_a: CHEBI:24840 ! inorganic sulfate salt +is_a: CHEBI:47704 ! ammonium salt +relationship: has_role CHEBI:33287 ! fertilizer + +[Term] +id: CHEBI:62965 +name: sodium formate +namespace: chebi_ontology +def: "An organic sodium salt which is the monosodium salt of formic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "67.987" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "68.00720" RELATED MASS [ChEBI] +synonym: "[Na+].[H]C([O-])=O" RELATED SMILES [ChEBI] +synonym: "CHNaO2" RELATED FORMULA [ChEBI] +synonym: "FORMIC ACID, NA SALT" RELATED [ChemIDplus] +synonym: "formic acid, sodium salt" RELATED [SUBMITTER] +synonym: "Formic acid, sodium salt (1:1)" RELATED [ChemIDplus] +synonym: "HLBBKKJFGFRGMU-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/CH2O2.Na/c2-1-3;/h1H,(H,2,3);/q;+1/p-1" RELATED InChI [ChEBI] +synonym: "sodium formiate" RELATED [ChEBI] +synonym: "Sodium methanoate" RELATED [NIST_Chemistry_WebBook] +xref: CAS:141-53-7 "SUBMITTER" +xref: PMID:21760741 "Europe PMC" +xref: Reaxys:3595134 "Reaxys" +is_a: CHEBI:38700 ! organic sodium salt +relationship: has_part CHEBI:15740 ! formate +relationship: has_role CHEBI:35225 ! buffer +relationship: has_role CHEBI:74783 ! astringent + +[Term] +id: CHEBI:63005 +name: sodium nitrate +namespace: chebi_ontology +def: "The inorganic nitrate salt of sodium." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "84.978" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "84.99470" RELATED MASS [ChEBI] +synonym: "[Na+].[O-][N+]([O-])=O" RELATED SMILES [ChEBI] +synonym: "Chile saltpeter" RELATED [SUBMITTER] +synonym: "Cubic niter" RELATED [ChemIDplus] +synonym: "InChI=1S/NO3.Na/c2-1(3)4;/q-1;+1" RELATED InChI [ChEBI] +synonym: "Niter" RELATED [ChemIDplus] +synonym: "Nitrate de sodium" RELATED [ChemIDplus] +synonym: "Nitrate of soda" RELATED [SUBMITTER] +synonym: "Nitrate of soda" RELATED [ChemIDplus] +synonym: "Nitric acid monosodium salt" RELATED [ChemIDplus] +synonym: "Nitric acid sodium salt (1:1)" RELATED [ChemIDplus] +synonym: "Nitric acid, sodium salt" RELATED [ChemIDplus] +synonym: "NNaO3" RELATED FORMULA [ChEBI] +synonym: "sodium nitrate" EXACT IUPAC_NAME [IUPAC] +synonym: "Sodium saltpeter" RELATED [ChemIDplus] +synonym: "sodium trioxidonitrate(1-)" EXACT IUPAC_NAME [IUPAC] +synonym: "Sodium(I) nitrate (1:1)" RELATED [ChemIDplus] +synonym: "VWDWKYIASSYTQR-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7631-99-4 "ChemIDplus" +xref: Reaxys:11343077 "Reaxys" +xref: Wikipedia:Sodium_nitrate +is_a: CHEBI:38702 ! inorganic sodium salt +is_a: CHEBI:51084 ! inorganic nitrate salt +relationship: has_role CHEBI:33287 ! fertilizer + +[Term] +id: CHEBI:63041 +name: manganese(II) chloride +namespace: chebi_ontology +def: "An inorganic chloride in which manganese(II) is coordinated to two chloride ions. In its anhydrous state manganese(II) chloride is a polymeric solid, which adopts a layered cadmium chloride-like structure." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "124.876" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "125.84400" RELATED MASS [ChEBI] +synonym: "Cl2Mn" RELATED FORMULA [ChEBI] +synonym: "Cl[Mn]Cl" RELATED SMILES [ChEBI] +synonym: "dichlorure de manganese" RELATED [ChEBI] +synonym: "GLFNIEUTAYBVOC-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/2ClH.Mn/h2*1H;/q;;+2/p-2" RELATED InChI [ChEBI] +synonym: "Mangandichlorid" RELATED [ChEBI] +synonym: "Manganese bichloride" RELATED [ChemIDplus] +synonym: "manganese(2+) dichloride" EXACT IUPAC_NAME [IUPAC] +synonym: "Manganese(II) chloride (1:2)" RELATED [ChemIDplus] +synonym: "manganese(II) dichloride" RELATED [ChEBI] +synonym: "Manganous chloride" RELATED [ChemIDplus] +synonym: "manganous chloride" RELATED [SUBMITTER] +synonym: "manganous dichloride" RELATED [NIST_Chemistry_WebBook] +xref: CAS:7773-01-5 "ChemIDplus" +xref: colombos:MgSO4 +xref: colombos:MnCl2 +xref: MetaCyc:CPD0-2394 +xref: PMID:101555 "Europe PMC" +xref: PMID:146543 "Europe PMC" +xref: PMID:19801673 "Europe PMC" +xref: PMID:3143594 "Europe PMC" +xref: PMID:4476198 "Europe PMC" +xref: PMID:4771199 "Europe PMC" +xref: PMID:98204 "Europe PMC" +xref: Reaxys:8128170 "Reaxys" +xref: Wikipedia:Manganese(II)_chloride +is_a: CHEBI:35117 ! manganese coordination entity +is_a: CHEBI:36093 ! inorganic chloride +relationship: has_role CHEBI:50733 ! nutraceutical + +[Term] +id: CHEBI:63043 +name: potassium nitrate +namespace: chebi_ontology +def: "The inorganic nitrate salt of potassium." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "100.952" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "101.10320" RELATED MASS [ChEBI] +synonym: "[K+].[O-][N+]([O-])=O" RELATED SMILES [ChEBI] +synonym: "FGIUAXJPYTZDNR-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/K.NO3/c;2-1(3)4/q+1;-1" RELATED InChI [ChEBI] +synonym: "Kaliumnitrat" RELATED [ChemIDplus] +synonym: "KNO3" RELATED FORMULA [ChEBI] +synonym: "Niter" RELATED [ChemIDplus] +synonym: "Nitrate of potash" RELATED [ChemIDplus] +synonym: "Nitre" RELATED [ChemIDplus] +synonym: "Nitric acid, potassium salt" RELATED [ChemIDplus] +synonym: "potassium nitrate" EXACT IUPAC_NAME [IUPAC] +synonym: "Salt peter" RELATED [ChemIDplus] +synonym: "Saltpeter" RELATED [ChemIDplus] +synonym: "saltpetre" RELATED [SUBMITTER] +xref: CAS:7757-79-1 "ChemIDplus" +xref: colombos:KNO3 +xref: KEGG:D02051 "SUBMITTER" +xref: PMID:20062955 "Europe PMC" +xref: PMID:21566718 "Europe PMC" +xref: PMID:21770249 "Europe PMC" +xref: PMID:21905227 "Europe PMC" +xref: Reaxys:16014598 "Reaxys" +xref: Wikipedia:Potassium_nitrate +is_a: CHEBI:26218 ! potassium salt +is_a: CHEBI:51084 ! inorganic nitrate salt +relationship: has_role CHEBI:33287 ! fertilizer + +[Term] +id: CHEBI:63046 +name: emulsifier +namespace: chebi_ontology +def: "The chemical role played by a substance that stabilizes an emulsion by increasing its kinetic stability." [] +subset: 3_STAR +synonym: "emulgent" RELATED [ChEBI] +synonym: "emulgents" RELATED [ChEBI] +synonym: "emulsifiers" RELATED [ChEBI] +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:63056 +name: zinc cation +namespace: chebi_ontology +def: "Any zinc ion that is positively charged." [] +subset: 3_STAR +synonym: "zinc cations" RELATED [ChEBI] +is_a: CHEBI:27365 ! zinc ion +is_a: CHEBI:33515 ! transition element cation + +[Term] +id: CHEBI:63063 +name: cadmium cation +namespace: chebi_ontology +def: "A transition element cation where the metal is specifed as cadmium." [] +subset: 3_STAR +synonym: "cadmium cations" RELATED [ChEBI] +is_a: CHEBI:33515 ! transition element cation + +[Term] +id: CHEBI:63070 +name: beta-alaninate +namespace: chebi_ontology +def: "A beta-amino-acid anion that is the conjugate base of beta-alanine." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "3-aminopropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "88.040" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "88.08520" RELATED MASS [ChEBI] +synonym: "beta-alaninate anion" RELATED [ChEBI] +synonym: "beta-alaninate(1-)" RELATED [ChEBI] +synonym: "C3H6NO2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H7NO2/c4-2-1-3(5)6/h1-2,4H2,(H,5,6)/p-1" RELATED InChI [ChEBI] +synonym: "NCCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "UCMIRNVEIXFBKS-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: Reaxys:3536336 "Reaxys" +is_a: CHEBI:49095 ! beta-amino-acid anion +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:16958 ! beta-alanine + +[Term] +id: CHEBI:63072 +name: L-homocysteinate +namespace: chebi_ontology +def: "An L-alpha-amino acid anion that is the conjugate base of L-homocysteine, obtained by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "(2S)-2-amino-4-sulfanylbutanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "134.028" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "134.17700" RELATED MASS [ChEBI] +synonym: "C4H8NO2S" RELATED FORMULA [ChEBI] +synonym: "FFFHZYDWPBMWHY-VKHMYHEASA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H9NO2S/c5-3(1-2-8)4(6)7/h3,8H,1-2,5H2,(H,6,7)/p-1/t3-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-homocysteate" RELATED [MetaCyc] +synonym: "L-homocysteinate anion" RELATED [ChEBI] +synonym: "L-homocysteinate(1-)" RELATED [ChEBI] +synonym: "N[C@@H](CCS)C([O-])=O" RELATED SMILES [ChEBI] +xref: MetaCyc:L-HOMOCYSTEATE +xref: Reaxys:6965804 "Reaxys" +is_a: CHEBI:59814 ! L-alpha-amino acid anion +is_a: CHEBI:66952 ! homocysteinate +relationship: is_conjugate_base_of CHEBI:17588 ! L-homocysteine + +[Term] +id: CHEBI:63153 +name: N-acetyl-D-mannosamine +namespace: chebi_ontology +def: "An N-acetylmannosamine having D-configuration." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-acetamido-2-deoxy-D-mannopyranose" EXACT IUPAC_NAME [IUPAC] +synonym: "2-Acetamido-2-deoxy-D-mannose" RELATED [KEGG_COMPOUND] +synonym: "221.090" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "221.20780" RELATED MASS [ChEBI] +synonym: "C8H15NO6" RELATED FORMULA [ChEBI] +synonym: "CC(=O)N[C@@H]1C(O)O[C@H](CO)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5+,6-,7-,8?/m1/s1" RELATED InChI [ChEBI] +synonym: "ManNAc" RELATED [ChEBI] +synonym: "N-acetylmannosamine" RELATED [ChEBI] +synonym: "OVRNDRQMDRJTHS-ZTVVOAFPSA-N" RELATED InChIKey [ChEBI] +xref: CAS:3615-17-6 "KEGG COMPOUND" +xref: HMDB:HMDB01129 +xref: KEGG:C00645 +xref: KNApSAcK:C00019583 +xref: PMID:24430654 "Europe PMC" +xref: PMID:24521460 "Europe PMC" +xref: Reaxys:1115779 "Reaxys" +is_a: CHEBI:16062 ! N-acyl-D-mannosamine +is_a: CHEBI:21601 ! N-acetyl-D-hexosamine +is_a: CHEBI:62164 ! N-acetylmannosamine +relationship: has_role CHEBI:76969 ! bacterial metabolite + +[Term] +id: CHEBI:63161 +name: glycosyl compound +namespace: chebi_ontology +def: "A carbohydrate derivative arising formally from the elimination of water from a glycosidic hydroxy group and an H atom bound to an oxygen, carbon, nitrogen or sulfur atom of a separate entity." [] +subset: 3_STAR +synonym: "glycosyl compounds" RELATED [ChEBI] +is_a: CHEBI:63299 ! carbohydrate derivative + +[Term] +id: CHEBI:63165 +name: ribonucleoside monophosphate oxoanion +namespace: chebi_ontology +def: "An organophosphate oxoanion resulting from deprotonation of at least one of the acidic hydroxy groups from the phosphate moiety of a ribonucleoside monophosphate." [] +subset: 3_STAR +synonym: "ribonucleoside monophosphate oxoanions" RELATED [ChEBI] +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:26558 ! ribonucleoside monophosphate + +[Term] +id: CHEBI:63247 +name: reducing agent +namespace: chebi_ontology +def: "The element or compound in a reduction-oxidation (redox) reaction that donates an electron to another species." [] +subset: 3_STAR +synonym: "reducer" RELATED [ChEBI] +synonym: "reducers" RELATED [ChEBI] +synonym: "reducing agents" RELATED [ChEBI] +synonym: "reductant" RELATED [ChEBI] +synonym: "reductants" RELATED [ChEBI] +xref: Wikipedia:Reducing_agent +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:63248 +name: oxidising agent +namespace: chebi_ontology +def: "A substance that removes electrons from another reactant in a redox reaction." [] +subset: 3_STAR +synonym: "oxidant" RELATED [ChEBI] +synonym: "oxidants" RELATED [ChEBI] +synonym: "oxidiser" RELATED [ChEBI] +synonym: "oxidisers" RELATED [ChEBI] +synonym: "oxidising agents" RELATED [ChEBI] +synonym: "oxidizer" RELATED [ChEBI] +synonym: "oxidizers" RELATED [ChEBI] +synonym: "oxidizing agent" RELATED [ChEBI] +synonym: "oxidizing agents" RELATED [ChEBI] +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:63299 +name: carbohydrate derivative +namespace: chebi_ontology +def: "Any organooxygen compound derived from a carbohydrate by replacement of one or more hydroxy group(s) by an amino group, a thiol group or similar heteroatomic groups. The term also includes derivatives of these compounds." [] +subset: 3_STAR +synonym: "carbohydrate derivatives" RELATED [ChEBI] +synonym: "derivatised carbohydrate" RELATED [ChEBI] +synonym: "derivatised carbohydrates" RELATED [ChEBI] +synonym: "derivatized carbohydrate" RELATED [ChEBI] +synonym: "derivatized carbohydrates" RELATED [ChEBI] +is_a: CHEBI:78616 ! carbohydrates and carbohydrate derivatives +relationship: has_functional_parent CHEBI:16646 ! carbohydrate + +[Term] +id: CHEBI:63332 +name: EC 3.1.3.1 (alkaline phosphatase) inhibitor +namespace: chebi_ontology +def: "An EC 3.1.3.* (phosphoric monoester hydrolase) inhibitor that interferes with the action of alkaline phosphatase (EC 3.1.3.1)." [] +subset: 3_STAR +synonym: "alkaline phenyl phosphatase inhibitor" RELATED [ChEBI] +synonym: "alkaline phenyl phosphatase inhibitors" RELATED [ChEBI] +synonym: "alkaline phosphatase (EC 3.1.3.1) inhibitor" RELATED [ChEBI] +synonym: "alkaline phosphatase (EC 3.1.3.1) inhibitors" RELATED [ChEBI] +synonym: "alkaline phosphatase inhibitor" RELATED [ChEBI] +synonym: "alkaline phosphatase inhibitors" RELATED [ChEBI] +synonym: "alkaline phosphohydrolase inhibitor" RELATED [ChEBI] +synonym: "alkaline phosphohydrolase inhibitors" RELATED [ChEBI] +synonym: "alkaline phosphomonoesterase inhibitor" RELATED [ChEBI] +synonym: "alkaline phosphomonoesterase inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.3.1 (alkaline phosphatase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.3.1 inhibitor" RELATED [ChEBI] +synonym: "EC 3.1.3.1 inhibitors" RELATED [ChEBI] +synonym: "glycerophosphatase inhibitor" RELATED [ChEBI] +synonym: "glycerophosphatase inhibitors" RELATED [ChEBI] +synonym: "orthophosphoric-monoester phosphohydrolase (alkaline optimum) inhibitor" RELATED [ChEBI] +synonym: "orthophosphoric-monoester phosphohydrolase (alkaline optimum) inhibitors" RELATED [ChEBI] +synonym: "phosphate-monoester phosphohydrolase (alkaline optimum) inhibitor" RELATED [ChEBI] +synonym: "phosphate-monoester phosphohydrolase (alkaline optimum) inhibitors" RELATED [ChEBI] +synonym: "phosphomonoesterase inhibitor" RELATED [ChEBI] +synonym: "phosphomonoesterase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Alkaline_phosphatase +is_a: CHEBI:76775 ! EC 3.1.3.* (phosphoric monoester hydrolase) inhibitor + +[Term] +id: CHEBI:63338 +name: deoxy sugar derivative +namespace: chebi_ontology +def: "A carbohydrate derivative formally obtained from a deoxy sugar." [] +subset: 3_STAR +synonym: "deoxy sugar derivatives" RELATED [ChEBI] +synonym: "deoxysugar derivative" RELATED [ChEBI] +synonym: "deoxysugar derivatives" RELATED [ChEBI] +is_a: CHEBI:63299 ! carbohydrate derivative + +[Term] +id: CHEBI:63340 +name: deoxyhexose derivative +namespace: chebi_ontology +def: "A deoxy sugar derivative that is formally obtained from a deoxyhexose." [] +subset: 3_STAR +synonym: "deoxyhexose derivatives" RELATED [ChEBI] +is_a: CHEBI:63338 ! deoxy sugar derivative +relationship: has_functional_parent CHEBI:23628 ! deoxyhexose + +[Term] +id: CHEBI:63350 +name: deoxyketohexose derivative +namespace: chebi_ontology +def: "A deoxy sugar derivative that is formally obtained from a deoxyketohexose." [] +subset: 3_STAR +synonym: "deoxyketohexose derivatives" RELATED [ChEBI] +is_a: CHEBI:63340 ! deoxyhexose derivative +relationship: has_functional_parent CHEBI:24965 ! deoxyketohexose + +[Term] +id: CHEBI:63353 +name: disaccharide derivative +namespace: chebi_ontology +def: "A carbohydrate derivative that is formally obtained from a disaccharide." [] +subset: 3_STAR +synonym: "disaccharide derivatives" RELATED [ChEBI] +is_a: CHEBI:63299 ! carbohydrate derivative +relationship: has_functional_parent CHEBI:36233 ! disaccharide + +[Term] +id: CHEBI:63367 +name: monosaccharide derivative +namespace: chebi_ontology +def: "A carbohydrate derivative that is formally obtained from a monosaccharide." [] +subset: 3_STAR +synonym: "monosaccharide derivatives" RELATED [ChEBI] +is_a: CHEBI:63299 ! carbohydrate derivative +relationship: has_functional_parent CHEBI:35381 ! monosaccharide + +[Term] +id: CHEBI:63385 +name: hexose derivative +namespace: chebi_ontology +def: "A monosaccharide derivative that is formally obtained from a hexose." [] +subset: 3_STAR +synonym: "hexose derivatives" RELATED [ChEBI] +is_a: CHEBI:63367 ! monosaccharide derivative +relationship: has_functional_parent CHEBI:18133 ! hexose + +[Term] +id: CHEBI:63394 +name: ketoaldonic acid derivative +namespace: chebi_ontology +def: "A monosaccharide derivative that is formally obtained from a ketoaldonic acid." [] +subset: 3_STAR +synonym: "ketoaldonic acid derivatives" RELATED [ChEBI] +is_a: CHEBI:63367 ! monosaccharide derivative +relationship: has_functional_parent CHEBI:24963 ! ketoaldonic acid + +[Term] +id: CHEBI:63409 +name: pentose derivative +namespace: chebi_ontology +def: "A monosaccharide derivative that is formally obtained from a pentose." [] +subset: 3_STAR +synonym: "pentose derivatives" RELATED [ChEBI] +is_a: CHEBI:63367 ! monosaccharide derivative +relationship: has_functional_parent CHEBI:25901 ! pentose + +[Term] +id: CHEBI:63423 +name: alditol derivative +namespace: chebi_ontology +def: "A carbohydrate derivative that is formally obtained from an alditol." [] +subset: 3_STAR +synonym: "alditol derivatives" RELATED [ChEBI] +is_a: CHEBI:63299 ! carbohydrate derivative +relationship: has_functional_parent CHEBI:17522 ! alditol + +[Term] +id: CHEBI:63436 +name: carbohydrate acid derivative +namespace: chebi_ontology +def: "A carbohydrate derivative that is formally obtained from a carbohydrate acid." [] +subset: 3_STAR +synonym: "carbohydrate acid derivatives" RELATED [ChEBI] +is_a: CHEBI:63299 ! carbohydrate derivative +relationship: has_functional_parent CHEBI:33720 ! carbohydrate acid +relationship: is_conjugate_acid_of CHEBI:63551 ! carbohydrate acid derivative anion + +[Term] +id: CHEBI:63470 +name: sulfur-containing amino-acid anion +namespace: chebi_ontology +def: "A sulfur-containing amino acid whose alpha-carboxylic acid group is ionized (not protonated)." [] +subset: 3_STAR +synonym: "sulfur-containing amino-acid anions" RELATED [ChEBI] +is_a: CHEBI:37022 ! amino-acid anion +relationship: is_conjugate_base_of CHEBI:26834 ! sulfur-containing amino acid + +[Term] +id: CHEBI:63471 +name: branched-chain amino-acid anion +namespace: chebi_ontology +def: "A branched-chain amino acid whose alpha-carboxylic acid group is ionized (not protonated)." [] +subset: 3_STAR +synonym: "branched-chain amino-acid anions" RELATED [ChEBI] +is_a: CHEBI:37022 ! amino-acid anion +relationship: is_conjugate_base_of CHEBI:22918 ! branched-chain amino acid + +[Term] +id: CHEBI:63473 +name: aromatic amino-acid anion +namespace: chebi_ontology +def: "An aromatic amino acid whose alpha-carboxylic acid group is ionized (non-protonated)." [] +subset: 3_STAR +synonym: "aromatic amino-acid anions" RELATED [ChEBI] +is_a: CHEBI:37022 ! amino-acid anion +relationship: is_conjugate_base_of CHEBI:33856 ! aromatic amino acid + +[Term] +id: CHEBI:63490 +name: explosive +namespace: chebi_ontology +def: "A substance capable of undergoing rapid and highly exothermic decomposition." [] +subset: 3_STAR +synonym: "explosive compound" RELATED [ChEBI] +synonym: "explosive compounds" RELATED [ChEBI] +synonym: "explosive material" RELATED [ChEBI] +synonym: "explosives" RELATED [ChEBI] +synonym: "explosives chemical" RELATED [ChEBI] +synonym: "explosives chemicals" RELATED [ChEBI] +xref: Wikipedia:Explosive_material +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:63534 +name: monoamine +namespace: chebi_ontology +def: "An aralylamino compound which contains one amino group connected to an aromatic ring by a two-carbon chain. Monoamines are derived from aromatic amino acids like phenylalanine, tyrosine, tryptophan, and the thyroid hormones by the action of aromatic amino acid decarboxylase enzymes." [] +subset: 3_STAR +synonym: "monoamines" RELATED [ChEBI] +synonym: "naturally occurring monoamine" RELATED [ChEBI] +synonym: "naturally occurring monoamines" RELATED [ChEBI] +xref: PMID:21822758 "Europe PMC" +xref: PMID:21993877 "Europe PMC" +xref: PMID:22005599 "Europe PMC" +xref: PMID:22082101 "Europe PMC" +xref: PMID:22153577 "Europe PMC" +xref: PMID:22213370 "Europe PMC" +xref: PMID:22218931 "Europe PMC" +xref: PMID:22342987 "Europe PMC" +xref: PMID:22371656 "Europe PMC" +is_a: CHEBI:64365 ! aralkylamino compound + +[Term] +id: CHEBI:63551 +name: carbohydrate acid derivative anion +namespace: chebi_ontology +def: "A carboxylic acid anion resulting from the deprotonation of the carboxy group of a carbohydrate acid derivative." [] +subset: 3_STAR +synonym: "carbohydrate acid anion derivative" RELATED [ChEBI] +synonym: "carbohydrate acid anion derivatives" RELATED [ChEBI] +synonym: "carbohydrate acid derivative anions" RELATED [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion +relationship: has_functional_parent CHEBI:33721 ! carbohydrate acid anion +relationship: is_conjugate_base_of CHEBI:63436 ! carbohydrate acid derivative + +[Term] +id: CHEBI:63561 +name: ketoaldonate derivative +namespace: chebi_ontology +def: "A carbohydrate acid derivative anion that is formally obtained from a ketoaldonate." [] +subset: 3_STAR +synonym: "ketoaldonate derivatives" RELATED [ChEBI] +is_a: CHEBI:63551 ! carbohydrate acid derivative anion +relationship: has_functional_parent CHEBI:24961 ! ketoaldonate + +[Term] +id: CHEBI:63563 +name: oligosaccharide derivative +namespace: chebi_ontology +def: "A carbohydrate derivative that is formally obtained from an oligosaccharide." [] +subset: 3_STAR +synonym: "O-glycosylglycoside derivative" RELATED [ChEBI] +synonym: "O-glycosylglycoside derivatives" RELATED [ChEBI] +synonym: "oligosaccharide derivatives" RELATED [ChEBI] +is_a: CHEBI:63299 ! carbohydrate derivative +relationship: has_functional_parent CHEBI:50699 ! oligosaccharide + +[Term] +id: CHEBI:63726 +name: neuroprotective agent +namespace: chebi_ontology +def: "Any compound that can be used for the treatment of neurodegenerative disorders." [] +subset: 3_STAR +synonym: "neuroprotectant" RELATED [ChEBI] +synonym: "neuroprotectants" RELATED [ChEBI] +synonym: "neuroprotective agents" RELATED [ChEBI] +is_a: CHEBI:50267 ! protective agent + +[Term] +id: CHEBI:63789 +name: N-(3-oxohexanoyl)-L-homoserine lactone +namespace: chebi_ontology +def: "An N-acyl-L-homoserine lactone having 3-oxohexanoyl as the acyl substituent." [] +subset: 3_STAR +synonym: "(S)-3-(3-ketohexanamido)-2-oxotetrahydrofuran" RELATED [ChEBI] +synonym: "(S)-3-(3-ketohexanamido)butyrolactone" RELATED [ChEBI] +synonym: "(S)-3-(3-oxohexanamido)-2-oxotetrahydrofuran" RELATED [ChEBI] +synonym: "(S)-3-(3-oxohexanamido)butyrolactone" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "213.100" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "213.23040" RELATED MASS [ChEBI] +synonym: "3-oxo-N-[(3S)-2-oxotetrahydrofuran-3-yl]hexanamide" EXACT IUPAC_NAME [IUPAC] +synonym: "C10H15NO4" RELATED FORMULA [ChEBI] +synonym: "CCCC(=O)CC(=O)N[C@H]1CCOC1=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C10H15NO4/c1-2-3-7(12)6-9(13)11-8-4-5-15-10(8)14/h8H,2-6H2,1H3,(H,11,13)/t8-/m0/s1" RELATED InChI [ChEBI] +synonym: "N-(3-ketocaproyl)-L-homoserine lactone" RELATED [ChEBI] +synonym: "N-(3-ketohexanoyl)-L-homoserine lactone" RELATED [ChEBI] +synonym: "N-(beta-ketocaproyl)-L-homoserine lactone" RELATED [ChEBI] +synonym: "YRYOXRMDHALAFL-QMMMGPOBSA-N" RELATED InChIKey [ChEBI] +xref: Reaxys:7479823 "Reaxys" +is_a: CHEBI:55474 ! N-acyl-L-homoserine lactone + +[Term] +id: CHEBI:63940 +name: sodium tungstate +namespace: chebi_ontology +def: "An inorganic sodium salt having tungstate as the counterion. Combines with hydrogen peroxide for the oxidation of secondary amines to nitrones." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "293.82000" RELATED MASS [ChEBI] +synonym: "293.910" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[Na+].[Na+].[O-][W]([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "Disodium tetraoxotungstate" RELATED [ChemIDplus] +synonym: "Disodium tungstate" RELATED [ChemIDplus] +synonym: "InChI=1S/2Na.4O.W/q2*+1;;;2*-1;" RELATED InChI [ChEBI] +synonym: "Na2O4W" RELATED FORMULA [ChEBI] +synonym: "Na2WO4" RELATED [ChEBI] +synonym: "sodium tetraoxotungstate(VI)" RELATED [ChEBI] +synonym: "Sodium tungstate(VI)" RELATED [ChemIDplus] +synonym: "Sodium tungsten oxide" RELATED [ChemIDplus] +synonym: "Sodium wolframate" RELATED [ChemIDplus] +synonym: "Tungstic acid, disodium salt" RELATED [ChemIDplus] +synonym: "XMVONEAAOPAGAO-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:13472-45-2 "ChemIDplus" +xref: Reaxys:11343345 "Reaxys" +xref: Wikipedia:Sodium_tungstate +is_a: CHEBI:38702 ! inorganic sodium salt +relationship: has_part CHEBI:46502 ! tungstate +relationship: has_role CHEBI:33893 ! reagent + +[Term] +id: CHEBI:63944 +name: macrocyclic lactone +namespace: chebi_ontology +alt_id: CHEBI:50333 +def: "Any lactone in which the cyclic carboxylic ester group forms a part of a cyclic macromolecule." [] +subset: 3_STAR +synonym: "macrocyclic lactones" RELATED [ChEBI] +is_a: CHEBI:25000 ! lactone +is_a: CHEBI:51026 ! macrocycle + +[Term] +id: CHEBI:64018 +name: protein kinase C agonist +namespace: chebi_ontology +def: "An agonist that selectively binds to and activates a protein kinase C receptor" [] +subset: 3_STAR +synonym: "protein kinase C agonists" RELATED [ChEBI] +is_a: CHEBI:64106 ! protein kinase agonist + +[Term] +id: CHEBI:64047 +name: food additive +namespace: chebi_ontology +def: "Any substance which is added to food to preserve or enhance its flavour and/or appearance." [] +subset: 3_STAR +synonym: "food additives" RELATED [ChEBI] +xref: Wikipedia:Food_additive +is_a: CHEBI:33232 ! application +is_a: CHEBI:78295 ! food component + +[Term] +id: CHEBI:64049 +name: food acidity regulator +namespace: chebi_ontology +def: "A food additive that is used to change or otherwise control the acidity or alkalinity of foods. They may be acids, bases, neutralising agents or buffering agents." [] +subset: 3_STAR +synonym: "acidity regulator" RELATED [ChEBI] +synonym: "acidity regulators" RELATED [ChEBI] +synonym: "food acidity regulators" RELATED [ChEBI] +synonym: "pH control agent" RELATED [ChEBI] +synonym: "pH control agents" RELATED [ChEBI] +xref: Wikipedia:Acidity_regulator +is_a: CHEBI:64047 ! food additive + +[Term] +id: CHEBI:64106 +name: protein kinase agonist +namespace: chebi_ontology +def: "An agonist that selectively binds to and activates a protein kinase receptor." [] +subset: 3_STAR +synonym: "protein kinase agonists" RELATED [ChEBI] +is_a: CHEBI:48705 ! agonist + +[Term] +id: CHEBI:64290 +name: erythromycin cation +namespace: chebi_ontology +def: "An organic cation obtained by protonation of any erythromycin." [] +subset: 3_STAR +synonym: "erythromycin cation" EXACT [ChEBI] +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:35274 ! ammonium ion +relationship: is_conjugate_base_of CHEBI:48923 ! erythromycin + +[Term] +id: CHEBI:64365 +name: aralkylamino compound +namespace: chebi_ontology +def: "An organic amino compound in which an aminoalkyl group is linked to an arene." [] +subset: 3_STAR +synonym: "aralkylamino compounds" RELATED [ChEBI] +is_a: CHEBI:50047 ! organic amino compound + +[Term] +id: CHEBI:64382 +name: organosulfonate salt +namespace: chebi_ontology +def: "Any organic salt prepared using an organosulfonic acid as the acid component." [] +subset: 3_STAR +synonym: "organosulfonate salts" RELATED [ChEBI] +synonym: "organosulphonate salt" RELATED [ChEBI] +synonym: "organosulphonate salts" RELATED [ChEBI] +is_a: CHEBI:24868 ! organic salt + +[Term] +id: CHEBI:64459 +name: biaryl +namespace: chebi_ontology +def: "An organic aromatic compound whose structure contains two aromatic rings or ring systems, joined to each other by a single bond." [] +subset: 3_STAR +synonym: "biaryls" RELATED [ChEBI] +is_a: CHEBI:33659 ! organic aromatic compound + +[Term] +id: CHEBI:64554 +name: tryptophan zwitterion +namespace: chebi_ontology +def: "An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of tryptophan; major species at pH 7.3." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-ammonio-3-(1H-indol-3-yl)propanoate" RELATED [IUPAC] +synonym: "2-azaniumyl-3-(1H-indol-3-yl)propanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "204.090" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "204.22520" RELATED MASS [ChEBI] +synonym: "[NH3+]C(Cc1c[nH]c2ccccc12)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "C11H12N2O2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)" RELATED InChI [ChEBI] +synonym: "QIVBCDIJIAJPQS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_tautomer_of CHEBI:27897 ! tryptophan + +[Term] +id: CHEBI:64558 +name: methionine zwitterion +namespace: chebi_ontology +def: "An amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of methionine; major species at pH 7.3." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "149.051" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "149.21100" RELATED MASS [ChEBI] +synonym: "2-ammonio-4-(methylsulfanyl)butanoate" RELATED [IUPAC] +synonym: "2-azaniumyl-4-(methylsulfanyl)butanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "C5H11NO2S" RELATED FORMULA [ChEBI] +synonym: "CSCCC([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "FFEARJCKVFRZRR-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)" RELATED InChI [ChEBI] +synonym: "methionine" RELATED [UniProt] +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_tautomer_of CHEBI:16811 ! methionine + +[Term] +id: CHEBI:64570 +name: EC 2.1.2.1 (glycine hydroxymethyltransferase) inhibitor +namespace: chebi_ontology +def: "An EC 2.1.2.* (hydroxymethyl-, formyl- and related transferases) inhibitor that interferes with the action of glycine hydroxymethyltransferase (EC 2.1.2.1)." [] +subset: 3_STAR +synonym: "5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase inhibitor" RELATED [ChEBI] +synonym: "5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase inhibitors" RELATED [ChEBI] +synonym: "allothreonine aldolase inhibitor" RELATED [ChEBI] +synonym: "allothreonine aldolase inhibitors" RELATED [ChEBI] +synonym: "EC 2.1.2.1 (glycine hydroxymethyltransferase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.1.2.1 inhibitor" RELATED [ChEBI] +synonym: "EC 2.1.2.1 inhibitors" RELATED [ChEBI] +synonym: "glycine hydroxymethyltransferase (EC 2.1.2.1) inhibitor" RELATED [ChEBI] +synonym: "glycine hydroxymethyltransferase (EC 2.1.2.1) inhibitors" RELATED [ChEBI] +synonym: "glycine hydroxymethyltransferase inhibitor" RELATED [ChEBI] +synonym: "glycine hydroxymethyltransferase inhibitors" RELATED [ChEBI] +synonym: "L-serine hydroxymethyltransferase inhibitor" RELATED [ChEBI] +synonym: "L-serine hydroxymethyltransferase inhibitors" RELATED [ChEBI] +synonym: "L-threonine aldolase inhibitor" RELATED [ChEBI] +synonym: "L-threonine aldolase inhibitors" RELATED [ChEBI] +synonym: "serine aldolase inhibitor" RELATED [ChEBI] +synonym: "serine aldolase inhibitors" RELATED [ChEBI] +synonym: "serine hydroxymethylase inhibitor" RELATED [ChEBI] +synonym: "serine hydroxymethylase inhibitors" RELATED [ChEBI] +synonym: "serine hydroxymethyltransferase inhibitor" RELATED [ChEBI] +synonym: "serine hydroxymethyltransferase inhibitors" RELATED [ChEBI] +synonym: "serine transhydroxymethylase inhibitor" RELATED [ChEBI] +synonym: "serine transhydroxymethylase inhibitors" RELATED [ChEBI] +synonym: "threonine aldolase inhibitor" RELATED [ChEBI] +synonym: "threonine aldolase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Glycine_hydroxymethyltransferase +is_a: CHEBI:76874 ! EC 2.1.2.* (hydroxymethyl-, formyl- and related transferases) inhibitor + +[Term] +id: CHEBI:64571 +name: NMDA receptor agonist +namespace: chebi_ontology +def: "An excitatory amino acid agonist which binds to NMDA receptors and triggers a response." [] +subset: 3_STAR +synonym: "N-methyl-D-aspartate receptor agonist" RELATED [ChEBI] +synonym: "N-methyl-D-aspartate receptor agonists" RELATED [ChEBI] +synonym: "NMDA receptor agonists" RELATED [ChEBI] +synonym: "NMDAR agonist" RELATED [ChEBI] +synonym: "NMDAR agonists" RELATED [ChEBI] +is_a: CHEBI:50103 ! excitatory amino acid agonist + +[Term] +id: CHEBI:64577 +name: flour treatment agent +namespace: chebi_ontology +def: "A food additive which is added to flour or dough to improve baking quality and/or colour." [] +subset: 3_STAR +synonym: "dough improver" RELATED [ChEBI] +synonym: "dough improvers" RELATED [ChEBI] +synonym: "flour treatment agent" EXACT [ChEBI] +synonym: "improving agent" RELATED [ChEBI] +synonym: "improving agents" RELATED [ChEBI] +xref: Wikipedia:Flour_treatment_agent +is_a: CHEBI:64047 ! food additive + +[Term] +id: CHEBI:64600 +name: C21-steroid hormone +namespace: chebi_ontology +def: "A steroid compound with a structure based on a 21-carbon (pregnane) skeleton that acts as a hormone." [] +subset: 3_STAR +synonym: "C21-steroid hormones" RELATED [ChEBI] +is_a: CHEBI:26764 ! steroid hormone +is_a: CHEBI:61313 ! C21-steroid + +[Term] +id: CHEBI:64641 +name: divalent inorganic cation +namespace: chebi_ontology +def: "An inorganic cation with a valency of two." [] +subset: 3_STAR +is_a: CHEBI:36915 ! inorganic cation + +[Term] +id: CHEBI:64708 +name: one-carbon compound +namespace: chebi_ontology +def: "An organic molecular entity containing a single carbon atom (C1)." [] +subset: 3_STAR +synonym: "one-carbon compounds" RELATED [ChEBI] +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:64709 +name: organic acid +namespace: chebi_ontology +def: "Any organic molecular entity that is acidic and contains carbon in covalent linkage." [] +subset: 3_STAR +synonym: "organic acids" RELATED [ChEBI] +is_a: CHEBI:50860 ! organic molecular entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:64712 +name: trivalent inorganic cation +namespace: chebi_ontology +def: "An atom or small molecule with a positive charge that does not contain carbon in covalent linkage, with a valency of three." [] +subset: 3_STAR +is_a: CHEBI:36915 ! inorganic cation + +[Term] +id: CHEBI:64857 +name: cosmetic +namespace: chebi_ontology +def: "The role played by a substance in enhancing the appearance or odour of the human body; a name given to the substance itself or to a component of it." [] +subset: 3_STAR +synonym: "cosmetic component" RELATED [ChEBI] +synonym: "cosmetics" RELATED [ChEBI] +xref: Wikipedia:Cosmetics +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:64909 +name: poison +namespace: chebi_ontology +def: "Any substance that causes disturbance to organisms by chemical reaction or other activity on the molecular scale, when a sufficient quantity is absorbed by the organism." [] +subset: 3_STAR +synonym: "poisonous agent" RELATED [ChEBI] +synonym: "poisonous agents" RELATED [ChEBI] +synonym: "poisonous substance" RELATED [ChEBI] +synonym: "poisonous substances" RELATED [ChEBI] +synonym: "poisons" RELATED [ChEBI] +synonym: "toxic agent" RELATED [ChEBI] +synonym: "toxic agents" RELATED [ChEBI] +synonym: "toxic substance" RELATED [ChEBI] +synonym: "toxic substances" RELATED [ChEBI] +xref: Wikipedia:Poison +is_a: CHEBI:24432 ! biological role + +[Term] +id: CHEBI:64911 +name: antimitotic +namespace: chebi_ontology +def: "Any compound that inhibits cell division (mitosis)." [] +subset: 3_STAR +synonym: "antimitotics" RELATED [ChEBI] +synonym: "mitosis inhibitor" RELATED [ChEBI] +synonym: "mitosis inhibitors" RELATED [ChEBI] +synonym: "mitotic inhibitor" RELATED [ChEBI] +synonym: "mitotic inhibitors" RELATED [ChEBI] +xref: Wikipedia:Mitotic_inhibitor +is_a: CHEBI:52210 ! pharmacological role + +[Term] +id: CHEBI:64912 +name: antimycobacterial drug +namespace: chebi_ontology +def: "A drug used to treat or prevent infections caused by Mycobacteria, a genus of actinobacteria. Aerobic and nonmotile, members of the genus include the pathogens responsible for causing tuberculosis and leprosy." [] +subset: 3_STAR +synonym: "antimycobacterial agent" RELATED [ChEBI] +synonym: "antimycobacterial agents" RELATED [ChEBI] +synonym: "antimycobacterial drugs" RELATED [ChEBI] +synonym: "antimycobacterials" RELATED [ChEBI] +synonym: "antimycobacterium" RELATED [ChEBI] +is_a: CHEBI:36047 ! antibacterial drug + +[Term] +id: CHEBI:64996 +name: EC 1.13.11.33 (arachidonate 15-lipoxygenase) inhibitor +namespace: chebi_ontology +def: "A lipoxygenase inhibitor that interferes with the action of arachidonate 15-lipoxygenase (EC 1.13.11.33)." [] +subset: 3_STAR +synonym: "15-lipoxygenase inhibitor" RELATED [ChEBI] +synonym: "15-lipoxygenase inhibitors" RELATED [ChEBI] +synonym: "15-LOX inhibitor" RELATED [ChEBI] +synonym: "15-LOX inhibitors" RELATED [ChEBI] +synonym: "arachidonate 15-lipoxygenase (EC 1.13.11.33) inhibitor" RELATED [ChEBI] +synonym: "arachidonate 15-lipoxygenase (EC 1.13.11.33) inhibitors" RELATED [ChEBI] +synonym: "arachidonate 15-lipoxygenase inhibitor" RELATED [ChEBI] +synonym: "arachidonate 15-lipoxygenase inhibitors" RELATED [ChEBI] +synonym: "arachidonate:oxygen 15-oxidoreductase inhibitor" RELATED [ChEBI] +synonym: "arachidonate:oxygen 15-oxidoreductase inhibitors" RELATED [ChEBI] +synonym: "EC 1.13.11.33 (arachidonate 15-lipoxygenase) inhibitors" RELATED [ChEBI] +synonym: "EC 1.13.11.33 inhibitor" RELATED [ChEBI] +synonym: "EC 1.13.11.33 inhibitors" RELATED [ChEBI] +synonym: "linoleic acid omega(6)-lipoxygenase inhibitor" RELATED [ChEBI] +synonym: "linoleic acid omega(6)-lipoxygenase inhibitors" RELATED [ChEBI] +synonym: "omega(6) lipoxygenase inhibitor" RELATED [ChEBI] +synonym: "omega(6) lipoxygenase inhibitors" RELATED [ChEBI] +is_a: CHEBI:35856 ! lipoxygenase inhibitor + +[Term] +id: CHEBI:65001 +name: EC 3.1.1.3 (triacylglycerol lipase) inhibitor +namespace: chebi_ontology +def: "Any EC 3.1.1.* (carboxylic ester hydrolase) inhibitor that inhibits the action of triacylglycerol lipase (EC 3.1.1.3)." [] +subset: 3_STAR +synonym: "butyrinase inhibitor" RELATED [ChEBI] +synonym: "butyrinase inhibitors" RELATED [ChEBI] +synonym: "cacordase inhibitor" RELATED [ChEBI] +synonym: "cacordase inhibitors" RELATED [ChEBI] +synonym: "capalase L inhibitor" RELATED [ChEBI] +synonym: "capalase L inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.1.3 (triacylglycerol lipase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.1.3 inhibitor" RELATED [ChEBI] +synonym: "EC 3.1.1.3 inhibitors" RELATED [ChEBI] +synonym: "GEH inhibitor" RELATED [ChEBI] +synonym: "GEH inhibitors" RELATED [ChEBI] +synonym: "glycerol ester hydrolase inhibitor" RELATED [ChEBI] +synonym: "glycerol ester hydrolase inhibitors" RELATED [ChEBI] +synonym: "glycerol-ester hydrolase inhibitor" RELATED [ChEBI] +synonym: "glycerol-ester hydrolase inhibitors" RELATED [ChEBI] +synonym: "heparin releasable hepatic lipase inhibitor" RELATED [ChEBI] +synonym: "heparin releasable hepatic lipase inhibitors" RELATED [ChEBI] +synonym: "hepatic lipase inhibitor" RELATED [ChEBI] +synonym: "hepatic lipase inhibitors" RELATED [ChEBI] +synonym: "hepatic monoacylglycerol acyltransferase inhibitor" RELATED [ChEBI] +synonym: "hepatic monoacylglycerol acyltransferase inhibitors" RELATED [ChEBI] +synonym: "lipase inhibitor" RELATED [ChEBI] +synonym: "lipase inhibitors" RELATED [ChEBI] +synonym: "lipazin inhibitor" RELATED [ChEBI] +synonym: "lipazin inhibitors" RELATED [ChEBI] +synonym: "liver lipase inhibitor" RELATED [ChEBI] +synonym: "liver lipase inhibitors" RELATED [ChEBI] +synonym: "pancreatic lipase inhibitor" RELATED [ChEBI] +synonym: "pancreatic lipase inhibitors" RELATED [ChEBI] +synonym: "pancreatic triacylglycerol lipase inhibitor" RELATED [ChEBI] +synonym: "pancreatic triacylglycerol lipase inhibitors" RELATED [ChEBI] +synonym: "post-heparin plasma protamine-resistant lipase inhibitor" RELATED [ChEBI] +synonym: "post-heparin plasma protamine-resistant lipase inhibitors" RELATED [ChEBI] +synonym: "PPL inhibitor" RELATED [ChEBI] +synonym: "PPL inhibitors" RELATED [ChEBI] +synonym: "salt-resistant post-heparin lipase inhibitor" RELATED [ChEBI] +synonym: "salt-resistant post-heparin lipase inhibitors" RELATED [ChEBI] +synonym: "steapsin inhibitor" RELATED [ChEBI] +synonym: "steapsin inhibitors" RELATED [ChEBI] +synonym: "triacetinase inhibitor" RELATED [ChEBI] +synonym: "triacetinase inhibitors" RELATED [ChEBI] +synonym: "triacylglycerol ester hydrolase inhibitor" RELATED [ChEBI] +synonym: "triacylglycerol ester hydrolase inhibitors" RELATED [ChEBI] +synonym: "triacylglycerol lipase (EC 3.1.1.3) inhibitor" RELATED [ChEBI] +synonym: "triacylglycerol lipase (EC 3.1.1.3) inhibitors" RELATED [ChEBI] +synonym: "triacylglycerol lipase inhibitor" RELATED [ChEBI] +synonym: "triacylglycerol lipase inhibitors" RELATED [ChEBI] +synonym: "tributyrase inhibitor" RELATED [ChEBI] +synonym: "tributyrase inhibitors" RELATED [ChEBI] +synonym: "tributyrin esterase inhibitor" RELATED [ChEBI] +synonym: "tributyrin esterase inhibitors" RELATED [ChEBI] +synonym: "tributyrinase inhibitor" RELATED [ChEBI] +synonym: "tributyrinase inhibitors" RELATED [ChEBI] +synonym: "triglyceridase inhibitor" RELATED [ChEBI] +synonym: "triglyceridase inhibitors" RELATED [ChEBI] +synonym: "triglyceride hydrolase inhibitor" RELATED [ChEBI] +synonym: "triglyceride hydrolase inhibitors" RELATED [ChEBI] +synonym: "triglyceride lipase inhibitor" RELATED [ChEBI] +synonym: "triglyceride lipase inhibitors" RELATED [ChEBI] +synonym: "triolein hydrolase inhibitor" RELATED [ChEBI] +synonym: "triolein hydrolase inhibitors" RELATED [ChEBI] +synonym: "Tween hydrolase inhibitor" RELATED [ChEBI] +synonym: "Tween hydrolase inhibitors" RELATED [ChEBI] +synonym: "tween-hydrolysing esterase inhibitor" RELATED [ChEBI] +synonym: "tween-hydrolyzing esterase inhibitors" RELATED [ChEBI] +synonym: "Tweenase inhibitor" RELATED [ChEBI] +synonym: "Tweenase inhibitors" RELATED [ChEBI] +synonym: "Tweenesterase inhibitor" RELATED [ChEBI] +synonym: "Tweenesterase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76773 ! EC 3.1.1.* (carboxylic ester hydrolase) inhibitor + +[Term] +id: CHEBI:65023 +name: anti-asthmatic agent +namespace: chebi_ontology +def: "Any compound that has anti-asthmatic effects." [] +subset: 3_STAR +synonym: "anti-asthmatic agents" RELATED [ChEBI] +synonym: "antiasthmatic agent" RELATED [ChEBI] +synonym: "antiasthmatic agents" RELATED [ChEBI] +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:65053 +name: EC 4.1.1.19 (arginine decarboxylase) inhibitor +namespace: chebi_ontology +def: "An EC 4.1.1.* (carboxy-lyase) inhibitor that interferes with the action of arginine decarboxylase (EC 4.1.1.19)." [] +subset: 3_STAR +synonym: "ADC inhibitor" RELATED [ChEBI] +synonym: "ADC inhibitors" RELATED [ChEBI] +synonym: "arginine decarboxylase (EC 4.1.1.19) inhibitor" RELATED [ChEBI] +synonym: "arginine decarboxylase (EC 4.1.1.19) inhibitors" RELATED [ChEBI] +synonym: "arginine decarboxylase inhibitor" RELATED [ChEBI] +synonym: "arginine decarboxylase inhibitors" RELATED [ChEBI] +synonym: "EC 4.1.1.19 (arginine decarboxylase) inhibitors" RELATED [ChEBI] +synonym: "EC 4.1.1.19 inhibitor" RELATED [ChEBI] +synonym: "EC 4.1.1.19 inhibitors" RELATED [ChEBI] +synonym: "L-arginine carboxy-lyase (agmatine-forming) inhibitor" RELATED [ChEBI] +synonym: "L-arginine carboxy-lyase (agmatine-forming) inhibitors" RELATED [ChEBI] +synonym: "L-arginine carboxy-lyase inhibitor" RELATED [ChEBI] +synonym: "L-arginine carboxy-lyase inhibitors" RELATED [ChEBI] +synonym: "SpeA inhibitor" RELATED [ChEBI] +synonym: "SpeA inhibitors" RELATED [ChEBI] +is_a: CHEBI:76906 ! EC 4.1.1.* (carboxy-lyase) inhibitor + +[Term] +id: CHEBI:65056 +name: EC 3.1.3.11 (fructose-bisphosphatase) inhibitor +namespace: chebi_ontology +def: "An EC 3.1.3.* (phosphoric monoester hydrolase) inhibitor that interferes with the action of fructose-bisphosphatase (EC 3.1.3.11)." [] +subset: 3_STAR +synonym: "D-fructose 1,6-diphosphatase inhibitor" RELATED [ChEBI] +synonym: "D-fructose 1,6-diphosphatase inhibitors" RELATED [ChEBI] +synonym: "D-fructose-1,6-bisphosphate 1-phosphohydrolase inhibitor" RELATED [ChEBI] +synonym: "D-fructose-1,6-bisphosphate 1-phosphohydrolase inhibitors" RELATED [ChEBI] +synonym: "D-fructose-1,6-bisphosphate phosphatase inhibitor" RELATED [ChEBI] +synonym: "D-fructose-1,6-bisphosphate phosphatase inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.3.11 (fructose-bisphosphatase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.3.11 inhibitor" RELATED [ChEBI] +synonym: "EC 3.1.3.11 inhibitors" RELATED [ChEBI] +synonym: "FBPase inhibitor" RELATED [ChEBI] +synonym: "FBPase inhibitors" RELATED [ChEBI] +synonym: "fructose 1,6-bisphosphatase inhibitor" RELATED [ChEBI] +synonym: "fructose 1,6-bisphosphatase inhibitors" RELATED [ChEBI] +synonym: "fructose 1,6-bisphosphate 1-phosphatase inhibitor" RELATED [ChEBI] +synonym: "fructose 1,6-bisphosphate 1-phosphatase inhibitors" RELATED [ChEBI] +synonym: "fructose 1,6-bisphosphate phosphatase inhibitor" RELATED [ChEBI] +synonym: "fructose 1,6-bisphosphate phosphatase inhibitors" RELATED [ChEBI] +synonym: "fructose 1,6-diphosphatase inhibitor" RELATED [ChEBI] +synonym: "fructose 1,6-diphosphatase inhibitors" RELATED [ChEBI] +synonym: "fructose 1,6-diphosphate phosphatase inhibitor" RELATED [ChEBI] +synonym: "fructose 1,6-diphosphate phosphatase inhibitors" RELATED [ChEBI] +synonym: "fructose bisphosphate phosphatase inhibitor" RELATED [ChEBI] +synonym: "fructose bisphosphate phosphatase inhibitors" RELATED [ChEBI] +synonym: "fructose diphosphatase inhibitor" RELATED [ChEBI] +synonym: "fructose diphosphatase inhibitors" RELATED [ChEBI] +synonym: "fructose diphosphate phosphatase inhibitor" RELATED [ChEBI] +synonym: "fructose diphosphate phosphatase inhibitors" RELATED [ChEBI] +synonym: "fructose-bisphosphatase (EC 3.1.3.11) inhibitor" RELATED [ChEBI] +synonym: "fructose-bisphosphatase (EC 3.1.3.11) inhibitors" RELATED [ChEBI] +synonym: "fructose-bisphosphatase inhibitor" RELATED [ChEBI] +synonym: "fructose-bisphosphatase inhibitors" RELATED [ChEBI] +synonym: "hexose bisphosphatase inhibitor" RELATED [ChEBI] +synonym: "hexose bisphosphatase inhibitors" RELATED [ChEBI] +synonym: "hexose diphosphatase inhibitor" RELATED [ChEBI] +xref: Wikipedia:Fructose_1\,6-bisphosphatase +is_a: CHEBI:76775 ! EC 3.1.3.* (phosphoric monoester hydrolase) inhibitor + +[Term] +id: CHEBI:65057 +name: adenosine A1 receptor agonist +namespace: chebi_ontology +def: "An agonist at the A1 receptor." [] +subset: 3_STAR +synonym: "adenosine A1 receptor agonists" RELATED [ChEBI] +xref: Wikipedia:Adenosine_A1_receptor +is_a: CHEBI:73311 ! adenosine receptor agonist + +[Term] +id: CHEBI:65255 +name: food preservative +namespace: chebi_ontology +def: "Substances which are added to food in order to prevent decomposition caused by microbial growth or by undesirable chemical changes." [] +subset: 3_STAR +synonym: "food preservatives" RELATED [ChEBI] +is_a: CHEBI:64047 ! food additive + +[Term] +id: CHEBI:65256 +name: antimicrobial food preservative +namespace: chebi_ontology +def: "A food preservative which prevents decomposition of food by preventing the growth of fungi or bacteria. In European countries, E-numbers for permitted food preservatives are from E200 to E299, divided into sorbates (E200-209), benzoates (E210-219), sulfites (E220-229), phenols and formates (E230-239), nitrates (E240-259), acetates (E260-269), lactates (E270-279), propionates (E280-289) and others (E290-299)." [] +subset: 3_STAR +synonym: "antimicrobial food preservatives" RELATED [ChEBI] +synonym: "antimicrobial preservative" RELATED [ChEBI] +synonym: "antimicrobial preservatives" RELATED [ChEBI] +is_a: CHEBI:33281 ! antimicrobial agent +is_a: CHEBI:65255 ! food preservative + +[Term] +id: CHEBI:65259 +name: GABA antagonist +namespace: chebi_ontology +def: "A compound that inhibits the action of gamma-aminobutyric acid." [] +subset: 3_STAR +synonym: "GABA antagonists" RELATED [ChEBI] +synonym: "gamma-aminobutyric acid receptor antagonist" RELATED [ChEBI] +synonym: "gamma-aminobutyric acid receptor antagonists" RELATED [ChEBI] +xref: Wikipedia:GABA_antagonist +is_a: CHEBI:48706 ! antagonist +is_a: CHEBI:51374 ! GABA agent + +[Term] +id: CHEBI:65296 +name: primary ammonium ion +namespace: chebi_ontology +def: "An ammonium ion resulting from the protonation of the nitrogen atom of a primary amine. Major species at pH 7.3." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "17.027" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[NH3+][*]" RELATED SMILES [ChEBI] +synonym: "a primary amine" RELATED [UniProt] +synonym: "H3NR" RELATED FORMULA [ChEBI] +synonym: "substituted ammonium" RELATED [ChEBI] +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:35274 ! ammonium ion +relationship: is_conjugate_acid_of CHEBI:32877 ! primary amine + +[Term] +id: CHEBI:65327 +name: D-xylose +namespace: chebi_ontology +def: "Any xylose with D-configuration." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.12990" RELATED MASS [ChEBI] +synonym: "C10H15O5" RELATED FORMULA [ChEBI] +xref: HMDB:HMDB00098 +is_a: CHEBI:18222 ! xylose +relationship: is_enantiomer_of CHEBI:65328 ! L-xylose + +[Term] +id: CHEBI:65328 +name: L-xylose +namespace: chebi_ontology +def: "Any xylose with L-configuration." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "150.12990" RELATED MASS [ChEBI] +synonym: "C10H15O5" RELATED FORMULA [ChEBI] +is_a: CHEBI:18222 ! xylose +relationship: is_enantiomer_of CHEBI:65327 ! D-xylose + +[Term] +id: CHEBI:6650 +name: malic acid +namespace: chebi_ontology +def: "A 2-hydroxydicarboxylic acid that is succinic acid in which one of the hydrogens attached to a carbon is replaced by a hydroxy group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "134.022" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "134.08744" RELATED MASS [ChEBI] +synonym: "2-Hydroxybutanedioic acid" RELATED [KEGG_COMPOUND] +synonym: "2-hydroxybutanedioic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "2-Hydroxyethane-1,2-dicarboxylic acid" RELATED [HMDB] +synonym: "2-Hydroxysuccinic acid" RELATED [HMDB] +synonym: "Aepfelsaeure" RELATED [ChEBI] +synonym: "alpha-hydroxysuccinic acid" RELATED [HMDB] +synonym: "apple acid" RELATED [NIST_Chemistry_WebBook] +synonym: "BJEPYKJPYRNKOW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "C4H6O5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "DL-Malic acid" RELATED [HMDB] +synonym: "E296" RELATED [ChEBI] +synonym: "H2mal" RELATED [IUPAC] +synonym: "hydroxybutanedioic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "hydroxysuccinic acid" RELATED [NIST_Chemistry_WebBook] +synonym: "InChI=1S/C4H6O5/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)" RELATED InChI [ChEBI] +synonym: "Malic acid" EXACT [KEGG_COMPOUND] +synonym: "OC(CC(O)=O)C(O)=O" RELATED SMILES [ChEBI] +xref: Beilstein:1723539 "Beilstein" +xref: CAS:6915-15-7 "ChemIDplus" +xref: Gmelin:3325 "Gmelin" +xref: HMDB:HMDB00744 +xref: KEGG:C00711 +xref: KEGG:D04843 +xref: MetaCyc:RS-Malate +xref: PMID:15767321 "Europe PMC" +xref: PMID:17190852 "Europe PMC" +xref: PMID:17439666 "Europe PMC" +xref: PMID:17896933 "Europe PMC" +xref: PMID:19743855 "Europe PMC" +xref: PMID:22411507 "Europe PMC" +xref: Reaxys:1723539 "Reaxys" +xref: Wikipedia:Malic_acid +is_a: CHEBI:50263 ! 2-hydroxydicarboxylic acid +is_a: CHEBI:66873 ! C4-dicarboxylic acid +relationship: has_functional_parent CHEBI:15741 ! succinic acid +relationship: has_role CHEBI:64049 ! food acidity regulator +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_acid_of CHEBI:15595 ! malate(2-) + +[Term] +id: CHEBI:66873 +name: C4-dicarboxylic acid +namespace: chebi_ontology +def: "Any dicarboxylic acid that contains four carbon atoms." [] +subset: 3_STAR +synonym: "C4-dicarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:35692 ! dicarboxylic acid +relationship: is_conjugate_acid_of CHEBI:61336 ! C4-dicarboxylate + +[Term] +id: CHEBI:66916 +name: alanine zwitterion +namespace: chebi_ontology +def: "An amino acid zwitterion arising from transfer of a proton from the carboxy to the amino group of alanine; major species at pH 7.3." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-ammoniopropanoate" RELATED [IUPAC] +synonym: "2-azaniumylpropanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "89.048" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "89.09320" RELATED MASS [ChEBI] +synonym: "C3H7NO2" RELATED FORMULA [ChEBI] +synonym: "CC([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)" RELATED InChI [ChEBI] +synonym: "QNAYBMKLOCPYGJ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_tautomer_of CHEBI:16449 ! alanine + +[Term] +id: CHEBI:66952 +name: homocysteinate +namespace: chebi_ontology +def: "An alpha-amino acid anion that is the conjugate base of homocysteine, obtained by deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "134.028" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "134.17700" RELATED MASS [ChEBI] +synonym: "2-amino-4-sulfanylbutanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "C4H8NO2S" RELATED FORMULA [ChEBI] +synonym: "FFFHZYDWPBMWHY-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H9NO2S/c5-3(1-2-8)4(6)7/h3,8H,1-2,5H2,(H,6,7)/p-1" RELATED InChI [ChEBI] +synonym: "NC(CCS)C([O-])=O" RELATED SMILES [ChEBI] +is_a: CHEBI:33558 ! alpha-amino-acid anion +relationship: has_role CHEBI:78675 ! fundamental metabolite +relationship: is_conjugate_base_of CHEBI:17230 ! homocysteine + +[Term] +id: CHEBI:66987 +name: radiation protective agent +namespace: chebi_ontology +subset: 1_STAR +synonym: "radiation protective agents" RELATED [ChEBI] +synonym: "radiation protective drug" RELATED [ChEBI] +synonym: "radiation protective drugs" RELATED [ChEBI] +is_a: CHEBI:50267 ! protective agent + +[Term] +id: CHEBI:66993 +name: tocolytic agent +namespace: chebi_ontology +def: "Any compound used to suppress premature labour and immature birth by suppressing uterine contractions." [] +subset: 3_STAR +synonym: "anti-contraction drug" RELATED [ChEBI] +synonym: "anti-contraction drugs" RELATED [ChEBI] +synonym: "anti-contraction medication" RELATED [ChEBI] +synonym: "anti-contraction medications" RELATED [ChEBI] +synonym: "labour repressant" RELATED [ChEBI] +synonym: "labour repressants" RELATED [ChEBI] +synonym: "tocolytic" RELATED [ChEBI] +synonym: "tocolytic agents" RELATED [ChEBI] +synonym: "tocolytic drug" RELATED [ChEBI] +synonym: "tocolytic drugs" RELATED [ChEBI] +synonym: "tocolytics" RELATED [ChEBI] +xref: Wikipedia:Tocolytic +is_a: CHEBI:50689 ! reproductive control drug + +[Term] +id: CHEBI:67040 +name: S-adenosyl-L-methioninate +namespace: chebi_ontology +def: "A sulfonium betaine that is a conjugate base of S-adenosyl-L-methionine obtained by the deprotonation of the carboxy group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "398.137" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "398.43700" RELATED MASS [ChEBI] +synonym: "[(3S)-3-amino-3-carboxylatopropyl](5'-deoxyadenosin-5'-yl)(methyl)sulfonioacetate" EXACT IUPAC_NAME [IUPAC] +synonym: "AdoMet" RELATED [KEGG_COMPOUND] +synonym: "C15H22N6O5S" RELATED FORMULA [ChEBI] +synonym: "C[S+](CC[C@H](N)C([O-])=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/t7-,8+,10+,11+,14+,27?/m0/s1" RELATED InChI [ChEBI] +synonym: "MEFKEPWMEQBLKI-AIRLBKTGSA-N" RELATED InChIKey [ChEBI] +synonym: "S-Adenosylmethionine" RELATED [KEGG_COMPOUND] +synonym: "SAM" RELATED [KEGG_COMPOUND] +xref: CAS:29908-03-0 "KEGG COMPOUND" +xref: Drug_Central:2414 "DrugCentral" +xref: KEGG:C00019 +xref: KNApSAcK:C00007347 +xref: PDBeChem:SAM +xref: PMID:25628954 "Europe PMC" +is_a: CHEBI:35282 ! sulfonium betaine +relationship: has_functional_parent CHEBI:32631 ! L-methioninate +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:15414 ! S-adenosyl-L-methionine + +[Term] +id: CHEBI:67052 +name: glyphosate(2-) +namespace: chebi_ontology +def: "An organophosphate oxoanion obtained by the deprotonation of the carboxy and one of the phosphate OH groups of glyphosate." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "166.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "167.05720" RELATED MASS [ChEBI] +synonym: "C3H6NO5P" RELATED FORMULA [ChEBI] +synonym: "glyphosate anion(2-)" RELATED [ChEBI] +synonym: "InChI=1S/C3H8NO5P/c5-3(6)1-4-2-10(7,8)9/h4H,1-2H2,(H,5,6)(H2,7,8,9)/p-2" RELATED InChI [ChEBI] +synonym: "OP([O-])(=O)CNCC([O-])=O" RELATED SMILES [ChEBI] +synonym: "XDDAORKBJWWYJS-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "{[(hydroxyphosphinato)methyl]amino}acetate" EXACT IUPAC_NAME [IUPAC] +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:133673 ! glyphosate(1-) +relationship: is_conjugate_base_of CHEBI:27744 ! glyphosate + +[Term] +id: CHEBI:67079 +name: anti-inflammatory agent +namespace: chebi_ontology +def: "Any compound that has anti-inflammatory effects." [] +subset: 3_STAR +synonym: "anti-inflammatory agents" RELATED [ChEBI] +synonym: "antiinflammatory agent" RELATED [ChEBI] +synonym: "antiinflammatory agents" RELATED [ChEBI] +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:67142 +name: nucleobase analogue +namespace: chebi_ontology +def: "A molecule that can substitute for a normal nucleobase in nucleic acids." [] +subset: 3_STAR +synonym: "base analog" RELATED [ChEBI] +synonym: "base analogs" RELATED [ChEBI] +synonym: "base analogue" RELATED [ChEBI] +synonym: "base analogues" RELATED [ChEBI] +synonym: "nucleobase analog" RELATED [ChEBI] +synonym: "nucleobase analogs" RELATED [ChEBI] +synonym: "nucleobase analogues" RELATED [ChEBI] +xref: Wikipedia:Base_analog +is_a: CHEBI:33832 ! organic cyclic compound + +[Term] +id: CHEBI:68452 +name: azole +namespace: chebi_ontology +def: "Any monocyclic heteroarene consisting of a five-membered ring containing nitrogen. Azoles can also contain one or more other non-carbon atoms, such as nitrogen, sulfur or oxygen." [] +subset: 3_STAR +synonym: "azoles" RELATED [ChEBI] +xref: Wikipedia:Azole +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound +is_a: CHEBI:38179 ! monocyclic heteroarene + +[Term] +id: CHEBI:68495 +name: apoptosis inducer +namespace: chebi_ontology +def: "Any substance that induces the process of apoptosis (programmed cell death) in multi-celled organisms." [] +subset: 3_STAR +synonym: "apoptosis inducers" RELATED [ChEBI] +synonym: "Type I cell-death inducer" RELATED [ChEBI] +synonym: "Type I cell-death inducers" RELATED [ChEBI] +synonym: "Type I programmed cell-death inducer" RELATED [ChEBI] +synonym: "Type I programmed cell-death inducers" RELATED [ChEBI] +is_a: CHEBI:52206 ! biochemical role + +[Term] +id: CHEBI:70709 +name: progesterone receptor agonist +namespace: chebi_ontology +def: "A hormone agonist that binds to and activates progesterone receptors." [] +subset: 3_STAR +synonym: "PR agonist" RELATED [ChEBI] +synonym: "PR agonists" RELATED [ChEBI] +synonym: "progesterone receptor agonists" RELATED [ChEBI] +is_a: CHEBI:51060 ! hormone agonist + +[Term] +id: CHEBI:70727 +name: topoisomerase inhibitor +namespace: chebi_ontology +def: "An EC 5.99.1.* (miscellaneous isomerase) inhibitor that interferes with the action of any of the topoisomerases (enzymes that regulate the overwinding or underwinding of DNA)." [] +subset: 3_STAR +synonym: "topoisomerase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Topoisomerase +is_a: CHEBI:76830 ! EC 5.99.1.* (miscellaneous isomerase) inhibitor + +[Term] +id: CHEBI:70770 +name: Aurora kinase inhibitor +namespace: chebi_ontology +def: "Any protein kinase inhibitor that inhibits the action of an Aurora kinase (a group of serine/threonine kinases that are essential for cell proliferation)." [] +subset: 3_STAR +synonym: "Aurora kinase inhibitors" RELATED [ChEBI] +xref: PMID:19369091 "Europe PMC" +xref: PMID:21147253 "Europe PMC" +xref: PMID:22350019 "Europe PMC" +is_a: CHEBI:37699 ! protein kinase inhibitor + +[Term] +id: CHEBI:70977 +name: alkane-alpha,omega-diammonium(2+) +namespace: chebi_ontology +def: "An organic cation obtained by protonation of the amino groups of any alkane-alpha,omega-diamine; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(CH2)n.C2H10N2" RELATED FORMULA [ChEBI] +synonym: "+2" RELATED CHARGE [ChEBI] +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:35274 ! ammonium ion +relationship: is_conjugate_acid_of CHEBI:35411 ! alkane-alpha,omega-diamine + +[Term] +id: CHEBI:71300 +name: EC 2.* (transferase) inhibitor +namespace: chebi_ontology +def: "An enzyme inhibitor that inhibits the action of a transferase (EC 2.*)" [] +subset: 3_STAR +synonym: "EC 2 inhibitor" RELATED [ChEBI] +synonym: "EC 2 inhibitors" RELATED [ChEBI] +synonym: "EC 2.* (transferase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.* inhibitor" RELATED [ChEBI] +synonym: "EC 2.* inhibitors" RELATED [ChEBI] +synonym: "transferase inhibitor" RELATED [ChEBI] +synonym: "transferase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Transferase +is_a: CHEBI:23924 ! enzyme inhibitor + +[Term] +id: CHEBI:71315 +name: N'-monoacetylchitobiose-6'-phosphate(1-) +namespace: chebi_ontology +def: "An organophosphate oxoanion that is the conjugate base of N-monoacetylchitobiose-6-phosphate, obtained by deprotonation of the phosphate OH groups and protonation of the free amino group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "2-acetamido-2-deoxy-6-O-phosphonato-beta-D-glucopyranosyl-(1->4)-2-azaniumyl-2-deoxy-D-glucopyranose" EXACT IUPAC_NAME [IUPAC] +synonym: "4-O-(2-acetamido-2-deoxy-6-O-phosphonato-beta-D-glucopyranosyl)-2-azaniumyl-2-deoxy-D-glucopyranose" RELATED [IUPAC] +synonym: "461.117" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "461.33560" RELATED MASS [ChEBI] +synonym: "C14H26N2O13P" RELATED FORMULA [ChEBI] +synonym: "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](COP([O-])([O-])=O)O[C@H]1O[C@H]1[C@H](O)[C@@H]([NH3+])C(O)O[C@@H]1CO" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C14H27N2O13P/c1-4(18)16-8-11(21)9(19)6(3-26-30(23,24)25)28-14(8)29-12-5(2-17)27-13(22)7(15)10(12)20/h5-14,17,19-22H,2-3,15H2,1H3,(H,16,18)(H2,23,24,25)/p-1/t5-,6-,7-,8-,9-,10-,11-,12-,13?,14+/m1/s1" RELATED InChI [ChEBI] +synonym: "N'-monoacetylchitobiose-6'-phosphate" RELATED [UniProt] +synonym: "N-monoacetylchitobiose-6-phosphate" RELATED [MetaCyc] +synonym: "N-monoacetylchitobiose-6-phosphate(1-)" RELATED [ChEBI] +synonym: "YSOAJKLNVFWXBW-UEVOBBHASA-M" RELATED InChIKey [ChEBI] +xref: MetaCyc:CPD0-2501 "SUBMITTER" +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_base_of CHEBI:71317 ! N'-monoacetylchitobiose-6'-phosphate + +[Term] +id: CHEBI:71317 +name: N'-monoacetylchitobiose-6'-phosphate +namespace: chebi_ontology +def: "A disaccharide phosphate that is N'-monoacetylchitobiose substituted at position 6' by a phospho group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-acetamido-2-deoxy-6-O-phospho-beta-D-glucopyranosyl-(1->4)-2-amino-2-deoxy-D-glucopyranose" EXACT IUPAC_NAME [IUPAC] +synonym: "2-acetamido-2-deoxy-6-O-phospho-beta-D-glucosyl-(1->4)-2-amino-2-deoxy-D-glucose" RELATED [ChEBI] +synonym: "4-O-(2-acetamido-2-deoxy-6-O-phospho-beta-D-glucopyranosyl)-2-amino-2-deoxy-D-glucopyranose" RELATED [IUPAC] +synonym: "462.125" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "462.34350" RELATED MASS [ChEBI] +synonym: "6-O-phospho-N-acetyl-beta-D-glucosaminyl-(1->4)-D-glucosamine" RELATED [ChEBI] +synonym: "beta-D-GlcNAc-6P-(1->4)-D-GlcN" RELATED [ChEBI] +synonym: "beta-D-GlcpNAc-6P-(1->4)-D-GlcpN" RELATED [ChEBI] +synonym: "C14H27N2O13P" RELATED FORMULA [ChEBI] +synonym: "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](COP(O)(O)=O)O[C@H]1O[C@H]1[C@H](O)[C@@H](N)C(O)O[C@@H]1CO" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C14H27N2O13P/c1-4(18)16-8-11(21)9(19)6(3-26-30(23,24)25)28-14(8)29-12-5(2-17)27-13(22)7(15)10(12)20/h5-14,17,19-22H,2-3,15H2,1H3,(H,16,18)(H2,23,24,25)/t5-,6-,7-,8-,9-,10-,11-,12-,13?,14+/m1/s1" RELATED InChI [ChEBI] +synonym: "N-monoacetylchitobiose-6-phosphate" RELATED [MetaCyc] +synonym: "YSOAJKLNVFWXBW-UEVOBBHASA-N" RELATED InChIKey [ChEBI] +xref: MetaCyc:CPD0-2501 +is_a: CHEBI:22480 ! amino disaccharide +is_a: CHEBI:23843 ! disaccharide phosphate +relationship: has_functional_parent CHEBI:50675 ! beta-D-glucosaminyl-(1->4)-D-glucosamine +relationship: is_conjugate_acid_of CHEBI:71315 ! N'-monoacetylchitobiose-6'-phosphate(1-) + +[Term] +id: CHEBI:71338 +name: autoinducer +namespace: chebi_ontology +def: "A signalling molecule produced and used by bacteria participating in quorum sensing, that is, in cell-cell communication to coordinate community-wide regulation of processes such as biofilm formation, virulence, and bioluminescence in populations of bacteria. Such communication can occur both within and between different species of bacteria." [] +subset: 3_STAR +synonym: "autoinducers" RELATED [ChEBI] +xref: Wikipedia:Autoinducer +is_a: CHEBI:62488 ! signalling molecule + +[Term] +id: CHEBI:71339 +name: novobiocin(1-) +namespace: chebi_ontology +def: "An organic anion that is the conjugate base of novobiocin." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "611.224" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "611.61640" RELATED MASS [ChEBI] +synonym: "C31H35N2O11" RELATED FORMULA [ChEBI] +synonym: "CO[C@@H]1[C@@H](OC(N)=O)[C@@H](O)[C@H](Oc2ccc3c([O-])c(NC(=O)c4ccc(O)c(CC=C(C)C)c4)c(=O)oc3c2C)OC1(C)C" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C31H36N2O11/c1-14(2)7-8-16-13-17(9-11-19(16)34)27(37)33-21-22(35)18-10-12-20(15(3)24(18)42-28(21)38)41-29-23(36)25(43-30(32)39)26(40-6)31(4,5)44-29/h7,9-13,23,25-26,29,34-36H,8H2,1-6H3,(H2,32,39)(H,33,37)/p-1/t23-,25+,26-,29-/m1/s1" RELATED InChI [ChEBI] +synonym: "novobiocin" RELATED [UniProt] +synonym: "novobiocin anion" RELATED [ChEBI] +synonym: "YJQPYGGHQPGBLI-KGSXXDOSSA-M" RELATED InChIKey [ChEBI] +xref: PMID:20212112 "SUBMITTER" +is_a: CHEBI:25696 ! organic anion +relationship: is_conjugate_base_of CHEBI:28368 ! novobiocin + +[Term] +id: CHEBI:71365 +name: rifampicin zwitterion +namespace: chebi_ontology +def: "A zwitterion obtained by transfer of a proton from the 5-hydroxy group to the tertiary amino group of rifampicin." [] +subset: 3_STAR +synonym: "(2S,12Z,14E,16S,17S,18R,19R,20R,21S,22R,23S,24E)-21-acetoxy-6,9,17,19-tetrahydroxy-23-methoxy-2,4,12,16,18,20,22-heptamethyl-8-{(E)-[(4-methylpiperazin-4-ium-1-yl)imino]methyl}-1,11-dioxo-1,2-dihydro-2,7-(epoxypentadeca[1,11,13]trienoimino)naphtho[2,1-b]furan-5-olate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "822.405" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "822.94020" RELATED MASS [ChEBI] +synonym: "C43H58N4O12" RELATED FORMULA [ChEBI] +synonym: "CO[C@H]1\\C=C\\O[C@@]2(C)Oc3c(C)c([O-])c4c(O)c(NC(=O)\\C(C)=C/C=C/[C@H](C)[C@H](O)[C@@H](C)[C@@H](O)[C@@H](C)[C@H](OC(C)=O)[C@@H]1C)c(\\C=N\\N1CC[NH+](C)CC1)c(O)c4c3C2=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C43H58N4O12/c1-21-12-11-13-22(2)42(55)45-33-28(20-44-47-17-15-46(9)16-18-47)37(52)30-31(38(33)53)36(51)26(6)40-32(30)41(54)43(8,59-40)57-19-14-29(56-10)23(3)39(58-27(7)48)25(5)35(50)24(4)34(21)49/h11-14,19-21,23-25,29,34-35,39,49-53H,15-18H2,1-10H3,(H,45,55)/b12-11+,19-14+,22-13-,44-20+/t21-,23+,24+,25+,29-,34-,35+,39+,43-/m0/s1" RELATED InChI [ChEBI] +synonym: "JQXXHWHPUNPDRT-WLSIYKJHSA-N" RELATED InChIKey [ChEBI] +synonym: "rifampicin" RELATED [UniProt] +is_a: CHEBI:27369 ! zwitterion +relationship: is_tautomer_of CHEBI:28077 ! rifampicin + +[Term] +id: CHEBI:71392 +name: tetracycline(1-) +namespace: chebi_ontology +def: "An organic anion that is the conjugate base of tetracycline obtained by deprotonation of the two enolic hydroxy groups and protonation of the tertiary amino group." [] +subset: 3_STAR +synonym: "(1S,4aS,11S,11aS,12aS)-3-carbamoyl-1-(dimethylazaniumyl)-4a,7,11-trihydroxy-11-methyl-4,6-dioxo-1,4,4a,6,11,11a,12,12a-octahydrotetracene-2,5-diolate" EXACT IUPAC_NAME [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "443.145" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "443.42660" RELATED MASS [ChEBI] +synonym: "[H][C@@]12C[C@@]3([H])C(C(=O)c4c(O)cccc4[C@@]3(C)O)=C([O-])[C@]1(O)C(=O)C(C(N)=O)=C([O-])[C@H]2[NH+](C)C" RELATED SMILES [ChEBI] +synonym: "C22H23N2O8" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C22H24N2O8/c1-21(31)8-5-4-6-11(25)12(8)16(26)13-9(21)7-10-15(24(2)3)17(27)14(20(23)30)19(29)22(10,32)18(13)28/h4-6,9-10,15,25,27-28,31-32H,7H2,1-3H3,(H2,23,30)/p-1/t9-,10-,15-,21+,22-/m0/s1" RELATED InChI [ChEBI] +synonym: "OFVLGDICTFRJMM-WESIUVDSSA-M" RELATED InChIKey [ChEBI] +synonym: "tetracycline anion" RELATED [ChEBI] +is_a: CHEBI:25696 ! organic anion +relationship: is_conjugate_base_of CHEBI:27902 ! tetracycline +relationship: is_conjugate_base_of CHEBI:77932 ! tetracycline zwitterion + +[Term] +id: CHEBI:71666 +name: gamma-amino acid anion +namespace: chebi_ontology +def: "An amino-acid anion in which the amino group is situated gamma- to the carboxylate group." [] +subset: 3_STAR +synonym: "gamma-amino acid anions" RELATED [ChEBI] +is_a: CHEBI:37022 ! amino-acid anion +relationship: is_conjugate_base_of CHEBI:33707 ! gamma-amino acid + +[Term] +id: CHEBI:71671 +name: aldonate(1-) +namespace: chebi_ontology +def: "A carbohydrate acid anion obtained by deprotonation of any aldonic acid. Major structure at pH 7.3 of aldonate compounds." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "105.019" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "105.06940" RELATED MASS [ChEBI] +synonym: "aldonates" RELATED [ChEBI] +synonym: "an aldonate" RELATED [UniProt] +synonym: "C3H5O4" RELATED FORMULA [ChEBI] +is_a: CHEBI:33721 ! carbohydrate acid anion +relationship: is_conjugate_acid_of CHEBI:22301 ! aldonic acid + +[Term] +id: CHEBI:71674 +name: D-galactosamine 6-phosphate(1-) +namespace: chebi_ontology +def: "An organophosphate oxoanion that is the conjugate base of D-galactosamine 6-phosphate, obtained by deprotonation of the phosphate OH groups and protonation of the 2-amino group. Major structure at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "2-azaniumyl-2-deoxy-6-O-phosphonato-D-galactopyranose" EXACT IUPAC_NAME [IUPAC] +synonym: "258.038" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "258.14310" RELATED MASS [ChEBI] +synonym: "[NH3+][C@H]1C(O)O[C@H](COP([O-])([O-])=O)[C@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "C6H13NO8P" RELATED FORMULA [ChEBI] +synonym: "D-galactosamine 6-phosphate" RELATED [UniProt] +synonym: "InChI=1S/C6H14NO8P/c7-3-5(9)4(8)2(15-6(3)10)1-14-16(11,12)13/h2-6,8-10H,1,7H2,(H2,11,12,13)/p-1/t2-,3-,4+,5-,6?/m1/s1" RELATED InChI [ChEBI] +synonym: "XHMJOUIAFHJHBW-GASJEMHNSA-M" RELATED InChIKey [ChEBI] +xref: MetaCyc:D-GALACTOSAMINE-6-PHOSPHATE "SUBMITTER" +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: has_role CHEBI:76971 ! Escherichia coli metabolite +relationship: is_conjugate_base_of CHEBI:18232 ! D-galactosamine 6-phosphate + +[Term] +id: CHEBI:71944 +name: aldehydic acid anion +namespace: chebi_ontology +def: "A monocarboxylic acid anion resulting from the removal of a proton from the carboxy group of an aldehydic acid." [] +subset: 3_STAR +synonym: "aldehydic acid anions" RELATED [ChEBI] +synonym: "semi-aldehyde anion" RELATED [ChEBI] +synonym: "semi-aldehyde anions" RELATED [ChEBI] +synonym: "semialdehyde anion" RELATED [ChEBI] +synonym: "semialdehyde anions" RELATED [ChEBI] +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:26643 ! aldehydic acid + +[Term] +id: CHEBI:71989 +name: ortho ester +namespace: chebi_ontology +def: "Any organooxygen compound that has the general formula RC(OR(1))(OR(2))(OR(3)), where R(1), R(2), R(3) =/= H." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "59.985" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "60.00890" RELATED MASS [ChEBI] +synonym: "[*]C(O[*])(O[*])O[*]" RELATED SMILES [ChEBI] +synonym: "CO3R4" RELATED FORMULA [ChEBI] +synonym: "ortho esters" RELATED [ChEBI] +synonym: "ortho-ester" RELATED [ChEBI] +synonym: "ortho-esters" RELATED [ChEBI] +synonym: "orthoester" RELATED [ChEBI] +synonym: "orthoesters" RELATED [ChEBI] +xref: Wikipedia:Orthoester +is_a: CHEBI:36963 ! organooxygen compound + +[Term] +id: CHEBI:7203 +name: N-acetylhexosamine +namespace: chebi_ontology +subset: 2_STAR +synonym: "0" RELATED CHARGE [KEGG_COMPOUND] +synonym: "221.090" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "221.208" RELATED MASS [KEGG_COMPOUND] +synonym: "C8H15NO6" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(=O)NC1C(O)OC(CO)C(O)C1O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)" RELATED InChI [ChEBI] +synonym: "N-Acetylhexosamine" EXACT [KEGG_COMPOUND] +synonym: "OVRNDRQMDRJTHS-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: KEGG:C02711 +is_a: CHEBI:21656 ! N-acyl-hexosamine + +[Term] +id: CHEBI:72544 +name: flavonoids +namespace: chebi_ontology +def: "Any organic molecular entity whose stucture is based on derivatives of a phenyl-substituted 1-phenylpropane possessing a C15 or C16 skeleton, or such a structure which is condensed with a C6-C3 lignan precursors. The term is a 'superclass' comprising all members of the classes of flavonoid, isoflavonoid, neoflavonoid, chalcones, dihydrochalcones, aurones, pterocarpan, coumestans, rotenoid, flavonolignan, homoflavonoid and flavonoid oligomers. Originally restricted to natural products, the term is also applied to synthetic compounds related to them." [] +subset: 3_STAR +synonym: "flavonoid" RELATED [ChEBI] +xref: Wikipedia:Flavonoids +is_a: CHEBI:25806 ! oxygen molecular entity +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:72588 +name: semisynthetic derivative +namespace: chebi_ontology +def: "Any organic molecular entity derived from a natural product by partial chemical synthesis." [] +subset: 3_STAR +synonym: "semi-synthetic compound" RELATED [ChEBI] +synonym: "semi-synthetic compounds" RELATED [ChEBI] +synonym: "semi-synthetic derivative" RELATED [ChEBI] +synonym: "semi-synthetic derivatives" RELATED [ChEBI] +synonym: "semisynthetic compound" RELATED [ChEBI] +synonym: "semisynthetic compounds" RELATED [ChEBI] +synonym: "semisynthetic derivatives" RELATED [ChEBI] +xref: Wikipedia:Semisynthesis +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:72695 +name: organic molecule +namespace: chebi_ontology +def: "Any molecule that consists of at least one carbon atom as part of the electrically neutral entity." [] +subset: 3_STAR +synonym: "organic compound" RELATED [ChEBI] +synonym: "organic compounds" RELATED [ChEBI] +synonym: "organic molecules" RELATED [ChEBI] +is_a: CHEBI:25367 ! molecule +is_a: CHEBI:50860 ! organic molecular entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:72755 +name: kanamycin C(4+) +namespace: chebi_ontology +def: "An organic cation obtained by protonation of the primary amino groups of kanamycin C." [] +subset: 3_STAR +synonym: "(1R,2S,3S,4R,6S)-4,6-diazaniumyl-3-[(3-azaniumyl-3-deoxy-alpha-D-glucopyranosyl)oxy]-2-hydroxycyclohexyl 2-azaniumyl-2-deoxy-alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "+4" RELATED CHARGE [ChEBI] +synonym: "488.269" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "488.53040" RELATED MASS [ChEBI] +synonym: "[NH3+][C@H]1C[C@@H]([NH3+])[C@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H]([NH3+])[C@H]2O)[C@@H](O)[C@@H]1O[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1[NH3+]" RELATED SMILES [ChEBI] +synonym: "C18H40N4O11" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C18H36N4O11/c19-4-1-5(20)16(33-18-13(28)8(21)10(25)6(2-23)31-18)14(29)15(4)32-17-9(22)12(27)11(26)7(3-24)30-17/h4-18,23-29H,1-3,19-22H2/p+4/t4-,5+,6+,7+,8-,9+,10+,11+,12+,13+,14-,15+,16-,17+,18+/m0/s1" RELATED InChI [ChEBI] +synonym: "kanamycin C" RELATED [UniProt] +synonym: "kanamycin C tetracation" RELATED [ChEBI] +synonym: "WZDRWYJKESFZMB-FQSMHNGLSA-R" RELATED InChIKey [ChEBI] +xref: PMID:13563334 "SUBMITTER" +xref: PMID:13587408 "SUBMITTER" +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:35274 ! ammonium ion +relationship: is_conjugate_acid_of CHEBI:28185 ! kanamycin C + +[Term] +id: CHEBI:72756 +name: kanamycin X(3+) +namespace: chebi_ontology +def: "An organic cation obtained by protonation of the primary amino groups of kanamycin X." [] +subset: 3_STAR +synonym: "(1S,2R,3R,4S,6R)-4,6-diazaniumyl-3-(alpha-D-glucopyranosyloxy)-2-hydroxycyclohexyl 3-azaniumyl-3-deoxy-alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "+3" RELATED CHARGE [ChEBI] +synonym: "488.246" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "488.50720" RELATED MASS [ChEBI] +synonym: "[NH3+][C@@H]1C[C@H]([NH3+])[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O[C@H]1O[C@H](CO)[C@@H](O)[C@H]([NH3+])[C@H]1O" RELATED SMILES [ChEBI] +synonym: "C18H38N3O12" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C18H35N3O12/c19-4-1-5(20)16(33-18-13(28)12(27)10(25)7(3-23)31-18)14(29)15(4)32-17-11(26)8(21)9(24)6(2-22)30-17/h4-18,22-29H,1-3,19-21H2/p+3/t4-,5+,6-,7-,8+,9-,10-,11-,12+,13-,14-,15+,16-,17-,18-/m1/s1" RELATED InChI [ChEBI] +synonym: "kanamycin X" RELATED [UniProt] +synonym: "kanamycin X trication" RELATED [ChEBI] +synonym: "OHNBRQGGOHMIAP-NOAMYHISSA-Q" RELATED InChIKey [ChEBI] +xref: MetaCyc:CPD-4824 "SUBMITTER" +xref: PMID:21983602 "SUBMITTER" +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:35274 ! ammonium ion +relationship: is_conjugate_base_of CHEBI:72797 ! kanamycin X + +[Term] +id: CHEBI:72797 +name: kanamycin X +namespace: chebi_ontology +def: "A kanamycin that is kanamycin A in which the 6'-amino group is replaced by a hydroxy group." [] +subset: 3_STAR +synonym: "(1S,2R,3R,4S,6R)-4,6-diamino-3-(alpha-D-glucopyranosyloxy)-2-hydroxycyclohexyl 3-amino-3-deoxy-alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "485.222" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "485.48340" RELATED MASS [ChEBI] +synonym: "6'-deamino-6'-hydroxykanamycin A" RELATED [ChEBI] +synonym: "C18H35N3O12" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C18H35N3O12/c19-4-1-5(20)16(33-18-13(28)12(27)10(25)7(3-23)31-18)14(29)15(4)32-17-11(26)8(21)9(24)6(2-22)30-17/h4-18,22-29H,1-3,19-21H2/t4-,5+,6-,7-,8+,9-,10-,11-,12+,13-,14-,15+,16-,17-,18-/m1/s1" RELATED InChI [ChEBI] +synonym: "N[C@@H]1C[C@H](N)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O[C@H]1O[C@H](CO)[C@@H](O)[C@H](N)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "OHNBRQGGOHMIAP-NOAMYHISSA-N" RELATED InChIKey [ChEBI] +xref: MetaCyc:CPD-4824 +xref: PMID:21983602 "Europe PMC" +is_a: CHEBI:24951 ! kanamycins +relationship: has_functional_parent CHEBI:17630 ! kanamycin A +relationship: is_conjugate_acid_of CHEBI:72756 ! kanamycin X(3+) + +[Term] +id: CHEBI:72947 +name: kanamycin D(3+) +namespace: chebi_ontology +def: "An organic cation obtained by protonation of the primary amino groups of kanamycin D." [] +subset: 3_STAR +synonym: "(1S,2S,3R,4S,6R)-4,6-diazaniumyl-3-[(6-azaniumyl-6-deoxy-alpha-D-glucopyranosyl)oxy]-2-hydroxycyclohexyl alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "+3" RELATED CHARGE [ChEBI] +synonym: "488.246" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "488.50720" RELATED MASS [ChEBI] +synonym: "[NH3+]C[C@H]1O[C@H](O[C@@H]2[C@@H]([NH3+])C[C@@H]([NH3+])[C@H](O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "C18H38N3O12" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C18H35N3O12/c19-2-6-8(23)10(25)12(27)17(30-6)32-15-4(20)1-5(21)16(14(15)29)33-18-13(28)11(26)9(24)7(3-22)31-18/h4-18,22-29H,1-3,19-21H2/p+3/t4-,5+,6+,7+,8+,9+,10-,11-,12+,13+,14-,15+,16-,17+,18+/m0/s1" RELATED InChI [ChEBI] +synonym: "kanamycin D" RELATED [UniProt] +synonym: "NZCOZAMBHLSNDW-HNDNCJINSA-Q" RELATED InChIKey [ChEBI] +xref: MetaCyc:CPD-14138 "SUBMITTER" +xref: PMID:22374809 "SUBMITTER" +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:35274 ! ammonium ion +relationship: is_conjugate_base_of CHEBI:73079 ! kanamycin D + +[Term] +id: CHEBI:73079 +name: kanamycin D +namespace: chebi_ontology +def: "A kanamycin that is kanamycin A in which the 3''-amino group is replaced by a hydroxy group." [] +subset: 3_STAR +synonym: "(1S,2S,3R,4S,6R)-4,6-diamino-3-[(6-amino-6-deoxy-alpha-D-glucopyranosyl)oxy]-2-hydroxycyclohexyl alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3''-deamino-3''-hydroxykanamycin A" RELATED [ChEBI] +synonym: "485.222" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "485.48340" RELATED MASS [ChEBI] +synonym: "C18H35N3O12" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C18H35N3O12/c19-2-6-8(23)10(25)12(27)17(30-6)32-15-4(20)1-5(21)16(14(15)29)33-18-13(28)11(26)9(24)7(3-22)31-18/h4-18,22-29H,1-3,19-21H2/t4-,5+,6+,7+,8+,9+,10-,11-,12+,13+,14-,15+,16-,17+,18+/m0/s1" RELATED InChI [ChEBI] +synonym: "NC[C@H]1O[C@H](O[C@@H]2[C@@H](N)C[C@@H](N)[C@H](O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "NZCOZAMBHLSNDW-HNDNCJINSA-N" RELATED InChIKey [ChEBI] +xref: MetaCyc:CPD-14138 +xref: PMID:22374809 "Europe PMC" +xref: PMID:9134733 "Europe PMC" +is_a: CHEBI:24951 ! kanamycins +relationship: has_functional_parent CHEBI:17630 ! kanamycin A +relationship: is_conjugate_acid_of CHEBI:72947 ! kanamycin D(3+) + +[Term] +id: CHEBI:73181 +name: EC 1.11.1.11 (L-ascorbate peroxidase) inhibitors +namespace: chebi_ontology +def: "An EC 1.11.1.* (peroxidases) inhibitor that inhibits the action of L-ascorbate peroxidase (EC 1.11.1.11)." [] +subset: 3_STAR +synonym: "ascorbate peroxidase inhibitor" RELATED [ChEBI] +synonym: "ascorbate peroxidase inhibitors" RELATED [ChEBI] +synonym: "ascorbic acid peroxidase inhibitor" RELATED [ChEBI] +synonym: "ascorbic acid peroxidase inhibitors" RELATED [ChEBI] +synonym: "EC 1.11.1.11 (L-ascorbate peroxidase) inhibitors" EXACT [ChEBI] +synonym: "EC 1.11.1.11 inhibitor" RELATED [ChEBI] +synonym: "EC 1.11.1.11 inhibitors" RELATED [ChEBI] +synonym: "L-ascorbate peroxidase (EC 1.11.1.11) inhibitor" RELATED [ChEBI] +synonym: "L-ascorbate peroxidase (EC 1.11.1.11) inhibitors" RELATED [ChEBI] +synonym: "L-ascorbate peroxidase inhibitor" RELATED [ChEBI] +synonym: "L-ascorbate peroxidase inhibitors" RELATED [ChEBI] +synonym: "L-ascorbate:hydrogen-peroxide oxidoreductase inhibitor" RELATED [ChEBI] +synonym: "L-ascorbate:hydrogen-peroxide oxidoreductase inhibitors" RELATED [ChEBI] +synonym: "L-ascorbic acid peroxidase inhibitor" RELATED [ChEBI] +synonym: "L-ascorbic acid peroxidase inhibitors" RELATED [ChEBI] +synonym: "L-ascorbic acid-specific peroxidase inhibitor" RELATED [ChEBI] +synonym: "L-ascorbic acid-specific peroxidase inhibitors" RELATED [ChEBI] +xref: Wikipedia:L-ascorbate_peroxidase +is_a: CHEBI:75381 ! EC 1.11.1.* (peroxidases) inhibitor + +[Term] +id: CHEBI:73216 +name: EC 3.6.* (hydrolases acting on acid anhydrides) inhibitor +namespace: chebi_ontology +alt_id: CHEBI:76765 +def: "Any hydrolase inhibitor that interferes with the action of a hydrolase which acts on acid anhydrides (EC 3.6.*.*)." [] +subset: 3_STAR +synonym: "acid anhydride hydrolase inhibitor" RELATED [ChEBI] +synonym: "acid anhydride hydrolase inhibitors" RELATED [ChEBI] +synonym: "EC 3.6 inhibitor" RELATED [ChEBI] +synonym: "EC 3.6 inhibitors" RELATED [ChEBI] +synonym: "EC 3.6.* (hydrolases acting on acid anhydrides) inhibitors" RELATED [ChEBI] +synonym: "EC 3.6.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.6.* inhibitors" RELATED [ChEBI] +synonym: "EC 3.6.*.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.6.*.* inhibitors" RELATED [ChEBI] +synonym: "inhibitor of hydrolase acting on acid anhydride (EC 3.6.*)" RELATED [ChEBI] +synonym: "inhibitors of hydrolase acting on acid anhydride (EC 3.6.*)" RELATED [ChEBI] +is_a: CHEBI:76759 ! EC 3.* (hydrolase) inhibitor + +[Term] +id: CHEBI:73267 +name: oxidative phosphorylation inhibitor +namespace: chebi_ontology +def: "Any compound that inhibits oxidative phosphorylation." [] +subset: 3_STAR +synonym: "oxidative phosphorylation inhibitors" RELATED [ChEBI] +is_a: CHEBI:35222 ! inhibitor + +[Term] +id: CHEBI:73311 +name: adenosine receptor agonist +namespace: chebi_ontology +def: "An agonist at any adenosine receptor." [] +subset: 3_STAR +synonym: "adenosine receptor agonist" EXACT [ChEBI] +is_a: CHEBI:48705 ! agonist + +[Term] +id: CHEBI:73336 +name: vulnerary +namespace: chebi_ontology +def: "A drug used in treating and healing of wounds." [] +subset: 3_STAR +synonym: "vulneraries" RELATED [ChEBI] +synonym: "wound-healing agent" RELATED [ChEBI] +synonym: "wound-healing agents" RELATED [ChEBI] +synonym: "wound-healing drug" RELATED [ChEBI] +synonym: "wound-healing drugs" RELATED [ChEBI] +xref: Wikipedia:Wound_healing +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:73474 +name: acetylenic compound +namespace: chebi_ontology +def: "Any organic molecule containing a C#C bond." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "24.000" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[*]C#C[*]" RELATED SMILES [ChEBI] +synonym: "acetylenic compounds" RELATED [ChEBI] +synonym: "C#C containing compound" RELATED [ChEBI] +synonym: "C#C containing compounds" RELATED [ChEBI] +synonym: "C#C-containing compound" RELATED [ChEBI] +synonym: "C#C-containing compounds" RELATED [ChEBI] +synonym: "C2R2" RELATED FORMULA [ChEBI] +is_a: CHEBI:72695 ! organic molecule + +[Term] +id: CHEBI:73537 +name: 1,8-naphthyridine derivative +namespace: chebi_ontology +def: "Any naphthyridine derivative that is a derivative of 1,8-naphthyridine." [] +subset: 3_STAR +synonym: "1,8-naphthyridine derivatives" RELATED [ChEBI] +is_a: CHEBI:73539 ! naphthyridine derivative +relationship: has_parent_hydride CHEBI:36628 ! 1,8-naphthyridine + +[Term] +id: CHEBI:73539 +name: naphthyridine derivative +namespace: chebi_ontology +def: "Any organonitrogen heterocyclic compound that is a derivative of a naphthyridine." [] +subset: 3_STAR +synonym: "naphthyridine derivatives" RELATED [ChEBI] +is_a: CHEBI:27171 ! organic heterobicyclic compound +is_a: CHEBI:38101 ! organonitrogen heterocyclic compound +relationship: has_parent_hydride CHEBI:36624 ! naphthyridine + +[Term] +id: CHEBI:73690 +name: erythrose 4-phosphate/phosphoenolpyruvate family amino acid +namespace: chebi_ontology +def: "An L-alpha-amino acid which is biosynthesised from erythrose 4-phosphate and phosphoenolpyruvate (i.e. phenylalanine, tyrosine, and tryptophan). A closed class." [] +subset: 3_STAR +synonym: "erythrose 4-phosphate and phosphoenolpyruvate family amino acid" RELATED [ChEBI] +synonym: "erythrose 4-phosphate and phosphoenolpyruvate family amino acids" RELATED [ChEBI] +synonym: "erythrose 4-phosphate family amino acid" RELATED [ChEBI] +synonym: "erythrose 4-phosphate family amino acids" RELATED [ChEBI] +synonym: "erythrose 4-phosphate/phosphoenolpyruvate family amino acids" RELATED [ChEBI] +synonym: "phosphoenolpyruvate family amino acid" RELATED [ChEBI] +synonym: "phosphoenolpyruvate family amino acids" RELATED [ChEBI] +is_a: CHEBI:15705 ! L-alpha-amino acid +is_a: CHEBI:83813 ! proteinogenic amino acid + +[Term] +id: CHEBI:73693 +name: ketone body +namespace: chebi_ontology +def: "A carbonyl compound produced as a water-soluble byproduct when fatty acids are broken down for energy in the liver. There are three endogenous ketone bodies: acetone, acetoacetic acid, and (R)-3-hydroxybutyric acid; others may be produced as a result of the metabolism of synthetic triglycerides." [] +subset: 3_STAR +synonym: "ketone bodies" RELATED [ChEBI] +xref: PMID:10634967 "Europe PMC" +xref: PMID:19159745 "Europe PMC" +xref: PMID:22259088 "Europe PMC" +xref: PMID:22268909 "Europe PMC" +xref: PMID:22524563 "Europe PMC" +xref: PMID:22879057 "Europe PMC" +xref: PMID:23082721 "Europe PMC" +xref: PMID:23148246 "Europe PMC" +xref: PMID:23396451 "Europe PMC" +xref: PMID:23466063 "Europe PMC" +xref: PMID:23557707 "Europe PMC" +xref: Wikipedia:Ketone_body +is_a: CHEBI:36586 ! carbonyl compound +is_a: CHEBI:61697 ! fatty acid derivative +relationship: has_role CHEBI:25212 ! metabolite +relationship: has_role CHEBI:63726 ! neuroprotective agent + +[Term] +id: CHEBI:73754 +name: thiosugar +namespace: chebi_ontology +def: "A carbohydrate derivative in which one or more of the oxygens or hydroxy groups of the parent carbohydrate is replaced by sulfur or -SR, where R can be hydrogen or any group." [] +subset: 3_STAR +synonym: "thiosugars" RELATED [ChEBI] +xref: PMID:16240117 "Europe PMC" +xref: PMID:23330717 "Europe PMC" +is_a: CHEBI:33261 ! organosulfur compound +is_a: CHEBI:63299 ! carbohydrate derivative + +[Term] +id: CHEBI:74213 +name: EC 1.17.4.1 (ribonucleoside-diphosphate reductase) inhibitor +namespace: chebi_ontology +def: "An EC 1.17.* (oxidoreductase acting on CH or CH2) inhibitor that inhibits the action of ribonucleoside-diphosphate reductase (EC 1.17.4.1)." [] +subset: 3_STAR +synonym: "2'-deoxyribonucleoside-diphosphate:thioredoxin-disulfide 2'-oxidoreductase inhibitor" RELATED [ChEBI] +synonym: "2'-deoxyribonucleoside-diphosphate:thioredoxin-disulfide 2'-oxidoreductase inhibitors" RELATED [ChEBI] +synonym: "ADP reductase inhibitor" RELATED [ChEBI] +synonym: "ADP reductase inhibitors" RELATED [ChEBI] +synonym: "CDP reductase inhibitor" RELATED [ChEBI] +synonym: "CDP reductase inhibitors" RELATED [ChEBI] +synonym: "EC 1.17.4.1 (ribonucleoside-diphosphate reductase) inhibitors" RELATED [ChEBI] +synonym: "EC 1.17.4.1 inhibitor" RELATED [ChEBI] +synonym: "EC 1.17.4.1 inhibitors" RELATED [ChEBI] +synonym: "nucleoside diphosphate reductase inhibitor" RELATED [ChEBI] +synonym: "nucleoside diphosphate reductase inhibitors" RELATED [ChEBI] +synonym: "ribonucleoside diphosphate reductase inhibitor" RELATED [ChEBI] +synonym: "ribonucleoside diphosphate reductase inhibitors" RELATED [ChEBI] +synonym: "ribonucleoside-diphosphate reductase (EC 1.17.4.1) inhibitor" RELATED [ChEBI] +synonym: "ribonucleoside-diphosphate reductase (EC 1.17.4.1) inhibitors" RELATED [ChEBI] +synonym: "ribonucleoside-diphosphate reductase inhibitor" RELATED [ChEBI] +synonym: "ribonucleoside-diphosphate reductase inhibitors" RELATED [ChEBI] +synonym: "ribonucleotide diphosphate reductase inhibitor" RELATED [ChEBI] +synonym: "ribonucleotide diphosphate reductase inhibitors" RELATED [ChEBI] +synonym: "ribonucleotide reductase inhibitor" RELATED [ChEBI] +synonym: "ribonucleotide reductase inhibitors" RELATED [ChEBI] +synonym: "RR inhibitor" RELATED [ChEBI] +synonym: "RR inhibitors" RELATED [ChEBI] +synonym: "UDP reductase inhibitor" RELATED [ChEBI] +synonym: "UDP reductase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Ribonucleoside-diphosphate_reductase +is_a: CHEBI:76848 ! EC 1.17.4.* (oxidoreductase acting on CH or CH2 with a disulfide as acceptor) inhibitor + +[Term] +id: CHEBI:74324 +name: L-glyceric acid +namespace: chebi_ontology +def: "An optically active form of glyceric acid having L-configuration." [] +subset: 3_STAR +synonym: "(2S)-2,3-dihydroxypropanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "(S)-Glyceric acid" RELATED [HMDB] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "106.027" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "106.07730" RELATED MASS [ChEBI] +synonym: "C3H6O4" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C3H6O4/c4-1-2(5)3(6)7/h2,4-5H,1H2,(H,6,7)/t2-/m0/s1" RELATED InChI [ChEBI] +synonym: "OC[C@H](O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "RBNPOMFGQQGHHO-REOHCLBHSA-N" RELATED InChIKey [ChEBI] +xref: CAS:28305-26-2 "ChemIDplus" +xref: HMDB:HMDB06372 +xref: Reaxys:1721419 "Reaxys" +is_a: CHEBI:33508 ! glyceric acid +relationship: is_enantiomer_of CHEBI:32398 ! D-glyceric acid + +[Term] +id: CHEBI:74337 +name: D-asparagine zwitterion +namespace: chebi_ontology +def: "A D-alpha-amino acid zwitterion that is D-asparagine in which a proton has been transferred from the carboxy group to the amino group. It is the major species at pH 7.3." [] +subset: 3_STAR +synonym: "(2R)-4-amino-2-ammonio-4-oxobutanoate" RELATED [IUPAC] +synonym: "(2R)-4-amino-2-azaniumyl-4-oxobutanoate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "132.053" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "132.11790" RELATED MASS [ChEBI] +synonym: "C4H8N2O3" RELATED FORMULA [ChEBI] +synonym: "D-asparagine" RELATED [UniProt] +synonym: "DCXYFEDJOCDNAF-UWTATZPHSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/t2-/m1/s1" RELATED InChI [ChEBI] +synonym: "NC(=O)C[C@@H]([NH3+])C([O-])=O" RELATED SMILES [ChEBI] +is_a: CHEBI:59871 ! D-alpha-amino acid zwitterion +relationship: is_tautomer_of CHEBI:28159 ! D-asparagine + +[Term] +id: CHEBI:74345 +name: 1-(5-hydroxy-2-oxo-2,3-dihydroimidazol-4-yl)urea +namespace: chebi_ontology +def: "An imidazolidinone that is imidazolin-2-one substituted at positions 4 and 5 by hydroxy and ureido groups respectively." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1-(5-hydroxy-2-oxo-2,3-dihydro-1H-imidazol-4-yl)urea" EXACT IUPAC_NAME [IUPAC] +synonym: "158.044" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "158.11540" RELATED MASS [ChEBI] +synonym: "2-oxo-4-hydroxy-5-ureidoimidazoline" RELATED [ChEBI] +synonym: "allantoin, enol-form" RELATED [ChEBI] +synonym: "C4H6N4O3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C4H6N4O3/c5-3(10)6-1-2(9)8-4(11)7-1/h9H,(H3,5,6,10)(H2,7,8,11)" RELATED InChI [ChEBI] +synonym: "MLVVTNIFHMERMU-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "NC(=O)Nc1[nH]c(=O)[nH]c1O" RELATED SMILES [ChEBI] +xref: PMID:20826786 "SUBMITTER" +is_a: CHEBI:47857 ! ureas +is_a: CHEBI:55370 ! imidazolidinone +relationship: has_functional_parent CHEBI:27612 ! hydantoin +relationship: is_tautomer_of CHEBI:15676 ! allantoin + +[Term] +id: CHEBI:74529 +name: antidote to paracetamol poisoning +namespace: chebi_ontology +def: "A role borne by a molecule that acts to counteract or neutralize the deleterious effects of paracetamol (acetaminophen)." [] +subset: 3_STAR +synonym: "acetaminophen poisoning antidote" RELATED [ChEBI] +synonym: "acetaminophen poisoning antidotes" RELATED [ChEBI] +synonym: "antidote to acetaminophen poisoning" RELATED [ChEBI] +synonym: "antidote to Tylenol poisoning" RELATED [ChEBI] +synonym: "antidotes to acetaminophen poisoning" RELATED [ChEBI] +synonym: "antidotes to paracetamol poisoning" RELATED [ChEBI] +synonym: "antidotes to Tylenol poisoning" RELATED [ChEBI] +synonym: "paracetamol poisoning antidote" RELATED [ChEBI] +synonym: "paracetamol poisoning antidotes" RELATED [ChEBI] +synonym: "Tylenol poisoning antidote" RELATED [ChEBI] +synonym: "Tylenol poisoning antidotes" RELATED [ChEBI] +xref: PMID:16354242 "Europe PMC" +xref: PMID:16573399 "Europe PMC" +xref: PMID:16575097 "Europe PMC" +xref: PMID:22348679 "Europe PMC" +xref: PMID:22352734 "Europe PMC" +xref: PMID:22353666 "Europe PMC" +xref: PMID:22835053 "Europe PMC" +xref: PMID:22998987 "Europe PMC" +xref: PMID:7112203 "Europe PMC" +is_a: CHEBI:50247 ! antidote + +[Term] +id: CHEBI:74711 +name: 3,6-diaminoacridine(1+) +namespace: chebi_ontology +def: "An acridinium ion resulting from the protonation of the endocyclic nitrogen of 3,6-diaminoacridine." [] +subset: 3_STAR +synonym: "+1" RELATED CHARGE [ChEBI] +synonym: "210.103" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "210.25450" RELATED MASS [ChEBI] +synonym: "3,6-diaminoacridinium" EXACT IUPAC_NAME [IUPAC] +synonym: "C13H12N3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C13H11N3/c14-10-3-1-8-5-9-2-4-11(15)7-13(9)16-12(8)6-10/h1-7H,14-15H2/p+1" RELATED InChI [ChEBI] +synonym: "Nc1ccc2cc3ccc(N)cc3[nH+]c2c1" RELATED SMILES [ChEBI] +synonym: "WDVSHHCDHLJJJR-UHFFFAOYSA-O" RELATED InChIKey [ChEBI] +is_a: CHEBI:52839 ! acridinium ion +relationship: is_conjugate_acid_of CHEBI:8452 ! 3,6-diaminoacridine +relationship: is_conjugate_base_of CHEBI:74713 ! 3,6-diaminoacridine(2+) + +[Term] +id: CHEBI:74713 +name: 3,6-diaminoacridine(2+) +namespace: chebi_ontology +def: "An acridinium ion resulting from the protonation of the endocyclic nitrogen and one of the amino groups of 3,6-diaminoacridine." [] +subset: 3_STAR +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "211.111" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "211.26240" RELATED MASS [ChEBI] +synonym: "3-amino-6-ammonioacridinium" EXACT IUPAC_NAME [IUPAC] +synonym: "C13H13N3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C13H11N3/c14-10-3-1-8-5-9-2-4-11(15)7-13(9)16-12(8)6-10/h1-7H,14-15H2/p+2" RELATED InChI [ChEBI] +synonym: "Nc1ccc2cc3ccc([NH3+])cc3[nH+]c2c1" RELATED SMILES [ChEBI] +synonym: "WDVSHHCDHLJJJR-UHFFFAOYSA-P" RELATED InChIKey [ChEBI] +is_a: CHEBI:52839 ! acridinium ion +relationship: is_conjugate_acid_of CHEBI:74711 ! 3,6-diaminoacridine(1+) + +[Term] +id: CHEBI:74783 +name: astringent +namespace: chebi_ontology +def: "A compound that causes the contraction of body tissues, typically used to reduce bleeding from minor abrasions." [] +subset: 3_STAR +synonym: "adstringent" RELATED [ChEBI] +synonym: "adstringents" RELATED [ChEBI] +synonym: "astringents" RELATED [ChEBI] +xref: Wikipedia:Astringent +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:75092 +name: morin +namespace: chebi_ontology +alt_id: CHEBI:6998 +def: "A pentahydroxyflavone that is 7-hydroxyflavonol bearing three additional hydroxy substituents at positions 2' 4' and 5." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2',3,4',5,7-Pentahydroxyflavone" RELATED [ChemIDplus] +synonym: "2',4',3,5,7-Pentahydroxyflavone" RELATED [ChemIDplus] +synonym: "2',4',5,7-Tetrahydroxyflavan-3-ol" RELATED [ChemIDplus] +synonym: "2',4',5,7-Tetrahydroxyflavonol" RELATED [HMDB] +synonym: "2-(2,4-Dihydroxyphenyl)-3,5,7-trihydroxy-4H-1-benzopyran-4-one" RELATED [HMDB] +synonym: "2-(2,4-dihydroxyphenyl)-3,5,7-trihydroxy-4H-chromen-4-one" EXACT IUPAC_NAME [IUPAC] +synonym: "3,5,7,2',4'-Pentahydroxyflavone" RELATED [KEGG_COMPOUND] +synonym: "302.043" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "302.23570" RELATED MASS [ChEBI] +synonym: "C.I.Natural Yellow 8" RELATED [KEGG_COMPOUND] +synonym: "C15H10O7" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C15H10O7/c16-6-1-2-8(9(18)3-6)15-14(21)13(20)12-10(19)4-7(17)5-11(12)22-15/h1-5,16-19,21H" RELATED InChI [ChEBI] +synonym: "Oc1ccc(c(O)c1)-c1oc2cc(O)cc(O)c2c(=O)c1O" RELATED SMILES [ChEBI] +synonym: "YXOLAZRVSSWPPT-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:480-16-0 "KEGG COMPOUND" +xref: HMDB:HMDB30796 +xref: KEGG:C10105 +xref: KNApSAcK:C00004624 +xref: LINCS:LSM-36988 +xref: LIPID_MAPS_instance:LMPK12112517 "LIPID MAPS" +xref: PMID:15516722 "Europe PMC" +xref: PMID:16806951 "Europe PMC" +xref: PMID:18629640 "Europe PMC" +xref: PMID:19539802 "Europe PMC" +xref: PMID:19774509 "Europe PMC" +xref: PMID:22740350 "Europe PMC" +xref: PMID:23030699 "Europe PMC" +xref: PMID:23254912 "Europe PMC" +xref: PMID:23279849 "Europe PMC" +xref: PMID:23352912 "Europe PMC" +xref: PMID:23384060 "Europe PMC" +xref: PMID:23432089 "Europe PMC" +xref: PMID:23590821 "Europe PMC" +xref: PMID:23757948 "Europe PMC" +xref: PMID:23952478 "Europe PMC" +xref: Reaxys:327474 "Reaxys" +xref: Wikipedia:Morin_(flavonol) +is_a: CHEBI:25883 ! pentahydroxyflavone +is_a: CHEBI:52267 ! 7-hydroxyflavonol +relationship: has_role CHEBI:22586 ! antioxidant +relationship: has_role CHEBI:25212 ! metabolite +relationship: has_role CHEBI:33282 ! antibacterial agent +relationship: has_role CHEBI:35610 ! antineoplastic agent +relationship: has_role CHEBI:35674 ! antihypertensive agent +relationship: has_role CHEBI:50276 ! EC 5.99.1.2 (DNA topoisomerase) inhibitor +relationship: has_role CHEBI:50926 ! angiogenesis modulating agent +relationship: has_role CHEBI:62868 ! hepatoprotective agent +relationship: has_role CHEBI:63726 ! neuroprotective agent +relationship: has_role CHEBI:67079 ! anti-inflammatory agent + +[Term] +id: CHEBI:75215 +name: sodium molybdate (anhydrous) +namespace: chebi_ontology +def: "An inorganic sodium salt having molybdate as the counterion." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "205.92000" RELATED MASS [ChEBI] +synonym: "207.865" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[Na+].[Na+].[O-][Mo]([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "Disodium molybdate" RELATED [ChemIDplus] +synonym: "disodium tetraoxomolybdate" RELATED [ChEBI] +synonym: "InChI=1S/Mo.2Na.4O/q;2*+1;;;2*-1" RELATED InChI [ChEBI] +synonym: "Molybdic acid, disodium salt" RELATED [ChemIDplus] +synonym: "MoNa2O4" RELATED FORMULA [ChEBI] +synonym: "Na2MoO4" RELATED [ChEBI] +synonym: "Natriummolybdat" RELATED [ChemIDplus] +synonym: "sodium dioxido(dioxo)molybdenum" EXACT IUPAC_NAME [IUPAC] +synonym: "sodium molybdate" RELATED [ChEBI] +synonym: "sodium molybdate (anh.)" RELATED [ChEBI] +synonym: "Sodium molybdate(VI)" RELATED [KEGG_COMPOUND] +synonym: "sodium orthomolybdate" RELATED [ChEBI] +synonym: "TVXXNOYZHKPKGW-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: CAS:7631-95-0 "KEGG COMPOUND" +xref: KEGG:C15455 +xref: Reaxys:11323078 "Reaxys" +xref: Wikipedia:Sodium_molybdate +is_a: CHEBI:38702 ! inorganic sodium salt +relationship: has_part CHEBI:36264 ! molybdate +relationship: has_role CHEBI:64909 ! poison + +[Term] +id: CHEBI:75381 +name: EC 1.11.1.* (peroxidases) inhibitor +namespace: chebi_ontology +def: "An EC 1.11.* (oxidoreductase acting on peroxide as donors) inhibitor that interferes with the action of any of the peroxidases (EC 1.11.1.*)." [] +subset: 3_STAR +synonym: "EC 1.11.1 inhibitor" RELATED [ChEBI] +synonym: "EC 1.11.1 inhibitors" RELATED [ChEBI] +synonym: "EC 1.11.1.* (peroxidase) inhibitor" RELATED [ChEBI] +synonym: "EC 1.11.1.* (peroxidase) inhibitors" RELATED [ChEBI] +synonym: "EC 1.11.1.* (peroxidases) inhibitors" RELATED [ChEBI] +synonym: "EC 1.11.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.11.1.* inhibitors" RELATED [ChEBI] +synonym: "inhibitor of peroxidases" RELATED [ChEBI] +synonym: "inhibitors of peroxidases" RELATED [ChEBI] +synonym: "peroxidases inhibitors" RELATED [ChEBI] +xref: Wikipedia:Peroxidases +is_a: CHEBI:76738 ! EC 1.11.* (oxidoreductase acting on peroxide as donors) inhibitor + +[Term] +id: CHEBI:75416 +name: EC 6.1.1.* (ligases forming aminoacyl tRNA and related compounds) inhibitor +namespace: chebi_ontology +def: "An EC 6.1.* (C-O bond-forming ligase) inhibitor that interferes with the action of any ligase forming aminoacyl tRNA and related compounds (EC 6.1.1.*)." [] +subset: 3_STAR +synonym: "aminoacyl tRNA synthetase inhibitor" RELATED [ChEBI] +synonym: "aminoacyl tRNA synthetase inhibitors" RELATED [ChEBI] +synonym: "EC 6.1.1.* (ligases forming aminoacyl tRNA and related compounds) inhibitors" RELATED [ChEBI] +synonym: "EC 6.1.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 6.1.1.* inhibitors" RELATED [ChEBI] +synonym: "ligases forming aminoacyl tRNA and related compounds (EC 6.1.1.*) inhibitor" RELATED [ChEBI] +synonym: "ligases forming aminoacyl tRNA and related compounds (EC 6.1.1.*) inhibitors" RELATED [ChEBI] +synonym: "tRNA synthetase inhibitor" RELATED [ChEBI] +synonym: "tRNA synthetase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76706 ! EC 6.1.* (C-O bond-forming ligase) inhibitor + +[Term] +id: CHEBI:75458 +name: carbonyl cyanide p-trifluoromethoxyphenylhydrazone +namespace: chebi_ontology +def: "A hydrazone that is hydrazonomalononitrile in which one of the hydrazine hydrogens is substituted by a p-trifluoromethoxyphenyl group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "254.042" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "254.16810" RELATED MASS [ChEBI] +synonym: "BMZRVOVNUMQTIN-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "C10H5F3N4O" RELATED FORMULA [ChEBI] +synonym: "Carbonyl cyanide 4-trifluoromethoxyphenylhydrazone" RELATED [ChemIDplus] +synonym: "FC(F)(F)Oc1ccc(NN=C(C#N)C#N)cc1" RELATED SMILES [ChEBI] +synonym: "FCCP" RELATED [ChemIDplus] +synonym: "InChI=1S/C10H5F3N4O/c11-10(12,13)18-9-3-1-7(2-4-9)16-17-8(5-14)6-15/h1-4,16H" RELATED InChI [ChEBI] +synonym: "{[4-(trifluoromethoxy)phenyl]hydrazono}malononitrile" EXACT IUPAC_NAME [IUPAC] +xref: CAS:370-86-5 "ChemIDplus" +xref: LINCS:LSM-2317 +xref: MetaCyc:CPD-10715 +xref: Patent:US2002045621 +xref: Patent:WO2007016419 +xref: PMID:20445170 "Europe PMC" +xref: PMID:21308897 "Europe PMC" +xref: PMID:22343009 "Europe PMC" +xref: PMID:23376234 "Europe PMC" +xref: PMID:23376829 "Europe PMC" +xref: PMID:23529126 "Europe PMC" +xref: PMID:23626747 "Europe PMC" +xref: PMID:23645464 "Europe PMC" +xref: PMID:23830853 "Europe PMC" +xref: PMID:23832656 "Europe PMC" +xref: PMID:23851285 "Europe PMC" +xref: PMID:23876326 "Europe PMC" +xref: PMID:23891695 "Europe PMC" +xref: Reaxys:4693268 "Reaxys" +xref: Wikipedia:Carbonyl_cyanide-p-trifluoromethoxyphenylhydrazone +is_a: CHEBI:18379 ! nitrile +is_a: CHEBI:35618 ! aromatic ether +is_a: CHEBI:37143 ! organofluorine compound +is_a: CHEBI:38532 ! hydrazone +relationship: has_functional_parent CHEBI:33189 ! hydrazonomalononitrile +relationship: has_role CHEBI:20854 ! ATP synthase inhibitor +relationship: has_role CHEBI:24869 ! ionophore + +[Term] +id: CHEBI:75494 +name: serine hydroxamate +namespace: chebi_ontology +def: "A hydroxamic acid obtained by formal condensation of the carboxy group of serine with the amino group of hydroxylamine." [] +subset: 3_STAR +synonym: "(+-)-serine hydroxamate" RELATED [ChEBI] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "120.053" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "120.10720" RELATED MASS [ChEBI] +synonym: "2-Amino-N,3-dihydroxypropanamide" RELATED [ChemIDplus] +synonym: "C3H8N2O3" RELATED FORMULA [ChEBI] +synonym: "DL-serine hydroxamate" RELATED [ChEBI] +synonym: "InChI=1S/C3H8N2O3/c4-2(1-6)3(7)5-8/h2,6,8H,1,4H2,(H,5,7)" RELATED InChI [ChEBI] +synonym: "LELJBJGDDGUFRP-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "N-hydroxyserinamide" EXACT IUPAC_NAME [IUPAC] +synonym: "NC(CO)C(=O)NO" RELATED SMILES [ChEBI] +xref: CAS:4370-83-6 "ChemIDplus" +xref: colombos:SHX +xref: MetaCyc:CPD0-1378 +xref: PMID:12501374 "Europe PMC" +xref: PMID:18612598 "Europe PMC" +xref: PMID:19245839 "Europe PMC" +xref: PMID:4576413 "Europe PMC" +xref: PMID:4934071 "Europe PMC" +xref: PMID:6175641 "Europe PMC" +xref: PMID:6210344 "Europe PMC" +xref: PMID:7686490 "Europe PMC" +xref: Reaxys:2429002 "Reaxys" +is_a: CHEBI:24650 ! hydroxamic acid +is_a: CHEBI:26649 ! serine derivative +relationship: has_role CHEBI:75495 ! EC 6.1.1.11 (serine--tRNA ligase) inhibitor + +[Term] +id: CHEBI:75495 +name: EC 6.1.1.11 (serine--tRNA ligase) inhibitor +namespace: chebi_ontology +def: "An EC 6.1.1.* (ligases forming aminoacyl tRNA and related compounds) inhibitor that specifically inhibits the action of seryl-tRNA synthetase (EC 6.1.1.11)." [] +subset: 3_STAR +synonym: "EC 6.1.1.11 (serine--tRNA ligase) inhibitor" EXACT [ChEBI] +synonym: "EC 6.1.1.11 (serine--tRNA ligase) inhibitors" RELATED [ChEBI] +synonym: "EC 6.1.1.11 inhibitor" RELATED [ChEBI] +synonym: "EC 6.1.1.11 inhibitors" RELATED [ChEBI] +synonym: "L-serine:tRNA(Ser) ligase (AMP-forming) inhibitor" RELATED [ChEBI] +synonym: "L-serine:tRNA(Ser) ligase (AMP-forming) inhibitors" RELATED [ChEBI] +synonym: "serine translase inhibitor" RELATED [ChEBI] +synonym: "serine translase inhibitors" RELATED [ChEBI] +synonym: "serine--tRNA ligase (EC 6.1.1.11) inhibitor" RELATED [ChEBI] +synonym: "serine--tRNA ligase (EC 6.1.1.11) inhibitors" RELATED [ChEBI] +synonym: "serine--tRNA ligase inhibitor" RELATED [ChEBI] +synonym: "serine--tRNA ligase inhibitors" RELATED [ChEBI] +synonym: "SerRS inhibitor" RELATED [ChEBI] +synonym: "SerRS inhibitors" RELATED [ChEBI] +synonym: "seryl-transfer ribonucleate synthetase inhibitor" RELATED [ChEBI] +synonym: "seryl-transfer ribonucleate synthetase inhibitors" RELATED [ChEBI] +synonym: "seryl-transfer ribonucleic acid synthetase inhibitor" RELATED [ChEBI] +synonym: "seryl-transfer ribonucleic acid synthetase inhibitors" RELATED [ChEBI] +synonym: "seryl-transfer RNA synthetase inhibitor" RELATED [ChEBI] +synonym: "seryl-transfer RNA synthetase inhibitors" RELATED [ChEBI] +synonym: "seryl-tRNA synthetase inhibitor" RELATED [ChEBI] +synonym: "seryl-tRNA synthetase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Serine-tRNA_ligase +is_a: CHEBI:75416 ! EC 6.1.1.* (ligases forming aminoacyl tRNA and related compounds) inhibitor + +[Term] +id: CHEBI:75596 +name: EC 5.* (isomerase) inhibitor +namespace: chebi_ontology +def: "An enzyme inhibitor that inhibits the action of an isomerase (EC 5.*.*.*)." [] +subset: 3_STAR +synonym: "EC 5.* (isomerase) inhibitors" RELATED [ChEBI] +synonym: "EC 5.* inhibitor" RELATED [ChEBI] +synonym: "EC 5.* inhibitors" RELATED [ChEBI] +synonym: "EC 5.*.*.* inhibitor" RELATED [ChEBI] +synonym: "EC 5.*.*.* inhibitors" RELATED [ChEBI] +synonym: "isomerase (EC 5.*) inhibitor" RELATED [ChEBI] +synonym: "isomerase (EC 5.*) inhibitors" RELATED [ChEBI] +synonym: "isomerase inhibitor" RELATED [ChEBI] +synonym: "isomerase inhibitors" RELATED [ChEBI] +is_a: CHEBI:23924 ! enzyme inhibitor + +[Term] +id: CHEBI:75603 +name: EC 6.* (ligase) inhibitor +namespace: chebi_ontology +def: "Any enzyme inhibitor that interferes with the action of a ligase (EC 6.*.*.*). Ligases are enzymes that catalyse the joining of two molecules with concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate." [] +subset: 3_STAR +synonym: "EC 6.* (ligase) inhibitors" RELATED [ChEBI] +synonym: "EC 6.* inhibitor" RELATED [ChEBI] +synonym: "EC 6.* inhibitors" RELATED [ChEBI] +synonym: "EC 6.*.*.* inhibitor" RELATED [ChEBI] +synonym: "EC 6.*.*.* inhibitors" RELATED [ChEBI] +synonym: "ligase inhibitor" RELATED [ChEBI] +synonym: "ligase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Ligase +is_a: CHEBI:23924 ! enzyme inhibitor + +[Term] +id: CHEBI:75604 +name: EC 6.4.* (C-C bond-forming ligase) inhibitor +namespace: chebi_ontology +def: "A ligase inhibitor that interferes with the action of a C-C bond-forming ligase (EC 6.4.*.*)." [] +subset: 3_STAR +synonym: "C--C bond-forming ligase inhibitor" RELATED [ChEBI] +synonym: "C--C bond-forming ligase inhibitors" RELATED [ChEBI] +synonym: "C-C bond-forming ligase (EC 6.4.*) inhibitor" RELATED [ChEBI] +synonym: "C-C bond-forming ligase (EC 6.4.*) inhibitorS" RELATED [ChEBI] +synonym: "C-C bond-forming ligase inhibitor" RELATED [ChEBI] +synonym: "C-C bond-forming ligase inhibitors" RELATED [ChEBI] +synonym: "EC 6.4.* (C-C bond-forming ligase) inhibitorS" RELATED [ChEBI] +synonym: "EC 6.4.* inhibitor" RELATED [ChEBI] +synonym: "EC 6.4.* inhibitors" RELATED [ChEBI] +synonym: "EC 6.4.*.* inhibitor" RELATED [ChEBI] +synonym: "EC 6.4.*.* inhibitors" RELATED [ChEBI] +is_a: CHEBI:75603 ! EC 6.* (ligase) inhibitor + +[Term] +id: CHEBI:75763 +name: eukaryotic metabolite +namespace: chebi_ontology +def: "Any metabolite produced during a metabolic reaction in eukaryotes, the taxon that include members of the fungi, plantae and animalia kingdoms." [] +subset: 3_STAR +synonym: "eukaryotic metabolites" RELATED [ChEBI] +is_a: CHEBI:25212 ! metabolite + +[Term] +id: CHEBI:75767 +name: animal metabolite +namespace: chebi_ontology +alt_id: CHEBI:77721 +alt_id: CHEBI:77743 +def: "Any eukaryotic metabolite produced during a metabolic reaction in animals that include diverse creatures from sponges, insects to mammals." [] +subset: 3_STAR +synonym: "animal metabolites" RELATED [ChEBI] +is_a: CHEBI:75763 ! eukaryotic metabolite + +[Term] +id: CHEBI:75768 +name: mammalian metabolite +namespace: chebi_ontology +alt_id: CHEBI:77464 +alt_id: CHEBI:77744 +def: "Any animal metabolite produced during a metabolic reaction in mammals." [] +subset: 3_STAR +synonym: "mammalian metabolites" RELATED [ChEBI] +is_a: CHEBI:75767 ! animal metabolite + +[Term] +id: CHEBI:75769 +name: B vitamin +namespace: chebi_ontology +def: "Any of the group of eight water-soluble vitamins originally thought to be a single compound (vitamin B) that play important roles in cell metabolism. The group comprises vitamin B1, B2, B3, B5, B6, B7, B9, and B12. (Around 20 other compounds were once thought to be B vitamins but are no longer classified as such.)" [] +subset: 3_STAR +synonym: "B vitamins" RELATED [ChEBI] +synonym: "B-group vitamin" RELATED [ChEBI] +synonym: "B-group vitamins" RELATED [ChEBI] +synonym: "vitamin B" RELATED [ChEBI] +xref: PMID:22743781 "Europe PMC" +xref: PMID:23093174 "Europe PMC" +xref: PMID:23238962 "Europe PMC" +xref: PMID:23449527 "Europe PMC" +xref: PMID:23462586 "Europe PMC" +xref: PMID:23690582 "Europe PMC" +xref: Wikipedia:B_vitamin +is_a: CHEBI:27314 ! water-soluble vitamin +is_a: CHEBI:50733 ! nutraceutical + +[Term] +id: CHEBI:75771 +name: mouse metabolite +namespace: chebi_ontology +def: "Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus)." [] +subset: 3_STAR +synonym: "mouse metabolites" RELATED [ChEBI] +synonym: "Mus musculus metabolite" RELATED [ChEBI] +synonym: "Mus musculus metabolites" RELATED [ChEBI] +is_a: CHEBI:75768 ! mammalian metabolite + +[Term] +id: CHEBI:75772 +name: Saccharomyces cerevisiae metabolite +namespace: chebi_ontology +alt_id: CHEBI:76949 +alt_id: CHEBI:76951 +def: "Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae)." [] +subset: 3_STAR +synonym: "baker's yeast metabolite" RELATED [ChEBI] +synonym: "baker's yeast metabolites" RELATED [ChEBI] +synonym: "baker's yeast secondary metabolite" RELATED [ChEBI] +synonym: "baker's yeast secondary metabolites" RELATED [ChEBI] +synonym: "S. cerevisiae metabolite" RELATED [ChEBI] +synonym: "S. cerevisiae metabolites" RELATED [ChEBI] +synonym: "S. cerevisiae secondary metabolite" RELATED [ChEBI] +synonym: "S. cerevisiae secondary metabolites" RELATED [ChEBI] +synonym: "Saccharomyces cerevisiae metabolites" RELATED [ChEBI] +synonym: "Saccharomyces cerevisiae secondary metabolites" RELATED [ChEBI] +is_a: CHEBI:76946 ! fungal metabolite + +[Term] +id: CHEBI:75787 +name: prokaryotic metabolite +namespace: chebi_ontology +def: "Any metabolite produced during a metabolic reaction in prokaryotes, the taxon that include members of domains such as the bacteria and archaea." [] +subset: 3_STAR +synonym: "prokaryotic metabolites" RELATED [ChEBI] +is_a: CHEBI:25212 ! metabolite + +[Term] +id: CHEBI:75832 +name: iron(2+) sulfate (anhydrous) +namespace: chebi_ontology +def: "A compound of iron and sulfate in which the ratio of iron(2+) to sulfate ions is 1:1. Various hydrates occur naturally - most commonly the heptahydrate, which loses water to form the tetrahydrate at 57degreeC and the monohydrate at 65degreeC." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "151.887" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "151.90800" RELATED MASS [ChEBI] +synonym: "[Fe++].[O-]S([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "BAUYGSIQEAFULO-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "Fe(II)SO4" RELATED [ChEBI] +synonym: "FeO4S" RELATED FORMULA [ChEBI] +synonym: "ferrous sulfate" RELATED [ChemIDplus] +synonym: "ferrous sulfate (anh.)" RELATED [ChEBI] +synonym: "ferrous sulfate (anhydrous)" RELATED [ChEBI] +synonym: "ferrous sulfate anhydrous" RELATED [ChemIDplus] +synonym: "FeSO4" RELATED [ChEBI] +synonym: "InChI=1S/Fe.H2O4S/c;1-5(2,3)4/h;(H2,1,2,3,4)/q+2;/p-2" RELATED InChI [ChEBI] +synonym: "iron sulfate (1:1)" RELATED [ChemIDplus] +synonym: "iron(2+) sulfate" EXACT IUPAC_NAME [IUPAC] +synonym: "iron(2+) sulfate (anh.)" RELATED [ChEBI] +synonym: "iron(II) sulfate" RELATED [ChEBI] +synonym: "iron(II) sulfate (1:1)" RELATED [ChemIDplus] +xref: CAS:7720-78-7 "ChemIDplus" +xref: colombos:FeSO4 +xref: MetaCyc:CPD0-2386 +xref: Reaxys:4933679 "Reaxys" +xref: Wikipedia:Iron(II)_sulfate +is_a: CHEBI:24873 ! iron molecular entity +is_a: CHEBI:51336 ! metal sulfate +relationship: has_part CHEBI:29033 ! iron(2+) +relationship: has_role CHEBI:63247 ! reducing agent + +[Term] +id: CHEBI:7596 +name: nitroprusside +namespace: chebi_ontology +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "215.93834" RELATED MASS [ChEBI] +synonym: "215.948" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "[Fe(CN)5(NO)](2-)" RELATED [IUPAC] +synonym: "ASPOIVQEUUCDQT-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "C5FeN6O" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/5CN.Fe.NO/c5*1-2;;1-2/q;;;;;2*-1" RELATED InChI [ChEBI] +synonym: "Nitroferricyanide" RELATED [ChemIDplus] +synonym: "Nitroprusside" EXACT [KEGG_COMPOUND] +synonym: "O=N[Fe--](C#N)(C#N)(C#N)(C#N)C#N" RELATED SMILES [ChEBI] +synonym: "pentacyanidonitrosylferrate(2-)" EXACT IUPAC_NAME [IUPAC] +synonym: "pentacyanidonitrosylferrate(III)" EXACT IUPAC_NAME [IUPAC] +xref: CAS:15078-28-1 "ChemIDplus" +xref: DrugBank:DB00325 +xref: KEGG:C07269 +xref: MolBase:329 +is_a: CHEBI:33892 ! iron coordination entity + +[Term] +id: CHEBI:76042 +name: aromatic amino-acid zwitterion +namespace: chebi_ontology +def: "An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any aromatic amino-acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "74.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[NH3+]C([*])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "an aromatic amino-acid" RELATED [UniProt] +synonym: "aromatic amino-acid zwitterions" RELATED [ChEBI] +synonym: "C2H4NO2R" RELATED FORMULA [ChEBI] +xref: MetaCyc:Aromatic-Amino-Acids "SUBMITTER" +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_tautomer_of CHEBI:33856 ! aromatic amino acid + +[Term] +id: CHEBI:76206 +name: xenobiotic metabolite +namespace: chebi_ontology +def: "Any metabolite produced by metabolism of a xenobiotic compound." [] +subset: 3_STAR +synonym: "xenobiotic metabolites" RELATED [ChEBI] +is_a: CHEBI:25212 ! metabolite + +[Term] +id: CHEBI:76243 +name: ferrous ammonium sulfate (anhydrous) +namespace: chebi_ontology +def: "A compound of ammonium, iron and sulfate in which the ratio of ammonium to iron(2+) to sulfate ions is 2:1:2." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "283.907" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "284.04700" RELATED MASS [ChEBI] +synonym: "[NH4+].[NH4+].[Fe++].[O-]S([O-])(=O)=O.[O-]S([O-])(=O)=O" RELATED SMILES [ChEBI] +synonym: "Ammonium ferrous sulfate" RELATED [ChemIDplus] +synonym: "Ammonium iron sulfate" RELATED [ChemIDplus] +synonym: "Ammonium iron sulfate (2:2:1)" RELATED [ChemIDplus] +synonym: "ammonium iron(2+) sulfate" EXACT IUPAC_NAME [IUPAC] +synonym: "Ammonium iron(II) sulfate" RELATED [ChemIDplus] +synonym: "Diammonium ferrous sulfate" RELATED [ChemIDplus] +synonym: "Diammonium iron sulfate" RELATED [ChemIDplus] +synonym: "FeH8N2O8S2" RELATED FORMULA [ChEBI] +synonym: "Ferrous ammonium sulfate" RELATED [ChemIDplus] +synonym: "Ferrous ammonium sulphate" RELATED [ChemIDplus] +synonym: "Ferrous diammonium disulfate" RELATED [ChemIDplus] +synonym: "IMBKASBLAKCLEM-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/Fe.2H3N.2H2O4S/c;;;2*1-5(2,3)4/h;2*1H3;2*(H2,1,2,3,4)/q+2;;;;/p-2" RELATED InChI [ChEBI] +synonym: "Mohr's salt" RELATED [ChemIDplus] +xref: CAS:10045-89-3 "ChemIDplus" +xref: PMID:22972036 "Europe PMC" +xref: Reaxys:13163104 "Reaxys" +xref: Wikipedia:Ammonium_iron(II)_sulfate +is_a: CHEBI:24873 ! iron molecular entity +is_a: CHEBI:47704 ! ammonium salt +is_a: CHEBI:51336 ! metal sulfate +relationship: has_part CHEBI:29033 ! iron(2+) + +[Term] +id: CHEBI:76413 +name: greenhouse gas +namespace: chebi_ontology +def: "A gas in an atmosphere that absorbs and emits radiation within the thermal infrared range, so contributing to the 'greenhouse effect'." [] +subset: 3_STAR +synonym: "greenhouse gases" RELATED [ChEBI] +xref: Wikipedia:Greenhouse_gas +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:76414 +name: propellant +namespace: chebi_ontology +def: "A compressed gas or liquid with a boiling point lower than room temperature which to used to propel and dispense liquids such as deodorants, insecticides, paints, etc. from aerosol cans." [] +subset: 3_STAR +synonym: "propellants" RELATED [ChEBI] +xref: PMID:22519407 "Europe PMC" +xref: PMID:24001847 "Europe PMC" +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:76551 +name: N-nitrosoureas +namespace: chebi_ontology +def: "A nitroso compound that is any urea in which one of the nitrogens is substituted by a nitroso group" [] +subset: 3_STAR +is_a: CHEBI:35800 ! nitroso compound +is_a: CHEBI:47857 ! ureas + +[Term] +id: CHEBI:76655 +name: EC 2.1.* (C1-transferase) inhibitor +namespace: chebi_ontology +def: "A transferase inhibitor inhibiting the action of transferase of a one-carbon-containing group (EC 2.1.*.*)." [] +subset: 3_STAR +synonym: "C1-transferase (EC 2.1.*) inhibitor" RELATED [ChEBI] +synonym: "C1-transferase (EC 2.1.*) inhibitors" RELATED [ChEBI] +synonym: "C1-transferase inhibitor" RELATED [ChEBI] +synonym: "C1-transferase inhibitors" RELATED [ChEBI] +synonym: "EC 2.1.* (C1-transferase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 2.1.* inhibitors" RELATED [ChEBI] +synonym: "one-carbon-containing group transferase inhibitor" RELATED [ChEBI] +synonym: "one-carbon-containing group transferase inhibitors" RELATED [ChEBI] +is_a: CHEBI:71300 ! EC 2.* (transferase) inhibitor + +[Term] +id: CHEBI:76663 +name: EC 2.5.1.* (non-methyl-alkyl or aryl transferase) inhibitor +namespace: chebi_ontology +def: "A transferase inhibitor that inhibits the transfer of an alkyl (other than methyl) or aryl group (EC 2.5.1.*)." [] +subset: 3_STAR +synonym: "alkyl/aryl (non-methyl) transferase inhibitor" RELATED [ChEBI] +synonym: "alkyl/aryl (non-methyl) transferase inhibitors" RELATED [ChEBI] +synonym: "EC 2.5.1.* (non-methyl-alkyl or aryl transferase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.5.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 2.5.1.* inhibitors" RELATED [ChEBI] +synonym: "non-methyl alkyl/aryl transferase (EC 2.5.1.*) inhibitor" RELATED [ChEBI] +synonym: "non-methyl alkyl/aryl transferase (EC 2.5.1.*) inhibitors" RELATED [ChEBI] +synonym: "non-methyl alkyl/aryl transferase inhibitor" RELATED [ChEBI] +synonym: "non-methyl alkyl/aryl transferase inhibitors" RELATED [ChEBI] +synonym: "non-methyl-alkyl or aryl transferase inhibitor" RELATED [ChEBI] +synonym: "non-methyl-alkyl or aryl transferase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76834 ! EC 2.5.* (non-methyl-alkyl or aryl transferase) inhibitor + +[Term] +id: CHEBI:76668 +name: EC 2.7.* (P-containing group transferase) inhibitor +namespace: chebi_ontology +def: "A transferase inhibitor that inhibits the action of a phosphorus-containing group transferase (EC 2.7.*.*)." [] +subset: 3_STAR +synonym: "EC 2.7.* (P-containing group transferase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.7.* (phosphorus-containing group transferase) inhibitor" RELATED [ChEBI] +synonym: "EC 2.7.* (phosphorus-containing group transferase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.7.* inhibitor" RELATED [ChEBI] +synonym: "EC 2.7.* inhibitors" RELATED [ChEBI] +synonym: "phosphorus-containing group transferase (EC 2.7.*) inhibitor" RELATED [ChEBI] +synonym: "phosphorus-containing group transferase (EC 2.7.*) inhibitors" RELATED [ChEBI] +synonym: "phosphorus-containing group transferase inhibitor" RELATED [ChEBI] +synonym: "phosphorus-containing group transferase inhibitors" RELATED [ChEBI] +is_a: CHEBI:71300 ! EC 2.* (transferase) inhibitor + +[Term] +id: CHEBI:76694 +name: EC 5.3.* (intramolecular oxidoreductase) inhibitor +namespace: chebi_ontology +def: "An isomerase inhibitor that interferes with the action of an intramolecular oxidoreductase (EC 5.3.*.*)." [] +subset: 3_STAR +synonym: "EC 5.3.* (intramolecular oxidoreductase) inhibitors" RELATED [ChEBI] +synonym: "intramolecular oxidoreductase (EC 5.3.*) inhibitor" RELATED [ChEBI] +synonym: "intramolecular oxidoreductase (EC 5.3.*) inhibitors" RELATED [ChEBI] +synonym: "intramolecular oxidoreductase inhibitor" RELATED [ChEBI] +synonym: "intramolecular oxidoreductase inhibitors" RELATED [ChEBI] +is_a: CHEBI:75596 ! EC 5.* (isomerase) inhibitor + +[Term] +id: CHEBI:76697 +name: EC 5.99.* (other isomerases) inhibitor +namespace: chebi_ontology +def: "An isomerase inhibitor that interferes with the action of any member of the group of 'other isomerases' (EC 5.99.*.*)." [] +subset: 3_STAR +synonym: "EC 5.99.* (miscellaneous isomerases) inhibitor" RELATED [ChEBI] +synonym: "EC 5.99.* (miscellaneous isomerases) inhibitors" RELATED [ChEBI] +synonym: "EC 5.99.* (other isomerase) inhibitor" RELATED [ChEBI] +synonym: "EC 5.99.* (other isomerase) inhibitors" RELATED [ChEBI] +synonym: "EC 5.99.* (other isomerases) inhibitors" RELATED [ChEBI] +synonym: "EC 5.99.* inhibitor" RELATED [ChEBI] +synonym: "EC 5.99.* inhibitors" RELATED [ChEBI] +is_a: CHEBI:75596 ! EC 5.* (isomerase) inhibitor + +[Term] +id: CHEBI:76706 +name: EC 6.1.* (C-O bond-forming ligase) inhibitor +namespace: chebi_ontology +def: "A ligase inhibitor that interferes with the action of a C-O bond-forming ligase (EC 6.1.*.*)." [] +subset: 3_STAR +synonym: "C-O bond-forming ligase (EC 6.1.*) inhibitor" RELATED [ChEBI] +synonym: "C-O bond-forming ligase (EC 6.1.*) inhibitors" RELATED [ChEBI] +synonym: "C-O bond-forming ligase inhibitor" RELATED [ChEBI] +synonym: "C-O bond-forming ligase inhibitors" RELATED [ChEBI] +synonym: "EC 6.1.* (C-O bond-forming ligase) inhibitors" RELATED [ChEBI] +synonym: "EC 6.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 6.1.* inhibitors" RELATED [ChEBI] +is_a: CHEBI:75603 ! EC 6.* (ligase) inhibitor + +[Term] +id: CHEBI:76710 +name: EC 4.* (lyase) inhibitor +namespace: chebi_ontology +def: "An enzyme inhibitor which interferes with the action of a lyase (EC 4.*.*.*). Lyases are enzymes cleaving C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation." [] +subset: 3_STAR +synonym: "EC 4.* (lyase) inhibitors" RELATED [ChEBI] +synonym: "EC 4.* inhibitor" RELATED [ChEBI] +synonym: "EC 4.* inhibitors" RELATED [ChEBI] +synonym: "EC 4.*.*.* inhibitor" RELATED [ChEBI] +synonym: "EC 4.*.*.* inhibitors" RELATED [ChEBI] +synonym: "lyase (EC 4.*) inhibitor" RELATED [ChEBI] +synonym: "lyase (EC 4.*) inhibitorS" RELATED [ChEBI] +synonym: "lyase inhibitor" RELATED [ChEBI] +synonym: "lyase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Lyase +is_a: CHEBI:23924 ! enzyme inhibitor + +[Term] +id: CHEBI:76711 +name: EC 4.1.* (C-C lyase) inhibitor +namespace: chebi_ontology +def: "A lyase inhibitor which inhibits the action of a C-C lyase (EC 4.1.*.*)." [] +subset: 3_STAR +synonym: "C-C lyase (EC 4.1.*) inhibitor" RELATED [ChEBI] +synonym: "C-C lyase (EC 4.1.*) inhibitors" RELATED [ChEBI] +synonym: "C-C lyase inhibitor" RELATED [ChEBI] +synonym: "C-C lyase inhibitors" RELATED [ChEBI] +synonym: "EC 4.1.* (C-C lyase) inhibitors" RELATED [ChEBI] +synonym: "EC 4.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 4.1.* inhibitors" RELATED [ChEBI] +is_a: CHEBI:76710 ! EC 4.* (lyase) inhibitor + +[Term] +id: CHEBI:76712 +name: EC 4.2.* (C-O lyase) inhibitor +namespace: chebi_ontology +def: "A lyase inhibitor which inhibits the action of a C-O lyase (EC 4.2.*.*)." [] +subset: 3_STAR +synonym: "C-O lyase (EC 4.2.*) inhibitor" RELATED [ChEBI] +synonym: "C-O lyase (EC 4.2.*) inhibitors" RELATED [ChEBI] +synonym: "C-O lyase inhibitor" RELATED [ChEBI] +synonym: "C-O lyase inhibitors" RELATED [ChEBI] +synonym: "EC 4.2.* (C-O lyase) inhibitors" RELATED [ChEBI] +synonym: "EC 4.2.* inhibitor" RELATED [ChEBI] +synonym: "EC 4.2.* inhibitors" RELATED [ChEBI] +is_a: CHEBI:76710 ! EC 4.* (lyase) inhibitor + +[Term] +id: CHEBI:76713 +name: EC 4.3.* (C-N lyase) inhibitor +namespace: chebi_ontology +def: "A lyase inhibitor which inhibits the action of a C-N lyase (EC 4.3.*.*)." [] +subset: 3_STAR +synonym: "C-N lyase (EC 4.3.*) inhibitor" RELATED [ChEBI] +synonym: "C-N lyase (EC 4.3.*) inhibitors" RELATED [ChEBI] +synonym: "C-N lyase inhibitor" RELATED [ChEBI] +synonym: "C-N lyase inhibitors" RELATED [ChEBI] +synonym: "EC 4.3.* (C-N lyase) inhibitors" RELATED [ChEBI] +synonym: "EC 4.3.* inhibitor" RELATED [ChEBI] +synonym: "EC 4.3.* inhibitors" RELATED [ChEBI] +is_a: CHEBI:76710 ! EC 4.* (lyase) inhibitor + +[Term] +id: CHEBI:76725 +name: EC 1.* (oxidoreductase) inhibitor +namespace: chebi_ontology +def: "An enzyme inhibitor which interferes with the action of an oxidoreductase (EC 1.*.*.*)." [] +subset: 3_STAR +synonym: "EC 1.* (oxidoreductase) inhibitors" RELATED [ChEBI] +synonym: "EC 1.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.* inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase (EC 1.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase (EC 1.*) inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Oxidoreductase +is_a: CHEBI:23924 ! enzyme inhibitor + +[Term] +id: CHEBI:76729 +name: EC 1.3.* (oxidoreductase acting on donor CH-CH group) inhibitor +namespace: chebi_ontology +def: "An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on the CH-CH group of donors (EC 1.3.*.*)." [] +subset: 3_STAR +synonym: "EC 1.3.* (oxidoreductase acting on donor CH-CH group) inhibitors" RELATED [ChEBI] +synonym: "EC 1.3.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.3.* inhibitors" RELATED [ChEBI] +synonym: "inhibitor of oxidoreductase acting on CH-CH group of donor" RELATED [ChEBI] +synonym: "inhibitor of oxidoreductase acting on CH-CH group of donors" RELATED [ChEBI] +synonym: "inhibitors of oxidoreductase acting on CH-CH group of donor" RELATED [ChEBI] +synonym: "inhibitors of oxidoreductase acting on CH-CH group of donors" RELATED [ChEBI] +synonym: "oxidoreductase acting on donor CH-CH group (EC 1.3.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on donor CH-CH group (EC 1.3.*) inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on donor CH-CH group inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on donor CH-CH group inhibitors" RELATED [ChEBI] +is_a: CHEBI:76725 ! EC 1.* (oxidoreductase) inhibitor + +[Term] +id: CHEBI:76730 +name: EC 1.4.* (oxidoreductase acting on donor CH-NH2 group) inhibitor +namespace: chebi_ontology +def: "An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on the CH-NH2 group of donors (EC 1.4.*.*)." [] +subset: 3_STAR +synonym: "EC 1.4.* (oxidoreductase acting on donor CH-NH2 group) inhibitor" EXACT [ChEBI] +synonym: "EC 1.4.* (oxidoreductase acting on donor CH-NH2 group) inhibitors" RELATED [ChEBI] +synonym: "EC 1.4.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.4.* inhibitors" RELATED [ChEBI] +synonym: "inhibitor of oxidoreductase acting on CH-NH2 group of donor" RELATED [ChEBI] +synonym: "inhibitor of oxidoreductase acting on CH-NH2 group of donors" RELATED [ChEBI] +synonym: "inhibitors of oxidoreductase acting on CH-NH2 group of donor" RELATED [ChEBI] +synonym: "inhibitors of oxidoreductase acting on CH-NH2 group of donors" RELATED [ChEBI] +synonym: "oxidoreductase acting on CH-NH2 group of donor inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on CH-NH2 group of donor inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on CH-NH2 group of donors (EC 1.4.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on CH-NH2 group of donors (EC 1.4.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76725 ! EC 1.* (oxidoreductase) inhibitor + +[Term] +id: CHEBI:76736 +name: EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor +namespace: chebi_ontology +def: "An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on a heme group of donors (EC 1.9.*.*)." [] +subset: 3_STAR +synonym: "EC 1.9.* (oxidoreductase acting on a heme group of donors) inhibitor" RELATED [ChEBI] +synonym: "EC 1.9.* (oxidoreductase acting on a heme group of donors) inhibitors" RELATED [ChEBI] +synonym: "EC 1.9.* (oxidoreductase acting on donor heme group) inhibitors" RELATED [ChEBI] +synonym: "EC 1.9.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.9.* inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on a heme group of donors (EC 1.9.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on a heme group of donors (EC 1.9.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76725 ! EC 1.* (oxidoreductase) inhibitor + +[Term] +id: CHEBI:76737 +name: EC 1.10.* (oxidoreductase acting on diphenols and related substances as donors) inhibitor +namespace: chebi_ontology +def: "An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on diphenols and related substances as donors (EC 1.10.*.*)." [] +subset: 3_STAR +synonym: "EC 1.10.* (oxidoreductase acting on diphenols and related substances as donors) inhibitors" RELATED [ChEBI] +synonym: "EC 1.10.* (oxidoreductases acting on diphenols and related substances as donors) inhibitor" RELATED [ChEBI] +synonym: "EC 1.10.* (oxidoreductases acting on diphenols and related substances as donors) inhibitors" RELATED [ChEBI] +synonym: "EC 1.10.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.10.* inhibitors" RELATED [ChEBI] +synonym: "inhibitor of an oxidoreductase acting on diphenols and related substances as donor" RELATED [ChEBI] +synonym: "inhibitor of an oxidoreductase acting on diphenols and related substances as donor (EC 1.10.*)" RELATED [ChEBI] +synonym: "inhibitor of an oxidoreductase acting on diphenols and related substances as donors" RELATED [ChEBI] +synonym: "inhibitors of an oxidoreductase acting on diphenols and related substances as donor" RELATED [ChEBI] +synonym: "inhibitors of an oxidoreductase acting on diphenols and related substances as donor (EC 1.10.*)" RELATED [ChEBI] +synonym: "inhibitors of an oxidoreductase acting on diphenols and related substances as donors" RELATED [ChEBI] +is_a: CHEBI:76725 ! EC 1.* (oxidoreductase) inhibitor + +[Term] +id: CHEBI:76738 +name: EC 1.11.* (oxidoreductase acting on peroxide as donors) inhibitor +namespace: chebi_ontology +def: "An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on peroxide as donors (EC 1.11.*.*)." [] +subset: 3_STAR +synonym: "EC 1.11.* (oxidoreductase acting on peroxide as donors) inhibitors" RELATED [ChEBI] +synonym: "EC 1.11.* (oxidoreductases acting on peroxide as donors) inhibitor" RELATED [ChEBI] +synonym: "EC 1.11.* (oxidoreductases acting on peroxide as donors) inhibitors" RELATED [ChEBI] +synonym: "EC 1.11.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.11.* inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on peroxide as donors (EC 1.11.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on peroxide as donors (EC 1.11.*) inhibitors" RELATED [ChEBI] +synonym: "oxidoreductases acting on peroxide as donors (EC 1.11.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductases acting on peroxide as donors (EC 1.11.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76725 ! EC 1.* (oxidoreductase) inhibitor + +[Term] +id: CHEBI:76740 +name: EC 1.13.* [oxidoreductase acting on single donors with incorporation of molecular oxygen (oxygenases)] inhibitor +namespace: chebi_ontology +def: "An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on single donors with incorporation of molecular oxygen (oxygenases), EC 1.13.*.*." [] +subset: 3_STAR +synonym: "EC 1.13.* [oxidoreductase acting on single donors with incorporation of molecular oxygen (oxygenases)] inhibitors" RELATED [ChEBI] +synonym: "EC 1.13.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.13.* inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on single donors with incorporation of molecular oxygen (oxygenases) (EC 1.13.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on single donors with incorporation of molecular oxygen (oxygenases) (EC 1.13.*) inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on single donors with incorporation of molecular oxygen (oxygenases) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on single donors with incorporation of molecular oxygen (oxygenases) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76725 ! EC 1.* (oxidoreductase) inhibitor + +[Term] +id: CHEBI:76741 +name: EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor +namespace: chebi_ontology +def: "An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on hydrogen as donors (EC 1.14.*.*)." [] +subset: 3_STAR +synonym: "EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitors" RELATED [ChEBI] +synonym: "EC 1.14.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.14.* inhibitors" RELATED [ChEBI] +synonym: "inhibitor of oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*)" RELATED [ChEBI] +synonym: "inhibitor of oxidoreductases acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*)" RELATED [ChEBI] +synonym: "inhibitors of oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*)" RELATED [ChEBI] +synonym: "inhibitors of oxidoreductases acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*)" RELATED [ChEBI] +synonym: "oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.*) inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen inhibitors" RELATED [ChEBI] +is_a: CHEBI:76725 ! EC 1.* (oxidoreductase) inhibitor + +[Term] +id: CHEBI:76742 +name: EC 1.15.* (oxidoreductase acting on superoxide as acceptor) inhibitor +namespace: chebi_ontology +def: "An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on superoxide as acceptor (EC 1.15.*.*)." [] +subset: 3_STAR +synonym: "EC 1.15.* (oxidoreductase acting on superoxide as acceptor) inhibitors" RELATED [ChEBI] +synonym: "EC 1.15.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.15.* inhibitors" RELATED [ChEBI] +synonym: "inhibitor of oxidoreductase acting on superoxide as acceptor" RELATED [ChEBI] +synonym: "inhibitor of oxidoreductase acting on superoxide as acceptor (EC 1.15.*)" RELATED [ChEBI] +synonym: "inhibitors of oxidoreductase acting on superoxide as acceptor" RELATED [ChEBI] +synonym: "inhibitors of oxidoreductase acting on superoxide as acceptor (EC 1.15.*)" RELATED [ChEBI] +synonym: "oxidoreductase acting on superoxide as acceptor (EC 1.15.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on superoxide as acceptor (EC 1.15.*) inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on superoxide as acceptor inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on superoxide as acceptor inhibitors" RELATED [ChEBI] +is_a: CHEBI:76725 ! EC 1.* (oxidoreductase) inhibitor + +[Term] +id: CHEBI:76744 +name: EC 1.17.* (oxidoreductase acting on CH or CH2) inhibitor +namespace: chebi_ontology +def: "An oxidoreductase inhibitor which interferes with the action of an oxidoreductase acting on CH or CH2 (EC 1.17.*.*)." [] +subset: 3_STAR +synonym: "EC 1.17.* (oxidoreductase acting on CH or CH2) inhibitors" RELATED [ChEBI] +synonym: "EC 1.17.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.17.* inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on CH or CH2 (EC 1.17.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on CH or CH2 (EC 1.17.*) inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on CH or CH2 inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on CH or CH2 inhibitors" RELATED [ChEBI] +is_a: CHEBI:76725 ! EC 1.* (oxidoreductase) inhibitor + +[Term] +id: CHEBI:76759 +name: EC 3.* (hydrolase) inhibitor +namespace: chebi_ontology +def: "Any enzyme inhibitor that interferes with the action of a hydrolase (EC 3.*.*.*)." [] +subset: 3_STAR +synonym: "EC 3.* (hydrolase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.* inhibitors" RELATED [ChEBI] +synonym: "EC 3.*.*.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.*.*.* inhibitors" RELATED [ChEBI] +synonym: "hydrolase (EC 3.*) inhibitor" RELATED [ChEBI] +synonym: "hydrolase (EC 3.*) inhibitors" RELATED [ChEBI] +synonym: "hydrolase inhibitor" RELATED [ChEBI] +synonym: "hydrolase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Hydrolase +is_a: CHEBI:23924 ! enzyme inhibitor + +[Term] +id: CHEBI:76760 +name: EC 3.1.* (ester hydrolase) inhibitor +namespace: chebi_ontology +def: "A hydrolase inhibitor that interferes with the action of any ester hydrolase (EC 3.1.*.*)." [] +subset: 3_STAR +synonym: "EC 3.1.* (ester hydrolase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.1.* inhibitors" RELATED [ChEBI] +synonym: "ester hydrolase (EC 3.1.*) inhibitor" RELATED [ChEBI] +synonym: "ester hydrolase (EC 3.1.*) inhibitors" RELATED [ChEBI] +synonym: "ester hydrolase inhibitor" RELATED [ChEBI] +synonym: "ester hydrolase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76759 ! EC 3.* (hydrolase) inhibitor + +[Term] +id: CHEBI:76761 +name: EC 3.2.* (glycosylase) inhibitor +namespace: chebi_ontology +def: "A hydrolase inhibitor that interferes with the action of any glycosylase (EC 3.2.*.*)." [] +subset: 3_STAR +synonym: "EC 3.2.* (glycosylase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.2.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.2.* inhibitors" RELATED [ChEBI] +synonym: "glycosylase (EC 3.2.*) inhibitor" RELATED [ChEBI] +synonym: "glycosylase (EC 3.2.*) inhibitors" RELATED [ChEBI] +synonym: "glycosylase inhibitor" RELATED [ChEBI] +synonym: "glycosylase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76759 ! EC 3.* (hydrolase) inhibitor + +[Term] +id: CHEBI:76764 +name: EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor +namespace: chebi_ontology +def: "Any hydrolase inhibitor that interferes with the action of a hydrolase acting on C-N bonds, other than peptide bonds (EC 3.5.*.*)." [] +subset: 3_STAR +synonym: "EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitor" RELATED [ChEBI] +synonym: "EC 3.5.* (hydrolase acting on non-peptide C-N bond) inhibitors" RELATED [ChEBI] +synonym: "EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitor" RELATED [ChEBI] +synonym: "EC 3.5.* (hydrolases acting on C-N bonds, other than peptide bonds) inhibitors" RELATED [ChEBI] +synonym: "EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitors" RELATED [ChEBI] +synonym: "EC 3.5.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.5.* inhibitors" RELATED [ChEBI] +is_a: CHEBI:76759 ! EC 3.* (hydrolase) inhibitor + +[Term] +id: CHEBI:76773 +name: EC 3.1.1.* (carboxylic ester hydrolase) inhibitor +namespace: chebi_ontology +def: "An EC 3.1.* (ester hydrolase) inhibitor that interferes with the action of a carboxylic ester hydrolase (EC 3.1.1.*)." [] +subset: 3_STAR +synonym: "carboxylic ester hydrolase (EC 3.1.1.*) inhibitor" RELATED [ChEBI] +synonym: "carboxylic ester hydrolase (EC 3.1.1.*) inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.1.* (carboxylic ester hydrolase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.1.1.* inhibitors" RELATED [ChEBI] +is_a: CHEBI:76760 ! EC 3.1.* (ester hydrolase) inhibitor + +[Term] +id: CHEBI:76775 +name: EC 3.1.3.* (phosphoric monoester hydrolase) inhibitor +namespace: chebi_ontology +def: "An EC 3.1.* (ester hydrolase) inhibitor that interferes with the action of any phosphoric monoester hydrolase (EC 3.1.3.*)." [] +subset: 3_STAR +synonym: "EC 3.1.3.* (phosphoric monoester hydrolase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.1.3.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.1.3.* inhibitors" RELATED [ChEBI] +synonym: "inhibitor of phosphoric monoester hydrolase" RELATED [ChEBI] +synonym: "inhibitor of phosphoric monoester hydrolase (EC 3.1.3.*)" RELATED [ChEBI] +synonym: "inhibitors of phosphoric monoester hydrolase" RELATED [ChEBI] +synonym: "inhibitors of phosphoric monoester hydrolase (EC 3.1.3.*)" RELATED [ChEBI] +synonym: "phosphoric monoester hydrolase (EC 3.1.3.*) inhibitor" RELATED [ChEBI] +synonym: "phosphoric monoester hydrolase (EC 3.1.3.*) inhibitors" RELATED [ChEBI] +synonym: "phosphoric monoester hydrolase inhibitor" RELATED [ChEBI] +synonym: "phosphoric monoester hydrolase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76760 ! EC 3.1.* (ester hydrolase) inhibitor + +[Term] +id: CHEBI:76787 +name: EC 3.4.11.* (aminopeptidase) inhibitor +namespace: chebi_ontology +def: "An EC 3.4.* (hydrolases acting on peptide bond) inhibitor that interferes wtih the action of any aminopeptidase (EC 3.4.11.*)." [] +subset: 3_STAR +synonym: "aminopeptidase (EC 3.4.11.*) inhibitor" RELATED [ChEBI] +synonym: "aminopeptidase (EC 3.4.11.*) inhibitors" RELATED [ChEBI] +synonym: "EC 3.4.11.* (aminopeptidase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.4.11.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.4.11.* inhibitors" RELATED [ChEBI] +is_a: CHEBI:60258 ! EC 3.4.* (hydrolases acting on peptide bond) inhibitor + +[Term] +id: CHEBI:76788 +name: EC 3.4.14.* (dipeptidyl- and tripeptidyl-peptidases) inhibitor +namespace: chebi_ontology +def: "An EC 3.4.* (hydrolases acting on peptide bond) inhibitor that interferes with the activity of any dipeptidyl- and tripeptidyl-peptidase (EC 3.4.14.*)." [] +subset: 3_STAR +synonym: "dipeptidyl- and tripeptidyl-peptidase (EC 3.4.14.*) inhibitor" RELATED [ChEBI] +synonym: "dipeptidyl- and tripeptidyl-peptidase (EC 3.4.14.*) inhibitors" RELATED [ChEBI] +synonym: "dipeptidyl- and tripeptidyl-peptidase inhibitor" RELATED [ChEBI] +synonym: "dipeptidyl- and tripeptidyl-peptidase inhibitors" RELATED [ChEBI] +synonym: "dipeptidyl- and tripeptidyl-peptidases (EC 3.4.14.*) inhibitor" RELATED [ChEBI] +synonym: "dipeptidyl- and tripeptidyl-peptidases (EC 3.4.14.*) inhibitors" RELATED [ChEBI] +synonym: "dipeptidyl- and tripeptidyl-peptidases inhibitor" RELATED [ChEBI] +synonym: "dipeptidyl- and tripeptidyl-peptidases inhibitors" RELATED [ChEBI] +synonym: "dipeptidyl-peptidases and tripeptidyl-peptidases (EC 3.4.14.*) inhibitor" RELATED [ChEBI] +synonym: "dipeptidyl-peptidases and tripeptidyl-peptidases (EC 3.4.14.*) inhibitors" RELATED [ChEBI] +synonym: "EC 3.4.14.* (dipeptidyl- and tripeptidyl-peptidases) inhibitors" RELATED [ChEBI] +synonym: "EC 3.4.14.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.4.14.* inhibitors" RELATED [ChEBI] +synonym: "EC 3.4.14.*(dipeptidyl-peptidases and tripeptidyl-peptidases) inhibitor" RELATED [ChEBI] +synonym: "EC 3.4.14.*(dipeptidyl-peptidases and tripeptidyl-peptidases) inhibitors" RELATED [ChEBI] +is_a: CHEBI:60258 ! EC 3.4.* (hydrolases acting on peptide bond) inhibitor + +[Term] +id: CHEBI:76797 +name: EC 2.5.1.18 (glutathione transferase) inhibitor +namespace: chebi_ontology +def: "An EC 2.5.1.* (non-methyl-alkyl or aryl transferase) inhibitor that interferes with the action of a glutathione transferase (EC 2.5.1.18)." [] +subset: 3_STAR +synonym: "EC 2.5.1.18 (glutathione transferase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.5.1.18 inhibitor" RELATED [ChEBI] +synonym: "EC 2.5.1.18 inhibitors" RELATED [ChEBI] +synonym: "glutathione S-alkyl transferase inhibitor" RELATED [ChEBI] +synonym: "glutathione S-alkyl transferase inhibitors" RELATED [ChEBI] +synonym: "glutathione S-alkyltransferase inhibitor" RELATED [ChEBI] +synonym: "glutathione S-alkyltransferase inhibitors" RELATED [ChEBI] +synonym: "glutathione S-aralkyltransferase inhibitor" RELATED [ChEBI] +synonym: "glutathione S-aralkyltransferase inhibitors" RELATED [ChEBI] +synonym: "glutathione S-aryltransferase inhibitor" RELATED [ChEBI] +synonym: "glutathione S-aryltransferase inhibitors" RELATED [ChEBI] +synonym: "glutathione S-transferase inhibitor" RELATED [ChEBI] +synonym: "glutathione S-transferase inhibitors" RELATED [ChEBI] +synonym: "glutathione transferase (EC 2.5.1.18) inhibitor" RELATED [ChEBI] +synonym: "glutathione transferase (EC 2.5.1.18) inhibitors" RELATED [ChEBI] +synonym: "glutathione transferase inhibitor" RELATED [ChEBI] +synonym: "glutathione transferase inhibitors" RELATED [ChEBI] +synonym: "RX:glutathione R-transferase inhibitor" RELATED [ChEBI] +synonym: "RX:glutathione R-transferase inhibitors" RELATED [ChEBI] +synonym: "S-(hydroxyalkyl)glutathione lyase inhibitor" RELATED [ChEBI] +synonym: "S-(hydroxyalkyl)glutathione lyase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Glutathione_S-transferase +is_a: CHEBI:76663 ! EC 2.5.1.* (non-methyl-alkyl or aryl transferase) inhibitor + +[Term] +id: CHEBI:76807 +name: EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor +namespace: chebi_ontology +def: "An EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor that interferes with the action of any non-peptide linear amide C-N hydrolase (EC 3.5.1.*)." [] +subset: 3_STAR +synonym: "EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.5.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 3.5.1.* inhibitors" RELATED [ChEBI] +synonym: "non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitor" RELATED [ChEBI] +synonym: "non-peptide linear amide C-N hydrolase (EC 3.5.1.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76764 ! EC 3.5.* (hydrolases acting on non-peptide C-N bonds) inhibitor + +[Term] +id: CHEBI:76815 +name: EC 2.7.7.* (nucleotidyltransferase) inhibitor +namespace: chebi_ontology +def: "An EC 2.7.* (P-containing group transferase) inhibitor that interferes with the action of any nucleotidyltransferase (EC 2.7.7.*)." [] +subset: 3_STAR +synonym: "EC 2.7.7.* (nucleotidyltransferase) inhibitors" RELATED [ChEBI] +synonym: "inhibitor of nucleotidyltransferases" RELATED [ChEBI] +synonym: "inhibitor of nucleotidyltransferases (EC 2.7.7.*)" RELATED [ChEBI] +synonym: "inhibitors of nucleotidyltransferases" RELATED [ChEBI] +synonym: "inhibitors of nucleotidyltransferases (EC 2.7.7.*)" RELATED [ChEBI] +synonym: "nucleotidyltransferase (EC 2.7.7.*) inhibitor" RELATED [ChEBI] +synonym: "nucleotidyltransferase (EC 2.7.7.*) inhibitors" RELATED [ChEBI] +synonym: "nucleotidyltransferase inhibitor" RELATED [ChEBI] +synonym: "nucleotidyltransferase inhibitors" RELATED [ChEBI] +is_a: CHEBI:76668 ! EC 2.7.* (P-containing group transferase) inhibitor + +[Term] +id: CHEBI:76824 +name: EC 6.4.1.* (carboxylase) inhibitor +namespace: chebi_ontology +def: "An EC 6.4.* (C-C bond-forming ligase) inhibitor that interferes with the action of a carboxylating enzyme (EC 6.4.1.*)." [] +subset: 3_STAR +synonym: "EC 6.4.1.* (C-C bond forming ligase) inhibitor" RELATED [ChEBI] +synonym: "EC 6.4.1.* (C-C bond forming ligase) inhibitors" RELATED [ChEBI] +synonym: "EC 6.4.1.* (C-C bond-forming ligase) inhibitors" RELATED [ChEBI] +synonym: "EC 6.4.1.* (carboxylase) inhibitors" RELATED [ChEBI] +synonym: "EC 6.4.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 6.4.1.* inhibitors" RELATED [ChEBI] +synonym: "inhibitor of ligases forming C-C bonds" RELATED [ChEBI] +synonym: "inhibitor of ligases forming C-C bonds (EC 6.4.1.*)" RELATED [ChEBI] +synonym: "inhibitors of ligases forming C-C bonds" RELATED [ChEBI] +synonym: "inhibitors of ligases forming C-C bonds (EC 6.4.1.*)" RELATED [ChEBI] +is_a: CHEBI:75604 ! EC 6.4.* (C-C bond-forming ligase) inhibitor + +[Term] +id: CHEBI:76830 +name: EC 5.99.1.* (miscellaneous isomerase) inhibitor +namespace: chebi_ontology +def: "An EC 5.99.* (other isomerases) inhibitor that interferes with the activity of any enzyme in the EC 5.99.1.* class." [] +subset: 3_STAR +synonym: "EC 5.99.1.* (miscellaneous isomerase) inhibitors" RELATED [ChEBI] +synonym: "EC 5.99.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 5.99.1.* inhibitors" RELATED [ChEBI] +is_a: CHEBI:76697 ! EC 5.99.* (other isomerases) inhibitor + +[Term] +id: CHEBI:76832 +name: EC 4.3.1.* (ammonia-lyase) inhibitor +namespace: chebi_ontology +def: "An EC 4.3.* (C-N lyase) inhibitor that interferes with the action of any ammonia-lyase (EC 4.3.1.*)." [] +subset: 3_STAR +synonym: "ammonia-lyase (EC 4.3.1.*) inhibitor" RELATED [ChEBI] +synonym: "ammonia-lyase (EC 4.3.1.*) inhibitors" RELATED [ChEBI] +synonym: "ammonia-lyase inhibitor" RELATED [ChEBI] +synonym: "ammonia-lyase inhibitors" RELATED [ChEBI] +synonym: "EC 4.3.1.* (ammonia-lyase) inhibitors" RELATED [ChEBI] +synonym: "EC 4.3.1.* (ammonia-lyases) inhibitor" RELATED [ChEBI] +synonym: "EC 4.3.1.* (ammonia-lyases) inhibitors" RELATED [ChEBI] +synonym: "EC 4.3.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 4.3.1.* inhibitors" RELATED [ChEBI] +is_a: CHEBI:76713 ! EC 4.3.* (C-N lyase) inhibitor + +[Term] +id: CHEBI:76834 +name: EC 2.5.* (non-methyl-alkyl or aryl transferase) inhibitor +namespace: chebi_ontology +def: "An EC 2.5.* (transferase) inhibitor that inhibits the action of any transferase that transfers an alkyl (other than methyl) or aryl group (EC 2.5.*)." [] +subset: 3_STAR +synonym: "EC 2.5.* (non-methyl-alkyl or aryl transferase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.5.* inhibitor" RELATED [ChEBI] +synonym: "EC 2.5.* inhibitors" RELATED [ChEBI] +synonym: "non-methyl-alkyl or aryl transferase (EC 2.5.*) inhibitor" RELATED [ChEBI] +synonym: "non-methyl-alkyl or aryl transferase (EC 2.5.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:71300 ! EC 2.* (transferase) inhibitor + +[Term] +id: CHEBI:76837 +name: EC 1.13.11.* (oxidoreductase acting on single donors and incorporating 2 O atoms) inhibitor +namespace: chebi_ontology +def: "An EC 1.13.* [oxidoreductase acting on single donors with incorporation of molecular oxygen (oxygenases)] inhibitor that inhibits the action of any oxidoreductase incorporating 2 atoms of oxygen (EC 1.13.11.*)." [] +subset: 3_STAR +synonym: "EC 1.13.11.* (oxidoreductase acting on single donors and incorporating 2 atoms of oxygen) inhibitor" RELATED [ChEBI] +synonym: "EC 1.13.11.* (oxidoreductase acting on single donors and incorporating 2 atoms of oxygen) inhibitors" RELATED [ChEBI] +synonym: "EC 1.13.11.* (oxidoreductase acting on single donors and incorporating 2 O atoms) inhibitors" RELATED [ChEBI] +synonym: "EC 1.13.11.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.13.11.* inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on single donors and incorporating 2 atoms of oxygen (EC 1.13.11.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on single donors and incorporating 2 atoms of oxygen (EC 1.13.11.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76740 ! EC 1.13.* [oxidoreductase acting on single donors with incorporation of molecular oxygen (oxygenases)] inhibitor + +[Term] +id: CHEBI:76840 +name: EC 1.14.99.* (miscellaneous oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor +namespace: chebi_ontology +def: "An EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor that interferes with the action of any enzyme in the EC 1.14.99.* (miscellaneous) category." [] +subset: 3_STAR +synonym: "EC 1.14.99.* (miscellaneous oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitors" RELATED [ChEBI] +synonym: "EC 1.14.99.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.14.99.* inhibitors" RELATED [ChEBI] +synonym: "miscellaneous oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.99.*) inhibitor" RELATED [ChEBI] +synonym: "miscellaneous oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen (EC 1.14.99.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76741 ! EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor + +[Term] +id: CHEBI:76841 +name: EC 1.14.13.* (oxidoreductase acting on paired donors, incorporating 1 atom of oxygen, with NADH or NADPH as one donor) inhibitor +namespace: chebi_ontology +def: "An EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor that interferes with the action of any such enzyme incorporating one atom of oxygen and using NADH or NADPH as one donor (EC 1.14.13.*)." [] +subset: 3_STAR +synonym: "EC 1.14.13.* (oxidoreductase acting on paired donors, incorporating 1 atom of oxygen, with NADH or NADPH as one donor) inhibitors" RELATED [ChEBI] +synonym: "EC 1.14.13.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.14.13.* inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on paired donors, incorporating 1 atom of oxygen, with NADH or NADPH as one donor (EC 1.14.13.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on paired donors, incorporating 1 atom of oxygen, with NADH or NADPH as one donor (EC 1.14.13.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76741 ! EC 1.14.* (oxidoreductase acting on paired donors, with incorporation or reduction of molecular oxygen) inhibitor + +[Term] +id: CHEBI:76848 +name: EC 1.17.4.* (oxidoreductase acting on CH or CH2 with a disulfide as acceptor) inhibitor +namespace: chebi_ontology +def: "An EC 1.17.* (oxidoreductase acting on CH or CH2) inhibitor that interferes with the activity of any such enzyme that uses a disulfide as acceptor (EC 1.17.4.*)." [] +subset: 3_STAR +synonym: "EC 1.17.4.* (oxidoreductase acting on CH or CH2 with a disulfide as acceptor) inhibitors" RELATED [ChEBI] +synonym: "EC 1.17.4.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.17.4.* inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on CH or CH2 with a disulfide as acceptor (EC 1.17.4.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on CH or CH2 with a disulfide as acceptor (EC 1.17.4.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76744 ! EC 1.17.* (oxidoreductase acting on CH or CH2) inhibitor + +[Term] +id: CHEBI:76857 +name: EC 1.3.1.* (oxidoreductase acting on donor CH-CH group, NAD(+) or NADP(+) as acceptor) inhibitor +namespace: chebi_ontology +def: "An EC 1.3.* (oxidoreductase acting on donor CH-CH group) inhibitor that interferes with the action of any such enzyme using NAD(+) or NADP(+) as acceptor (EC 1.3.1.*)." [] +subset: 3_STAR +synonym: "EC 1.3.1.* (oxidoreductase acting on CH-CH group of donor with NAD(+) or NADP(+) as acceptor) inhibitor" RELATED [ChEBI] +synonym: "EC 1.3.1.* (oxidoreductase acting on CH-CH group of donor with NAD(+) or NADP(+) as acceptor) inhibitors" RELATED [ChEBI] +synonym: "EC 1.3.1.* (oxidoreductase acting on CH-CH group of donor, NAD(+) or NADP(+) as acceptor) inhibitor" RELATED [ChEBI] +synonym: "EC 1.3.1.* (oxidoreductase acting on CH-CH group of donor, NAD(+) or NADP(+) as acceptor) inhibitors" RELATED [ChEBI] +synonym: "EC 1.3.1.* (oxidoreductase acting on donor CH-CH group, NAD(+) or NADP(+) as acceptor) inhibitors" RELATED [ChEBI] +synonym: "EC 1.3.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.3.1.* inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on CH-CH group of donor with NAD(+) or NADP(+) as acceptor (EC 1.3.1.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on CH-CH group of donor with NAD(+) or NADP(+) as acceptor (EC 1.3.1.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76729 ! EC 1.3.* (oxidoreductase acting on donor CH-CH group) inhibitor + +[Term] +id: CHEBI:76861 +name: EC 1.4.3.* (oxidoreductase acting on donor CH-NH2 group, oxygen as acceptor) inhibitor +namespace: chebi_ontology +def: "An EC 1.4.* (oxidoreductase acting on donor CH-NH2 group) inhibitor that interferes with the action of any such enzyme using oxygen as acceptor (EC 1.4.3.*)." [] +subset: 3_STAR +synonym: "EC 1.4.3.* (oxidoreductase acting on donor CH-NH2 group, oxygen as acceptor) inhibitors" RELATED [ChEBI] +synonym: "EC 1.4.3.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.4.3.* inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on donor CH-NH2 group, oxygen as acceptor (EC 1.4.3.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on donor CH-NH2 group, oxygen as acceptor (EC 1.4.3.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76730 ! EC 1.4.* (oxidoreductase acting on donor CH-NH2 group) inhibitor + +[Term] +id: CHEBI:76870 +name: EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitor +namespace: chebi_ontology +def: "An EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor that interferes with the action of any such enzyme using oxygen as acceptor (EC 1.9.3.*)." [] +subset: 3_STAR +synonym: "EC 1.9.3.* (oxidoreductase acting on donor heme group, oxygen as acceptor) inhibitors" RELATED [ChEBI] +synonym: "EC 1.9.3.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.9.3.* inhibitors" RELATED [ChEBI] +synonym: "oxidoreductase acting on donor heme group, oxygen as acceptor (EC 1.9.3.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductase acting on donor heme group, oxygen as acceptor (EC 1.9.3.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76736 ! EC 1.9.* (oxidoreductase acting on donor heme group) inhibitor + +[Term] +id: CHEBI:76871 +name: EC 2.1.1.* (methyltransferases) inhibitor +namespace: chebi_ontology +def: "An EC 2.1.* (C1-transferase) inhibitor that interferes with the action of any methyltransferase (EC 2.1.1.*)." [] +subset: 3_STAR +synonym: "EC 2.1.1.* (methyltransferase) inhibitor" RELATED [ChEBI] +synonym: "EC 2.1.1.* (methyltransferase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.1.1.* (methyltransferases) inhibitors" RELATED [ChEBI] +synonym: "EC 2.1.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 2.1.1.* inhibitors" RELATED [ChEBI] +synonym: "methyltransferase (EC 2.1.1.*) inhibitor" RELATED [ChEBI] +synonym: "methyltransferase (EC 2.1.1.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76655 ! EC 2.1.* (C1-transferase) inhibitor + +[Term] +id: CHEBI:76874 +name: EC 2.1.2.* (hydroxymethyl-, formyl- and related transferases) inhibitor +namespace: chebi_ontology +def: "An EC 2.1.* (C1-transferase) inhibitor that interferes with the action of any hydroxymethyl-, formyl- and related transferase (EC 2.1.2.*)." [] +subset: 3_STAR +synonym: "EC 2.1.2.* (hydroxymethyl-, formyl- and related transferases) inhibitors" RELATED [ChEBI] +synonym: "EC 2.1.2.* inhibitor" RELATED [ChEBI] +synonym: "EC 2.1.2.* inhibitors" RELATED [ChEBI] +synonym: "hydroxymethyl-, formyl- and related transferases (EC 2.1.2.*) inhibitor" RELATED [ChEBI] +synonym: "hydroxymethyl-, formyl- and related transferases (EC 2.1.2.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76655 ! EC 2.1.* (C1-transferase) inhibitor + +[Term] +id: CHEBI:76881 +name: EC 2.7.1.* (phosphotransferases with an alcohol group as acceptor) inhibitor +namespace: chebi_ontology +def: "An EC 2.7.* (P-containing group transferase) inhibitor that interferes with the action of any phosphotransferase with an alcohol group as acceptor (EC 2.7.1.*)." [] +subset: 3_STAR +synonym: "EC 2.7.1.* (phosphotransferases with an alcohol group as acceptor) inhibitors" RELATED [ChEBI] +synonym: "EC 2.7.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 2.7.1.* inhibitors" RELATED [ChEBI] +synonym: "phosphotransferases with an alcohol group as acceptor (EC 2.7.1.*) inhibitor" RELATED [ChEBI] +synonym: "phosphotransferases with an alcohol group as acceptor (EC 2.7.1.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76668 ! EC 2.7.* (P-containing group transferase) inhibitor + +[Term] +id: CHEBI:76891 +name: EC 3.4.11.14 (cytosol alanyl aminopeptidase) inhibitor +namespace: chebi_ontology +def: "An EC 3.4.11.* (aminopeptidase) inhibitor that interferes with the action of cytosol alanyl aminopeptidase (EC 3.4.11.14)." [] +subset: 3_STAR +synonym: "alanine aminopeptidase inhibitor" RELATED [ChEBI] +synonym: "alanine aminopeptidase inhibitors" RELATED [ChEBI] +synonym: "aminopolypeptidase inhibitor" RELATED [ChEBI] +synonym: "aminopolypeptidase inhibitors" RELATED [ChEBI] +synonym: "arylamidase inhibitor" RELATED [ChEBI] +synonym: "arylamidase inhibitors" RELATED [ChEBI] +synonym: "cytosol alanyl aminopeptidase (EC 3.4.11.14) inhibitor" RELATED [ChEBI] +synonym: "cytosol alanyl aminopeptidase (EC 3.4.11.14) inhibitors" RELATED [ChEBI] +synonym: "cytosol alanyl aminopeptidase inhibitor" RELATED [ChEBI] +synonym: "cytosol alanyl aminopeptidase inhibitors" RELATED [ChEBI] +synonym: "cytosol aminopeptidase III inhibitor" RELATED [ChEBI] +synonym: "cytosol aminopeptidase III inhibitors" RELATED [ChEBI] +synonym: "EC 3.4.11.14 (cytosol alanyl aminopeptidase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.4.11.14 inhibitor" RELATED [ChEBI] +synonym: "EC 3.4.11.14 inhibitors" RELATED [ChEBI] +synonym: "human liver aminopeptidase inhibitor" RELATED [ChEBI] +synonym: "human liver aminopeptidase inhibitors" RELATED [ChEBI] +synonym: "puromycin-sensitive aminopeptidase inhibitor" RELATED [ChEBI] +synonym: "puromycin-sensitive aminopeptidase inhibitors" RELATED [ChEBI] +synonym: "soluble alanyl aminopeptidase inhibitor" RELATED [ChEBI] +synonym: "soluble alanyl aminopeptidase inhibitors" RELATED [ChEBI] +synonym: "thiol-activated aminopeptidase inhibitor" RELATED [ChEBI] +synonym: "thiol-activated aminopeptidase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Cytosol_alanyl_aminopeptidase +is_a: CHEBI:76787 ! EC 3.4.11.* (aminopeptidase) inhibitor + +[Term] +id: CHEBI:76893 +name: EC 3.4.14.2 (dipeptidyl-peptidase II) inhibitor +namespace: chebi_ontology +def: "An EC 3.4.14.* (dipeptidyl- and tripeptidyl-peptidases) inhibitor that interferes with the action of dipeptidyl-peptidase II (EC 3.4.14.2)." [] +subset: 3_STAR +synonym: "carboxytripeptidase inhibitor" RELATED [ChEBI] +synonym: "carboxytripeptidase inhibitors" RELATED [ChEBI] +synonym: "DAP II inhibitor" RELATED [ChEBI] +synonym: "DAP II inhibitors" RELATED [ChEBI] +synonym: "dipeptidyl aminopeptidase II inhibitor" RELATED [ChEBI] +synonym: "dipeptidyl aminopeptidase II inhibitors" RELATED [ChEBI] +synonym: "dipeptidyl arylamidase II inhibitor" RELATED [ChEBI] +synonym: "dipeptidyl arylamidase II inhibitors" RELATED [ChEBI] +synonym: "dipeptidyl peptidase II inhibitor" RELATED [ChEBI] +synonym: "dipeptidyl peptidase II inhibitors" RELATED [ChEBI] +synonym: "dipeptidyl(amino)peptidase II inhibitor" RELATED [ChEBI] +synonym: "dipeptidyl(amino)peptidase II inhibitors" RELATED [ChEBI] +synonym: "dipeptidyl-peptidase II (EC 3.4.14.2) inhibitor" RELATED [ChEBI] +synonym: "dipeptidyl-peptidase II (EC 3.4.14.2) inhibitors" RELATED [ChEBI] +synonym: "dipeptidyl-peptidase II inhibitor" RELATED [ChEBI] +synonym: "dipeptidyl-peptidase II inhibitors" RELATED [ChEBI] +synonym: "dipeptidylarylamidase inhibitor" RELATED [ChEBI] +synonym: "dipeptidylarylamidase inhibitors" RELATED [ChEBI] +synonym: "EC 3.4.14.2 (dipeptidyl-peptidase II) inhibitors" RELATED [ChEBI] +synonym: "EC 3.4.14.2 inhibitor" RELATED [ChEBI] +synonym: "EC 3.4.14.2 inhibitors" RELATED [ChEBI] +is_a: CHEBI:76788 ! EC 3.4.14.* (dipeptidyl- and tripeptidyl-peptidases) inhibitor + +[Term] +id: CHEBI:76906 +name: EC 4.1.1.* (carboxy-lyase) inhibitor +namespace: chebi_ontology +def: "An EC 4.1.* (C-C lyase) inhibitor that interferes with the action of any carboxy-lyase (EC 4.1.1.*)." [] +subset: 3_STAR +synonym: "carboxy-lyase (EC 4.1.1.*) inhibitor" RELATED [ChEBI] +synonym: "carboxy-lyase (EC 4.1.1.*) inhibitors" RELATED [ChEBI] +synonym: "carboxy-lyases (EC 4.1.1.*) inhibitor" RELATED [ChEBI] +synonym: "carboxy-lyases (EC 4.1.1.*) inhibitors" RELATED [ChEBI] +synonym: "EC 4.1.1.* (carboxy-lyase) inhibitors" RELATED [ChEBI] +synonym: "EC 4.1.1.* (carboxy-lyases) inhibitor" RELATED [ChEBI] +synonym: "EC 4.1.1.* (carboxy-lyases) inhibitors" RELATED [ChEBI] +synonym: "EC 4.1.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 4.1.1.* inhibitors" RELATED [ChEBI] +is_a: CHEBI:76711 ! EC 4.1.* (C-C lyase) inhibitor + +[Term] +id: CHEBI:76907 +name: EC 4.2.1.* (hydro-lyases) inhibitor +namespace: chebi_ontology +def: "An EC 4.2.* (C-O lyase) inhibitor that interferes with the action of any hydro-lyase (EC 4.2.1.*)." [] +subset: 3_STAR +synonym: "EC 4.2.1.* (hydro-lyase) inhibitor" RELATED [ChEBI] +synonym: "EC 4.2.1.* (hydro-lyase) inhibitors" RELATED [ChEBI] +synonym: "EC 4.2.1.* (hydro-lyases) inhibitors" RELATED [ChEBI] +synonym: "EC 4.2.1.* inhibitor" RELATED [ChEBI] +synonym: "EC 4.2.1.* inhibitors" RELATED [ChEBI] +synonym: "hydro-lyase (EC 4.2.1.*) inhibitor" RELATED [ChEBI] +synonym: "hydro-lyase (EC 4.2.1.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76712 ! EC 4.2.* (C-O lyase) inhibitor + +[Term] +id: CHEBI:76924 +name: plant metabolite +namespace: chebi_ontology +alt_id: CHEBI:75766 +alt_id: CHEBI:76925 +def: "Any eukaryotic metabolite produced during a metabolic reaction in plants, the kingdom that include flowering plants, conifers and other gymnosperms." [] +subset: 3_STAR +synonym: "plant metabolites" RELATED [ChEBI] +synonym: "plant secondary metabolites" RELATED [ChEBI] +is_a: CHEBI:75763 ! eukaryotic metabolite + +[Term] +id: CHEBI:76932 +name: pathway inhibitor +namespace: chebi_ontology +def: "An enzyme inhibitor that interferes with one or more steps in a metabolic pathway." [] +subset: 3_STAR +synonym: "metabolic pathway inhibitor" RELATED [ChEBI] +synonym: "metabolic pathway inhibitors" RELATED [ChEBI] +synonym: "pathway inhibitors" RELATED [ChEBI] +is_a: CHEBI:23924 ! enzyme inhibitor + +[Term] +id: CHEBI:76946 +name: fungal metabolite +namespace: chebi_ontology +alt_id: CHEBI:75765 +alt_id: CHEBI:76947 +def: "Any eukaryotic metabolite produced during a metabolic reaction in fungi, the kingdom that includes microorganisms such as the yeasts and moulds." [] +subset: 3_STAR +synonym: "fungal metabolites" RELATED [ChEBI] +is_a: CHEBI:75763 ! eukaryotic metabolite + +[Term] +id: CHEBI:76956 +name: Aspergillus metabolite +namespace: chebi_ontology +alt_id: CHEBI:75864 +alt_id: CHEBI:76958 +def: "Any fungal metabolite produced during a metabolic reaction in the mould, Aspergillus." [] +subset: 3_STAR +synonym: "Aspergillus metabolites" RELATED [ChEBI] +is_a: CHEBI:76946 ! fungal metabolite + +[Term] +id: CHEBI:76964 +name: Penicillium metabolite +namespace: chebi_ontology +alt_id: CHEBI:76205 +alt_id: CHEBI:76963 +def: "Any fungal metabolite produced during a metabolic reaction in Penicillium." [] +subset: 3_STAR +synonym: "Penicillium metabolites" RELATED [ChEBI] +is_a: CHEBI:76946 ! fungal metabolite + +[Term] +id: CHEBI:76967 +name: human xenobiotic metabolite +namespace: chebi_ontology +def: "Any human metabolite produced by metabolism of a xenobiotic compound in humans." [] +subset: 3_STAR +synonym: "human xenobiotic metabolites" RELATED [ChEBI] +is_a: CHEBI:76206 ! xenobiotic metabolite +is_a: CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:76969 +name: bacterial metabolite +namespace: chebi_ontology +alt_id: CHEBI:75760 +alt_id: CHEBI:76970 +def: "Any prokaryotic metabolite produced during a metabolic reaction in bacteria." [] +subset: 3_STAR +is_a: CHEBI:75787 ! prokaryotic metabolite + +[Term] +id: CHEBI:76971 +name: Escherichia coli metabolite +namespace: chebi_ontology +def: "Any bacterial metabolite produced during a metabolic reaction in Escherichia coli." [] +subset: 3_STAR +synonym: "E.coli metabolite" RELATED [ChEBI] +synonym: "E.coli metabolites" RELATED [ChEBI] +synonym: "Escherichia coli metabolites" RELATED [ChEBI] +is_a: CHEBI:76969 ! bacterial metabolite + +[Term] +id: CHEBI:76976 +name: bacterial xenobiotic metabolite +namespace: chebi_ontology +def: "Any bacterial metabolite produced by metabolism of a xenobiotic compound in bacteria." [] +subset: 3_STAR +synonym: "bacterial xenobiotic metabolites" RELATED [ChEBI] +is_a: CHEBI:76206 ! xenobiotic metabolite +is_a: CHEBI:76969 ! bacterial metabolite + +[Term] +id: CHEBI:76989 +name: phytoestrogen +namespace: chebi_ontology +def: "Any compound produced by a plant that happens to have estrogenic activity." [] +subset: 3_STAR +synonym: "phytoestrogens" RELATED [ChEBI] +xref: Wikipedia:Phytoestrogen +is_a: CHEBI:50114 ! estrogen + +[Term] +id: CHEBI:77019 +name: EC 1.10.99.* (oxidoreductases acting on diphenols and related substances as donors, other acceptors) inhibitor +namespace: chebi_ontology +def: "An EC 1.10.* (oxidoreductase acting on diphenols and related substances as donors) inhibitor that interferes with the action of any such enzyme in the EC 1.10.99.* category." [] +subset: 3_STAR +synonym: "EC 1.10.99.* (oxidoreductases acting on diphenols and related substances as donors, other acceptors) inhibitors" RELATED [ChEBI] +synonym: "EC 1.10.99.* inhibitor" RELATED [ChEBI] +synonym: "EC 1.10.99.* inhibitors" RELATED [ChEBI] +synonym: "oxidoreductases acting on diphenols and related substances as donors, other acceptors (EC 1.10.99.*) inhibitor" RELATED [ChEBI] +synonym: "oxidoreductases acting on diphenols and related substances as donors, other acceptors (EC 1.10.99.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76737 ! EC 1.10.* (oxidoreductase acting on diphenols and related substances as donors) inhibitor + +[Term] +id: CHEBI:77020 +name: EC 1.10.99.2 [ribosyldihydronicotinamide dehydrogenase (quinone)] inhibitor +namespace: chebi_ontology +def: "An EC 1.10.99.* (oxidoreductases acting on diphenols and related substances as donors, other acceptors) inhibitor that interferes with the action of ribosyldihydronicotinamide dehydrogenase (quinone), EC 1.10.99.2." [] +subset: 3_STAR +synonym: "1-(beta-D-ribofuranosyl)-1,4-dihydronicotinamide:quinone oxidoreductase inhibitor" RELATED [ChEBI] +synonym: "1-(beta-D-ribofuranosyl)-1,4-dihydronicotinamide:quinone oxidoreductase inhibitors" RELATED [ChEBI] +synonym: "EC 1.10.99.2 (ribosyldihydronicotinamide dehydrogenase (quinone)) inhibitor" RELATED [ChEBI] +synonym: "EC 1.10.99.2 (ribosyldihydronicotinamide dehydrogenase (quinone)) inhibitors" RELATED [ChEBI] +synonym: "EC 1.10.99.2 [ribosyldihydronicotinamide dehydrogenase (quinone)] inhibitors" RELATED [ChEBI] +synonym: "EC 1.10.99.2 inhibitor" RELATED [ChEBI] +synonym: "EC 1.10.99.2 inhibitors" RELATED [ChEBI] +synonym: "N-ribosyldihydronicotinamide dehydrogenase (quinone) inhibitor" RELATED [ChEBI] +synonym: "N-ribosyldihydronicotinamide dehydrogenase (quinone) inhibitors" RELATED [ChEBI] +synonym: "NAD(P)H:quinone oxidoreductase-2 inhibitor" RELATED [ChEBI] +synonym: "NAD(P)H:quinone oxidoreductase-2 inhibitors" RELATED [ChEBI] +synonym: "NAD(P)H:quinone oxidoreductase2 inhibitor" RELATED [ChEBI] +synonym: "NAD(P)H:quinone oxidoreductase2 inhibitors" RELATED [ChEBI] +synonym: "NQO2 inhibitor" RELATED [ChEBI] +synonym: "NQO2 inhibitors" RELATED [ChEBI] +synonym: "NRH:quinone oxidoreductase 2 inhibitor" RELATED [ChEBI] +synonym: "NRH:quinone oxidoreductase 2 inhibitors" RELATED [ChEBI] +synonym: "QR2 inhibitor" RELATED [ChEBI] +synonym: "QR2 inhibitors" RELATED [ChEBI] +synonym: "quinone reductase 2 inhibitor" RELATED [ChEBI] +synonym: "quinone reductase 2 inhibitors" RELATED [ChEBI] +synonym: "ribosyldihydronicotinamide dehydrogenase (quinone) (EC 1.10.99.2) inhibitor" RELATED [ChEBI] +synonym: "ribosyldihydronicotinamide dehydrogenase (quinone) (EC 1.10.99.2) inhibitors" RELATED [ChEBI] +xref: Wikipedia:Ribosyldihydronicotinamide_dehydrogenase_(quinone) +is_a: CHEBI:77019 ! EC 1.10.99.* (oxidoreductases acting on diphenols and related substances as donors, other acceptors) inhibitor + +[Term] +id: CHEBI:77115 +name: EC 2.1.1.122 [(S)-tetrahydroprotoberberine N-methyltransferase] inhibitor +namespace: chebi_ontology +def: "An EC 2.1.1.* (methyltransferases) inhibitor that interferes with the action of (S)-tetrahydroprotoberberine N-methyltransferase (EC 2.1.1.122)." [] +subset: 3_STAR +synonym: "(S)-tetrahydroprotoberberine N-methyltransferase (EC 2.1.1.122) inhibitor" RELATED [ChEBI] +synonym: "(S)-tetrahydroprotoberberine N-methyltransferase (EC 2.1.1.122) inhibitors" RELATED [ChEBI] +synonym: "(S)-tetrahydroprotoberberine N-methyltransferase inhibitor" RELATED [ChEBI] +synonym: "(S)-tetrahydroprotoberberine N-methyltransferase inhibitors" RELATED [ChEBI] +synonym: "EC 2.1.1.122 ((S)-tetrahydroprotoberberine N-methyltransferase) inhibitor" RELATED [ChEBI] +synonym: "EC 2.1.1.122 ((S)-tetrahydroprotoberberine N-methyltransferase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.1.1.122 [(S)-tetrahydroprotoberberine N-methyltransferase] inhibitors" RELATED [ChEBI] +synonym: "EC 2.1.1.122 inhibitor" RELATED [ChEBI] +synonym: "EC 2.1.1.122 inhibitors" RELATED [ChEBI] +synonym: "S-adenosyl-L-methionine:(S)-7,8,13,14-tetrahydroprotoberberine cis-N-methyltransferase inhibitor" RELATED [ChEBI] +synonym: "S-adenosyl-L-methionine:(S)-7,8,13,14-tetrahydroprotoberberine cis-N-methyltransferase inhibitors" RELATED [ChEBI] +synonym: "tetrahydroprotoberberine cis-N-methyltransferase inhibitor" RELATED [ChEBI] +synonym: "tetrahydroprotoberberine cis-N-methyltransferase inhibitors" RELATED [ChEBI] +xref: Wikipedia:(S)-tetrahydroprotoberberine_N-methyltransferase +is_a: CHEBI:76871 ! EC 2.1.1.* (methyltransferases) inhibitor + +[Term] +id: CHEBI:77182 +name: food colouring +namespace: chebi_ontology +def: "A food additive that imparts colour to food. In European countries, E-numbers for permitted food colours are from E 100 to E 199, divided into yellows (E 100-109), oranges (E 110-119), reds (E 120-129), blues and violets (E 130-139), greens (E 140-149), browns and blacks (E 150-159), and others (E 160-199)." [] +subset: 3_STAR +synonym: "food coloring" RELATED [ChEBI] +synonym: "food colorings" RELATED [ChEBI] +synonym: "food colourings" RELATED [ChEBI] +xref: Wikipedia:Food_coloring +is_a: CHEBI:64047 ! food additive + +[Term] +id: CHEBI:77315 +name: spectinomycin(2+) +namespace: chebi_ontology +def: "An organic cation obtained by protonation of the secondary amino groups of spectinomycin." [] +subset: 3_STAR +synonym: "(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-4a,7,9-trihydroxy-N,N',2-trimethyl-4-oxodecahydro-2H-pyrano[2,3-b][1,4]benzodioxine-6,8-diaminium" EXACT IUPAC_NAME [IUPAC] +synonym: "+2" RELATED CHARGE [ChEBI] +synonym: "334.174" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "334.36430" RELATED MASS [ChEBI] +synonym: "C14H26N2O7" RELATED FORMULA [ChEBI] +synonym: "C[NH2+][C@@H]1[C@H](O)[C@H]([NH2+]C)[C@H]2O[C@]3(O)[C@@H](O[C@H](C)CC3=O)O[C@@H]2[C@H]1O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C14H24N2O7/c1-5-4-6(17)14(20)13(21-5)22-12-10(19)7(15-2)9(18)8(16-3)11(12)23-14/h5,7-13,15-16,18-20H,4H2,1-3H3/p+2/t5-,7-,8+,9+,10+,11-,12-,13+,14+/m1/s1" RELATED InChI [ChEBI] +synonym: "spectinomycin dication" RELATED [ChEBI] +synonym: "UNFWWIHTNXNPBV-WXKVUWSESA-P" RELATED InChIKey [ChEBI] +is_a: CHEBI:25697 ! organic cation +is_a: CHEBI:35274 ! ammonium ion +relationship: is_conjugate_acid_of CHEBI:9215 ! spectinomycin + +[Term] +id: CHEBI:77318 +name: pregnane X receptor agonist +namespace: chebi_ontology +def: "An agonist that selectively binds to and activates a pregnane X receptor." [] +subset: 3_STAR +synonym: "pregnane X receptor agonists" RELATED [ChEBI] +synonym: "PXR agonist" RELATED [ChEBI] +synonym: "PXR agonists" RELATED [ChEBI] +xref: Wikipedia:Pregnane_X_receptor +is_a: CHEBI:48705 ! agonist + +[Term] +id: CHEBI:77450 +name: dicarboxylic acid monoamide(1-) +namespace: chebi_ontology +def: "A monocarboxylic acid anion obtained by deprotonation of the carboxy group of any dicarboxylic acid monoamide; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "88.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "a monoamide of a dicarboxylate" RELATED [UniProt] +synonym: "C2H2NO3R" RELATED FORMULA [ChEBI] +synonym: "NC(=O)[*]C([O-])=O" RELATED SMILES [ChEBI] +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: is_conjugate_base_of CHEBI:35735 ! dicarboxylic acid monoamide + +[Term] +id: CHEBI:77521 +name: thermal degradation product +namespace: chebi_ontology +def: "Any product obtained as a result of thermally induced non-enzymatic degradation." [] +subset: 3_STAR +synonym: "thermal artefact" RELATED [ChEBI] +synonym: "thermal artefacts" RELATED [ChEBI] +synonym: "thermal degradation products" RELATED [ChEBI] +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:77523 +name: Maillard reaction product +namespace: chebi_ontology +def: "Any thermal degradation product obtained as a result of a chemical reaction between an amino acid and a reducing sugar (Maillard reaction, a non-enzymatic browning procedure that usually imparts flavour to starch-based food products)." [] +subset: 3_STAR +synonym: "Maillard product" RELATED [ChEBI] +synonym: "Maillard products" RELATED [ChEBI] +synonym: "maillard reaction products" RELATED [ChEBI] +xref: PMID:23588491 "Europe PMC" +xref: PMID:23612540 "Europe PMC" +xref: PMID:24246231 "Europe PMC" +xref: Wikipedia:Maillard_reaction +is_a: CHEBI:77521 ! thermal degradation product + +[Term] +id: CHEBI:77703 +name: EC 4.3.1.3 (histidine ammonia-lyase) inhibitor +namespace: chebi_ontology +def: "An EC 4.3.1.* (ammonia-lyase) inhibitor that interferes with the action of histidine ammonia-lyase (EC 4.3.1.3)." [] +subset: 3_STAR +synonym: "EC 4.3.1.3 (histidine ammonia-lyase) inhibitors" RELATED [ChEBI] +synonym: "EC 4.3.1.3 inhibitor" RELATED [ChEBI] +synonym: "EC 4.3.1.3 inhibitors" RELATED [ChEBI] +synonym: "histidase inhibitor" RELATED [ChEBI] +synonym: "histidase inhibitors" RELATED [ChEBI] +synonym: "histidinase inhibitor" RELATED [ChEBI] +synonym: "histidinase inhibitors" RELATED [ChEBI] +synonym: "histidine alpha-deaminase inhibitor" RELATED [ChEBI] +synonym: "histidine alpha-deaminase inhibitors" RELATED [ChEBI] +synonym: "histidine ammonia-lyase (EC 4.3.1.3) inhibitor" RELATED [ChEBI] +synonym: "histidine ammonia-lyase (EC 4.3.1.3) inhibitors" RELATED [ChEBI] +synonym: "histidine ammonia-lyase inhibitor" RELATED [ChEBI] +synonym: "histidine ammonia-lyase inhibitors" RELATED [ChEBI] +synonym: "L-histidine ammonia-lyase (urocanate-forming) inhibitor" RELATED [ChEBI] +synonym: "L-histidine ammonia-lyase (urocanate-forming) inhibitors" RELATED [ChEBI] +synonym: "L-histidine ammonia-lyase inhibitor" RELATED [ChEBI] +synonym: "L-histidine ammonia-lyase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Histidine_ammonia-lyase +is_a: CHEBI:76832 ! EC 4.3.1.* (ammonia-lyase) inhibitor + +[Term] +id: CHEBI:77746 +name: human metabolite +namespace: chebi_ontology +alt_id: CHEBI:75770 +alt_id: CHEBI:77123 +def: "Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens)." [] +subset: 3_STAR +synonym: "H. sapiens metabolite" RELATED [ChEBI] +synonym: "H. sapiens metabolites" RELATED [ChEBI] +synonym: "Homo sapiens metabolite" RELATED [ChEBI] +synonym: "Homo sapiens metabolites" RELATED [ChEBI] +is_a: CHEBI:75768 ! mammalian metabolite + +[Term] +id: CHEBI:77881 +name: EC 4.3.1.15 (diaminopropionate ammonia-lyase) inhibitor +namespace: chebi_ontology +def: "An EC 4.3.1.* (ammonia-lyase) inhibitor that interferes with the action of diaminopropionate ammonia-lyase (EC 4.3.1.15)." [] +subset: 3_STAR +synonym: "2,3-diaminopropanoate ammonia-lyase (adding H2O; pyruvate-forming) inhibitor" RELATED [ChEBI] +synonym: "2,3-diaminopropanoate ammonia-lyase (adding H2O; pyruvate-forming) inhibitors" RELATED [ChEBI] +synonym: "2,3-diaminopropanoate ammonia-lyase (adding water; pyruvate-forming) inhibitor" RELATED [ChEBI] +synonym: "2,3-diaminopropanoate ammonia-lyase (adding water; pyruvate-forming) inhibitors" RELATED [ChEBI] +synonym: "2,3-diaminopropanoate ammonia-lyase inhibitor" RELATED [ChEBI] +synonym: "2,3-diaminopropanoate ammonia-lyase inhibitors" RELATED [ChEBI] +synonym: "2,3-diaminopropionate ammonia-lyase inhibitor" RELATED [ChEBI] +synonym: "2,3-diaminopropionate ammonia-lyase inhibitors" RELATED [ChEBI] +synonym: "alpha,beta-diaminopropionate ammonia-lyase inhibitor" RELATED [ChEBI] +synonym: "alpha,beta-diaminopropionate ammonia-lyase inhibitors" RELATED [ChEBI] +synonym: "diaminopropionatase inhibitor" RELATED [ChEBI] +synonym: "diaminopropionatase inhibitors" RELATED [ChEBI] +synonym: "diaminopropionate ammonia-lyase (EC 4.3.1.15) inhibitor" RELATED [ChEBI] +synonym: "diaminopropionate ammonia-lyase (EC 4.3.1.15) inhibitors" RELATED [ChEBI] +synonym: "diaminopropionate ammonia-lyase inhibitor" RELATED [ChEBI] +synonym: "diaminopropionate ammonia-lyase inhibitors" RELATED [ChEBI] +synonym: "EC 4.3.1.15 (diaminopropionate ammonia-lyase) inhibitors" RELATED [ChEBI] +synonym: "EC 4.3.1.15 inhibitor" RELATED [ChEBI] +synonym: "EC 4.3.1.15 inhibitors" RELATED [ChEBI] +xref: Wikipedia:Diaminopropionate_ammonia-lyase +is_a: CHEBI:76832 ! EC 4.3.1.* (ammonia-lyase) inhibitor + +[Term] +id: CHEBI:77922 +name: isopentenol +namespace: chebi_ontology +def: "An enol that is 3-methylbut-1-ene in which one of the terminal hydrogens is replaced by a hydroxy group." [] +subset: 3_STAR +synonym: "(1E)-3-methylbut-1-en-1-ol" EXACT IUPAC_NAME [IUPAC] +synonym: "(E)-3-methylbut-1-en-1-ol" RELATED [SUBMITTER] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "86.073" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "86.13230" RELATED MASS [ChEBI] +synonym: "C5H10O" RELATED FORMULA [ChEBI] +synonym: "CC(C)\\C=C\\O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C5H10O/c1-5(2)3-4-6/h3-6H,1-2H3/b4-3+" RELATED InChI [ChEBI] +synonym: "QVDTXNVYSHVCGW-ONEGZZNKSA-N" RELATED InChIKey [ChEBI] +xref: colombos:ISOPENTENOL +xref: Reaxys:2424541 "Reaxys" +is_a: CHEBI:33823 ! enol +relationship: has_parent_hydride CHEBI:30362 ! isopentane + +[Term] +id: CHEBI:77932 +name: tetracycline zwitterion +namespace: chebi_ontology +def: "A zwitterion obtained by transfer of a proton from the 2-hydroxy group to the 1-amino group of tetracycline. It is the major microspecies at pH 7.3 (according to Marvin v 6.2.0.)." [] +subset: 3_STAR +synonym: "(1S,4aS,11S,11aS,12aS)-3-carbamoyl-1-(dimethylazaniumyl)-4a,5,7,11-tetrahydroxy-11-methyl-4,6-dioxo-1,4,4a,6,11,11a,12,12a-octahydrotetracen-2-olate" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "444.153" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "444.43460" RELATED MASS [ChEBI] +synonym: "C22H24N2O8" RELATED FORMULA [ChEBI] +synonym: "C[NH+](C)[C@H]1[C@@H]2C[C@H]3C(=C(O)[C@]2(O)C(=O)C(C(N)=O)=C1[O-])C(=O)c1c(O)cccc1[C@@]3(C)O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C22H24N2O8/c1-21(31)8-5-4-6-11(25)12(8)16(26)13-9(21)7-10-15(24(2)3)17(27)14(20(23)30)19(29)22(10,32)18(13)28/h4-6,9-10,15,25,27-28,31-32H,7H2,1-3H3,(H2,23,30)/t9-,10-,15-,21+,22-/m0/s1" RELATED InChI [ChEBI] +synonym: "OFVLGDICTFRJMM-WESIUVDSSA-N" RELATED InChIKey [ChEBI] +synonym: "tetracycline" RELATED [UniProt] +is_a: CHEBI:27369 ! zwitterion +relationship: has_role CHEBI:35820 ! antiprotozoal drug +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: has_role CHEBI:48001 ! protein synthesis inhibitor +relationship: is_conjugate_acid_of CHEBI:71392 ! tetracycline(1-) +relationship: is_conjugate_base_of CHEBI:27902 ! tetracycline + +[Term] +id: CHEBI:77941 +name: EC 3.5.1.4 (amidase) inhibitor +namespace: chebi_ontology +def: "An EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor that interferes with the action of amidase (EC 3.5.1.4)." [] +subset: 3_STAR +synonym: "acylamidase inhibitor" RELATED [ChEBI] +synonym: "acylamidase inhibitors" RELATED [ChEBI] +synonym: "acylamide amidohydrolase inhibitor" RELATED [ChEBI] +synonym: "acylamide amidohydrolase inhibitors" RELATED [ChEBI] +synonym: "amidase (EC 3.5.1.4) inhibitor" RELATED [ChEBI] +synonym: "amidase (EC 3.5.1.4) inhibitors" RELATED [ChEBI] +synonym: "amidase inhibitor" RELATED [ChEBI] +synonym: "amidase inhibitors" RELATED [ChEBI] +synonym: "amidohydrolase inhibitor" RELATED [ChEBI] +synonym: "amidohydrolase inhibitors" RELATED [ChEBI] +synonym: "deaminase inhibitor" RELATED [ChEBI] +synonym: "deaminase inhibitors" RELATED [ChEBI] +synonym: "EC 3.5.1.4 (amidase) inhibitors" RELATED [ChEBI] +synonym: "EC 3.5.1.4 inhibitor" RELATED [ChEBI] +synonym: "EC 3.5.1.4 inhibitors" RELATED [ChEBI] +synonym: "fatty acylamidase inhibitor" RELATED [ChEBI] +synonym: "fatty acylamidase inhibitors" RELATED [ChEBI] +synonym: "N-acetylaminohydrolase inhibitor" RELATED [ChEBI] +synonym: "N-acetylaminohydrolase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Amidase +is_a: CHEBI:76807 ! EC 3.5.1.* (non-peptide linear amide C-N hydrolase) inhibitor + +[Term] +id: CHEBI:77962 +name: food antioxidant +namespace: chebi_ontology +def: "An antioxidant that used as a food additives to help guard against food deterioration." [] +subset: 3_STAR +synonym: "food antioxidants" RELATED [ChEBI] +is_a: CHEBI:22586 ! antioxidant +is_a: CHEBI:65255 ! food preservative + +[Term] +id: CHEBI:77974 +name: food packaging gas +namespace: chebi_ontology +def: "A food additive that is a (generally inert) gas which is used to envelop foodstuffs during packing and so protect them from unwanted chemical reactions such as food spoilage or oxidation during subsequent transport and storage. The term includes propellant gases, used to expel foods from a container." [] +subset: 3_STAR +synonym: "food packaging gases" RELATED [ChEBI] +xref: Wikipedia:Packaging_gas +is_a: CHEBI:64047 ! food additive + +[Term] +id: CHEBI:78017 +name: food propellant +namespace: chebi_ontology +def: "A propellant that is used to expel foods from an aerosol container." [] +subset: 3_STAR +synonym: "food propellants" RELATED [ChEBI] +is_a: CHEBI:64047 ! food additive +is_a: CHEBI:76414 ! propellant + +[Term] +id: CHEBI:78113 +name: fatty acid anion 3:0 +namespace: chebi_ontology +def: "Any saturated fatty acid anion containing 3 carbons. Formed by deprotonation of the carboxylic acid moiety. Major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "73.029" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "73.07060" RELATED MASS [ChEBI] +synonym: "[O-]C([*])=O" RELATED SMILES [ChEBI] +synonym: "C3H5O2" RELATED FORMULA [ChEBI] +synonym: "fatty acid 3:0" RELATED [UniProt] +is_a: CHEBI:58951 ! short-chain fatty acid anion +is_a: CHEBI:58953 ! saturated fatty acid anion + +[Term] +id: CHEBI:78115 +name: fatty acid anion 4:0 +namespace: chebi_ontology +def: "Any saturated fatty acid anion containing 4 carbons. Formed by deprotonation of the carboxylic acid moiety. Major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "87.045" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "87.09718" RELATED MASS [ChEBI] +synonym: "[O-]C([*])=O" RELATED SMILES [ChEBI] +synonym: "C4H7O2" RELATED FORMULA [ChEBI] +synonym: "fatty acid 4:0" RELATED [UniProt] +is_a: CHEBI:58951 ! short-chain fatty acid anion +is_a: CHEBI:58953 ! saturated fatty acid anion + +[Term] +id: CHEBI:78116 +name: fatty acid anion 6:0 +namespace: chebi_ontology +def: "Any saturated fatty acid anion containing 6 carbons. Formed by deprotonation of the carboxylic acid moiety. Major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "115.076" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "115.15034" RELATED MASS [ChEBI] +synonym: "[O-]C([*])=O" RELATED SMILES [ChEBI] +synonym: "C6H11O2" RELATED FORMULA [ChEBI] +synonym: "fatty acid 6:0" RELATED [UniProt] +is_a: CHEBI:58953 ! saturated fatty acid anion +is_a: CHEBI:59558 ! medium-chain fatty acid anion + +[Term] +id: CHEBI:78117 +name: fatty acid anion 8:0 +namespace: chebi_ontology +def: "Any saturated fatty acid anion containing 8 carbons. Formed by deprotonation of the carboxylic acid moiety. Major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "143.107" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "143.20350" RELATED MASS [ChEBI] +synonym: "[O-]C([*])=O" RELATED SMILES [ChEBI] +synonym: "C8H15O2" RELATED FORMULA [ChEBI] +synonym: "fatty acid 8:0" RELATED [UniProt] +is_a: CHEBI:58953 ! saturated fatty acid anion + +[Term] +id: CHEBI:78118 +name: fatty acid anion 10:0 +namespace: chebi_ontology +def: "Any saturated fatty acid anion containing 10 carbons. Formed by deprotonation of the carboxylic acid moiety. Major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "171.139" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "171.25670" RELATED MASS [ChEBI] +synonym: "[O-]C([*])=O" RELATED SMILES [ChEBI] +synonym: "C10H19O2" RELATED FORMULA [ChEBI] +synonym: "fatty acid 10:0" RELATED [UniProt] +is_a: CHEBI:58953 ! saturated fatty acid anion + +[Term] +id: CHEBI:78295 +name: food component +namespace: chebi_ontology +def: "Any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants." [] +subset: 3_STAR +synonym: "dietary component" RELATED [ChEBI] +synonym: "dietary components" RELATED [ChEBI] +synonym: "food components" RELATED [ChEBI] +is_a: CHEBI:52211 ! physiological role + +[Term] +id: CHEBI:78298 +name: environmental contaminant +namespace: chebi_ontology +def: "Any minor or unwanted substance introduced into the environment that can have undesired effects." [] +subset: 3_STAR +synonym: "environmental contaminants" RELATED [ChEBI] +is_a: CHEBI:51086 ! chemical role + +[Term] +id: CHEBI:78320 +name: 2-hydroxypropanoic acid +namespace: chebi_ontology +def: "A 2-hydroxy monocarboxylic acid that is propanoic acid in which one of the alpha-hydrogens is replaced by a hydroxy group." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2-Hydroxypropanoic acid" EXACT [KEGG_COMPOUND] +synonym: "2-hydroxypropanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "2-Hydroxypropionic acid" RELATED [KEGG_COMPOUND] +synonym: "90.032" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "90.07790" RELATED MASS [ChEBI] +synonym: "C3H6O3" RELATED FORMULA [ChEBI] +synonym: "CC(O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C3H6O3/c1-2(4)3(5)6/h2,4H,1H3,(H,5,6)" RELATED InChI [ChEBI] +synonym: "JVTAAEKCZFNVCJ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "Lactic acid" RELATED [KEGG_COMPOUND] +xref: CAS:50-21-5 "KEGG COMPOUND" +xref: KEGG:C01432 +xref: KEGG:D00111 +is_a: CHEBI:49302 ! 2-hydroxy monocarboxylic acid +relationship: has_functional_parent CHEBI:30768 ! propionic acid +relationship: has_role CHEBI:83056 ! Daphnia magna metabolite +relationship: has_role CHEBI:84735 ! algal metabolite +relationship: is_conjugate_acid_of CHEBI:24996 ! lactate + +[Term] +id: CHEBI:78366 +name: EC 2.7.1.1 (hexokinase) inhibitor +namespace: chebi_ontology +def: "An EC 2.7.1.* (phosphotransferases with an alcohol group as acceptor) inhibitor that interferes with the action of hexokinase, EC 2.7.1.1, an enzyme that phosphorylates hexoses forming hexose phosphate." [] +subset: 3_STAR +synonym: "ATP-dependent hexokinase inhibitor" RELATED [ChEBI] +synonym: "ATP-dependent hexokinase inhibitors" RELATED [ChEBI] +synonym: "ATP:D-hexose 6-phosphotransferase inhibitor" RELATED [ChEBI] +synonym: "ATP:D-hexose 6-phosphotransferase inhibitors" RELATED [ChEBI] +synonym: "EC 2.7.1.1 (hexokinase) inhibitors" RELATED [ChEBI] +synonym: "EC 2.7.1.1 inhibitor" RELATED [ChEBI] +synonym: "EC 2.7.1.1 inhibitors" RELATED [ChEBI] +synonym: "glucose ATP phosphotransferase inhibitor" RELATED [ChEBI] +synonym: "glucose ATP phosphotransferase inhibitors" RELATED [ChEBI] +synonym: "hexokinase (phosphorylating) inhibitor" RELATED [ChEBI] +synonym: "hexokinase (phosphorylating) inhibitors" RELATED [ChEBI] +synonym: "hexokinase D inhibitor" RELATED [ChEBI] +synonym: "hexokinase D inhibitors" RELATED [ChEBI] +synonym: "hexokinase inhibitor" RELATED [ChEBI] +synonym: "hexokinase inhibitors" RELATED [ChEBI] +synonym: "hexokinase type I inhibitor" RELATED [ChEBI] +synonym: "hexokinase type I inhibitors" RELATED [ChEBI] +synonym: "hexokinase type II inhibitor" RELATED [ChEBI] +synonym: "hexokinase type II inhibitors" RELATED [ChEBI] +synonym: "hexokinase type III inhibitor" RELATED [ChEBI] +synonym: "hexokinase type III inhibitors" RELATED [ChEBI] +synonym: "hexokinase type IV glucokinase inhibitor" RELATED [ChEBI] +synonym: "hexokinase type IV glucokinase inhibitors" RELATED [ChEBI] +synonym: "hexokinase type IV inhibitor" RELATED [ChEBI] +synonym: "hexokinase type IV inhibitors" RELATED [ChEBI] +xref: Wikipedia:Hexokinase +is_a: CHEBI:50916 ! lipid kinase inhibitor +is_a: CHEBI:76881 ! EC 2.7.1.* (phosphotransferases with an alcohol group as acceptor) inhibitor + +[Term] +id: CHEBI:78377 +name: EC 1.3.1.8 [acyl-CoA dehydrogenase (NADP(+))] inhibitor +namespace: chebi_ontology +def: "An EC 1.3.1.* (oxidoreductase acting on donor CH-CH group, NAD(+) or NADP(+) as acceptor) inhibitor that interferes with the action of acyl-CoA dehydrogenase (NADP(+)), EC 1.3.1.8." [] +subset: 3_STAR +synonym: "2-enoyl-CoA reductase inhibitor" RELATED [ChEBI] +synonym: "2-enoyl-CoA reductase inhibitors" RELATED [ChEBI] +synonym: "acyl-CoA dehydrogenase (NADP(+)) (EC 1.3.1.8) inhibitor" RELATED [ChEBI] +synonym: "acyl-CoA dehydrogenase (NADP(+)) (EC 1.3.1.8) inhibitors" RELATED [ChEBI] +synonym: "acyl-CoA dehydrogenase (NADP(+)) inhibitor" RELATED [ChEBI] +synonym: "acyl-CoA dehydrogenase (NADP(+)) inhibitors" RELATED [ChEBI] +synonym: "acyl-CoA:NADP(+) 2-oxidoreductase inhibitor" RELATED [ChEBI] +synonym: "acyl-CoA:NADP(+) 2-oxidoreductase inhibitors" RELATED [ChEBI] +synonym: "crotonyl coenzyme A reductase inhibitor" RELATED [ChEBI] +synonym: "crotonyl coenzyme A reductase inhibitors" RELATED [ChEBI] +synonym: "crotonyl-CoA reductase inhibitor" RELATED [ChEBI] +synonym: "crotonyl-CoA reductase inhibitors" RELATED [ChEBI] +synonym: "dehydrogenase, acyl coenzyme A (nicotinamide adenine dinucleotide phosphate) inhibitor" RELATED [ChEBI] +synonym: "dehydrogenase, acyl coenzyme A (nicotinamide adenine dinucleotide phosphate) inhibitors" RELATED [ChEBI] +synonym: "EC 1.3.1.8 [acyl-CoA dehydrogenase (NADP(+))] inhibitors" RELATED [ChEBI] +synonym: "EC 1.3.1.8 inhibitor" RELATED [ChEBI] +synonym: "EC 1.3.1.8 inhibitors" RELATED [ChEBI] +synonym: "enoyl coenzyme A reductase inhibitor" RELATED [ChEBI] +synonym: "enoyl coenzyme A reductase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Acyl-CoA_dehydrogenase_(NADP%2B) +is_a: CHEBI:76857 ! EC 1.3.1.* (oxidoreductase acting on donor CH-CH group, NAD(+) or NADP(+) as acceptor) inhibitor + +[Term] +id: CHEBI:78433 +name: refrigerant +namespace: chebi_ontology +def: "A substance used in a thermodynamic heat pump cycle or refrigeration cycle that undergoes a phase change from a gas to a liquid and back. Refrigerants are used in air-conditioning systems and freezers or refrigerators and are assigned a \"R\" number (by ASHRAE - formerly the American Society of Heating, Refrigerating and Air Conditioning Engineers), which is determined systematically according to their molecular structure." [] +subset: 3_STAR +synonym: "refrigerants" RELATED [ChEBI] +xref: Wikipedia:Refrigerant +is_a: CHEBI:33232 ! application + +[Term] +id: CHEBI:78604 +name: ursodeoxycholate +namespace: chebi_ontology +def: "A bile acid anion that is the conjugate base of ursodeoxycholic acid, obtained by deprotonation of the carboxy group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "(3alpha,5beta,7beta)-3,7-dihydroxycholan-24-oate" EXACT IUPAC_NAME [IUPAC] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "391.285" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "391.56460" RELATED MASS [ChEBI] +synonym: "C24H39O4" RELATED FORMULA [ChEBI] +synonym: "C[C@H](CCC([O-])=O)[C@H]1CC[C@H]2[C@@H]3[C@@H](O)C[C@@H]4C[C@H](O)CC[C@]4(C)[C@H]3CC[C@]12C" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C24H40O4/c1-14(4-7-21(27)28)17-5-6-18-22-19(9-11-24(17,18)3)23(2)10-8-16(25)12-15(23)13-20(22)26/h14-20,22,25-26H,4-13H2,1-3H3,(H,27,28)/p-1/t14-,15+,16-,17-,18+,19+,20+,22+,23+,24-/m1/s1" RELATED InChI [ChEBI] +synonym: "RUDATBOHQWOJDD-UZVSRGJWSA-M" RELATED InChIKey [ChEBI] +synonym: "ursodeoxycholate" EXACT [UniProt] +xref: Reaxys:5305486 "Reaxys" +is_a: CHEBI:131878 ! cholanic acid anion +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_base_of CHEBI:9907 ! ursodeoxycholic acid + +[Term] +id: CHEBI:78608 +name: alpha-amino acid zwitterion +namespace: chebi_ontology +alt_id: CHEBI:83409 +def: "An amino acid zwitterion obtained by transfer of a proton from the carboxy to the amino group of any alpha-amino acid; major species at pH 7.3." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "74.024" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[NH3+]C([*])C([O-])=O" RELATED SMILES [ChEBI] +synonym: "an alpha-amino acid" RELATED [UniProt] +synonym: "C2H4NO2R" RELATED FORMULA [ChEBI] +xref: MetaCyc:Alpha-Amino-Acids "SUBMITTER" +is_a: CHEBI:35238 ! amino acid zwitterion +relationship: is_tautomer_of CHEBI:33704 ! alpha-amino acid + +[Term] +id: CHEBI:78616 +name: carbohydrates and carbohydrate derivatives +namespace: chebi_ontology +def: "Any organooxygen compound that is a polyhydroxy-aldehyde or -ketone, or a compound derived from one. Carbohydrates contain only carbon, hydrogen and oxygen and usually have an empirical formula Cm(H2O)n; carbohydrate derivatives may contain other elements by substitution or condensation." [] +subset: 3_STAR +synonym: "carbohydrates and derivatives" RELATED [ChEBI] +synonym: "carbohydrates and their derivatives" RELATED [ChEBI] +is_a: CHEBI:36963 ! organooxygen compound +property_value: IAO:0000412 http://purl.obolibrary.org/obo/chebi.owl + +[Term] +id: CHEBI:78675 +name: fundamental metabolite +namespace: chebi_ontology +def: "Any metabolite produced by all living cells." [] +subset: 3_STAR +synonym: "essential metabolite" RELATED [ChEBI] +synonym: "essential metabolites" RELATED [ChEBI] +synonym: "fundamental metabolites" RELATED [ChEBI] +is_a: CHEBI:25212 ! metabolite +relationship: MCO:0000858 MCO:0000864 ! sucrose 15% carbon source + +[Term] +id: CHEBI:78682 +name: D-fructose 1,6-bisphosphate +namespace: chebi_ontology +def: "A ketohexose bisphosphate that is D-fructose substituted by phosphate groups at positions 1 and 6. It is an intermediate in the glycolysis metabolic pathway." [] +subset: 3_STAR +synonym: "Diphosphofructose" RELATED [HMDB] +xref: HMDB:HMDB01058 +xref: Wikipedia:Fructose_1\,6-bisphosphate +is_a: CHEBI:24970 ! ketohexose bisphosphate +relationship: has_role CHEBI:78675 ! fundamental metabolite + +[Term] +id: CHEBI:78737 +name: fructose 1-phosphate +namespace: chebi_ontology +def: "A ketohexose monophosphate consisting of fructose having a phosphate group located at the 1-position" [] +subset: 3_STAR +xref: Wikipedia:Fructose_1-phosphate +is_a: CHEBI:24971 ! ketohexose monophosphate +relationship: has_role CHEBI:78675 ! fundamental metabolite + +[Term] +id: CHEBI:78840 +name: olefinic compound +namespace: chebi_ontology +def: "Any organic molecular entity that contains at least one C=C bond." [] +subset: 3_STAR +synonym: "olefinic compounds" RELATED [ChEBI] +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:78870 +name: sodium nitrite +namespace: chebi_ontology +def: "An inorganic sodium salt having nitrite as the counterion. Used as a food preservative and antidote to cyanide poisoning." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "68.983" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "68.99530" RELATED MASS [ChEBI] +synonym: "[Na+].[O-]N=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/HNO2.Na/c2-1-3;/h(H,2,3);/q;+1/p-1" RELATED InChI [ChEBI] +synonym: "LPXPTNMVRIOKMN-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "NaNO2" RELATED [ChEBI] +synonym: "Natrium nitrit" RELATED [ChemIDplus] +synonym: "Nitrite de sodium" RELATED [ChemIDplus] +synonym: "Nitrito sodico" RELATED [ChemIDplus] +synonym: "NNaO2" RELATED FORMULA [ChEBI] +synonym: "sodium nitrite" EXACT IUPAC_NAME [IUPAC] +xref: CAS:7632-00-0 "KEGG DRUG" +xref: colombos:NaNO2 +xref: KEGG:D05865 +xref: PMID:24200576 "Europe PMC" +xref: PMID:24266433 "Europe PMC" +xref: PMID:24333935 "Europe PMC" +xref: PMID:24363302 "Europe PMC" +xref: PMID:24535441 "Europe PMC" +xref: PMID:24639423 "Europe PMC" +xref: PMID:24658348 "Europe PMC" +xref: PMID:24834717 "Europe PMC" +xref: PMID:24861891 "Europe PMC" +xref: PMID:24878382 "Europe PMC" +xref: PMID:24898570 "Europe PMC" +xref: PMID:24929713 "Europe PMC" +xref: Reaxys:906771 "Reaxys" +xref: Wikipedia:Sodium_nitrite +is_a: CHEBI:38702 ! inorganic sodium salt +is_a: CHEBI:46648 ! nitrite salt +relationship: has_role CHEBI:35674 ! antihypertensive agent +relationship: has_role CHEBI:64909 ! poison +relationship: has_role CHEBI:65256 ! antimicrobial food preservative +relationship: has_role CHEBI:77962 ! food antioxidant +relationship: has_role CHEBI:90749 ! antidote to cyanide poisoning + +[Term] +id: CHEBI:78947 +name: archaeal metabolite +namespace: chebi_ontology +def: "Any prokaryotic metabolite produced during a metabolic reaction in single-celled microorganisms, archaea." [] +subset: 3_STAR +synonym: "archaeal metabolites" RELATED [ChEBI] +is_a: CHEBI:75787 ! prokaryotic metabolite + +[Term] +id: CHEBI:79020 +name: alpha,beta-unsaturated monocarboxylic acid +namespace: chebi_ontology +def: "A monocarboxylic acid in which the carbon of the carboxy group is directly attached to a C=C or C#C bond." [] +subset: 3_STAR +synonym: "2,3-unsaturated monocarboxylic acid" RELATED [ChEBI] +synonym: "2,3-unsaturated monocarboxylic acids" RELATED [ChEBI] +synonym: "alpha,beta-unsaturated monocarboxylic acids" RELATED [ChEBI] +is_a: CHEBI:25384 ! monocarboxylic acid + +[Term] +id: CHEBI:79089 +name: ceric oxide +namespace: chebi_ontology +def: "A metal oxide with formula CeO2. It is used for polishing glass, in coatings for infra-red filters to prevent reflection, and as an oxidant and catalyst in organic synthesis." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "171.895" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "172.11500" RELATED MASS [ChEBI] +synonym: "CeO2" RELATED FORMULA [ChEBI] +synonym: "CeO2" RELATED [ChEBI] +synonym: "ceria" RELATED [ChemIDplus] +synonym: "ceric dioxide" RELATED [ChemIDplus] +synonym: "cerium dioxide" RELATED [ChemIDplus] +synonym: "cerium(4+) oxide" RELATED [ChemIDplus] +synonym: "cerium(IV) oxide" RELATED [ChEBI] +synonym: "cerium(IV)dioxide" RELATED [ChemIDplus] +synonym: "CETPSERCERDGAM-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "dioxocerium" EXACT IUPAC_NAME [IUPAC] +synonym: "InChI=1S/Ce.2O" RELATED InChI [ChEBI] +synonym: "O=[Ce]=O" RELATED SMILES [ChEBI] +xref: CAS:1306-38-3 "ChemIDplus" +xref: Patent:US2564241 +xref: PMID:21787599 "Europe PMC" +xref: PMID:24300997 "Europe PMC" +xref: Reaxys:11323272 "Reaxys" +xref: Reaxys:23048445 "Reaxys" +xref: Wikipedia:Cerium(IV)_oxide +is_a: CHEBI:133331 ! metal oxide +is_a: CHEBI:37261 ! cerium molecular entity + +[Term] +id: CHEBI:7916 +name: pantothenic acid +namespace: chebi_ontology +def: "A member of the class of pantothenic acids that is an amide formed from pantoic acid and beta-alanine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "219.111" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "219.23502" RELATED MASS [ChEBI] +synonym: "3-(2,4-dihydroxy-3,3-dimethylbutanamido)propanoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "C9H17NO5" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(C)(CO)C(O)C(=O)NCCC(O)=O" RELATED SMILES [ChEBI] +synonym: "GHOKWGTUZJEAQD-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C9H17NO5/c1-9(2,5-11)7(14)8(15)10-4-3-6(12)13/h7,11,14H,3-5H2,1-2H3,(H,10,15)(H,12,13)" RELATED InChI [ChEBI] +synonym: "N-(2,4-dihydroxy-3,3-dimethylbutanoyl)-beta-alanine" RELATED [ChEBI] +synonym: "Pantothenic acid" EXACT [KEGG_COMPOUND] +xref: Beilstein:1727062 "Beilstein" +xref: CAS:599-54-2 "ChemIDplus" +xref: colombos:PANTOTHENIC_ACID +xref: DrugBank:DB01783 +xref: HMDB:HMDB00210 +xref: KEGG:C00864 +xref: KEGG:D07413 +xref: PMID:24727172 "Europe PMC" +xref: Reaxys:1727062 "Reaxys" +xref: Wikipedia:Pantothenic_acid +is_a: CHEBI:25848 ! pantothenic acids +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: is_conjugate_acid_of CHEBI:16454 ! pantothenate + +[Term] +id: CHEBI:7934 +name: paromomycin +namespace: chebi_ontology +alt_id: CHEBI:44703 +def: "An amino cyclitol glycoside that is the 1-O-(2-amino-2-deoxy-alpha-D-glucopyranoside) and the 3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranoside of 4,6-diamino-2,3-dihydroxycyclohexane (the 1R,2R,3S,4R,6S diastereoisomer). It is obtained from various Streptomyces species. A broad-spectrum antibiotic, it is used (generally as the sulfate salt) for the treatment of acute and chronic intestinal protozoal infections, but is not effective for extraintestinal protozoal infections. It is also used as a therapeutic against visceral leishmaniasis." [] +subset: 3_STAR +synonym: "(1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside" EXACT IUPAC_NAME [IUPAC] +synonym: "(1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside" RELATED [PDBeChem] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "615.296" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "615.62850" RELATED MASS [ChEBI] +synonym: "Aminosidin" RELATED [KEGG_COMPOUND] +synonym: "aminosidine" RELATED [ChemIDplus] +synonym: "C23H45N5O14" RELATED FORMULA [ChEBI] +synonym: "Catenulin" RELATED [KEGG_COMPOUND] +synonym: "crestomycin" RELATED [ChemIDplus] +synonym: "estomycin" RELATED [ChemIDplus] +synonym: "Hydroxymycin" RELATED [KEGG_COMPOUND] +synonym: "hydroxymycin" RELATED [ChemIDplus] +synonym: "InChI=1S/C23H45N5O14/c24-2-7-13(32)15(34)10(27)21(37-7)41-19-9(4-30)39-23(17(19)36)42-20-12(31)5(25)1-6(26)18(20)40-22-11(28)16(35)14(33)8(3-29)38-22/h5-23,29-36H,1-4,24-28H2/t5-,6+,7+,8-,9-,10-,11-,12+,13-,14-,15-,16-,17-,18-,19-,20-,21-,22-,23+/m1/s1" RELATED InChI [ChEBI] +synonym: "Monomycin A" RELATED [KEGG_COMPOUND] +synonym: "NC[C@@H]1O[C@H](O[C@@H]2[C@@H](CO)O[C@@H](O[C@@H]3[C@@H](O)[C@H](N)C[C@H](N)[C@H]3O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3N)[C@@H]2O)[C@H](N)[C@@H](O)[C@@H]1O" RELATED SMILES [ChEBI] +synonym: "Neomycin E" RELATED [KEGG_COMPOUND] +synonym: "neomycin E" RELATED [ChemIDplus] +synonym: "paromomicina" RELATED INN [ChemIDplus] +synonym: "PAROMOMYCIN" EXACT [PDBeChem] +synonym: "Paromomycin" EXACT [KEGG_COMPOUND] +synonym: "paromomycin" RELATED INN [WHO_MedNet] +synonym: "Paromomycin I" RELATED [KEGG_COMPOUND] +synonym: "paromomycine" RELATED INN [ChemIDplus] +synonym: "paromomycinum" RELATED INN [ChemIDplus] +synonym: "paucimycin" RELATED [ChemIDplus] +synonym: "paucimycinum" RELATED [ChemIDplus] +synonym: "R 400" RELATED [ChemIDplus] +synonym: "R-400" RELATED [ChEBI] +synonym: "UOZODPSAJZTQNH-LSWIJEOBSA-N" RELATED InChIKey [ChEBI] +synonym: "Zygomycin A1" RELATED [KEGG_COMPOUND] +xref: CAS:7542-37-2 "KEGG COMPOUND" +xref: colombos:PAROMOMYCIN +xref: colombos:PAROMOMYCIN\:+UNKNOWN +xref: Drug_Central:2067 "DrugCentral" +xref: DrugBank:DB01421 +xref: KEGG:C00832 +xref: KEGG:D07467 +xref: Patent:US2895876 +xref: Patent:US2916485 +xref: PDBeChem:PAR +xref: PMID:18447603 "Europe PMC" +xref: PMID:18947845 "Europe PMC" +xref: PMID:8036682 "Europe PMC" +xref: Reaxys:72285 "Reaxys" +is_a: CHEBI:22479 ! amino cyclitol glycoside +is_a: CHEBI:22507 ! aminoglycoside antibiotic +relationship: has_functional_parent CHEBI:27955 ! streptamine +relationship: has_role CHEBI:35443 ! anthelminthic drug +relationship: has_role CHEBI:35820 ! antiprotozoal drug +relationship: has_role CHEBI:36047 ! antibacterial drug + +[Term] +id: CHEBI:79387 +name: trivalent inorganic anion +namespace: chebi_ontology +def: "Any inorganic anion with a valency of three." [] +subset: 3_STAR +synonym: "trivalent inorganic anions" RELATED [ChEBI] +is_a: CHEBI:24834 ! inorganic anion + +[Term] +id: CHEBI:79388 +name: divalent inorganic anion +namespace: chebi_ontology +def: "Any inorganic anion with a valency of two." [] +subset: 3_STAR +synonym: "divalent inorganic anions" RELATED [ChEBI] +is_a: CHEBI:24834 ! inorganic anion + +[Term] +id: CHEBI:79389 +name: monovalent inorganic anion +namespace: chebi_ontology +def: "Any inorganic anion with a valency of one." [] +subset: 3_STAR +synonym: "monovalent inorganic anions" RELATED [ChEBI] +is_a: CHEBI:24834 ! inorganic anion + +[Term] +id: CHEBI:80291 +name: aliphatic nitrile +namespace: chebi_ontology +def: "Any nitrile derived from an aliphatic compound." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "26.003" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[*]C#N" RELATED SMILES [ChEBI] +synonym: "an aliphatic nitrile" RELATED [UniProt] +synonym: "CNR" RELATED FORMULA [ChEBI] +xref: KEGG:C16072 +is_a: CHEBI:18379 ! nitrile + +[Term] +id: CHEBI:80368 +name: L-Ascorbate 6-phosphate +namespace: chebi_ontology +subset: 2_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "255.998" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "256.10400" RELATED MASS [ChEBI] +synonym: "C6H9O9P" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H9O9P/c7-2(1-14-16(11,12)13)5-3(8)4(9)6(10)15-5/h2,5,7-9H,1H2,(H2,11,12,13)/t2?,5-/m1/s1" RELATED InChI [ChEBI] +synonym: "KIENGQUGHPTFGC-DOAHDZERSA-N" RELATED InChIKey [ChEBI] +synonym: "OC(COP(O)(O)=O)[C@H]1OC(=O)C(O)=C1O" RELATED SMILES [ChEBI] +xref: KEGG:C16186 +is_a: CHEBI:25381 ! monoalkyl phosphate + +[Term] +id: CHEBI:82655 +name: animal growth promotant +namespace: chebi_ontology +def: "Substances that are administered to farmed animals to improve productivity by promoting weight gain, increasing muscle mass, limiting fat deposition, reducing feed consumption, and reducing waste production." [] +subset: 3_STAR +synonym: "animal growth promotants" RELATED [ChEBI] +synonym: "animal growth promoter" RELATED [ChEBI] +synonym: "animal growth promoters" RELATED [ChEBI] +xref: PMID:22444918 "Europe PMC" +xref: PMID:2745641 "Europe PMC" +xref: PMID:6226938 "Europe PMC" +is_a: CHEBI:33286 ! agrochemical + +[Term] +id: CHEBI:82663 +name: elemental iron +namespace: chebi_ontology +def: "An elemental molecular entity in which all of the atoms have atomic number 26." [] +subset: 3_STAR +is_a: CHEBI:24873 ! iron molecular entity +is_a: CHEBI:33259 ! elemental molecular entity + +[Term] +id: CHEBI:8273 +name: plumbagin +namespace: chebi_ontology +def: "A hydroxy-1,4-naphthoquinone that is 1,4-naphthoquinone in which the hydrogens at positions 2 and 5 are substituted by methyl and hydroxy groups, respectively." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "188.047" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "188.17942" RELATED MASS [ChEBI] +synonym: "2-methyl-5-hydroxy-1,4-naphthoquinone" RELATED [ChemIDplus] +synonym: "2-methyljuglone" RELATED [ChEBI] +synonym: "5-hydroxy-2-methyl-1,4-naphthalenedione" RELATED [ChemIDplus] +synonym: "5-hydroxy-2-methyl-1,4-naphthoquinone" RELATED [ChEBI] +synonym: "5-hydroxy-2-methylnaphthalene-1,4-dione" EXACT IUPAC_NAME [IUPAC] +synonym: "C11H8O3" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC1=CC(=O)c2c(O)cccc2C1=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C11H8O3/c1-6-5-9(13)10-7(11(6)14)3-2-4-8(10)12/h2-5,12H,1H3" RELATED InChI [ChEBI] +synonym: "plumbaein" RELATED [ChEBI] +synonym: "Plumbagin" EXACT [KEGG_COMPOUND] +synonym: "plumbagine" RELATED [MetaCyc] +synonym: "plumbagone" RELATED [ChEBI] +synonym: "VCMMXZQDRFWYSE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:1870475 "ChemIDplus" +xref: CAS:481-42-5 "ChemIDplus" +xref: Gmelin:959690 "Gmelin" +xref: KEGG:C10387 +xref: KNApSAcK:C00002852 +xref: LINCS:LSM-37061 +xref: MetaCyc:CPD-4461 +xref: Patent:CN1473468 +xref: Patent:IN183682 +xref: Patent:IN191797 +xref: PMID:14727919 "Europe PMC" +xref: PMID:14762525 "Europe PMC" +xref: PMID:16078700 "Europe PMC" +xref: PMID:16624823 "Europe PMC" +xref: PMID:18974148 "Europe PMC" +xref: PMID:19748668 "Europe PMC" +xref: PMID:20858709 "Europe PMC" +xref: PMID:21064184 "Europe PMC" +xref: PMID:21559086 "Europe PMC" +xref: PMID:21658027 "Europe PMC" +xref: PMID:21741707 "Europe PMC" +xref: Reaxys:1870475 "Reaxys" +xref: Wikipedia:Plumbagin +is_a: CHEBI:132157 ! hydroxy-1,4-naphthoquinone +is_a: CHEBI:33853 ! phenols +relationship: has_role CHEBI:25212 ! metabolite +relationship: has_role CHEBI:35610 ! antineoplastic agent +relationship: has_role CHEBI:50249 ! anticoagulant +relationship: has_role CHEBI:50847 ! immunological adjuvant + +[Term] +id: CHEBI:82828 +name: oleanolate +namespace: chebi_ontology +def: "A monocarboxylic acid anion that is the conjugate base of oleanolic acid, obtained by deprotonation of the carboxy group; major species at pH 7.3." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "3beta-hydroxyolean-12-en-28-oate" EXACT IUPAC_NAME [IUPAC] +synonym: "455.353" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "455.69290" RELATED MASS [ChEBI] +synonym: "C30H47O3" RELATED FORMULA [ChEBI] +synonym: "CC1(C)CC[C@@]2(CC[C@]3(C)C(=CC[C@@H]4[C@@]5(C)CC[C@H](O)C(C)(C)[C@@H]5CC[C@@]34C)[C@@H]2C1)C([O-])=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C30H48O3/c1-25(2)14-16-30(24(32)33)17-15-28(6)19(20(30)18-25)8-9-22-27(5)12-11-23(31)26(3,4)21(27)10-13-29(22,28)7/h8,20-23,31H,9-18H2,1-7H3,(H,32,33)/p-1/t20-,21-,22+,23-,27-,28+,29+,30-/m0/s1" RELATED InChI [ChEBI] +synonym: "MIJYXULNPSFWEK-GTOFXWBISA-M" RELATED InChIKey [ChEBI] +synonym: "oleanolate" EXACT [UniProt] +xref: PMID:18835348 "SUBMITTER" +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: has_role CHEBI:76924 ! plant metabolite +relationship: is_conjugate_base_of CHEBI:37659 ! oleanolic acid + +[Term] +id: CHEBI:83039 +name: crustacean metabolite +namespace: chebi_ontology +def: "An animal metabolite produced by arthropods such as crabs, lobsters, crayfish, shrimps and krill." [] +subset: 3_STAR +synonym: "crustacean metabolites" RELATED [ChEBI] +is_a: CHEBI:75767 ! animal metabolite + +[Term] +id: CHEBI:83056 +name: Daphnia magna metabolite +namespace: chebi_ontology +def: "A Daphnia metabolite produced by the species Daphnia magna." [] +subset: 3_STAR +synonym: "Daphnia magna metabolites" RELATED [ChEBI] +is_a: CHEBI:83057 ! Daphnia metabolite + +[Term] +id: CHEBI:83057 +name: Daphnia metabolite +namespace: chebi_ontology +def: "A crustacean metabolite produced by the genus of small planktonic arthropods, Daphnia" [] +subset: 3_STAR +synonym: "Daphnia metabolites" RELATED [ChEBI] +xref: Wikipedia:Daphnia +is_a: CHEBI:83039 ! crustacean metabolite + +[Term] +id: CHEBI:8309 +name: polymyxin B1 +namespace: chebi_ontology +def: "A polymyxin having a (6R)-6-methyloctanoyl group at the amino terminus." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "1202.750" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "1203.47670" RELATED MASS [ChEBI] +synonym: "4,10-anhydro{N-[(6R)-6-methyloctanoyl]-L-2,4-diaminobutanoyl-L-threonyl-L-2,4-diaminobutanoyl-L-2,4-diaminobutanoyl-L-2,4-diaminobutanoyl-D-phenylalanyl-L-leucyl-L-2,4-diaminobutanoyl-L-2,4-diaminobutanoyl-L-threonine}" EXACT IUPAC_NAME [IUPAC] +synonym: "C56H98N16O13" RELATED FORMULA [ChEBI] +synonym: "CC[C@@H](C)CCCCC(=O)N[C@@H](CCN)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CCN)C(=O)N[C@H]1CCNC(=O)[C@@H](NC(=O)[C@H](CCN)NC(=O)[C@H](CCN)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](Cc2ccccc2)NC(=O)[C@H](CCN)NC1=O)[C@@H](C)O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C56H98N16O13/c1-7-32(4)13-11-12-16-44(75)63-36(17-23-57)51(80)72-46(34(6)74)56(85)68-39(20-26-60)48(77)67-41-22-28-62-55(84)45(33(5)73)71-52(81)40(21-27-61)65-47(76)37(18-24-58)66-53(82)42(29-31(2)3)69-54(83)43(30-35-14-9-8-10-15-35)70-49(78)38(19-25-59)64-50(41)79/h8-10,14-15,31-34,36-43,45-46,73-74H,7,11-13,16-30,57-61H2,1-6H3,(H,62,84)(H,63,75)(H,64,79)(H,65,76)(H,66,82)(H,67,77)(H,68,85)(H,69,83)(H,70,78)(H,71,81)(H,72,80)/t32-,33-,34-,36+,37+,38+,39+,40+,41+,42+,43-,45+,46+/m1/s1" RELATED InChI [ChEBI] +synonym: "polymycin B" RELATED [ChEBI] +synonym: "Polymyxin B(1)" RELATED [ChEBI] +synonym: "polymyxin B1" EXACT [ChEBI] +synonym: "WQVJHHACXVLGBL-GOVYWFKWSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:8609638 "Beilstein" +xref: CAS:4135-11-9 "ChemIDplus" +xref: PMID:13058849 "Europe PMC" +xref: PMID:14212410 "Europe PMC" +xref: PMID:1650428 "Europe PMC" +xref: PMID:26803416 "Europe PMC" +xref: Reaxys:9838039 "Reaxys" +is_a: CHEBI:59062 ! polymyxin + +[Term] +id: CHEBI:8310 +name: Polymyxin B sulfate +namespace: chebi_ontology +subset: 2_STAR +synonym: "C55H95N16O13R.(H2O4S)x" RELATED FORMULA [KEGG_COMPOUND] +synonym: "Polymixin B sulfate" RELATED [KEGG_COMPOUND] +synonym: "Polymyxin B sulfate" EXACT [KEGG_COMPOUND] +xref: CAS:1405-20-5 "KEGG COMPOUND" +xref: KEGG:C11613 +xref: KEGG:D01066 +is_a: CHEBI:60027 ! polymer + +[Term] +id: CHEBI:83169 +name: N-acyl homoserine lactone +namespace: chebi_ontology +def: "A monocarboxylic acid amide that is the N-acyl derivative of homoserine lactone. They are a class of autoinducers generally involved in bacterial quorum sensing." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "128.035" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "[*]C(=O)NC1CCOC1=O" RELATED SMILES [ChEBI] +synonym: "AHLs" RELATED [ChEBI] +synonym: "C5H6NO3R" RELATED FORMULA [ChEBI] +synonym: "N-acyl homoserine lactones" RELATED [ChEBI] +synonym: "N-AHLs" RELATED [ChEBI] +xref: Wikipedia:N-Acyl_homoserine_lactone +is_a: CHEBI:29347 ! monocarboxylic acid amide +is_a: CHEBI:37581 ! gamma-lactone +relationship: has_functional_parent CHEBI:17289 ! homoserine lactone +relationship: has_role CHEBI:71338 ! autoinducer + +[Term] +id: CHEBI:83347 +name: organosulfonic ester +namespace: chebi_ontology +def: "An ester resulting from the formal condensation of the hydroxy group of an alcohol, phenol, heteroarenol, or enol with an organosulfonic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "79.957" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "80.06300" RELATED MASS [ChEBI] +synonym: "[*]S(=O)(=O)O[*]" RELATED SMILES [ChEBI] +synonym: "O3SR2" RELATED FORMULA [ChEBI] +synonym: "organosulfonate ester" RELATED [ChEBI] +synonym: "organosulfonate esters" RELATED [ChEBI] +synonym: "organosulfonic esters" RELATED [ChEBI] +is_a: CHEBI:33424 ! sulfur oxoacid derivative +is_a: CHEBI:35701 ! ester +relationship: has_functional_parent CHEBI:33551 ! organosulfonic acid + +[Term] +id: CHEBI:83403 +name: monochlorobenzenes +namespace: chebi_ontology +def: "Any member of the class of chlorobenzenes containing a mono- or poly-substituted benzene ring in which only one substituent is chlorine." [] +subset: 3_STAR +is_a: CHEBI:23132 ! chlorobenzenes + +[Term] +id: CHEBI:83811 +name: proteinogenic amino acid derivative +namespace: chebi_ontology +def: "Any derivative of a proteinogenic amino acid resulting from reaction at an amino group, carboxy group, or a side-chain functional group, or from the replacement of any hydrogen by a heteroatom." [] +subset: 3_STAR +synonym: "canonical amino acid derivative" RELATED [ChEBI] +synonym: "canonical amino acid derivatives" RELATED [ChEBI] +synonym: "canonical amino-acid derivative" RELATED [ChEBI] +synonym: "canonical amino-acid derivatives" RELATED [ChEBI] +synonym: "proteinogenic amino acid derivatives" RELATED [ChEBI] +synonym: "proteinogenic amino-acid derivative" RELATED [ChEBI] +synonym: "proteinogenic amino-acid derivatives" RELATED [ChEBI] +is_a: CHEBI:83821 ! amino acid derivative +relationship: has_functional_parent CHEBI:83813 ! proteinogenic amino acid + +[Term] +id: CHEBI:83812 +name: non-proteinogenic amino acid derivative +namespace: chebi_ontology +def: "Any derivative of a non-proteinogenic amino acid resulting from reaction at an amino group or carboxy group, or from the replacement of any hydrogen by a heteroatom." [] +subset: 3_STAR +synonym: "non-canonical amino acid derivative" RELATED [ChEBI] +synonym: "non-canonical amino-acid derivatives" RELATED [ChEBI] +synonym: "non-proteinogenic amino-acid derivatives" RELATED [ChEBI] +is_a: CHEBI:83821 ! amino acid derivative + +[Term] +id: CHEBI:83813 +name: proteinogenic amino acid +namespace: chebi_ontology +def: "Any of the 23 alpha-amino acids that are precursors to proteins, and are incorporated into proteins during translation. The group includes the 20 amino acids encoded by the nuclear genes of eukaryotes together with selenocysteine, pyrrolysine, and N-formylmethionine. Apart from glycine, which is non-chiral, all have L configuration." [] +subset: 3_STAR +synonym: "canonical amino acid" RELATED [ChEBI] +synonym: "canonical amino acids" RELATED [ChEBI] +synonym: "proteinogenic amino acids" RELATED [ChEBI] +xref: Wikipedia:Proteinogenic_amino_acid +is_a: CHEBI:33575 ! carboxylic acid +is_a: CHEBI:35352 ! organonitrogen compound + +[Term] +id: CHEBI:83820 +name: non-proteinogenic amino acid +namespace: chebi_ontology +def: "Any amino-acid that is not naturally encoded in the genetic code of any organism." [] +subset: 3_STAR +synonym: "non-canonical amino acid" RELATED [ChEBI] +synonym: "non-canonical amino acids" RELATED [ChEBI] +synonym: "non-canonical amino-acid" RELATED [ChEBI] +synonym: "non-canonical amino-acids" RELATED [ChEBI] +synonym: "non-coded amino acid" RELATED [ChEBI] +synonym: "non-coded amino acids" RELATED [ChEBI] +synonym: "non-coded amino-acid" RELATED [ChEBI] +synonym: "non-coded amino-acids" RELATED [ChEBI] +synonym: "non-proteinogenic amino acids" RELATED [ChEBI] +synonym: "non-proteinogenic amino-acid" RELATED [ChEBI] +synonym: "non-proteinogenic amino-acids" RELATED [ChEBI] +xref: Wikipedia:Non-proteinogenic_amino_acids +is_a: CHEBI:33709 ! amino acid + +[Term] +id: CHEBI:83821 +name: amino acid derivative +namespace: chebi_ontology +alt_id: CHEBI:25359 +def: "Any derivative of an amino acid resulting from reaction at an amino group, carboxy group, side-chain functional group, or from the replacement of any hydrogen by a heteroatom. The definition normally excludes peptides containing amino acid residues." [] +subset: 3_STAR +synonym: "amino acid derivatives" RELATED [ChEBI] +synonym: "modified amino acids" RELATED [ChEBI] +is_a: CHEBI:35352 ! organonitrogen compound + +[Term] +id: CHEBI:83824 +name: L-cysteine derivative +namespace: chebi_ontology +def: "A proteinogenic amino acid derivative resulting from the formal reaction of L-cysteine at the amino group, carboxy group, or thiol group, or from the replacement of any hydrogen of L-cysteine by a heteroatom." [] +subset: 3_STAR +synonym: "L-cysteine derivatives" RELATED [ChEBI] +is_a: CHEBI:23509 ! cysteine derivative +is_a: CHEBI:83811 ! proteinogenic amino acid derivative +relationship: has_functional_parent CHEBI:17561 ! L-cysteine + +[Term] +id: CHEBI:8386 +name: pregnane +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "288.282" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "288.51054" RELATED MASS [ChEBI] +synonym: "[H][C@]1(CC)CC[C@@]2([H])[C@]3([H])CCC4([H])CCCC[C@]4(C)[C@@]3([H])CC[C@]12C" RELATED SMILES [ChEBI] +synonym: "C21H36" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C21H36/c1-4-15-9-11-18-17-10-8-16-7-5-6-13-20(16,2)19(17)12-14-21(15,18)3/h15-19H,4-14H2,1-3H3/t15-,16?,17-,18-,19-,20-,21+/m0/s1" RELATED InChI [ChEBI] +synonym: "JWMFYGXQPXQEEM-WZBAXQLOSA-N" RELATED InChIKey [ChEBI] +synonym: "pregnane" EXACT IUPAC_NAME [IUPAC] +xref: CAS:481-26-5 "KEGG COMPOUND" +xref: KEGG:C01523 +is_a: CHEBI:35508 ! steroid fundamental parent + +[Term] +id: CHEBI:83925 +name: non-proteinogenic alpha-amino acid +namespace: chebi_ontology +def: "Any alpha-amino acid which is not a member of the group of 23 proteinogenic amino acids." [] +subset: 3_STAR +synonym: "non-proteinogenic alpha-amino acids" RELATED [ChEBI] +synonym: "non-proteinogenic alpha-amino-acid" RELATED [ChEBI] +synonym: "non-proteinogenic alpha-amino-acids" RELATED [ChEBI] +is_a: CHEBI:33704 ! alpha-amino acid +is_a: CHEBI:83820 ! non-proteinogenic amino acid + +[Term] +id: CHEBI:84055 +name: pentose phosphate +namespace: chebi_ontology +def: "Any phospho sugar that is the phosphate derivative of pentose." [] +subset: 3_STAR +synonym: "pentose phosphates" RELATED [ChEBI] +is_a: CHEBI:33447 ! phospho sugar +is_a: CHEBI:63409 ! pentose derivative + +[Term] +id: CHEBI:84087 +name: human urinary metabolite +namespace: chebi_ontology +def: "Any metabolite (endogenous or exogenous) found in human urine samples." [] +subset: 3_STAR +synonym: "human urinary metabolites" RELATED [ChEBI] +is_a: CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:84135 +name: L-serine derivative +namespace: chebi_ontology +def: "A proteinogenic amino acid derivative resulting from reaction of L-serine at the amino group or the carboxy group, or from the replacement of any hydrogen of L-serine by a heteroatom." [] +subset: 3_STAR +synonym: "L-serine derivatives" RELATED [ChEBI] +is_a: CHEBI:26649 ! serine derivative +is_a: CHEBI:83811 ! proteinogenic amino acid derivative +relationship: has_functional_parent CHEBI:17115 ! L-serine + +[Term] +id: CHEBI:84189 +name: L-threonine derivative +namespace: chebi_ontology +def: "A proteinogenic amino acid derivative resulting from reaction of L-threonine at the amino group or the carboxy group, or from the replacement of any hydrogen of L-threonine by a heteroatom." [] +subset: 3_STAR +synonym: "L-threonine derivatives" RELATED [ChEBI] +is_a: CHEBI:26987 ! threonine derivative +is_a: CHEBI:83811 ! proteinogenic amino acid derivative +relationship: has_functional_parent CHEBI:16857 ! L-threonine + +[Term] +id: CHEBI:8452 +name: 3,6-diaminoacridine +namespace: chebi_ontology +alt_id: CHEBI:44910 +alt_id: CHEBI:45272 +def: "An aminoacridine that is acridine that is substituted by amino groups at positions 3 and 6. A slow-acting bacteriostat that is effective against many Gram-positive bacteria (but ineffective against spores), its salts were formerly used for treatment of burns and infected wounds." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2,8-Diaminoacridine" RELATED [ChemIDplus] +synonym: "209.095" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "209.24650" RELATED MASS [ChEBI] +synonym: "3,6-acridinediamine" RELATED [ChEBI] +synonym: "acridine-3,6-diamine" EXACT IUPAC_NAME [IUPAC] +synonym: "C13H11N3" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C13H11N3/c14-10-3-1-8-5-9-2-4-11(15)7-13(9)16-12(8)6-10/h1-7H,14-15H2" RELATED InChI [ChEBI] +synonym: "Nc1ccc2cc3ccc(N)cc3nc2c1" RELATED SMILES [ChEBI] +synonym: "Proflavin" RELATED [ChemIDplus] +synonym: "proflavina" RELATED INN [ChemIDplus] +synonym: "proflavine" RELATED INN [WHO_MedNet] +synonym: "proflavine" RELATED INN [ChEBI] +synonym: "proflavinum" RELATED INN [ChemIDplus] +synonym: "WDVSHHCDHLJJJR-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:166050 "Beilstein" +xref: CAS:92-62-6 "NIST Chemistry WebBook" +xref: Drug_Central:2277 "DrugCentral" +xref: DrugBank:DB01123 +xref: KEGG:C11181 +xref: PDBeChem:PRL +xref: PMID:11960666 "Europe PMC" +xref: PMID:20178341 "Europe PMC" +xref: PMID:21435875 "Europe PMC" +xref: PMID:2242050 "Europe PMC" +xref: PMID:22555876 "Europe PMC" +xref: PMID:22978751 "Europe PMC" +xref: PMID:6987510 "Europe PMC" +xref: PMID:7009393 "Europe PMC" +xref: PMID:8579793 "Europe PMC" +xref: Reaxys:166050 "Reaxys" +xref: Wikipedia:Proflavine +is_a: CHEBI:51803 ! aminoacridines +relationship: has_role CHEBI:23240 ! chromophore +relationship: has_role CHEBI:24853 ! intercalator +relationship: has_role CHEBI:33282 ! antibacterial agent +relationship: has_role CHEBI:48218 ! antiseptic drug +relationship: has_role CHEBI:50903 ! carcinogenic agent +relationship: is_conjugate_base_of CHEBI:74711 ! 3,6-diaminoacridine(1+) + +[Term] +id: CHEBI:84561 +name: 2,4-dinitrophenol(1-) +namespace: chebi_ontology +def: "A phenolate anion obtained from 2,4-dinitrophenol. It is the major microspecies at pH 7.3 (according to Marvin v 6.2.0.)." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "183.004" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "183.09900" RELATED MASS [ChEBI] +synonym: "2,4-dinitrophenol" RELATED [UniProt] +synonym: "2,4-Dinitrophenol ion(1-)" RELATED [ChemIDplus] +synonym: "2,4-dinitrophenolate" EXACT IUPAC_NAME [IUPAC] +synonym: "[O-]c1ccc(cc1[N+]([O-])=O)[N+]([O-])=O" RELATED SMILES [ChEBI] +synonym: "C6H3N2O5" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H4N2O5/c9-6-2-1-4(7(10)11)3-5(6)8(12)13/h1-3,9H/p-1" RELATED InChI [ChEBI] +synonym: "UFBJCMHMOXMLKC-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +xref: CAS:20350-26-9 "ChemIDplus" +xref: MetaCyc:CPD-8179 "SUBMITTER" +xref: PMID:25281383 "Europe PMC" +xref: Reaxys:3552508 "Reaxys" +is_a: CHEBI:50525 ! phenolate anion +relationship: has_role CHEBI:76976 ! bacterial xenobiotic metabolite +relationship: is_conjugate_base_of CHEBI:42017 ! 2,4-dinitrophenol + +[Term] +id: CHEBI:8461 +name: promethazine +namespace: chebi_ontology +def: "A tertiary amine that is a substituted phenothiazine in which the ring nitrogen at position 10 is attached to C-3 of an N,N-dimethylpropan-2-amine moiety." [] +subset: 3_STAR +synonym: "(2-dimethylamino-2-methyl)ethyl-N-dibenzoparathiazine" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "10-(2-Dimethylaminopropyl)phenothiazine" RELATED [KEGG_COMPOUND] +synonym: "10-[2-(dimethylamino)propyl]phenothiazine" RELATED [NIST_Chemistry_WebBook] +synonym: "284.135" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "284.42018" RELATED MASS [ChEBI] +synonym: "C17H20N2S" RELATED FORMULA [KEGG_COMPOUND] +synonym: "CC(CN1c2ccccc2Sc2ccccc12)N(C)C" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C17H20N2S/c1-13(18(2)3)12-19-14-8-4-6-10-16(14)20-17-11-7-5-9-15(17)19/h4-11,13H,12H2,1-3H3" RELATED InChI [ChEBI] +synonym: "N,N,alpha-trimethyl-10H-phenothiazine-10-ethanamine" RELATED [NIST_Chemistry_WebBook] +synonym: "N,N-dimethyl-1-(10H-phenothiazin-10-yl)propan-2-amine" EXACT IUPAC_NAME [IUPAC] +synonym: "N-(2'-dimethylamino-2'-methyl)ethylphenothiazine" RELATED [ChemIDplus] +synonym: "proazamine" RELATED [ChemIDplus] +synonym: "prometazina" RELATED INN [ChEBI] +synonym: "Promethazine" EXACT [KEGG_COMPOUND] +synonym: "promethazine" RELATED INN [ChEBI] +synonym: "promethazinum" RELATED INN [ChEBI] +synonym: "PWWVAXIEGOYWEE-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:88554 "Beilstein" +xref: CAS:60-87-7 "KEGG COMPOUND" +xref: colombos:PROMETHAZIN +xref: colombos:PROMETHAZIN\:+UNKNOWN +xref: Drug_Central:2286 "DrugCentral" +xref: DrugBank:DB01069 +xref: Gmelin:337077 "Gmelin" +xref: HMDB:HMDB15202 +xref: KEGG:C07404 +xref: KEGG:D00494 +xref: LINCS:LSM-4440 +xref: Patent:US2530451 +xref: Patent:US2607773 +xref: Reaxys:88554 "Reaxys" +xref: Wikipedia:Promethazine +is_a: CHEBI:32876 ! tertiary amine +is_a: CHEBI:38093 ! phenothiazines +relationship: has_role CHEBI:35717 ! sedative +relationship: has_role CHEBI:36333 ! local anaesthetic +relationship: has_role CHEBI:37955 ! H1-receptor antagonist +relationship: has_role CHEBI:50857 ! anti-allergic agent +relationship: has_role CHEBI:50919 ! antiemetic +relationship: has_role CHEBI:59683 ! antipruritic drug +relationship: is_conjugate_base_of CHEBI:61214 ! promethazine(1+) + +[Term] +id: CHEBI:84688 +name: Fe(III)-complexed hydroxamate siderophore +namespace: chebi_ontology +def: "Any iron(III) hydroxamate in which the hydroxamate component is a siderophore." [] +subset: 3_STAR +synonym: "Fe(III)-complexed hydroxamate siderophores" RELATED [ChEBI] +synonym: "Fe(III)-hydroxamate siderophore" RELATED [ChEBI] +synonym: "Fe(III)-hydroxamate siderophores" RELATED [ChEBI] +synonym: "ferric-hydroxamate type siderophore" RELATED [ChEBI] +synonym: "ferric-hydroxamate type siderophores" RELATED [ChEBI] +is_a: CHEBI:28163 ! iron(III) hydroxamate +is_a: CHEBI:84734 ! Fe(III)-complexed siderophore + +[Term] +id: CHEBI:84700 +name: desferrioxamine B(3-) +namespace: chebi_ontology +def: "A hydroxamic acid anion resulting from the removal of a proton from each of the hydroxamic acid groups of desferrioxamine B" [] +subset: 3_STAR +synonym: "-3" RELATED CHARGE [ChEBI] +synonym: "557.330" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "557.66180" RELATED MASS [ChEBI] +synonym: "[acetyl(27-amino-11,22-dioxido-7,10,18,21-tetraoxo-6,11,17,22-tetraazaheptacos-1-yl)amino]oxidanide" EXACT IUPAC_NAME [IUPAC] +synonym: "C25H45N6O8" RELATED FORMULA [ChEBI] +synonym: "CC(=O)N([O-])CCCCCNC(=O)CCC(=O)N([O-])CCCCCNC(=O)CCC(=O)N([O-])CCCCCN" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C25H45N6O8/c1-21(32)29(37)18-9-3-6-16-27-22(33)12-14-25(36)31(39)20-10-4-7-17-28-23(34)11-13-24(35)30(38)19-8-2-5-15-26/h2-20,26H2,1H3,(H,27,33)(H,28,34)/q-3" RELATED InChI [ChEBI] +synonym: "ZTZKLNOYBOAHJQ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +is_a: CHEBI:24648 ! hydroxamic acid anion +relationship: has_role CHEBI:26672 ! siderophore +relationship: is_conjugate_base_of CHEBI:4356 ! desferrioxamine B + +[Term] +id: CHEBI:84734 +name: Fe(III)-complexed siderophore +namespace: chebi_ontology +def: "Any iron chelate that consists of a siderophore complexed to iron(III)" [] +subset: 3_STAR +synonym: "Fe(III)-complexed siderophores" RELATED [ChEBI] +synonym: "Fe(III)-siderophore" RELATED [ChEBI] +synonym: "Fe(III)-siderophores" RELATED [ChEBI] +synonym: "ferric siderophore" RELATED [ChEBI] +synonym: "ferric siderophores" RELATED [ChEBI] +is_a: CHEBI:5975 ! iron chelate + +[Term] +id: CHEBI:84735 +name: algal metabolite +namespace: chebi_ontology +def: "Any eukaryotic metabolite produced during a metabolic reaction in algae including unicellular organisms like chlorella and diatoms to multicellular organisms like giant kelps and brown algae." [] +subset: 3_STAR +synonym: "algal metabolites" RELATED [ChEBI] +is_a: CHEBI:75763 ! eukaryotic metabolite + +[Term] +id: CHEBI:85046 +name: skin lightening agent +namespace: chebi_ontology +def: "Any cosmetic used to lighten the colour of skin by reducing the concentration of melanin." [] +subset: 3_STAR +synonym: "melanogenesis inhibitor" RELATED [ChEBI] +synonym: "melanogenesis inhibitors" RELATED [ChEBI] +synonym: "skin bleaching agent" RELATED [ChEBI] +synonym: "skin bleaching agents" RELATED [ChEBI] +synonym: "skin depigmenting agent" RELATED [ChEBI] +synonym: "skin depigmenting agents" RELATED [ChEBI] +synonym: "skin lightening agents" RELATED [ChEBI] +synonym: "skin whitening agent" RELATED [ChEBI] +synonym: "skin whitening agents" RELATED [ChEBI] +xref: PMID:21265866 "Europe PMC" +xref: PMID:22132817 "Europe PMC" +xref: PMID:22314516 "Europe PMC" +xref: PMID:23891889 "Europe PMC" +xref: PMID:23974587 "Europe PMC" +xref: PMID:25535470 "Europe PMC" +xref: PMID:25574195 "Europe PMC" +xref: PMID:25643794 "Europe PMC" +xref: Wikipedia:Skin_whitening +is_a: CHEBI:64857 ! cosmetic + +[Term] +id: CHEBI:85184 +name: dihydroxycholanic acid +namespace: chebi_ontology +def: "Any member of the class of cholanic acids carrying two hydroxy substituents at unspecified positions." [] +subset: 3_STAR +synonym: "dihydroxycholanic acids" RELATED [ChEBI] +is_a: CHEBI:33822 ! organic hydroxy compound +is_a: CHEBI:36278 ! cholanic acids + +[Term] +id: CHEBI:85234 +name: human blood serum metabolite +namespace: chebi_ontology +def: "Any metabolite (endogenous or exogenous) found in human blood serum samples." [] +subset: 3_STAR +synonym: "human blood serum metabolites" RELATED [ChEBI] +is_a: CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:85638 +name: haloacetate(1-) +namespace: chebi_ontology +def: "A monocarboxylic acid anion resulting from the deprotonation of the carboxy group of a haloacetic acid." [] +subset: 3_STAR +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "58.03660" RELATED MASS [ChEBI] +synonym: "[O-]C(=O)C*" RELATED SMILES [ChEBI] +synonym: "a haloacetate" RELATED [UniProt] +synonym: "C2H2O2X" RELATED FORMULA [ChEBI] +synonym: "haloacetate (1-)" RELATED [ChEBI] +xref: MetaCyc:Haloacetates +is_a: CHEBI:35757 ! monocarboxylic acid anion +relationship: has_functional_parent CHEBI:30089 ! acetate +relationship: is_conjugate_base_of CHEBI:16277 ! haloacetic acid + +[Term] +id: CHEBI:86324 +name: quinolone antibiotic +namespace: chebi_ontology +def: "An organonitrogen heterocyclic antibiotic whose structure contains a quinolone or quinolone-related skeleton." [] +subset: 3_STAR +synonym: "quinolone antibiotics" RELATED [ChEBI] +is_a: CHEBI:25558 ! organonitrogen heterocyclic antibiotic + +[Term] +id: CHEBI:86327 +name: antifungal drug +namespace: chebi_ontology +def: "Any antifungal agent used to prevent or treat fungal infections in humans or animals." [] +subset: 3_STAR +synonym: "anti-fungal drug" RELATED [ChEBI] +synonym: "anti-fungal drugs" RELATED [ChEBI] +synonym: "anti-fungal medication" RELATED [ChEBI] +synonym: "anti-fungal medications" RELATED [ChEBI] +synonym: "antifungal drugs" RELATED [ChEBI] +synonym: "antifungal medication" RELATED [ChEBI] +synonym: "antifungal medications" RELATED [ChEBI] +synonym: "pharmaceutical fungicide" RELATED [ChEBI] +synonym: "pharmaceutical fungicides" RELATED [ChEBI] +xref: Wikipedia:Antifungal +is_a: CHEBI:35441 ! antiinfective agent +is_a: CHEBI:35718 ! antifungal agent + +[Term] +id: CHEBI:86328 +name: antifungal agrochemical +namespace: chebi_ontology +def: "Any substance used in acriculture, horticulture, forestry, etc. for its fungicidal properties." [] +subset: 3_STAR +synonym: "agrichemical fungicide" RELATED [ChEBI] +synonym: "agrichemical fungicides" RELATED [ChEBI] +synonym: "agrochemical fungicide" RELATED [ChEBI] +synonym: "agrochemical fungicides" RELATED [ChEBI] +synonym: "anti-fungal agrichemical" RELATED [ChEBI] +synonym: "anti-fungal agrichemicals" RELATED [ChEBI] +synonym: "anti-fungal agrochemical" RELATED [ChEBI] +synonym: "anti-fungal agrochemicals" RELATED [ChEBI] +synonym: "antifungal agrichemical" RELATED [ChEBI] +synonym: "antifungal agrichemicals" RELATED [ChEBI] +synonym: "antifungal agrochemicals" RELATED [ChEBI] +is_a: CHEBI:24127 ! fungicide +is_a: CHEBI:33286 ! agrochemical + +[Term] +id: CHEBI:86359 +name: L-gluconic acid +namespace: chebi_ontology +def: "A gluconic acid having L-configuration." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "196.058" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "196.15530" RELATED MASS [ChEBI] +synonym: "C6H12O7" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C6H12O7/c7-1-2(8)3(9)4(10)5(11)6(12)13/h2-5,7-11H,1H2,(H,12,13)/t2-,3-,4+,5-/m0/s1" RELATED InChI [ChEBI] +synonym: "L-gluconic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "OC[C@H](O)[C@H](O)[C@@H](O)[C@H](O)C(O)=O" RELATED SMILES [ChEBI] +synonym: "RGHNJXZEOKUKBD-KLVWXMOXSA-N" RELATED InChIKey [ChEBI] +is_a: CHEBI:24266 ! gluconic acid +relationship: is_enantiomer_of CHEBI:33198 ! D-gluconic acid + +[Term] +id: CHEBI:86383 +name: EC 5.3.3.* (intramolecular oxidase transposing C=C bonds) inhibitor +namespace: chebi_ontology +def: "An EC 5.3.* (intramolecular oxidoreductase) inhibitor that inhibits the action of any such enzyme that transposes C=C bonds (EC 5.3.3.*)." [] +subset: 3_STAR +synonym: "EC 5.3.3.* (intramolecular oxidase transposing C=C bonds) inhibitors" RELATED [ChEBI] +synonym: "EC 5.3.3.* inhibitor" RELATED [ChEBI] +synonym: "EC 5.3.3.* inhibitors" RELATED [ChEBI] +synonym: "intramolecular oxidase transposing C=C bonds inhibitor (EC 5.3.3.*) inhibitor" RELATED [ChEBI] +synonym: "intramolecular oxidase transposing C=C bonds inhibitor (EC 5.3.3.*) inhibitors" RELATED [ChEBI] +is_a: CHEBI:76694 ! EC 5.3.* (intramolecular oxidoreductase) inhibitor + +[Term] +id: CHEBI:86385 +name: EC 5.3.3.5 (cholestenol Delta-isomerase) inhibitor +namespace: chebi_ontology +subset: 1_STAR +synonym: "cholestenol Delta-isomerase (EC 5.3.3.5) inhibitor" RELATED [ChEBI] +synonym: "cholestenol Delta-isomerase (EC 5.3.3.5) inhibitors" RELATED [ChEBI] +synonym: "Delta(7)-cholestenol Delta(7)-Delta(8)-isomerase inhibitor" RELATED [ChEBI] +synonym: "Delta(7)-cholestenol Delta(7)-Delta(8)-isomerase inhibitors" RELATED [ChEBI] +synonym: "EC 5.3.3.5 (cholestenol Delta-isomerase) inhibitors" RELATED [ChEBI] +synonym: "EC 5.3.3.5 inhibitor" RELATED [ChEBI] +synonym: "EC 5.3.3.5 inhibitors" RELATED [ChEBI] +xref: Wikipedia:Cholestenol_Delta-isomerase +is_a: CHEBI:86383 ! EC 5.3.3.* (intramolecular oxidase transposing C=C bonds) inhibitor + +[Term] +id: CHEBI:86478 +name: antibiotic antifungal agent +namespace: chebi_ontology +def: "Heteroorganic entities that are microbial metabolites (or compounds derived from them) which have significant antifungal properties." [] +subset: 3_STAR +synonym: "antibiotic antifungal agents" RELATED [ChEBI] +is_a: CHEBI:33285 ! heteroorganic entity +relationship: has_role CHEBI:35718 ! antifungal agent + +[Term] +id: CHEBI:87113 +name: antibiotic antifungal drug +namespace: chebi_ontology +def: "Any antibiotic antifungal agent used to treat fungal infections in humans or animals." [] +subset: 3_STAR +synonym: "antibiotic antifungal drugs" RELATED [ChEBI] +is_a: CHEBI:86478 ! antibiotic antifungal agent +relationship: has_role CHEBI:86327 ! antifungal drug + +[Term] +id: CHEBI:87114 +name: antibiotic fungicide +namespace: chebi_ontology +def: "Any antibiotic antifungal agent that has been used as a fungicide." [] +subset: 3_STAR +synonym: "antibiotic fungicides" RELATED [ChEBI] +is_a: CHEBI:86478 ! antibiotic antifungal agent +relationship: has_role CHEBI:24127 ! fungicide + +[Term] +id: CHEBI:87211 +name: fluoroquinolone antibiotic +namespace: chebi_ontology +def: "An organonitrogen heterocyclic antibiotic containing a quinolone (or quinolone-like) moiety and which have a fluorine atom attached to the central ring system." [] +subset: 3_STAR +synonym: "fluoroquinolone antibiotics" RELATED [ChEBI] +xref: PMID:24947193 "Europe PMC" +xref: PMID:25226071 "Europe PMC" +xref: PMID:8386356 "Europe PMC" +is_a: CHEBI:25558 ! organonitrogen heterocyclic antibiotic +is_a: CHEBI:37143 ! organofluorine compound + +[Term] +id: CHEBI:87228 +name: sulfonamide antibiotic +namespace: chebi_ontology +def: "A class of sulfonamides whose members generally have bacteriostatic antibiotic properties." [] +subset: 3_STAR +synonym: "sulfonamide antibiotics" RELATED [ChEBI] +synonym: "sulfonamide antimicrobial agent" RELATED [ChEBI] +synonym: "sulfonamide antimicrobial agents" RELATED [ChEBI] +synonym: "sulphonamide antibiotic" RELATED [ChEBI] +synonym: "sulphonamide antibiotics" RELATED [ChEBI] +xref: PMID:24443047 "Europe PMC" +xref: PMID:24928456 "Europe PMC" +xref: PMID:25064257 "Europe PMC" +xref: PMID:25796473 "Europe PMC" +xref: PMID:26177406 "Europe PMC" +xref: Wikipedia:Sulfonamide_(medicine) +is_a: CHEBI:35358 ! sulfonamide +relationship: has_role CHEBI:33281 ! antimicrobial agent + +[Term] +id: CHEBI:87518 +name: ADP(2-) +namespace: chebi_ontology +def: "An organophosphate oxoanion obtained by deprotonation of two of the three diphosphate OH groups of adenosine 5'-diphosphate." [] +subset: 3_STAR +synonym: "-2" RELATED CHARGE [ChEBI] +synonym: "425.014" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "425.18630" RELATED MASS [ChEBI] +synonym: "5'-O-{[(hydroxyphosphinato)oxy]phosphinato}adenosine" EXACT IUPAC_NAME [IUPAC] +synonym: "C10H13N5O10P2" RELATED FORMULA [ChEBI] +synonym: "InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/p-2/t4-,6-,7-,10-/m1/s1" RELATED InChI [ChEBI] +synonym: "Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP(O)([O-])=O)[C@@H](O)[C@H]1O" RELATED SMILES [ChEBI] +synonym: "XTWYTFMLZFPYCI-KQYNXXCUSA-L" RELATED InChIKey [ChEBI] +xref: Reaxys:7558006 "Reaxys" +is_a: CHEBI:58945 ! organophosphate oxoanion +relationship: is_conjugate_acid_of CHEBI:456216 ! ADP(3-) +relationship: is_conjugate_base_of CHEBI:16761 ! ADP + +[Term] +id: CHEBI:87818 +name: sodium glycochenodeoxycholate +namespace: chebi_ontology +def: "A bile acid salt that is the sodium salt of glycochenodeoxycholic acid." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "471.296" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "471.606" RELATED MASS [ChEBI] +synonym: "AAYACJGHNRIFCT-YRJJIGPTSA-M" RELATED InChIKey [ChEBI] +synonym: "C1[C@@]2([C@]3(CC[C@]4([C@]([C@@]3([C@@H](C[C@@]2(C[C@@H](C1)O)[H])O)[H])(CC[C@@]4([C@@H](CCC(NCC([O-])=O)=O)C)[H])[H])C)[H])C.[Na+]" RELATED SMILES [ChEBI] +synonym: "C26H42NNaO5" RELATED FORMULA [ChEBI] +synonym: "glycochenodeoxycholic acid sodium salt" RELATED [ChEBI] +synonym: "InChI=1S/C26H43NO5.Na/c1-15(4-7-22(30)27-14-23(31)32)18-5-6-19-24-20(9-11-26(18,19)3)25(2)10-8-17(28)12-16(25)13-21(24)29;/h15-21,24,28-29H,4-14H2,1-3H3,(H,27,30)(H,31,32);/q;+1/p-1/t15-,16+,17-,18-,19+,20+,21-,24+,25+,26-;/m1./s1" RELATED InChI [ChEBI] +synonym: "NSC 681056" RELATED [ChemIDplus] +synonym: "sodium [(3alpha,7alpha-dihydroxy-24-oxo-5beta-cholan-24-yl)amino]acetate" EXACT IUPAC_NAME [IUPAC] +synonym: "Sodium glycylchenodeoxycholate" RELATED [ChemIDplus] +synonym: "sodium N-(3alpha,7alpha-dihydroxy-5beta-cholan-24-oyl)glycinate" EXACT IUPAC_NAME [IUPAC] +xref: CAS:16564-43-5 "ChemIDplus" +xref: DrugBank:DB02123 +xref: PMID:23078175 "Europe PMC" +xref: PMID:23206209 "Europe PMC" +xref: PMID:3742659 "Europe PMC" +xref: Reaxys:3847290 "Reaxys" +xref: Wikipedia:Glycochenodeoxycholic_acid +is_a: CHEBI:36277 ! bile acid salt +is_a: CHEBI:38700 ! organic sodium salt +relationship: has_part CHEBI:36252 ! glycochenodeoxycholate +relationship: has_role CHEBI:77746 ! human metabolite + +[Term] +id: CHEBI:88061 +name: polyamine +namespace: chebi_ontology +def: "Any organic amino compound that contains two or more amino groups." [] +subset: 3_STAR +synonym: "polyamines" RELATED [ChEBI] +xref: colombos:POLYAMINE +xref: Wikipedia:Polyamine +is_a: CHEBI:50047 ! organic amino compound + +[Term] +id: CHEBI:88184 +name: metal allergen +namespace: chebi_ontology +def: "Any metal which causes the onset of an allergic reaction." [] +subset: 3_STAR +synonym: "allergenic metal" RELATED [ChEBI] +synonym: "allergenic metals" RELATED [ChEBI] +synonym: "metal allergens" RELATED [ChEBI] +is_a: CHEBI:33521 ! metal atom +relationship: has_role CHEBI:50904 ! allergen + +[Term] +id: CHEBI:88186 +name: metal cation allergen +namespace: chebi_ontology +def: "Any metal cation which causes the onset of an allergic reaction." [] +subset: 3_STAR +synonym: "allergenic metal cation" RELATED [ChEBI] +synonym: "allergenic metal cations" RELATED [ChEBI] +synonym: "allergenic metal ion" RELATED [ChEBI] +synonym: "allergenic metal ions" RELATED [ChEBI] +synonym: "metal cation allergens" RELATED [ChEBI] +synonym: "metal ion allergen" RELATED [ChEBI] +synonym: "metal ion allergens" RELATED [ChEBI] +is_a: CHEBI:25213 ! metal cation +relationship: has_role CHEBI:50904 ! allergen + +[Term] +id: CHEBI:88187 +name: penicillin allergen +namespace: chebi_ontology +def: "Any penicillin which causes the onset of an allergic reaction." [] +subset: 3_STAR +synonym: "allergenic penicillin" RELATED [ChEBI] +synonym: "allergenic penicillin compound" RELATED [ChEBI] +synonym: "allergenic penicillin compounds" RELATED [ChEBI] +synonym: "allergenic penicillins" RELATED [ChEBI] +synonym: "penicillin allergens" RELATED [ChEBI] +is_a: CHEBI:17334 ! penicillin +relationship: has_role CHEBI:50904 ! allergen + +[Term] +id: CHEBI:88188 +name: drug allergen +namespace: chebi_ontology +def: "Any drug which causes the onset of an allergic reaction." [] +subset: 3_STAR +synonym: "allergenic drug" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug +is_a: CHEBI:50904 ! allergen + +[Term] +id: CHEBI:88212 +name: lead(II) chloride +namespace: chebi_ontology +def: "An inorganic chloride consisting of two chlorine atoms covalently bound to a central lead atom." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "277.914" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "278.123" RELATED MASS [ChEBI] +synonym: "[Pb](Cl)Cl" RELATED SMILES [ChEBI] +synonym: "Cl2Pb" RELATED FORMULA [ChEBI] +synonym: "dichloro-lambda(2)-plumbane" EXACT IUPAC_NAME [IUPAC] +synonym: "HWSZZLVAJGOAAY-UHFFFAOYSA-L" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/2ClH.Pb/h2*1H;/q;;+2/p-2" RELATED InChI [ChEBI] +synonym: "lead chloride" RELATED [ChEBI] +synonym: "Lead dichloride" RELATED [ChemIDplus] +synonym: "Lead(2+) chloride" RELATED [ChemIDplus] +synonym: "lead(2+) dichloride" EXACT IUPAC_NAME [IUPAC] +synonym: "PbCl2" RELATED [ChEBI] +synonym: "Plumbous chloride" RELATED [ChemIDplus] +xref: CAS:7758-95-4 "NIST Chemistry WebBook" +xref: PMID:11345460 "Europe PMC" +xref: Reaxys:3902843 "Reaxys" +xref: Reaxys:8128172 "Reaxys" +xref: Wikipedia:Lead(II)_chloride +is_a: CHEBI:36093 ! inorganic chloride +is_a: CHEBI:37185 ! lead coordination entity + +[Term] +id: CHEBI:88217 +name: N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine +namespace: chebi_ontology +def: "An N-substituted diamine that is ethylenediamine in which the four amino hydrogens are replaced by 2-pyridylmethyl groups." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "424.238" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "424.542" RELATED MASS [ChEBI] +synonym: "C(CN(CC1=NC=CC=C1)CC2=NC=CC=C2)N(CC3=NC=CC=C3)CC4=NC=CC=C4" RELATED SMILES [ChEBI] +synonym: "C26H28N6" RELATED FORMULA [ChEBI] +synonym: "CVRXLMUYFMERMJ-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C26H28N6/c1-5-13-27-23(9-1)19-31(20-24-10-2-6-14-28-24)17-18-32(21-25-11-3-7-15-29-25)22-26-12-4-8-16-30-26/h1-16H,17-22H2" RELATED InChI [ChEBI] +synonym: "N(1),N(1),N(2),N(2)-tetrakis[(pyridin-2-yl)methyl]ethane-1,2-diamine" EXACT IUPAC_NAME [IUPAC] +synonym: "TPEN" RELATED [ChemIDplus] +xref: CAS:16858-02-9 "ChemIDplus" +xref: colombos:TPEN +xref: LINCS:LSM-19976 +xref: PMID:22225878 "Europe PMC" +xref: PMID:25667569 "Europe PMC" +xref: PMID:25813624 "Europe PMC" +xref: PMID:25973665 "Europe PMC" +xref: PMID:26004891 "Europe PMC" +xref: PMID:26143360 "Europe PMC" +xref: PMID:26190227 "Europe PMC" +xref: Reaxys:4211982 "Reaxys" +is_a: CHEBI:26421 ! pyridines +is_a: CHEBI:50441 ! N-substituted diamine +is_a: CHEBI:50996 ! tertiary amino compound +relationship: has_functional_parent CHEBI:30347 ! ethylenediamine +relationship: has_role CHEBI:38161 ! chelator +relationship: has_role CHEBI:68495 ! apoptosis inducer + +[Term] +id: CHEBI:90318 +name: EC 6.4.1.1 (pyruvate carboxylase) inhibitor +namespace: chebi_ontology +def: "An EC 6.4.1.* (carboxylase) inhibitor that interferes with the action of pyruvate carboxylase (EC 6.4.1.1)." [] +subset: 3_STAR +synonym: "EC 6.4.1.1 (pyruvate carboxylase) inhibitors" RELATED [ChEBI] +synonym: "EC 6.4.1.1 inhibitor" RELATED [ChEBI] +synonym: "EC 6.4.1.1 inhibitors" RELATED [ChEBI] +synonym: "pyruvate carboxylase (EC 6.4.1.1) inhibitor" RELATED [ChEBI] +synonym: "pyruvate carboxylase (EC 6.4.1.1) inhibitors" RELATED [ChEBI] +synonym: "pyruvate carboxylase inhibitor" RELATED [ChEBI] +synonym: "pyruvate carboxylase inhibitors" RELATED [ChEBI] +synonym: "pyruvate:carbon-dioxide ligase (ADP-forming) inhibitor" RELATED [ChEBI] +synonym: "pyruvate:carbon-dioxide ligase (ADP-forming) inhibitors" RELATED [ChEBI] +synonym: "pyruvic carboxylase inhibitor" RELATED [ChEBI] +synonym: "pyruvic carboxylase inhibitors" RELATED [ChEBI] +xref: Wikipedia:Pyruvate_carboxylase +is_a: CHEBI:76824 ! EC 6.4.1.* (carboxylase) inhibitor + +[Term] +id: CHEBI:90333 +name: (E)-3-(indol-2-yl)acrylic acid +namespace: chebi_ontology +def: "An alpha,beta-unsaturated monocarboxylic acid that is acrylic acid in which one of the hydrogens at position 3 is replaced by an indol-2-yl group." [] +subset: 3_STAR +synonym: "(2E)-3-(1H-indol-2-yl)prop-2-enoic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "187.063" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "187.195" RELATED MASS [ChEBI] +synonym: "2-indoleacrylic acid" RELATED [ChEBI] +synonym: "2-indolylacrylic acid" RELATED [ChEBI] +synonym: "3-(2-indolyl)acrylic acid" RELATED [ChEBI] +synonym: "C11H9NO2" RELATED FORMULA [ChEBI] +synonym: "C=1C=CC2=C(C1)C=C(N2)/C=C/C(=O)O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C11H9NO2/c13-11(14)6-5-9-7-8-3-1-2-4-10(8)12-9/h1-7,12H,(H,13,14)/b6-5+" RELATED InChI [ChEBI] +synonym: "indole-2-acrylic acid" RELATED [ChEBI] +synonym: "indoleacrylic acid" RELATED [ChEBI] +synonym: "SXOUIMVOMIGLHO-AATRIKPKSA-N" RELATED InChIKey [ChEBI] +synonym: "trans-2-indoleacrylic acid" RELATED [ChEBI] +xref: HMDB:HMDB00734 +xref: Reaxys:4397595 "Reaxys" +is_a: CHEBI:24828 ! indoles +is_a: CHEBI:79020 ! alpha,beta-unsaturated monocarboxylic acid +relationship: has_functional_parent CHEBI:18308 ! acrylic acid + +[Term] +id: CHEBI:90710 +name: receptor modulator +namespace: chebi_ontology +def: "A drug that acts as an antagonist, agonist, reverse agonist, or in some other fashion when interacting with cellular receptors." [] +subset: 3_STAR +synonym: "receptor modulators" RELATED [ChEBI] +is_a: CHEBI:23888 ! drug + +[Term] +id: CHEBI:90749 +name: antidote to cyanide poisoning +namespace: chebi_ontology +def: "A role borne by a molecule that acts to counteract or neutralize the deleterious effects of cyanide." [] +subset: 3_STAR +is_a: CHEBI:50247 ! antidote + +[Term] +id: CHEBI:91007 +name: aromatic carboxylate +namespace: chebi_ontology +def: "A carboxylic acic anion obtained by deprotonation of the carboxy group of any aromatic carboxylic acid. Major species at pH 7.3." [] +subset: 3_STAR +synonym: "*C([O-])=O" RELATED SMILES [ChEBI] +synonym: "-1" RELATED CHARGE [ChEBI] +synonym: "43.990" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "44.010" RELATED MASS [ChEBI] +synonym: "an aromatic carboxylate" RELATED [UniProt] +synonym: "CO2R" RELATED FORMULA [ChEBI] +is_a: CHEBI:29067 ! carboxylic acid anion +relationship: is_conjugate_base_of CHEBI:33859 ! aromatic carboxylic acid + +[Term] +id: CHEBI:91139 +name: elastin-laminin receptor agonist +namespace: chebi_ontology +def: "An agonist that selectively binds to and activates elastin-laminin receptors." [] +subset: 3_STAR +synonym: "elastin-laminin receptor agonists" RELATED [ChEBI] +synonym: "ELR agonist" RELATED [ChEBI] +synonym: "ELR agonists" RELATED [ChEBI] +xref: PMID:9856283 "Europe PMC" +is_a: CHEBI:48705 ! agonist + +[Term] +id: CHEBI:9177 +name: sodium deoxycholate +namespace: chebi_ontology +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "414.275" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "414.275" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "414.55383" RELATED MASS [ChEBI] +synonym: "[Na+].[H][C@]12CC[C@@]3([H])[C@]4([H])CC[C@]([H])([C@H](C)CCC([O-])=O)[C@@]4(C)[C@@H](O)C[C@]3([H])[C@@]1(C)CC[C@@H](O)C2" RELATED SMILES [ChEBI] +synonym: "C24H39NaO4" RELATED FORMULA [ChEBI] +synonym: "C24H39O4.Na" RELATED FORMULA [KEGG_COMPOUND] +synonym: "deoxycholate sodium" RELATED [ChemIDplus] +synonym: "deoxycholic acid sodium salt" RELATED [ChemIDplus] +synonym: "desoxycholate sodium" RELATED [ChemIDplus] +synonym: "FHHPUSMSKHSNKW-SMOYURAASA-M" RELATED InChIKey [ChEBI] +synonym: "InChI=1S/C24H40O4.Na/c1-14(4-9-22(27)28)18-7-8-19-17-6-5-15-12-16(25)10-11-23(15,2)20(17)13-21(26)24(18,19)3;/h14-21,25-26H,4-13H2,1-3H3,(H,27,28);/q;+1/p-1/t14-,15-,16-,17+,18-,19+,20+,21+,23+,24-;/m1./s1" RELATED InChI [ChEBI] +synonym: "sodium 3alpha,12alpha-dihydroxy-5beta-cholan-24-oate" EXACT IUPAC_NAME [IUPAC] +synonym: "sodium 7-deoxycholate" RELATED [ChemIDplus] +synonym: "Sodium deoxycholate" EXACT [KEGG_COMPOUND] +synonym: "sodium deoxycholate" EXACT [UniProt] +synonym: "sodium desoxycholate" RELATED [ChemIDplus] +xref: Beilstein:3643164 "Beilstein" +xref: CAS:302-95-4 "ChemIDplus" +xref: Gmelin:1775786 "Gmelin" +xref: KEGG:C11171 +is_a: CHEBI:36277 ! bile acid salt +relationship: has_part CHEBI:23614 ! deoxycholate + +[Term] +id: CHEBI:9180 +name: Sodium salicylate +namespace: chebi_ontology +subset: 2_STAR +synonym: "0" RELATED CHARGE [KEGG_COMPOUND] +synonym: "160.014" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "160.103" RELATED MASS [KEGG_COMPOUND] +synonym: "[Na+].Oc1ccccc1C([O-])=O" RELATED SMILES [ChEBI] +synonym: "ABBQHOQBGMUPJH-UHFFFAOYSA-M" RELATED InChIKey [ChEBI] +synonym: "C7H5O3.Na" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C7H6O3.Na/c8-6-4-2-1-3-5(6)7(9)10;/h1-4,8H,(H,9,10);/q;+1/p-1" RELATED InChI [ChEBI] +synonym: "Sodium salicylate" EXACT [KEGG_COMPOUND] +xref: CAS:54-21-7 "KEGG COMPOUND" +xref: KEGG:C07587 +xref: KEGG:D00566 +is_a: CHEBI:50860 ! organic molecular entity + +[Term] +id: CHEBI:9215 +name: spectinomycin +namespace: chebi_ontology +alt_id: CHEBI:45551 +def: "An organic heterotricyclic antibiotic that is active against gram-negative bacteria and used (as its dihydrochloride pentahydrate) to treat gonorrhea. It is produced by the bacterium Streptomyces spectabilis." [] +subset: 3_STAR +synonym: "(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)decahydro-4H-pyrano[2,3-b][1,4]benzodioxin-4-one" EXACT IUPAC_NAME [IUPAC] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "332.158" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "332.34960" RELATED MASS [ChEBI] +synonym: "Antibiotic 2233wp" RELATED [ChemIDplus] +synonym: "C14H24N2O7" RELATED FORMULA [ChEBI] +synonym: "CN[C@@H]1[C@H](O)[C@H](NC)[C@H]2O[C@]3(O)[C@@H](O[C@H](C)CC3=O)O[C@@H]2[C@H]1O" RELATED SMILES [ChEBI] +synonym: "espectinomicina" RELATED INN [DrugBank] +synonym: "InChI=1S/C14H24N2O7/c1-5-4-6(17)14(20)13(21-5)22-12-10(19)7(15-2)9(18)8(16-3)11(12)23-14/h5,7-13,15-16,18-20H,4H2,1-3H3/t5-,7-,8+,9+,10+,11-,12-,13+,14+/m1/s1" RELATED InChI [ChEBI] +synonym: "spectinomycin" RELATED INN [KEGG_DRUG] +synonym: "spectinomycine" RELATED INN [DrugBank] +synonym: "spectinomycinum" RELATED INN [DrugBank] +synonym: "UNFWWIHTNXNPBV-WXKVUWSESA-N" RELATED InChIKey [ChEBI] +xref: CAS:1695-77-8 "ChemIDplus" +xref: colombos:SPECTINOMYCIN +xref: colombos:SPECTINOMYCIN\:+UNKNOWN +xref: Drug_Central:2468 "DrugCentral" +xref: DrugBank:DB00919 +xref: HMDB:HMDB15055 +xref: KEGG:C02078 +xref: KEGG:D08526 +xref: LINCS:LSM-5298 +xref: Patent:US4203903 +xref: Patent:WO2005041984 +xref: PDBeChem:SCM +xref: PMID:23183436 "Europe PMC" +xref: PMID:23847609 "Europe PMC" +xref: PMID:24020122 "Europe PMC" +xref: PMID:24402501 "Europe PMC" +xref: PMID:24503209 "Europe PMC" +xref: Reaxys:2171701 "Reaxys" +xref: Wikipedia:Spectinomycin +is_a: CHEBI:26979 ! organic heterotricyclic compound +is_a: CHEBI:3992 ! cyclic ketone +is_a: CHEBI:50995 ! secondary amino compound +is_a: CHEBI:59770 ! cyclic acetal +is_a: CHEBI:59780 ! cyclic hemiketal +relationship: has_role CHEBI:36047 ! antibacterial drug +relationship: has_role CHEBI:76969 ! bacterial metabolite +relationship: is_conjugate_base_of CHEBI:77315 ! spectinomycin(2+) + +[Term] +id: CHEBI:9473 +name: tetrachlorosalicylanilide +namespace: chebi_ontology +def: "A salicylanilide derivative where the hydrogens at positions 2, 3, 4 and 5 are substituted by chlorine." [] +subset: 3_STAR +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "2,3,4,5-tetrachloro-6-hydroxy-N-phenylbenzamide" EXACT IUPAC_NAME [IUPAC] +synonym: "348.923" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "351.01200" RELATED MASS [ChEBI] +synonym: "BDOBMVIEWHZYDL-UHFFFAOYSA-N" RELATED InChIKey [ChEBI] +synonym: "C13H7Cl4NO2" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C13H7Cl4NO2/c14-8-7(12(19)11(17)10(16)9(8)15)13(20)18-6-4-2-1-3-5-6/h1-5,19H,(H,18,20)" RELATED InChI [ChEBI] +synonym: "Oc1c(Cl)c(Cl)c(Cl)c(Cl)c1C(=O)Nc1ccccc1" RELATED SMILES [ChEBI] +synonym: "Tetrachlorosalicylanilide" EXACT [KEGG_COMPOUND] +xref: CAS:7426-07-5 "ChemIDplus" +xref: KEGG:C11274 +xref: PMID:1148111 "Europe PMC" +xref: PMID:13926142 "Europe PMC" +xref: PMID:14161221 "Europe PMC" +xref: PMID:2679409 "Europe PMC" +xref: PMID:3432140 "Europe PMC" +xref: PMID:4870835 "Europe PMC" +xref: PMID:5708356 "Europe PMC" +xref: PMID:6049391 "Europe PMC" +xref: PMID:7089070 "Europe PMC" +is_a: CHEBI:53468 ! salicylanilides + +[Term] +id: CHEBI:9907 +name: ursodeoxycholic acid +namespace: chebi_ontology +def: "A bile acid found in the bile of bears (Ursidae) as a conjugate with taurine. Used therapeutically, it prevents the synthesis and absorption of cholesterol and can lead to the dissolution of gallstones." [] +subset: 3_STAR +synonym: "(3alpha,5beta,7beta)-3,7-dihydroxycholan-24-oic acid" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "392.293" RELATED MONOISOTOPIC_MASS [KEGG_COMPOUND] +synonym: "392.57200" RELATED MASS [ChEBI] +synonym: "3alpha,7beta-Dihydroxy-5beta-cholan-24-oic acid" RELATED [KEGG_COMPOUND] +synonym: "3alpha,7beta-dihydroxy-5beta-cholan-24-oic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "[H][C@@]12C[C@H](O)CC[C@]1(C)[C@@]1([H])CC[C@]3(C)[C@]([H])(CC[C@@]3([H])[C@]1([H])[C@@H](O)C2)[C@H](C)CCC(O)=O" RELATED SMILES [ChEBI] +synonym: "Actigall" RELATED [ChemIDplus] +synonym: "C24H40O4" RELATED FORMULA [KEGG_COMPOUND] +synonym: "InChI=1S/C24H40O4/c1-14(4-7-21(27)28)17-5-6-18-22-19(9-11-24(17,18)3)23(2)10-8-16(25)12-15(23)13-20(22)26/h14-20,22,25-26H,4-13H2,1-3H3,(H,27,28)/t14-,15+,16-,17-,18+,19+,20+,22+,23+,24-/m1/s1" RELATED InChI [ChEBI] +synonym: "RUDATBOHQWOJDD-UZVSRGJWSA-N" RELATED InChIKey [ChEBI] +synonym: "Ursodeoxycholate" RELATED [KEGG_COMPOUND] +synonym: "Ursodeoxycholic acid" EXACT [KEGG_COMPOUND] +synonym: "Ursodiol" RELATED [KEGG_COMPOUND] +xref: Beilstein:3219888 "ChemIDplus" +xref: CAS:128-13-2 "KEGG COMPOUND" +xref: Drug_Central:2797 "DrugCentral" +xref: DrugBank:DB01586 +xref: HMDB:HMDB00946 +xref: KEGG:C07880 +xref: KEGG:D00734 +xref: LINCS:LSM-6555 +xref: LIPID_MAPS_instance:LMST04010033 "LIPID MAPS" +xref: PMID:14989050 "Europe PMC" +xref: PMID:17489439 "Europe PMC" +xref: PMID:24816727 "Europe PMC" +xref: Reaxys:3219888 "Reaxys" +xref: Wikipedia:Ursodiol +is_a: CHEBI:131620 ! C24-steroid +is_a: CHEBI:23775 ! dihydroxy-5beta-cholanic acid +is_a: CHEBI:3098 ! bile acid +relationship: has_role CHEBI:75771 ! mouse metabolite +relationship: has_role CHEBI:77746 ! human metabolite +relationship: is_conjugate_acid_of CHEBI:78604 ! ursodeoxycholate + +[Term] +id: CHEBI:9908 +name: ursolic acid +namespace: chebi_ontology +def: "A pentacyclic triterpenoid that is urs-12-en-28-oic acid substituted by a beta-hydroxy group at position 3." [] +subset: 3_STAR +synonym: "(3beta)-3-hydroxyurs-12-en-28-oic acid" RELATED [ChemIDplus] +synonym: "0" RELATED CHARGE [ChEBI] +synonym: "3beta-hydroxyurs-12-en-28-oic acid" EXACT IUPAC_NAME [IUPAC] +synonym: "456.360" RELATED MONOISOTOPIC_MASS [ChEBI] +synonym: "456.70030" RELATED MASS [ChEBI] +synonym: "C30H48O3" RELATED FORMULA [ChEBI] +synonym: "C[C@@H]1CC[C@@]2(CC[C@]3(C)C(=CC[C@@H]4[C@@]5(C)CC[C@H](O)C(C)(C)[C@@H]5CC[C@@]34C)[C@@H]2[C@H]1C)C(O)=O" RELATED SMILES [ChEBI] +synonym: "InChI=1S/C30H48O3/c1-18-10-15-30(25(32)33)17-16-28(6)20(24(30)19(18)2)8-9-22-27(5)13-12-23(31)26(3,4)21(27)11-14-29(22,28)7/h8,18-19,21-24,31H,9-17H2,1-7H3,(H,32,33)/t18-,19+,21+,22-,23+,24+,27+,28-,29-,30+/m1/s1" RELATED InChI [ChEBI] +synonym: "malol" RELATED [ChemIDplus] +synonym: "prunol" RELATED [ChemIDplus] +synonym: "Ursolic acid" EXACT [KEGG_COMPOUND] +synonym: "urson" RELATED [ChemIDplus] +synonym: "WCGUUGGRBIKTOS-GPOJBZKASA-N" RELATED InChIKey [ChEBI] +xref: Beilstein:2228563 "Beilstein" +xref: CAS:77-52-1 "KEGG COMPOUND" +xref: KEGG:C08988 +xref: KNApSAcK:C00003558 +xref: PMID:17516089 "Europe PMC" +xref: Reaxys:2228563 "Reaxys" +is_a: CHEBI:25872 ! pentacyclic triterpenoid +is_a: CHEBI:35868 ! hydroxy monocarboxylic acid +relationship: has_parent_hydride CHEBI:35711 ! ursane +relationship: has_role CHEBI:76924 ! plant metabolite + +[Term] +id: CL:0000066 +name: epithelial cell +namespace: cell +def: "A cell that is usually found in a two-dimensional sheet with a free surface. The cell has a cytoskeleton that allows for tight cell to cell contact and for cell polarity where apical part is directed towards the lumen and the basal part to the basal lamina." [FB:ma, GOC:tfm, MESH:A11.436] +synonym: "epitheliocyte" EXACT [] +xref: BTO:0000414 +xref: CALOHA:TS-2026 +xref: CARO:0000077 +xref: FBbt:00000124 +xref: FMA:66768 +xref: WBbt:0003672 +is_a: UBERON:0000479 ! tissue + +[Term] +id: CLO:0003707 +name: HEp-2 cell +xref: colombos:HEp-2 +xref: colombos:HEp-2\:+1 +is_a: CL:0000066 ! epithelial cell +property_value: IAO:0000118 "HEp-2" xsd:string +property_value: seeAlso "ATCC: CCL-23" xsd:string + +[Term] +id: GO:0008150 +name: biological_process +namespace: biological_process +alt_id: GO:0000004 +alt_id: GO:0007582 +def: "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end." [] +comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_pombe +subset: goslim_yeast +subset: gosubset_prok +synonym: "biological process" EXACT [] +synonym: "physiological process" EXACT [] +xref: Wikipedia:Biological_process +is_a: BFO:0000015 ! process +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + +[Term] +id: GO:0008152 +name: metabolic process +namespace: biological_process +def: "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." [] +comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. +subset: gocheck_do_not_manually_annotate +subset: goslim_chembl +subset: goslim_pir +subset: goslim_plant +subset: gosubset_prok +synonym: "metabolic process resulting in cell growth" NARROW [] +synonym: "metabolism" EXACT [] +synonym: "metabolism resulting in cell growth" NARROW [] +xref: Wikipedia:Metabolism +is_a: GO:0008150 ! biological_process +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + +[Term] +id: GO:0044699 +name: single-organism process +namespace: biological_process +def: "A biological process that involves only one organism." [] +synonym: "single organism process" EXACT [] +is_a: GO:0008150 ! biological_process +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl +created_by: janelomax +creation_date: 2012-09-19T15:05:24Z + +[Term] +id: GO:0044710 +name: single-organism metabolic process +namespace: biological_process +def: "A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism." [] +is_a: GO:0008152 ! metabolic process +is_a: GO:0044699 ! single-organism process +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl +created_by: janelomax +creation_date: 2012-10-17T15:46:40Z + +[Term] +id: MCO:00000000 +name: mco + +[Term] +id: MCO:0000013 +name: equipment and supplies +is_a: BFO:0000030 ! object + +[Term] +id: MCO:0000014 +name: natural medium +def: "a liquid or solid substance or entity that naturally exists, where microorganims are able to grow." [] +is_a: OBI:0000079 ! culture medium + +[Term] +id: MCO:0000015 +name: artificial medium +def: "a culture medium made specifically for the grow, storage, isolation, identification or transportation of microorganisms." [] +is_a: OBI:0000079 ! culture medium + +[Term] +id: MCO:0000016 +name: poor medium +def: "minimal salts plus glycerol and fumarate" [] +is_a: MICRO:0000067 ! microbiological culture medium +property_value: IAO:0000119 "PMID: 9382703" xsd:string + +[Term] +id: MCO:0000017 +name: conditioned culture medium +is_a: MICRO:0000067 ! microbiological culture medium +property_value: IAO:0000119 http://purl.bioontology.org/ontology/MESH/D017077 xsd:string +property_value: MCO:0000190 "conditioned medium" xsd:string +property_value: MCO:0000851 "Culture media containing biologically active components obtained from previously cultured cells or tissues that have released into the media substances affecting certain cell functions (e.g., growth, lysis)." xsd:string + +[Term] +id: MCO:0000018 +name: LE392 conditioned medium +def: "Conditioned medium containing biologically active components obtained from E. coli strain LE392" [] +is_a: MCO:0000017 ! conditioned culture medium +property_value: IAO:0000119 "PMID: 8552633" xsd:string + +[Term] +id: MCO:0000020 +name: N-C- medium +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000866 NCBITaxon:83333 ! treatment Escherichia coli K-12 +property_value: IAO:0000119 "PMID: 201606" xsd:string +property_value: MCO:0000094 "K2S04, 1.0g\nK2HP04Β·3H20, 17.7g\nKH2PO4, 4.7g\nMgSO4Β·7H20, 0.1g\nper liter of distiled water" xsd:string +property_value: MCO:0000118 "PMID: 201606" xsd:string +property_value: MCO:0000851 "artificial medium without a source of carbon or nitrogen" xsd:string + +[Term] +id: MCO:0000021 +name: M56 medium +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000866 NCBITaxon:83333 ! treatment Escherichia coli K-12 +property_value: MCO:0000094 "KH2PO4, 2.7 g\nNa2HPO4, 8.2 g\nCaCl2, 50 ΞΌg\n(NH4)2SO4, 1.0 g\nFeSO4 7H2O, 25 ΞΌl of a 1.0% solution \nMgSO4-7H2O, 0.1 g\nglucose, 4.0 g\nper liter" xsd:string +property_value: MCO:0000118 "PMCID: PMC393752" xsd:string +property_value: MCO:0000190 "M56" xsd:string + +[Term] +id: MCO:0000023 +name: minimal essential medium +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000866 NCBITaxon:83333 ! treatment Escherichia coli K-12 +property_value: IAO:0000119 "PMID: 19293938\nhttp://www.sigmaaldrich.com/life-science/cell-culture/classical-media-salts/mem-media.html" xsd:string +property_value: MCO:0000190 "MEM" xsd:string +property_value: MCO:0000851 "Minimum Essential Medium (MEM), developed by Harry Eagle, is one of the most widely used of all synthetic cell culture media." xsd:string + +[Term] +id: MCO:0000024 +name: MOPS minimal medium +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000866 NCBITaxon:83333 ! treatment Escherichia coli K-12 +property_value: MCO:0000094 "Ξ²-D-glucopyranose 20 g/l\n3-(N-morpholino)propanesulfonate 40 mM\nammonium chloride 9.5 mM\nammonium heptamolybdate 3 nM\nborate 400 nM\ncalcium chloride 0.5 Β΅M \ncobalt chloride 30.0 nM\ncopper sulfate 10 nM\ndipotassium phosphate 1.32 mM\niron sulfate 10 Β΅M\nmanganese chloride 80 nM\nMgCl2 528 Β΅M\npotassium sulfate 276 Β΅M\nsodium chloride 50 mM\ntricine 4 mM pH Buffer\nzinc sulfate 10 nM" xsd:string +property_value: MCO:0000190 "morpholinepropanesulfonic acid (MOPS) minimal medium" xsd:string +property_value: MCO:0000382 "The goals for this medium were to find a convenient and well defined composition that allowed varying all of the elements independently to facilitate isotopic labelling. This required using much less phosphate than in older media, which served roles of pH buffering and chelation of metals like Fe2+. For buffering, MOPS was used instead, with some Tricine added to help chelate Fe2+.\n\nE. coli can use MOPS as a sulfur source if not other sulfur source is added. However, sulfate easily outcompetes MOPS if both are present.\n\nTo increase ionic strength and thus optimize the growth rate, NaCl was added. However, it is probably the case that KCl would work just as well, which would allow completely eliminating Na+ from this medium." xsd:string + +[Term] +id: MCO:0000027 +name: T-broth +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000867 NCBITaxon:83333 ! experimental process Escherichia coli K-12 +property_value: MCO:0000094 "tryptone, 1% \nbiotin, 25 nM" xsd:string + +[Term] +id: MCO:0000028 +name: TGYEP +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000867 NCBITaxon:83333 ! experimental process Escherichia coli K-12 +property_value: MCO:0000094 "glucose-nutrient agar plates \ncontaining per litre: \nglucose, 5 g\ntryptone, 10 g\nyeast extract, 5 g\nK2HPO4, 12 g\nKH2PO4, 3 g\nagar, 15 g" xsd:string + +[Term] +id: MCO:0000030 +name: LB medium, Lennox +is_a: MICRO:0000562 ! LB medium +property_value: MCO:0000094 "10g/L tryptone\n5g/L yeast extract\n5g/L NaCl" xsd:string + +[Term] +id: MCO:0000031 +name: LB medium, Luria +is_a: MICRO:0000562 ! LB medium +property_value: MCO:0000094 "10g/L tryptone\n5g/L yeast extract\n0.5g/L NaCl" xsd:string + +[Term] +id: MCO:0000032 +name: LB medium, Miller +is_a: MICRO:0000562 ! LB medium +property_value: MCO:0000094 "10g/L tryptone\n5g/L yeast extract\n10g/L NaCl" xsd:string + +[Term] +id: MCO:0000033 +name: penassay broth +xref: colombos:MEDIUM.PENASSAY +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000867 NCBITaxon:83333 ! experimental process Escherichia coli K-12 +property_value: IAO:0000119 http://openwetware.org/wiki/Rao:Penassay xsd:string +property_value: MCO:0000094 "Per 1L of H2O:\nPeptone: 10 g\nYeast Extract: 1.5 g\nBeef Extract: 1.5 g\nSodium Chloride: 3.5 g\nGlucose: 1.0 g\nPotassium phosphate, dibasic: 3.68 g\nPotassium phosphate, monobasic: 1.32 g\npH to 7" xsd:string +property_value: MCO:0000851 "Penassay broth is an artificial medium typically used in the growth of Bacillus subtilis and related organisms." xsd:string + +[Term] +id: MCO:0000034 +name: L broth +is_a: MCO:0000030 ! LB medium, Lennox +disjoint_from: MCO:0000035 ! L agar +property_value: MCO:0000094 "tryptone 10 g\nyeast extract 5 g\nNaCl 5 g\nglucose 1 g\nper liter of water.\nThe pH is adjusted by adding approximately 1.7 ml of NaOH prior to autoclaving." xsd:string +property_value: MCO:0000190 "L-broth" xsd:string +property_value: MCO:0000851 "Liquid LB medium, Lennox supplemented with glucose" xsd:string + +[Term] +id: MCO:0000035 +name: L agar +is_a: MCO:0000030 ! LB medium, Lennox +property_value: MCO:0000094 "tryptone 10 g\nyeast extract 5 g\nNaCl 5 g\nglucose 1 g\nagar 1.5 %\nper liter of water. \nsupplemented with CaCl2\nThe pH is adjusted by adding approximately 1.7 ml of NaOH prior to autoclaving" xsd:string + +[Term] +id: MCO:0000036 +name: LB broth +is_a: MCO:0000032 ! LB medium, Miller +disjoint_from: MCO:0000037 ! Luria broth +property_value: MCO:0000094 "tryptone 10 g\nyeast extract 5 g \nNaCl 10 g\nglucose 1 g\nper liter of water. \nThe pH is adjusted to 7.0 by adding approximately 1.7 ml of N NaOH." xsd:string +property_value: MCO:0000851 "Liquid LB medium, Miller supplemented with glucose" xsd:string + +[Term] +id: MCO:0000037 +name: Luria broth +is_a: MCO:0000032 ! LB medium, Miller +property_value: MCO:0000094 "tryptone 10 g\nyeast extract 5 g\nNaCl 10 g\n950 ml of deionized H20" xsd:string +property_value: MCO:0000851 "Liquid LB medium, Miller" xsd:string + +[Term] +id: MCO:0000041 +name: overexpression mutant +xref: colombos:GraL.OVEREXPRESSION +is_a: NCIT:C25360 ! mutant +property_value: MCO:0000851 "a mutant in which a gene ore genes are expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000042 +name: knockout mutant +is_a: NCIT:C25360 ! mutant +property_value: MCO:0000190 "gene deletion" xsd:string +property_value: MCO:0000851 "a mutant in which the function of a target gene has been disrupted within its normal biological context. Utilized to examine the involvement of a gene in a complex biological process." xsd:string + +[Term] +id: MCO:0000043 +name: insertion mutant +is_a: NCIT:C25360 ! mutant +property_value: IAO:0000119 "Adapted from:\nhttp://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C19295" xsd:string +property_value: MCO:0000190 "Insertion" xsd:string +property_value: MCO:0000190 "Insertion Mutation Abnormality" xsd:string +property_value: MCO:0000190 "Mutation, Insertion" xsd:string +property_value: MCO:0000851 "a mutant genotype in which one or more extra nucleotides have been added into the DNA. Insertions may be reversible, particulary if caused by transposable elements. They may alter the reading frame of a gene, or may cause large scale additions of genomic DNA." xsd:string + +[Term] +id: MCO:0000044 +name: lysogenic mutant +is_a: MCO:0000043 ! insertion mutant +disjoint_from: MCO:0000045 ! transposable element mutant +property_value: IAO:0000119 "an insertion mutant in which a phage is inserted in the chromosome" xsd:string +property_value: MCO:0000190 "infection by phage" xsd:string + +[Term] +id: MCO:0000045 +name: transposable element mutant +is_a: MCO:0000043 ! insertion mutant +property_value: IAO:0000119 "adapted from \nISBN 0 87893 608 4" xsd:string +property_value: IAO:0000119 "an insertion mutant in which a sequence has been inserted in the chromosome by means of a transposable element. Transposable elements include insertion sequences (IS), transposons (Tn), invertible elements, and the prophage of a particular virus called Mu." xsd:string + +[Term] +id: MCO:0000046 +name: knockin mutant +is_a: MCO:0000043 ! insertion mutant +property_value: IAO:0000119 "adapted from:\nhttp://www.bioassayontology.org/bao#BAO_0002432" xsd:string +property_value: MCO:0000851 "an insertion mutant in which a protein coding cDNA sequence has been inserted at a particular locus in an organism's chromosome. \n\nThe difference between knock-in technology and transgenic technology is that a knock-in involves a gene inserted into a specific locus, and is a \"targeted\" insertion." xsd:string + +[Term] +id: MCO:0000047 +name: Ξ»(soxR) +is_a: MCO:0000044 ! lysogenic mutant +disjoint_from: MCO:0000048 ! Ξ»(truncated soxR) +property_value: MCO:0000851 "a lysogenic mutant that carries phage Ξ» containing soxR gene" xsd:string + +[Term] +id: MCO:0000048 +name: Ξ»(truncated soxR) +is_a: MCO:0000044 ! lysogenic mutant +property_value: MCO:0000851 "a lysogenic mutant that carries phage Ξ» containing truncated version of soxR gene" xsd:string + +[Term] +id: MCO:0000049 +name: Ξ¦(soxR) +is_a: MCO:0000044 ! lysogenic mutant +property_value: MCO:0000851 "a lysogenic mutant that carries phage Ξ¦ containing soxR gene" xsd:string + +[Term] +id: MCO:0000050 +name: knockdown mutant +is_a: NCIT:C25360 ! mutant +property_value: IAO:0000119 "adapted from:\nhttp://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C74927" xsd:string +property_value: MCO:0000851 "a mutant in which the expression of a gene has been reduced without eliminating it entirely. The reduced expression may be permanent or via a transient mechanism." xsd:string + +[Term] +id: MCO:0000051 +name: gene variant mutant +def: "a mutant genotype in which one or more genes can have modifications (subtitutions, indels, partial truncations, etc), but they conserve functionality" [] +is_a: NCIT:C25360 ! mutant + +[Term] +id: MCO:0000052 +name: plasmid mutant +is_a: NCIT:C25360 ! mutant +property_value: MCO:0000851 "a mutant in which a foreign DNA sequence is introduced to cell in an extrachromosomal unit of replication" xsd:string + +[Term] +id: MCO:0000053 +name: multicopy plasmid mutant +is_a: MCO:0000052 ! plasmid mutant +property_value: MCO:0000851 "a plasmid mutant whose plasmid is such that is capable of producing multiple copies in a cell" xsd:string + +[Term] +id: MCO:0000054 +name: multicopy plasmid backbone mutant +is_a: MCO:0000053 ! multicopy plasmid mutant +disjoint_from: MCO:0000055 ! multicopy harbored plasmid mutant +property_value: MCO:0000851 "a multicopy plasmid mutant whose plasmid is empty or harboring a foreign DNA sequence. These are usually used in control experiments." xsd:string + +[Term] +id: MCO:0000055 +name: multicopy harbored plasmid mutant +is_a: MCO:0000053 ! multicopy plasmid mutant +property_value: MCO:0000851 "a multicopy plasmid mutant whose plasmid harbors the DNA sequence under study" xsd:string + +[Term] +id: MCO:0000056 +name: unicopy plasmid mutant +comment: Que es integrativa o monocopia o inducible +is_a: MCO:0000052 ! plasmid mutant +property_value: MCO:0000851 "a plasmid mutant whose plasmid is such that is capable of producing a single copy in a cell" xsd:string + +[Term] +id: MCO:0000057 +name: unicopy plasmid backbone mutant +is_a: MCO:0000056 ! unicopy plasmid mutant +disjoint_from: MCO:0000058 ! unicopy harbored plasmid mutant +property_value: MCO:0000851 "a unicopy plasmid mutant whose plasmid is empty or not harboring a foreign DNA sequence. These are usually used in control experiments." xsd:string + +[Term] +id: MCO:0000058 +name: unicopy harbored plasmid mutant +is_a: MCO:0000056 ! unicopy plasmid mutant +property_value: MCO:0000851 "a unicopy plasmid mutant whose plasmid harbors the DNA sequence under study" xsd:string + +[Term] +id: MCO:0000059 +name: OD600 +def: "an optical density that specifies the amount of light of 600 nm of wavelenght the bearer is able to transmit" [] +xref: colombos:OD600 +is_a: MCO:0000077 ! optical density + +[Term] +id: MCO:0000060 +name: OD600 of 0.3 +xref: colombos:OD600\:0.3 +xref: colombos:OD600\:0.5-0.2 +xref: colombos:OD600\:0.6-0.3 +is_a: MCO:0000059 ! OD600 +disjoint_from: MCO:0000061 ! OD600 from 0.4 to 0.5 +disjoint_from: MCO:0000061 ! OD600 from 0.4 to 0.5 +disjoint_from: MCO:0000061 ! OD600 from 0.4 to 0.5 +property_value: MCO:0000190 "OD600 0.3" xsd:string + +[Term] +id: MCO:0000061 +name: OD600 from 0.4 to 0.5 +is_a: MCO:0000059 ! OD600 +property_value: MCO:0000190 "OD600 0.4 to 0.5" xsd:string + +[Term] +id: MCO:0000062 +name: OD600 of 0.25 +xref: colombos:OD600\:0.25 +is_a: MCO:0000059 ! OD600 +property_value: MCO:0000190 "OD600 0.25" xsd:string + +[Term] +id: MCO:0000063 +name: OD600 of 1.5 +xref: colombos:OD600\:0.3+1.2 +xref: colombos:OD600\:1.5 +is_a: MCO:0000059 ! OD600 +property_value: MCO:0000190 "OD600 1.5" xsd:string + +[Term] +id: MCO:0000064 +name: OD600 of 0.5 +xref: colombos:OD600\:0.5 +is_a: MCO:0000059 ! OD600 +property_value: MCO:0000190 "OD600 0.5" xsd:string + +[Term] +id: MCO:0000065 +name: OD600 below 0.7 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000066 +name: OD600 of 0.4 +xref: colombos:OD600\:0.4 +xref: colombos:OD600\:0.5-0.1 +is_a: MCO:0000059 ! OD600 +property_value: MCO:0000190 "OD600 0.4" xsd:string + +[Term] +id: MCO:0000067 +name: OD600 from 0.4 to 0.6 +is_a: MCO:0000059 ! OD600 +property_value: MCO:0000190 "OD600 0.4 to 0.6" xsd:string + +[Term] +id: MCO:0000068 +name: OD600 of 0.65 +is_a: MCO:0000059 ! OD600 +property_value: MCO:0000190 "OD600 0.65" xsd:string + +[Term] +id: MCO:0000069 +name: OD650 +def: "an optical density that specifies the amount of light of 650 nm of wavelenght the bearer is able to transmit" [] +is_a: MCO:0000077 ! optical density + +[Term] +id: MCO:0000070 +name: greA overexpression mutant +xref: colombos:greA_b3181.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +disjoint_from: MCO:0000191 ! nlpE overexpression mutant +property_value: MCO:0000190 "GreA overproduction" xsd:string +property_value: MCO:0000851 "an overexpression mutant in which greA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000071 +name: mlc knockout mutant +is_a: MCO:0000042 ! knockout mutant +disjoint_from: MCO:0000082 ! nanR knockout mutant +disjoint_from: MCO:0000082 ! nanR knockout mutant +disjoint_from: MCO:0000082 ! nanR knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»Ώmlc gene has been disrupted" xsd:string + +[Term] +id: MCO:0000072 +name: ethyl acetate extract of LB +is_a: CHEBI:60004 ! mixture + +[Term] +id: MCO:0000073 +name: ethyl acetate extract of conditioned medium +is_a: CHEBI:60004 ! mixture + +[Term] +id: MCO:0000074 +name: multicopy plasmid pAMC35 (dps) mutant +is_a: MCO:0000055 ! multicopy harbored plasmid mutant + +[Term] +id: MCO:0000075 +name: multicopy plasmid pRGM258 (marRAB) mutant +is_a: MCO:0000055 ! multicopy harbored plasmid mutant + +[Term] +id: MCO:0000076 +name: plasmid pCX16 (sdiA) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000077 +name: optical density +def: "A physical quality that inheres in a bearer by virtue of the amount of light that the bearer of the quality is able to transmit" [] +is_a: PATO:0001300 ! optical quality +property_value: MCO:0000190 "O.D." xsd:string +property_value: MCO:0000190 "OD" xsd:string + +[Term] +id: MCO:0000078 +name: aeration +def: "a physical quality that inheres in a bearer by virtue of the amount of oxygen or air the bearer contains" [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: MCO:0000079 +name: 10 to 40 MPa +is_a: PATO:0001025 ! pressure + +[Term] +id: MCO:0000080 +name: 0.1 MPa +is_a: PATO:0001025 ! pressure + +[Term] +id: MCO:0000081 +name: vitamin assay casamino acids +is_a: CHEBI:60004 ! mixture +property_value: IAO:0000119 https://www.mgscientific.com/products/vitamin-assay-casamino-acids-difcoandreg-dehydrated-culture-media-and-ingredients/ xsd:string +property_value: MCO:0000851 "Acid digest of casein specifically treated to remove certain vitamins." xsd:string + +[Term] +id: MCO:0000082 +name: nanR knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000190 "ama knockout mutant" xsd:string +property_value: MCO:0000190 "ama-7 knockout mutant" xsd:string +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏnanR gene has been disrupted" xsd:string + +[Term] +id: MCO:0000083 +name: high cell density +is_a: NCIT:C120538 ! cell density + +[Term] +id: MCO:0000084 +name: low cell density +is_a: NCIT:C120538 ! cell density + +[Term] +id: MCO:0000085 +name: planktonic growth +xref: colombos:GROWTH.PLANKTONIC +is_a: OMP:0007167 ! population growth phenotype +property_value: MCO:0000190 "planktonic cells" xsd:string + +[Term] +id: MCO:0000086 +name: mini-Tn5 transposon +is_a: MCO:0000385 ! transposon mutant + +[Term] +id: MCO:0000087 +name: mini-Tn5-nrdEF transposon +is_a: MCO:0000086 ! mini-Tn5 transposon + +[Term] +id: MCO:0000088 +name: mini-Tn10 transposon +is_a: MCO:0000385 ! transposon mutant + +[Term] +id: MCO:0000089 +name: IS10R +is_a: MCO:0000384 ! insertion sequence mutant + +[Term] +id: MCO:0000090 +name: IS186 +is_a: MCO:0000384 ! insertion sequence mutant + +[Term] +id: MCO:0000091 +name: IS3E +is_a: MCO:0000384 ! insertion sequence mutant + +[Term] +id: MCO:0000092 +name: allS knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏallS gene has been disrupted" xsd:string + +[Term] +id: MCO:0000093 +name: arcA knockout mutant +xref: colombos:arcA_b4401.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏarcA gene has been disrupted" xsd:string + +[Term] +id: MCO:0000095 +name: cra knockout mutant +xref: colombos:cra.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»Ώcra gene has been disrupted" xsd:string + +[Term] +id: MCO:0000096 +name: crp knockout mutant +xref: colombos:crp_b3357.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»Ώcrp gene has been disrupted" xsd:string + +[Term] +id: MCO:0000097 +name: cyaA knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000190 "cya knockout mutant" xsd:string +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏcyaA gene has been disrupted" xsd:string + +[Term] +id: MCO:0000098 +name: fhlA knockout mutant +xref: colombos:fhlA_b2731.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏfhlA gene has been disrupted" xsd:string + +[Term] +id: MCO:0000099 +name: fnr knockout mutant +xref: colombos:fnr_b1334.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»Ώfnr gene has been disrupted" xsd:string + +[Term] +id: MCO:0000100 +name: himA knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏhimA gene has been disrupted" xsd:string + +[Term] +id: MCO:0000101 +name: hydG knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏhydG gene has been disrupted" xsd:string + +[Term] +id: MCO:0000102 +name: iclR knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏiclR gene has been disrupted" xsd:string + +[Term] +id: MCO:0000103 +name: ihfB knockout mutant +xref: colombos:ihfB_b0912.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏihfB gene has been disrupted" xsd:string + +[Term] +id: MCO:0000104 +name: lrp knockout mutant +xref: colombos:lrp_b0889.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»Ώlrp gene has been disrupted" xsd:string + +[Term] +id: MCO:0000105 +name: bioA knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏbioA gene has been disrupted" xsd:string + +[Term] +id: MCO:0000106 +name: metC knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏmetC gene has been disrupted" xsd:string + +[Term] +id: MCO:0000107 +name: metE knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏmetE gene has been disrupted" xsd:string + +[Term] +id: MCO:0000108 +name: metR knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏmetR gene has been disrupted" xsd:string + +[Term] +id: MCO:0000109 +name: narL knockout mutant +xref: colombos:narL_b1221.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏnarL gene has been disrupted" xsd:string + +[Term] +id: MCO:0000110 +name: bioD knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏbioD gene has been disrupted" xsd:string + +[Term] +id: MCO:0000111 +name: oxyR knockout mutant +xref: colombos:oxyR_b3961.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏoxyR gene has been disrupted" xsd:string + +[Term] +id: MCO:0000112 +name: pdhR knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏpdhR gene has been disrupted" xsd:string + +[Term] +id: MCO:0000113 +name: relA knockout mutant +xref: colombos:relA_b2784.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏrelA gene has been disrupted" xsd:string + +[Term] +id: MCO:0000114 +name: rpoS knockout mutant +def: "a knockout mutant in which the function of ο»ΏrpoS gene has been disrupted" [] +xref: colombos:rpoS_b2741.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000190 "abrD1 knockout mutant" xsd:string + +[Term] +id: MCO:0000115 +name: rsd knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»Ώrsd gene has been disrupted" xsd:string + +[Term] +id: MCO:0000116 +name: sdiA knockout mutant +xref: colombos:sdiA_b1916.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏsdiA gene has been disrupted" xsd:string + +[Term] +id: MCO:0000117 +name: soxR knockout mutant +xref: colombos:soxR_b4063.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏsoxR gene has been disrupted" xsd:string + +[Term] +id: MCO:0000119 +name: soxS knockout mutant +xref: colombos:soxS_b4062.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏsoxS gene has been disrupted" xsd:string + +[Term] +id: MCO:0000120 +name: spoT knockout mutant +xref: colombos:spoT_b3650.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏspoT gene has been disrupted" xsd:string + +[Term] +id: MCO:0000121 +name: yiaJ knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of yiaJ gene has been disrupted" xsd:string + +[Term] +id: MCO:0000122 +name: zntR knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏzntR gene has been disrupted" xsd:string + +[Term] +id: MCO:0000123 +name: znuA knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏznuA gene has been disrupted" xsd:string + +[Term] +id: MCO:0000124 +name: znuB knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏznuB gene has been disrupted" xsd:string + +[Term] +id: MCO:0000125 +name: non-coding region variant mutant +is_a: NCIT:C25360 ! mutant +property_value: MCO:0000851 "a mutant in which a non coding region is modified" xsd:string + +[Term] +id: MCO:0000126 +name: C-T transition at nt -10 from bioA translational start site +is_a: MCO:0000125 ! non-coding region variant mutant + +[Term] +id: MCO:0000127 +name: multicopy plasmid pRB38 (arcA) mutant +is_a: MCO:0000055 ! multicopy harbored plasmid mutant + +[Term] +id: MCO:0000128 +name: multicopy plasmid pUA524 (nrdEF) mutant +is_a: MCO:0000055 ! multicopy harbored plasmid mutant + +[Term] +id: MCO:0000129 +name: multicopy plasmid pAMC35 (pexB) mutant +is_a: MCO:0000055 ! multicopy harbored plasmid mutant + +[Term] +id: MCO:0000130 +name: multicopy plasmid pGS623 (pdhR-lpd) mutant +is_a: MCO:0000055 ! multicopy harbored plasmid mutant + +[Term] +id: MCO:0000131 +name: multicopy plasmid pDEL15 (maoB) mutant +is_a: MCO:0000055 ! multicopy harbored plasmid mutant + +[Term] +id: MCO:0000132 +name: multicopy plasmid pGS613 (pdhR) mutant +is_a: MCO:0000055 ! multicopy harbored plasmid mutant + +[Term] +id: MCO:0000133 +name: multicopy plasmid pBA11 (birA) mutant +is_a: MCO:0000055 ! multicopy harbored plasmid mutant + +[Term] +id: MCO:0000135 +name: plasmid pSXS (IPTG-induced soxS) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000136 +name: plasmid pBF1 (arabinose-induced rpoS) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000137 +name: plasmid pSXR (IPTG-induced soxR) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000138 +name: plasmid pSKOG (K. oxytoca hydG) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000139 +name: plasmid pRL48 (from nt -1398 to nt +70 relative to rpoS translational start site) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000140 +name: plasmid pUBAD::rpoS (arabinose-induced rpoS) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000141 +name: plasmid pKB1A (from nt -153 to nt +1166 relative to bioA translational start site) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000142 +name: plasmid pBADBaeR (arabinose-induced baeR) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000143 +name: plasmid pKB1B (from nt -1256 to nt +63 relative to bioB translational start site) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000144 +name: plasmid pSE190 (crp H21A) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000145 +name: plasmid pKB11A (from nt -153 to nt +12 relative to bioA translational start site) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000146 +name: plasmid pSE188 (crp G162A) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000147 +name: plasmid pACYCRsd (rsd) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000148 +name: plasmid pALS13 (IPTG-induced truncated relA) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000150 +name: plasmid pSXR (not induced soxR) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000151 +name: plasmid pSE186 (crp) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000152 +name: plasmid pKB11B (from nt -102 to nt +63 relative to bioB translational start site) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000153 +name: plasmid pALS13 (not induced truncated relA) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000154 +name: plasmid pSE189 (crp H19A) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000156 +name: plasmid pBAD/Myc-HisA mutant +is_a: MCO:0000057 ! unicopy plasmid backbone mutant + +[Term] +id: MCO:0000157 +name: plasmid pBAD22A mutant +is_a: MCO:0000057 ! unicopy plasmid backbone mutant + +[Term] +id: MCO:0000158 +name: plasmid pSE380 mutant +is_a: MCO:0000057 ! unicopy plasmid backbone mutant + +[Term] +id: MCO:0000159 +name: plasmid pGB2 mutant +is_a: MCO:0000057 ! unicopy plasmid backbone mutant + +[Term] +id: MCO:0000160 +name: plasmid pSU2719 mutant +is_a: MCO:0000057 ! unicopy plasmid backbone mutant + +[Term] +id: MCO:0000161 +name: plasmid pACYC184 mutant +is_a: MCO:0000057 ! unicopy plasmid backbone mutant + +[Term] +id: MCO:0000162 +name: marA knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏmarA gene has been disrupted" xsd:string + +[Term] +id: MCO:0000163 +name: acid stress +is_a: PECO:0001036 ! chemical stress treatment +property_value: MCO:0000190 "acidic stress" xsd:string + +[Term] +id: MCO:0000164 +name: alkylation damage +is_a: PECO:0001036 ! chemical stress treatment + +[Term] +id: MCO:0000165 +name: antibiotic stress +is_a: PECO:0001036 ! chemical stress treatment + +[Term] +id: MCO:0000166 +name: copper stress +is_a: PECO:0001036 ! chemical stress treatment + +[Term] +id: MCO:0000167 +name: nitrosative stress +is_a: PECO:0001036 ! chemical stress treatment + +[Term] +id: MCO:0000168 +name: phosphosugar stress +is_a: PECO:0001036 ! chemical stress treatment + +[Term] +id: MCO:0000169 +name: zinc stress +is_a: PECO:0001036 ! chemical stress treatment + +[Term] +id: MCO:0000170 +name: temperature stress treatment +is_a: MCO:0000866 ! treatment +property_value: MCO:0000190 "temperature stimulus" xsd:string + +[Term] +id: MCO:0000171 +name: cold stress treatment +is_a: MCO:0000170 ! temperature stress treatment +property_value: MCO:0000190 "cold shock" xsd:string +property_value: MCO:0000190 "cold stress" xsd:string +property_value: MCO:0000190 "frost" xsd:string +property_value: MCO:0000190 "low temperature" xsd:string + +[Term] +id: MCO:0000172 +name: heat stress treatment +xref: colombos:HEATSHOCK +is_a: MCO:0000170 ! temperature stress treatment +property_value: MCO:0000190 "heat" xsd:string +property_value: MCO:0000190 "heat shock" xsd:string +property_value: MCO:0000190 "heat stress" xsd:string +property_value: MCO:0000190 "high temperature" xsd:string + +[Term] +id: MCO:0000173 +name: nutrient availability stress treatment +is_a: MCO:0000866 ! treatment + +[Term] +id: MCO:0000174 +name: nutrient depletion treatment +is_a: MCO:0000173 ! nutrient availability stress treatment +property_value: MCO:0000190 "nutrient deprivation" xsd:string +property_value: MCO:0000190 "nutrient starvation" xsd:string + +[Term] +id: MCO:0000175 +name: nutrient excess treatment +is_a: MCO:0000173 ! nutrient availability stress treatment + +[Term] +id: MCO:0000176 +name: nutrient limitation treatment +is_a: MCO:0000173 ! nutrient availability stress treatment + +[Term] +id: MCO:0000177 +name: iron depletion +is_a: MCO:0000174 ! nutrient depletion treatment +property_value: MCO:0000190 "iron deprivation" xsd:string +property_value: MCO:0000190 "iron starvation" xsd:string + +[Term] +id: MCO:0000178 +name: carbon starvation +is_a: MCO:0000174 ! nutrient depletion treatment +property_value: MCO:0000190 "carbon depletion" xsd:string +property_value: MCO:0000190 "carbon deprivation" xsd:string + +[Term] +id: MCO:0000179 +name: nitrogen starvation +is_a: MCO:0000174 ! nutrient depletion treatment +property_value: MCO:0000190 "nitrogen depletion" xsd:string +property_value: MCO:0000190 "nitrogen deprivation" xsd:string + +[Term] +id: MCO:0000180 +name: phosphate starvation +is_a: MCO:0000174 ! nutrient depletion treatment +property_value: MCO:0000190 "phosphate depletion" xsd:string +property_value: MCO:0000190 "phosphate deprivation" xsd:string + +[Term] +id: MCO:0000181 +name: pyrimidine limitation +is_a: MCO:0000176 ! nutrient limitation treatment +disjoint_from: MCO:0000182 ! iron limitation + +[Term] +id: MCO:0000182 +name: iron limitation +is_a: MCO:0000176 ! nutrient limitation treatment + +[Term] +id: MCO:0000183 +name: carbon limitation +is_a: MCO:0000176 ! nutrient limitation treatment + +[Term] +id: MCO:0000184 +name: nitrogen limitation +is_a: MCO:0000176 ! nutrient limitation treatment + +[Term] +id: MCO:0000185 +name: phosphate limitation +is_a: MCO:0000176 ! nutrient limitation treatment + +[Term] +id: MCO:0000186 +name: potassium limitation +is_a: MCO:0000176 ! nutrient limitation treatment +property_value: MCO:0000190 "potasium ion limiting" xsd:string + +[Term] +id: MCO:0000187 +name: pyrimidine excess +is_a: MCO:0000175 ! nutrient excess treatment + +[Term] +id: MCO:0000188 +name: dessication +is_a: MCO:0000866 ! treatment + +[Term] +id: MCO:0000189 +name: envelope stress +is_a: MCO:0000866 ! treatment +property_value: MCO:0000190 "cell membrane damage" xsd:string +property_value: MCO:0000190 "envelope damage" xsd:string +property_value: MCO:0000190 "membrane distortion" xsd:string +property_value: MCO:0000190 "outer membrane damage" xsd:string +property_value: MCO:0000190 "peptidoglycan damage" xsd:string + +[Term] +id: MCO:0000191 +name: nlpE overexpression mutant +is_a: MCO:0000041 ! overexpression mutant +disjoint_from: MCO:0000192 ! ompC overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which nlpE is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000192 +name: ompC overexpression mutant +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which ompC is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000193 +name: ompF overexpression mutant +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which ompF is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000194 +name: ompX overexpression mutant +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which ompX is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000195 +name: rpoE overexpression mutant +xref: colombos:rpoE_b2573.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which rpoE is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000196 +name: 28.0 C +is_a: PATO:0000146 ! temperature +disjoint_from: MCO:0000197 ! 30.0 C +disjoint_from: MCO:0000197 ! 30.0 C +disjoint_from: MCO:0000197 ! 30.0 C +property_value: MCO:0000190 "28ΒΊC" xsd:string + +[Term] +id: MCO:0000197 +name: 30.0 C +xref: colombos:TEMPERATURE\:30Β°C +xref: colombos:TEMPERATURE\:37-7Β°C +is_a: PATO:0000146 ! temperature +property_value: MCO:0000190 "30ΒΊC" xsd:string + +[Term] +id: MCO:0000198 +name: 32.0 C +xref: colombos:TEMPERATURE\:32Β°C +is_a: PATO:0000146 ! temperature +property_value: MCO:0000190 "32ΒΊC" xsd:string + +[Term] +id: MCO:0000199 +name: 37.0 C +xref: colombos:TEMPERATURE\:37Β°C +is_a: PATO:0000146 ! temperature +property_value: MCO:0000190 "37ΒΊC" xsd:string + +[Term] +id: MCO:0000200 +name: (NH4)2Fe(SO4)2 10 mM +is_a: MCO:0000794 ! chebi_requests + +[Term] +id: MCO:0000201 +name: (NH4)2Fe(SO4)2 30 Β΅M +is_a: MCO:0000200 ! (NH4)2Fe(SO4)2 10 mM + +[Term] +id: MCO:0000202 +name: CCCP 10 Β΅M +is_a: CHEBI:3259 ! CCCP + +[Term] +id: MCO:0000203 +name: CTP 800 Β΅M +is_a: CHEBI:17677 ! CTP + +[Term] +id: MCO:0000204 +name: Cd(II) 1 to 100 Β΅M +is_a: CHEBI:48775 ! cadmium(2+) + +[Term] +id: MCO:0000205 +name: cadmium dichloride 0.5 mM +is_a: CHEBI:35456 ! cadmium dichloride +property_value: MCO:0000190 "CdCl2 0.5 mM" xsd:string + +[Term] +id: MCO:0000206 +name: copper(II) sulfate 3 mM +is_a: CHEBI:23414 ! copper(II) sulfate +property_value: MCO:0000190 "CuSO4 3 mM" xsd:string + +[Term] +id: MCO:0000207 +name: D-xylose 120 Β΅M +is_a: CHEBI:65327 ! D-xylose + +[Term] +id: MCO:0000208 +name: N-Decanoyl-DL-homoserine lactone 1 Β΅M +comment: This class is temporarily here, until we request chebi incorporations. +is_a: MCO:0000794 ! chebi_requests +property_value: MCO:0000190 "DHSL 1 Β΅M" xsd:string + +[Term] +id: MCO:0000209 +name: DNP 0.5 mM +is_a: CHEBI:42017 ! 2,4-dinitrophenol + +[Term] +id: MCO:0000210 +name: 2,2'-bipyridine 150 ΞΌm +is_a: CHEBI:30351 ! 2,2'-bipyridine +property_value: MCO:0000190 "2,2'-dipyridyl 150 ΞΌm" xsd:string +property_value: MCO:0000190 "Dipy 150 Β΅M" xsd:string + +[Term] +id: MCO:0000211 +name: 2,2’-bipyridine 20 mM +is_a: CHEBI:30351 ! 2,2'-bipyridine +relationship: MCO:0000860 MCO:0000182 ! used in Escherichia coli treatment iron limitation +property_value: MCO:0000190 "2,2’-dipyridyl 20 mM" xsd:string + +[Term] +id: MCO:0000212 +name: 2,2’-bipyridine 200 Β΅M +is_a: CHEBI:30351 ! 2,2'-bipyridine +relationship: MCO:0000860 MCO:0000177 ! used in Escherichia coli treatment iron depletion +property_value: MCO:0000190 "2,2'-bipyridine 0.2 mM" xsd:string +property_value: MCO:0000190 "2,2’-dipyridyl 200 Β΅M" xsd:string + +[Term] +id: MCO:0000213 +name: EGTA 50 mM +is_a: CHEBI:30740 ! ethylene glycol bis(2-aminoethyl)tetraacetic acid + +[Term] +id: MCO:0000214 +name: iron(2+) sulfate (anhydrous) 20 Β΅M +is_a: CHEBI:75832 ! iron(2+) sulfate (anhydrous) +property_value: MCO:0000190 "FeSO4 20 Β΅M" xsd:string + +[Term] +id: MCO:0000215 +name: GTP 800 Β΅M +is_a: CHEBI:15996 ! GTP + +[Term] +id: MCO:0000216 +name: S-nitrosoglutathione 50 Β΅M +is_a: CHEBI:50091 ! S-nitrosoglutathione +property_value: MCO:0000190 "GSNO 50 Β΅M" xsd:string + +[Term] +id: MCO:0000217 +name: hydrogen peroxide 100 Β΅M +is_a: CHEBI:16240 ! hydrogen peroxide +disjoint_from: MCO:0000218 ! hydrogen peroxide 120 Β΅M +property_value: MCO:0000190 "H2O2 100 Β΅M" xsd:string + +[Term] +id: MCO:0000218 +name: hydrogen peroxide 120 Β΅M +is_a: CHEBI:16240 ! hydrogen peroxide +relationship: MCO:0000860 PECO:0001037 ! used in Escherichia coli treatment oxidative stress treatment +property_value: MCO:0000190 "H2O2 120 Β΅M" xsd:string + +[Term] +id: MCO:0000219 +name: Hg(II) 1 to 10 Β΅M +is_a: CHEBI:16793 ! mercury(2+) + +[Term] +id: MCO:0000220 +name: L-ascorbate 60 mM +is_a: CHEBI:38290 ! L-ascorbate + +[Term] +id: MCO:0000221 +name: L-fucose 60 mM +is_a: CHEBI:18287 ! L-fucose + +[Term] +id: MCO:0000222 +name: L-glutamine 0.2% +is_a: CHEBI:18050 ! L-glutamine + +[Term] +id: MCO:0000223 +name: L-rhamnose 0.2% +is_a: CHEBI:62345 ! L-rhamnose + +[Term] +id: MCO:0000224 +name: maltose 0.2% +is_a: CHEBI:17306 ! maltose + +[Term] +id: MCO:0000225 +name: methyl methanesulfonate 0.05% +is_a: CHEBI:25255 ! methyl methanesulfonate +property_value: MCO:0000190 "MMS 0.05%" xsd:string + +[Term] +id: MCO:0000226 +name: MnCl2 1 mM +is_a: CHEBI:63041 ! manganese(II) chloride + +[Term] +id: MCO:0000227 +name: ammonium chloride 10 mM +is_a: CHEBI:31206 ! ammonium chloride +property_value: MCO:0000190 "NH4Cl 10 mM" xsd:string + +[Term] +id: MCO:0000228 +name: sodium chloride 0.35 M +is_a: CHEBI:26710 ! sodium chloride +disjoint_from: MCO:0000766 ! sodium chloride 0.3 M +relationship: MCO:0000860 PECO:0001038 ! used in Escherichia coli treatment osmotic stress treatment +property_value: MCO:0000190 "NaCl 0.35 M" xsd:string + +[Term] +id: MCO:0000229 +name: Pb(II) 0.5 mM +is_a: CHEBI:49807 ! lead(2+) + +[Term] +id: MCO:0000230 +name: PbCl2 1 mM +is_a: CHEBI:88212 ! lead(II) chloride + +[Term] +id: MCO:0000231 +name: T-broth 0.02% +is_a: MCO:0000027 ! T-broth + +[Term] +id: MCO:0000232 +name: tetrachlorosalicylanilide 10 Β΅M +is_a: CHEBI:9473 ! tetrachlorosalicylanilide +property_value: MCO:0000190 "TCS 10 Β΅M" xsd:string + +[Term] +id: MCO:0000233 +name: TMAO 50 mM +is_a: CHEBI:15724 ! trimethylamine N-oxide + +[Term] +id: MCO:0000234 +name: N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine 1.5 Β΅M +is_a: CHEBI:88217 ! N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine +relationship: MCO:0000860 MCO:0000861 ! used in Escherichia coli treatment zinc depletion +property_value: MCO:0000190 "TPEN 1.5 Β΅M" xsd:string + +[Term] +id: MCO:0000235 +name: UMP 0.25 mM +is_a: CHEBI:16695 ! UMP +relationship: MCO:0000860 MCO:0000181 ! used in Escherichia coli treatment pyrimidine limitation + +[Term] +id: MCO:0000236 +name: UTP 50 Β΅M +is_a: CHEBI:15713 ! UTP + +[Term] +id: MCO:0000237 +name: UTP 800 Β΅M +is_a: CHEBI:15713 ! UTP + +[Term] +id: MCO:0000238 +name: N-(3-oxohexanoyl)-L-homoserine lactone 1 Β΅M +is_a: CHEBI:63789 ! N-(3-oxohexanoyl)-L-homoserine lactone +property_value: MCO:0000190 "V. fischeri autoinducer 1 ΞΌL" xsd:string + +[Term] +id: MCO:0000239 +name: V. harveyi autoinducer 1 Β΅M +comment: This class is temporarily here, until we request chebi incorporations. +is_a: MCO:0000794 ! chebi_requests +property_value: MCO:0000190 "(N-(3-hydroxybutanoyl)-L-homoserine lactone 1 Β΅M" xsd:string + +[Term] +id: MCO:0000240 +name: Zn(II) 1 mM +is_a: CHEBI:29105 ! zinc(2+) + +[Term] +id: MCO:0000241 +name: Zn(II) 1.1 mM +is_a: CHEBI:29105 ! zinc(2+) + +[Term] +id: MCO:0000242 +name: ZnCl2 0.2 to 1 mM +is_a: CHEBI:49976 ! zinc dichloride + +[Term] +id: MCO:0000243 +name: ZnCl2 1 mM +is_a: CHEBI:49976 ! zinc dichloride + +[Term] +id: MCO:0000244 +name: zinc sulfate 1 mM +is_a: CHEBI:35176 ! zinc sulfate +property_value: MCO:0000190 "ZnSO4 1 mM" xsd:string + +[Term] +id: MCO:0000245 +name: zinc sulfate 5 Β΅M +is_a: CHEBI:35176 ! zinc sulfate +property_value: MCO:0000190 "ZnSO4 5 Β΅M" xsd:string + +[Term] +id: MCO:0000246 +name: acetate 0.009% +is_a: CHEBI:30089 ! acetate +disjoint_from: MCO:0000247 ! acetate 0.4% + +[Term] +id: MCO:0000247 +name: acetate 0.4% +is_a: CHEBI:30089 ! acetate + +[Term] +id: MCO:0000248 +name: acetate 4 g/L +is_a: CHEBI:30089 ! acetate + +[Term] +id: MCO:0000249 +name: acetate 50 mM +is_a: CHEBI:30089 ! acetate + +[Term] +id: MCO:0000250 +name: allantoin 60 mM +is_a: CHEBI:15676 ! allantoin + +[Term] +id: MCO:0000251 +name: amino acids 50 Β΅g +is_a: CHEBI:33709 ! amino acid + +[Term] +id: MCO:0000252 +name: ammonium sulfate 0.5 mM +is_a: CHEBI:62946 ! ammonium sulfate + +[Term] +id: MCO:0000253 +name: ammonium sulfate 20 mM +is_a: CHEBI:62946 ! ammonium sulfate + +[Term] +id: MCO:0000254 +name: arginine 1 mM +is_a: CHEBI:29016 ! arginine + +[Term] +id: MCO:0000255 +name: aspartate 50 mM +is_a: CHEBI:132943 ! aspartate + +[Term] +id: MCO:0000256 +name: biotin 4 Β΅M +is_a: CHEBI:15956 ! biotin + +[Term] +id: MCO:0000257 +name: cAMP 1 mM +is_a: CHEBI:17489 ! 3',5'-cyclic AMP + +[Term] +id: MCO:0000258 +name: cAMP 2 mM +is_a: CHEBI:17489 ! 3',5'-cyclic AMP + +[Term] +id: MCO:0000259 +name: cAMP 5 mM +is_a: CHEBI:17489 ! 3',5'-cyclic AMP + +[Term] +id: MCO:0000260 +name: cadmium dichloride 600 Β΅M +is_a: CHEBI:35456 ! cadmium dichloride +property_value: MCO:0000190 "cadmium chloride 600 Β΅M" xsd:string + +[Term] +id: MCO:0000261 +name: casamino acids 0.05% +is_a: MICRO:0000184 ! casamino acids + +[Term] +id: MCO:0000262 +name: casamino acids 0.2% +is_a: MICRO:0000184 ! casamino acids + +[Term] +id: MCO:0000263 +name: casamino acids 0.4% +is_a: MICRO:0000184 ! casamino acids + +[Term] +id: MCO:0000264 +name: casamino acids 0.5% +is_a: MICRO:0000184 ! casamino acids + +[Term] +id: MCO:0000265 +name: desferrioxamine B mesylate 20 mM +is_a: CHEBI:31460 ! desferrioxamine B mesylate +property_value: MCO:0000190 "desferal 20 mM" xsd:string + +[Term] +id: MCO:0000266 +name: desferrioxamine B mesylate 5 Β΅M +is_a: CHEBI:31460 ! desferrioxamine B mesylate +property_value: MCO:0000190 "desferal 5 Β΅M" xsd:string + +[Term] +id: MCO:0000267 +name: ethidium bromide 250 Β΅M +is_a: CHEBI:4883 ! ethidium bromide + +[Term] +id: MCO:0000268 +name: ferri-desferal 10 Β΅M +is_a: CHEBI:5044 ! ferrioxamine B + +[Term] +id: MCO:0000269 +name: fructose 0.4% +is_a: CHEBI:28757 ! fructose + +[Term] +id: MCO:0000270 +name: fumarate 50 mM +comment: This class is temporarily here, until we request chebi incorporations. +is_a: MCO:0000794 ! chebi_requests + +[Term] +id: MCO:0000271 +name: glucose 0.05% +is_a: CHEBI:17234 ! glucose + +[Term] +id: MCO:0000272 +name: glucose 0.2% +is_a: CHEBI:17234 ! glucose + +[Term] +id: MCO:0000273 +name: glucose 0.4% +is_a: CHEBI:17234 ! glucose + +[Term] +id: MCO:0000274 +name: glucose 0.5% +is_a: CHEBI:17234 ! glucose + +[Term] +id: MCO:0000275 +name: glucose 10 mM +is_a: CHEBI:17234 ! glucose + +[Term] +id: MCO:0000276 +name: glucose 11 mM +is_a: CHEBI:17234 ! glucose + +[Term] +id: MCO:0000277 +name: glucose 120 mM +is_a: CHEBI:17234 ! glucose + +[Term] +id: MCO:0000278 +name: glucose 2 mg/mL +xref: colombos:GLUCOSE\:2_g/L +is_a: CHEBI:17234 ! glucose +property_value: MCO:0000190 "glucose 2 g/L" xsd:string + +[Term] +id: MCO:0000279 +name: glucose 2% +is_a: CHEBI:17234 ! glucose + +[Term] +id: MCO:0000280 +name: glucose 4 g/L +is_a: CHEBI:17234 ! glucose + +[Term] +id: MCO:0000281 +name: glucose 60 mM +is_a: CHEBI:17234 ! glucose + +[Term] +id: MCO:0000282 +name: glycerol 0.4% +is_a: CHEBI:17754 ! glycerol +disjoint_from: MCO:0000283 ! glycerol 1% + +[Term] +id: MCO:0000283 +name: glycerol 1% +is_a: CHEBI:17754 ! glycerol + +[Term] +id: MCO:0000284 +name: homocysteine 1 mM +is_a: CHEBI:17230 ! homocysteine + +[Term] +id: MCO:0000285 +name: homoserine lactone 10 mM +is_a: CHEBI:17289 ! homoserine lactone + +[Term] +id: MCO:0000286 +name: hydroxyurea 50 mM +is_a: CHEBI:44423 ! hydroxyurea + +[Term] +id: MCO:0000287 +name: leucine 0.76 mM +is_a: CHEBI:25017 ! leucine + +[Term] +id: MCO:0000288 +name: malate 50 mM +is_a: CHEBI:25115 ! malate + +[Term] +id: MCO:0000289 +name: maleate 50 mM +is_a: CHEBI:132951 ! maleate + +[Term] +id: MCO:0000290 +name: methionine 200 Β΅g/mL +is_a: CHEBI:16811 ! methionine + +[Term] +id: MCO:0000291 +name: nalidixic acid 160 Β΅M +is_a: CHEBI:100147 ! nalidixic acid +disjoint_from: MCO:0000756 ! nalidixic acid 10Β΅g/ml + +[Term] +id: MCO:0000292 +name: nickel dichloride 5 Β΅M +is_a: CHEBI:34887 ! nickel dichloride +relationship: MCO:0000860 PECO:0001037 ! used in Escherichia coli treatment oxidative stress treatment +property_value: MCO:0000190 "NiCl2 5 Β΅M" xsd:string + +[Term] +id: MCO:0000293 +name: nitrate 50 mM +is_a: CHEBI:17632 ! nitrate +disjoint_from: MCO:0000759 ! nitrate 0.01 M + +[Term] +id: MCO:0000294 +name: novobiocin 12.5 Β΅g/mL +is_a: CHEBI:28368 ! novobiocin + +[Term] +id: MCO:0000295 +name: dioxygen 10 Β΅M +is_a: CHEBI:15379 ! dioxygen +property_value: MCO:0000190 "oxygen 10 Β΅M" xsd:string + +[Term] +id: MCO:0000296 +name: dioxygen < 10 Β΅M +is_a: CHEBI:15379 ! dioxygen +property_value: MCO:0000190 "oxygen < 10 Β΅M" xsd:string + +[Term] +id: MCO:0000297 +name: dioxygen > 10 Β΅M +is_a: CHEBI:15379 ! dioxygen +property_value: MCO:0000190 "oxygen > 10 Β΅M" xsd:string + +[Term] +id: MCO:0000298 +name: p-aminobenzoic acid 40 Β΅M +is_a: CHEBI:30753 ! 4-aminobenzoic acid + +[Term] +id: MCO:0000299 +name: p-hydroxybenzoic acid 40 Β΅M +is_a: CHEBI:30763 ! 4-hydroxybenzoic acid + +[Term] +id: MCO:0000300 +name: paraquat 0.25 mM +is_a: CHEBI:34905 ! paraquat +relationship: MCO:0000860 PECO:0001037 ! used in Escherichia coli treatment oxidative stress treatment + +[Term] +id: MCO:0000301 +name: paraquat 0.5 mM +is_a: CHEBI:34905 ! paraquat + +[Term] +id: MCO:0000302 +name: paraquat 50 Β΅M +is_a: CHEBI:34905 ! paraquat + +[Term] +id: MCO:0000303 +name: paraquat 500 Β΅M +is_a: CHEBI:34905 ! paraquat + +[Term] +id: MCO:0000304 +name: pyruvate 40 mM +is_a: CHEBI:15361 ! pyruvate + +[Term] +id: MCO:0000305 +name: phenylalanine 1 mM +is_a: CHEBI:28044 ! phenylalanine + +[Term] +id: MCO:0000306 +name: phenylalanine 0.1 mg/mL +is_a: CHEBI:28044 ! phenylalanine + +[Term] +id: MCO:0000307 +name: potassium glutamate 300 mM +comment: This class is temporarily here, until we request chebi incorporations. +is_a: MCO:0000794 ! chebi_requests + +[Term] +id: MCO:0000308 +name: potassium glutamate 50 mM +comment: This class is temporarily here, until we request chebi incorporations. +is_a: MCO:0000307 ! potassium glutamate 300 mM + +[Term] +id: MCO:0000309 +name: rifampicin 500 Β΅g/mL +is_a: CHEBI:28077 ! rifampicin +property_value: MCO:0000190 "rifampin 500 Β΅g/mL" xsd:string + +[Term] +id: MCO:0000310 +name: salicylate 5 mM +is_a: CHEBI:30762 ! salicylate + +[Term] +id: MCO:0000311 +name: sodium acetate 2% +is_a: CHEBI:32954 ! sodium acetate + +[Term] +id: MCO:0000312 +name: sodium arsenite 50 Β΅M +is_a: CHEBI:29678 ! sodium arsenite + +[Term] +id: MCO:0000313 +name: sodium citrate 10 mM +is_a: CHEBI:53258 ! sodium citrate + +[Term] +id: MCO:0000314 +name: sodium formate 30 mM +is_a: CHEBI:62965 ! sodium formate + +[Term] +id: MCO:0000315 +name: sodium molybdate 1 Β΅M +is_a: CHEBI:75215 ! sodium molybdate (anhydrous) + +[Term] +id: MCO:0000316 +name: sodium nitrate 20 mM +is_a: CHEBI:63005 ! sodium nitrate + +[Term] +id: MCO:0000317 +name: sodium nitrite 2.5 mM +is_a: CHEBI:78870 ! sodium nitrite + +[Term] +id: MCO:0000318 +name: sodium nitroprusside 50 Β΅M +is_a: CHEBI:29321 ! sodium nitroprusside + +[Term] +id: MCO:0000319 +name: sodium salicylate 5 mM +is_a: CHEBI:9180 ! Sodium salicylate + +[Term] +id: MCO:0000320 +name: sodium selenite 1 Β΅M +is_a: CHEBI:48843 ! disodium selenite + +[Term] +id: MCO:0000321 +name: succinate 0.5% +is_a: CHEBI:26806 ! succinate + +[Term] +id: MCO:0000322 +name: succinate 40 mM +is_a: CHEBI:26806 ! succinate + +[Term] +id: MCO:0000323 +name: succinate 50 mM +is_a: CHEBI:26806 ! succinate + +[Term] +id: MCO:0000324 +name: succinate 60 mM +is_a: CHEBI:26806 ! succinate + +[Term] +id: MCO:0000325 +name: thiamine 0.2 Β΅g/mL +is_a: CHEBI:26948 ! thiamine + +[Term] +id: MCO:0000326 +name: thiamine 1 Β΅g/mL +is_a: CHEBI:26948 ! thiamine + +[Term] +id: MCO:0000327 +name: thiamine 10 Β΅g/mL +is_a: CHEBI:26948 ! thiamine + +[Term] +id: MCO:0000328 +name: thiamine 5 Β΅g/mL +is_a: CHEBI:26948 ! thiamine + +[Term] +id: MCO:0000329 +name: thiamine hydrochloride 0.015 mM +is_a: CHEBI:49105 ! thiamine hydrochloride + +[Term] +id: MCO:0000330 +name: trehalose 0.5 to 0.7 M +is_a: CHEBI:27082 ! trehalose + +[Term] +id: MCO:0000331 +name: trehalose 0.7 M +is_a: MCO:0000330 ! trehalose 0.5 to 0.7 M + +[Term] +id: MCO:0000332 +name: trehalose 1.2 M +is_a: MCO:0000330 ! trehalose 0.5 to 0.7 M + +[Term] +id: MCO:0000333 +name: trehalose 1 M +is_a: MCO:0000330 ! trehalose 0.5 to 0.7 M + +[Term] +id: MCO:0000334 +name: tryptophan 1 mM +is_a: CHEBI:27897 ! tryptophan + +[Term] +id: MCO:0000335 +name: tryptone 10 g/L +is_a: MICRO:0000182 ! tryptone + +[Term] +id: MCO:0000336 +name: tyramine 3 mM +is_a: CHEBI:15760 ! tyramine + +[Term] +id: MCO:0000337 +name: tyrosine 0.1 mg/mL +is_a: CHEBI:18186 ! tyrosine + +[Term] +id: MCO:0000338 +name: tyrosine 1 mM +is_a: CHEBI:18186 ! tyrosine + +[Term] +id: MCO:0000339 +name: uracil 1 mM +is_a: CHEBI:17568 ! uracil +relationship: MCO:0000860 MCO:0000187 ! used in Escherichia coli treatment pyrimidine excess + +[Term] +id: MCO:0000340 +name: vitamin assay casamino acids 0.5% +is_a: MCO:0000081 ! vitamin assay casamino acids + +[Term] +id: MCO:0000341 +name: yeast extract 5 g/L +is_a: MICRO:0000201 ! yeast extract + +[Term] +id: MCO:0000342 +name: growth phase +xref: colombos:GROWTH.PHASE_UNKNOWN +is_a: BFO:0000011 ! spatiotemporal region + +[Term] +id: MCO:0000343 +name: protox assay +is_a: MICRO:0000067 ! microbiological culture medium + +[Term] +id: MCO:0000344 +name: isoosmotic treatment +is_a: PECO:0001038 ! osmotic stress treatment +property_value: MCO:0000190 "Isoosmotic" xsd:string + +[Term] +id: MCO:0000345 +name: OD650 of 0.2 +is_a: MCO:0000069 ! OD650 +disjoint_from: MCO:0000346 ! OD650 of 0.4 +disjoint_from: MCO:0000346 ! OD650 of 0.4 +property_value: MCO:0000190 "OD650 0.2" xsd:string + +[Term] +id: MCO:0000346 +name: OD650 of 0.4 +is_a: MCO:0000069 ! OD650 +property_value: MCO:0000190 "OD650 0.4" xsd:string + +[Term] +id: MCO:0000347 +name: OD650 of 0.5 +is_a: MCO:0000069 ! OD650 +property_value: MCO:0000190 "OD650 0.5" xsd:string + +[Term] +id: MCO:0000348 +name: OD650 of 0.8 +is_a: MCO:0000069 ! OD650 +property_value: MCO:0000190 "OD650 0.8" xsd:string + +[Term] +id: MCO:0000349 +name: OD650 from 0.5 to 0.7 +is_a: MCO:0000069 ! OD650 +property_value: MCO:0000190 "OD650 between 0.5 and 0.7" xsd:string + +[Term] +id: MCO:0000350 +name: allR knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏallR gene has been disrupted" xsd:string + +[Term] +id: MCO:0000351 +name: ο»ΏarsR knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏarsR gene has been disrupted" xsd:string + +[Term] +id: MCO:0000352 +name: hyperosmotic treatment +is_a: PECO:0001038 ! osmotic stress treatment +property_value: MCO:0000190 "high osmolarity" xsd:string +property_value: MCO:0000190 "hyperosmotic" xsd:string + +[Term] +id: MCO:0000353 +name: hypochlorite stress +is_a: PECO:0001036 ! chemical stress treatment + +[Term] +id: MCO:0000354 +name: magnesium limitation +is_a: MCO:0000176 ! nutrient limitation treatment +property_value: MCO:0000190 "low magnesium" xsd:string + +[Term] +id: MCO:0000355 +name: hypoosmotic treatment +is_a: PECO:0001038 ! osmotic stress treatment +property_value: MCO:0000190 "low osmolarity" xsd:string + +[Term] +id: MCO:0000356 +name: pH 5.0 +xref: colombos:pH\:5 +is_a: ZECO:0000201 ! acidic +disjoint_from: MCO:0000357 ! pH 5.8 +disjoint_from: MCO:0000357 ! pH 5.8 + +[Term] +id: MCO:0000357 +name: pH 5.8 +is_a: ZECO:0000201 ! acidic + +[Term] +id: MCO:0000358 +name: pH 6.0 +is_a: ZECO:0000201 ! acidic + +[Term] +id: MCO:0000359 +name: pH 6.5 +is_a: ZECO:0000201 ! acidic + +[Term] +id: MCO:0000360 +name: pH 7.0 +xref: colombos:pH\:5+2 +xref: colombos:pH\:5.5+1.5 +xref: colombos:pH\:7 +is_a: ZECO:0000200 ! pH + +[Term] +id: MCO:0000361 +name: pH 7.6 +xref: colombos:pH\:7.6 +is_a: ZECO:0000202 ! basic +disjoint_from: MCO:0000717 ! pH 8.5 + +[Term] +id: MCO:0000362 +name: nitrogen rich +is_a: MCO:0000175 ! nutrient excess treatment + +[Term] +id: MCO:0000363 +name: trehalose above 1.2 M +is_a: MCO:0000330 ! trehalose 0.5 to 0.7 M + +[Term] +id: MCO:0000364 +name: lag phase +def: "a growth phase in which growth rate is null" [] +xref: colombos:GROWTH.LAG +xref: colombos:GROWTH.LAG\:+1 +is_a: MCO:0000342 ! growth phase +disjoint_from: MCO:0000365 ! acceleration phase +disjoint_from: MCO:0000365 ! acceleration phase + +[Term] +id: MCO:0000365 +name: acceleration phase +def: "a growth phase in wich growth rate increases" [] +is_a: MCO:0000342 ! growth phase +property_value: MCO:0000190 "transition into exponential phase" xsd:string + +[Term] +id: MCO:0000366 +name: exponential phase +def: "a growth phase in which growth rate is constant" [] +xref: colombos:GROWTH.EXPONENTIAL +xref: colombos:GROWTH.EXPONENTIAL\:+1 +is_a: MCO:0000342 ! growth phase +property_value: MCO:0000190 "exponential growth phase" xsd:string +property_value: MCO:0000190 "log phase" xsd:string +property_value: MCO:0000190 "logarithmic phase" xsd:string + +[Term] +id: MCO:0000367 +name: retardation phase +def: "a growth phase in which growth rate decreases" [] +comment: Evidencias de que el tΓ©rmino TRANSITION de colombos corresponde a retardation phase:\n\nThe passage of E. coli from exponential to transition to stationary phase was mirrored by successive depletion of amino acids from the growth medium (Fig. 3) and could be delayed by amino acid supplementation (Fig. 5). PMID:22389370. +xref: colombos:GROWTH.TRANSITION +is_a: MCO:0000342 ! growth phase +property_value: MCO:0000190 "transition into stationary phase" xsd:string +property_value: MCO:0000190 "transition-to-stationary" xsd:string + +[Term] +id: MCO:0000368 +name: stationary phase +def: "a growth phase after retardation phase in which growth rate is null" [] +xref: colombos:GROWTH.STATIONARY +xref: colombos:GROWTH.STATIONARY\:+1 +is_a: MCO:0000342 ! growth phase + +[Term] +id: MCO:0000369 +name: phase of decline +def: "a growth phase in which growth rate is negative" [] +is_a: MCO:0000342 ! growth phase + +[Term] +id: MCO:0000370 +name: early exponential phase +def: "is a growth phase that is part of exponential phase and that is located between acceleration phase and mid exponential phase" [] +is_a: MCO:0000342 ! growth phase + +[Term] +id: MCO:0000371 +name: early stationary phase +def: "a growth phase that is part of stationary phase and locates right after retardation phase" [] +is_a: MCO:0000342 ! growth phase + +[Term] +id: MCO:0000372 +name: early to mid exponential phase +def: "is a growth phase that comprises early exponential phase and mid exponential phase" [] +is_a: MCO:0000342 ! growth phase + +[Term] +id: MCO:0000373 +name: late exponential phase +def: "is a growth phase that is part of exponential phase and locates between mid exponential phase and retardation phase" [] +is_a: MCO:0000342 ! growth phase + +[Term] +id: MCO:0000374 +name: mid exponential phase +def: "growth phase that is part of exponential phase and locates in the middle of the exponential phase" [] +is_a: MCO:0000342 ! growth phase +property_value: MCO:0000190 "mid log phase" xsd:string +property_value: MCO:0000190 "mid-exponential phase" xsd:string + +[Term] +id: MCO:0000375 +name: mid to late exponential phase +def: "is a growth phase that comprises mid exponential phase and late exponential phase" [] +is_a: MCO:0000342 ! growth phase + +[Term] +id: MCO:0000376 +name: hydH knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏhydH gene has been disrupted" xsd:string + +[Term] +id: MCO:0000377 +name: leuO overexpression mutant +def: "an overexpression mutant in which leuO is expressed at higher levels than in the wild type" [] +xref: colombos:leuO.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000190 "leuO overexpression" xsd:string + +[Term] +id: MCO:0000378 +name: marR knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏmarR gene has been disrupted" xsd:string + +[Term] +id: MCO:0000379 +name: marB knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏmarB gene has been disrupted" xsd:string + +[Term] +id: MCO:0000380 +name: nrdA knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏnrdA gene has been disrupted" xsd:string + +[Term] +id: MCO:0000381 +name: nrdB knockout mutant +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000851 "a knockout mutant in which the function of ο»ΏnrdB gene has been disrupted" xsd:string + +[Term] +id: MCO:0000383 +name: genotype +is_a: MCO:0000895 ! biological quality +property_value: MCO:0000851 "a biological quality that inheres in specific organisms and that describes its total genetic content" xsd:string + +[Term] +id: MCO:0000384 +name: insertion sequence mutant +is_a: MCO:0000045 ! transposable element mutant +property_value: IAO:0000119 "adapted from\nISBN 0 87893 608 4" xsd:string +property_value: MCO:0000851 "a transposable element mutant in which a DNA sequence has been added to the chromosome by means of an insertion sequence, which is a small transposable element (800-2000 bp) and encode only the ability to transpose" xsd:string + +[Term] +id: MCO:0000385 +name: transposon mutant +is_a: MCO:0000045 ! transposable element mutant +property_value: IAO:0000119 "adapted from\nISBN 0 87893 608 4" xsd:string +property_value: MCO:0000851 "a transposable element mutant in which a DNA sequence has been added to the chromosome by means of a transposon, which are large transposable elements (more than 2000 bp) and encode a variety of enzymes in addition to those that catalyze transposition" xsd:string + +[Term] +id: MCO:0000386 +name: growth rate of 0.08 h-1 +xref: colombos:GROWTH_RATE\:0.11-0.03h-1 +is_a: OMP:0007156 ! growth rate phenotype +disjoint_from: MCO:0000387 ! growth rate of 0.11 h-1 + +[Term] +id: MCO:0000387 +name: growth rate of 0.11 h-1 +xref: colombos:GROWTH_RATE\:0.11h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000388 +name: growth rate of 0.1 h-1 +xref: colombos:GROWTH_RATE\:0.1h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000389 +name: growth rate of 0.2 h-1 +xref: colombos:GROWTH_RATE\:0.1+0.1h-1 +xref: colombos:GROWTH_RATE\:0.2h-1 +xref: colombos:GROWTH_RATE\:0.46-0.26h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000390 +name: growth rate of 0.21 h-1 +xref: colombos:GROWTH_RATE\:0.11+0.10h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000391 +name: growth rate of 0.26 h-1 +xref: colombos:GROWTH_RATE\:0.11+0.15h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000392 +name: growth rate of 0.29 h-1 +xref: colombos:GROWTH_RATE\:0.46-0.17h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000393 +name: growth rate of 0.3 h-1 +xref: colombos:GROWTH_RATE\:+0.3h-1 +xref: colombos:GROWTH_RATE\:0.1+0.2h-1 +xref: colombos:GROWTH_RATE\:0.2+0.1h-1 +xref: colombos:GROWTH_RATE\:0.3h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000394 +name: growth rate of 0.31 h-1 +xref: colombos:GROWTH_RATE\:0.11+0.20h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000395 +name: growth rate of 0.36 h-1 +xref: colombos:GROWTH_RATE\:0.11+0.25h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000396 +name: growth rate of 0.39 h-1 +xref: colombos:GROWTH_RATE\:0.46-0.07h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000397 +name: growth rate of 0.4 h-1 +xref: colombos:GROWTH_RATE\:0.1+0.3h-1 +xref: colombos:GROWTH_RATE\:0.11+0.29h-1 +xref: colombos:GROWTH_RATE\:0.2+0.2h-1 +xref: colombos:GROWTH_RATE\:0.4h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000398 +name: growth rate of 0.46 h-1 +xref: colombos:GROWTH_RATE\:0.46h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000399 +name: growth rate of 0.48 h-1 +xref: colombos:GROWTH_RATE\:0.11+0.37h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000400 +name: growth rate of 0.6 h-1 +xref: colombos:GROWTH_RATE\:0.1+0.5h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000401 +name: growth rate of 0.7 h-1 +xref: colombos:GROWTH_RATE\:0.1+0.6h-1 +is_a: OMP:0007156 ! growth rate phenotype + +[Term] +id: MCO:0000402 +name: D82G variant of GyrA +xref: colombos:gyrA_b2231.D82G_VARIANT +is_a: MCO:0000051 ! gene variant mutant +property_value: IAO:0000119 "PMID: 15535862" xsd:string +property_value: MCO:0000190 "D82G susbtitution in GyrA" xsd:string +property_value: MCO:0000851 "A variant mutant in which aspartic acid in position 82 of the GyrA protein is replaced by tryptophan. It is resistant to 0.8 ΞΌg/ml of norfloxacin and causes elevated levels of gyrA and gyrB mRNA in vivo and lowers supercoiling activity of DNA gyrase in vitro in E. coli K12 strain MG1655 obtained from the ATCC." xsd:string + +[Term] +id: MCO:0000403 +name: Hha13D6 variant of Hha +xref: colombos:hha_b0460.13D6_VARIANT +is_a: MCO:0000051 ! gene variant mutant +property_value: IAO:0000119 "PMID: 21255366" xsd:string +property_value: MCO:0000851 "a gene variant mutant that with four amino acid replacements at D22V, L40R, V42I and D48A. \n\nHha13D6 was engineered to enhance biofilm dispersal dramatically. Cells with Hha13D6 had enhanced biofilm dispersal at 24, 32 and 48 h, whereas wild-type Hha caused little dispersal after 24 h.\n\nHha13D6 induced acid resistance genes (gadABCEX and hdeABD) and several heat-shock genes including protease genes (clpB, hslOR, hslUV, htpG, ibpAB, lon, prlC and ycjF)" xsd:string + +[Term] +id: MCO:0000404 +name: Hha24E9 variant of Hha +xref: colombos:hha_b0460.24E9_VARIANT +is_a: MCO:0000051 ! gene variant mutant +property_value: IAO:0000119 "PMID: 21255366" xsd:string +property_value: MCO:0000851 "a gene variant mutant with one substitution: K62X.\n\nHha24E9 decreases biofilm formation fourfold compared with wild-type Hha in E. coli BW25113 hha. Hha24E9 reduces biofilm formation by inducing acid resistance, glycerol-3-phosphate metabolism and phosphonate metabolism." xsd:string + +[Term] +id: MCO:0000405 +name: 133 variant of FhlA +xref: colombos:fhlA_b2731.133_VARIANT +is_a: MCO:0000051 ! gene variant mutant +property_value: IAO:0000119 PMID:19581479 xsd:string +property_value: MCO:0000851 "a FhlA variant mutant with six amino acid replacements at Q11H, L14V, Y177F, K245R, M288K, and I342F. Created through random mutagenesis using error-prone PCR over the whole gene, as well as over the fhlA region encoding the first 388 amino acids of the 692-amino-acid protein. It was evolved to increase H2 production of E. coli JW2701-1(pVSC133). This is achieved by increasing transcription of all of the genes activated by FhlA (the FHL complex)." xsd:string + +[Term] +id: MCO:0000406 +name: K57N variant of H-NS +xref: colombos:hns_b1237.K57N_VARIANT +is_a: MCO:0000051 ! gene variant mutant +property_value: IAO:0000119 PMID:21255333 xsd:string +property_value: MCO:0000851 "a H-NS variant mutant with a single substitution at K57N. Created by error prone PCR.It was selected for 10 fold reduction of biofilm formation and observed that this is achieved through interaction with NAPs Cnu and StpA in E. coli BW25113. H-NS K57N enhanced the excision of defective E. coli prophage Rac." xsd:string + +[Term] +id: MCO:0000407 +name: 2-1 variant of MqsR +xref: colombos:mqsR_b3022.2-1_VARIANT +is_a: MCO:0000051 ! gene variant mutant +property_value: IAO:0000119 PMID:22221537 xsd:string +property_value: MCO:0000851 "a MqsR variant mutant that has two amino acid replacements at K3N and N31Y. Created through random mutagenesis by error prone PCR and confirmed by reduced cell growth in LB culture in shake flasks in of E. coli BW25113.This amino acid substitutions increase MqsR 2-1 stability without affecting its function, which results in increased toxicity relative to the wild type MqsR (part of the toxin antitoxin system MqsR/MqsA)" xsd:string + +[Term] +id: MCO:0000408 +name: kanamycin 30Β΅g/mL +xref: colombos:KANAMYCIN\:30Β΅g/ml +is_a: CHEBI:6104 ! kanamycin +disjoint_from: MCO:0000409 ! kanamycin 5Β΅g/mL + +[Term] +id: MCO:0000409 +name: kanamycin 5Β΅g/mL +xref: colombos:KANAMYCIN\:5Β΅g/ml +is_a: CHEBI:6104 ! kanamycin + +[Term] +id: MCO:0000410 +name: sodium benzoate 0.5% vol/vol +xref: colombos:SODIUM_BENZOATE\:0+0.5%_vol/vol +is_a: CHEBI:113455 ! sodium benzoate + +[Term] +id: MCO:0000411 +name: CORM 3 100 Β΅M +xref: colombos:CORM-3\:100uM +is_a: CHEBI:137081 ! CORM 3 + +[Term] +id: MCO:0000412 +name: indole-3-acetic acid 0.5mM +xref: colombos:IAA\:0.5mM +is_a: CHEBI:16411 ! indole-3-acetic acid + +[Term] +id: MCO:0000413 +name: carbon dioxide 5% VOL +xref: colombos:CO2\:5%VOL +is_a: CHEBI:16526 ! carbon dioxide + +[Term] +id: MCO:0000414 +name: galactose 4 g/L +xref: colombos:GALACTOSE\:4g/L +is_a: CHEBI:28260 ! galactose + +[Term] +id: MCO:0000415 +name: lactose 0.15% +xref: colombos:LACTOSE\:0.15% +is_a: CHEBI:17716 ! lactose + +[Term] +id: MCO:0000416 +name: glycine betaine 1mM +xref: colombos:GLYCINE_BETAINE\:1mM +is_a: CHEBI:17750 ! glycine betaine + +[Term] +id: MCO:0000417 +name: gentamycin 5Β΅g/mL +xref: colombos:GENTAMICIN\:5Β΅g/ml +is_a: CHEBI:17833 ! gentamycin + +[Term] +id: MCO:0000418 +name: cefotaxime 0.13Β΅g/ml +xref: colombos:CEFOTAXIME\:0.13Β΅g/ml +is_a: CHEBI:204928 ! cefotaxime + +[Term] +id: MCO:0000419 +name: mevalonate 0.01 M +xref: colombos:MEVALONATE\:0.01M +is_a: CHEBI:25350 ! mevalonate +disjoint_from: MCO:0000420 ! mevalonate 0.02 M + +[Term] +id: MCO:0000420 +name: mevalonate 0.02 M +xref: colombos:MEVALONATE\:0.02M +is_a: CHEBI:25350 ! mevalonate + +[Term] +id: MCO:0000421 +name: peroxynitrite 300 Β΅M +xref: colombos:PEROXYNITRITE\:300Β΅M +is_a: CHEBI:25941 ! peroxynitrite + +[Term] +id: MCO:0000422 +name: amoxicillin 1 ΞΌg/mL +xref: colombos:AMOXICILLIN\:1ΞΌg/ml +is_a: CHEBI:2676 ! amoxicillin + +[Term] +id: MCO:0000423 +name: glyphosate 0.2 M +xref: colombos:GLYPHOSATE\:0.2M +is_a: CHEBI:27744 ! glyphosate + +[Term] +id: MCO:0000424 +name: cisplatin 150 Β΅M +xref: colombos:CISPLATIN\:150uM +is_a: CHEBI:27899 ! cisplatin + +[Term] +id: MCO:0000425 +name: dimethyl sulfoxide 1 Β΅g/ml +is_a: CHEBI:28262 ! dimethyl sulfoxide + +[Term] +id: MCO:0000426 +name: butan-1-ol 0.8% vol/vol +xref: colombos:BUTANOL\:0.8volume_% +is_a: CHEBI:28885 ! butan-1-ol +disjoint_from: MCO:0000427 ! butan-1-ol 0.9% vol/vol + +[Term] +id: MCO:0000427 +name: butan-1-ol 0.9% vol/vol +xref: colombos:BUTANOL\:0.9volume_% +is_a: CHEBI:28885 ! butan-1-ol + +[Term] +id: MCO:0000428 +name: butan-1-ol 1% vol/vol +xref: colombos:BUTANOL\:1volume_% +is_a: CHEBI:28885 ! butan-1-ol + +[Term] +id: MCO:0000429 +name: isobutanol 0.5% vol/vol +xref: colombos:ISOBUTANOL\:0.5%volume/vo +is_a: CHEBI:46645 ! isobutanol +disjoint_from: MCO:0000430 ! isobutanol 1% vol/vol + +[Term] +id: MCO:0000430 +name: isobutanol 1% vol/vol +xref: colombos:ISOBUTANOL\:1%volume/vo +is_a: CHEBI:46645 ! isobutanol + +[Term] +id: MCO:0000431 +name: azlocillin 10 ΞΌg/mL +xref: colombos:AZLOCILLIN\:10ΞΌg/ml +is_a: CHEBI:2956 ! azlocillin + +[Term] +id: MCO:0000432 +name: potassium cyanide 100 Β΅M +xref: colombos:KCN\:100Β΅M +is_a: CHEBI:33191 ! potassium cyanide + +[Term] +id: MCO:0000433 +name: cefsulodin 10 Β΅g/mL +xref: colombos:CEFSULODIN\:10Β΅g/ml +is_a: CHEBI:3507 ! cefsulodin +disjoint_from: MCO:0000434 ! cefsulodin 60 Β΅g/mL + +[Term] +id: MCO:0000434 +name: cefsulodin 60 Β΅g/mL +xref: colombos:CEFSULODIN\:60Β΅g/ml +is_a: CHEBI:3507 ! cefsulodin + +[Term] +id: MCO:0000435 +name: enrofloxacin 0.125 Β΅g/ml +xref: colombos:ENROFLOXACINE\:0.125Β΅g/ml +is_a: CHEBI:35720 ! enrofloxacin +disjoint_from: MCO:0000436 ! enrofloxacin 128 Β΅g/ml + +[Term] +id: MCO:0000436 +name: enrofloxacin 128 Β΅g/ml +xref: colombos:ENROFLOXACINE\:128Β΅g/ml +is_a: CHEBI:35720 ! enrofloxacin + +[Term] +id: MCO:0000437 +name: mannose 1% +xref: colombos:MANOSE\:+1% +xref: colombos:MANOSE\:1% +is_a: CHEBI:37684 ! mannose + +[Term] +id: MCO:0000438 +name: erythromycin 0.075 g/L +xref: colombos:ERYTHROMYCIN\:0.075_g/L +is_a: CHEBI:48923 ! erythromycin + +[Term] +id: MCO:0000439 +name: mecillinam 0.03 Β΅g/ml +xref: colombos:MECILLINAM\:0.03Β΅g/ml +is_a: CHEBI:51208 ! mecillinam +disjoint_from: MCO:0000440 ! mecillinam 0.3 Β΅g/ml + +[Term] +id: MCO:0000440 +name: mecillinam 0.3 Β΅g/ml +xref: colombos:MECILLINAM\:0.3Β΅g/ml +is_a: CHEBI:51208 ! mecillinam + +[Term] +id: MCO:0000441 +name: bicozamycin 100 mcg/ml +xref: colombos:BICYCLOMYCIN\:100mcg/ml +is_a: CHEBI:60584 ! bicozamycin +disjoint_from: MCO:0000442 ! bicozamycin 10 mcg/ml + +[Term] +id: MCO:0000442 +name: bicozamycin 10 mcg/ml +xref: colombos:BICYCLOMYCIN\:10mcg/ml +is_a: CHEBI:60584 ! bicozamycin + +[Term] +id: MCO:0000443 +name: bicozamycin 25 mcg/ml +xref: colombos:BICYCLOMYCIN\:25mcg/ml +is_a: CHEBI:60584 ! bicozamycin + +[Term] +id: MCO:0000444 +name: isopropyl beta-D-thiogalactopyranoside 1 mM +xref: colombos:IPTG\:1mM +is_a: CHEBI:61448 ! isopropyl beta-D-thiogalactopyranoside +disjoint_from: MCO:0000445 ! isopropyl beta-D-thiogalactopyranoside 2 mM + +[Term] +id: MCO:0000445 +name: isopropyl beta-D-thiogalactopyranoside 2 mM +xref: colombos:IPTG\:2mM +is_a: CHEBI:61448 ! isopropyl beta-D-thiogalactopyranoside + +[Term] +id: MCO:0000446 +name: serine hydroxamate 0.5mg/ml +xref: colombos:SHX\:0.5mg/ml +is_a: CHEBI:75494 ! serine hydroxamate + +[Term] +id: MCO:0000447 +name: isopentenol 0.2% vol/vol +xref: colombos:ISOPENTENOL\:0.2vol% +is_a: CHEBI:77922 ! isopentenol + +[Term] +id: MCO:0000448 +name: ampicillin 20 Β΅g/mL +xref: colombos:AMPICILIN\:20Β΅g/ml +is_a: CHEBI:28971 ! ampicillin +disjoint_from: MCO:0000449 ! ampicillin 5 Β΅g/mL + +[Term] +id: MCO:0000449 +name: ampicillin 5 Β΅g/mL +xref: colombos:AMPICILIN\:5Β΅g/ml +is_a: CHEBI:28971 ! ampicillin + +[Term] +id: MCO:0000450 +name: hydrogen peroxide 0.01 mM +xref: colombos:H2O2\:0.01mM +is_a: CHEBI:16240 ! hydrogen peroxide + +[Term] +id: MCO:0000451 +name: nrdB overexpression mutant +xref: colombos:nrdB_b2235.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which nrdB is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000452 +name: umuD overexpression mutant +xref: colombos:umuD_b1183.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which umuD is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000453 +name: recA overexpression mutant +xref: colombos:recA_b2699.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which recA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000454 +name: cpxR overexpression mutant +xref: colombos:cpxR_b3912.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which cpxR is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000455 +name: nupC overexpression mutant +xref: colombos:nupC_b2393.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which nupC is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000456 +name: galF overexpression mutant +xref: colombos:galF_b2042.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which galF is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000457 +name: accA overexpression mutant +xref: colombos:accA_b0185.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which accA is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000458 +name: mcrB overexpression mutant +xref: colombos:mcrB_b4346.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which mcrB is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000459 +name: menC overexpression mutant +xref: colombos:menC_b2261.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which menC is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000460 +name: cspF overexpression mutant +xref: colombos:cspF_b1558.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which cspF is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000461 +name: dpiA overexpression mutant +xref: colombos:dpiA_b0620.OVEREXPRESSION +xref: colombos:dpiA_b0620.OVEREXPRESSIONx2 +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which dpiA is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000462 +name: accC overexpression mutant +xref: colombos:accC_b3256.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which accC is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000463 +name: ruvA overexpression mutant +xref: colombos:ruvA_b1861.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which ruvA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000464 +name: minD overexpression mutant +xref: colombos:minD_b1175.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which minD is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000465 +name: uspA overexpression mutant +xref: colombos:uspA_b3495.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which uspA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000466 +name: folA overexpression mutant +xref: colombos:folA_b0048.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which folA is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000467 +name: hlpA overexpression mutant +xref: colombos:hlpA.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which hlpA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000468 +name: xylR overexpression mutant +xref: colombos:xylR.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which xylR is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000469 +name: pyrC overexpression mutant +xref: colombos:pyrC_b1062.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which pyrC is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000470 +name: ghoS overexpression mutant +xref: colombos:ghoS_b4128.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which ghoS is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000471 +name: ihfB overexpression mutant +xref: colombos:ihfB_b0912.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which ihfB is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000472 +name: yebF overexpression mutant +xref: colombos:yebF_b1847.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which yebF is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000473 +name: fadR overexpression mutant +xref: colombos:fadR_b1187.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which fadR is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000474 +name: dinP overexpression mutant +xref: colombos:dinP_b0231.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which dinP is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000475 +name: nrdA overexpression mutant +xref: colombos:nrdA_b2234.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which nrdA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000476 +name: holD overexpression mutant +xref: colombos:holD_b4372.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which holD is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000477 +name: fklB overexpression mutant +xref: colombos:fklB_b4207.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which fklB is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000478 +name: rpoS overexpression mutant +xref: colombos:rpoS_b2741.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which rpoS is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000479 +name: mqsR overexpression mutant +xref: colombos:mqsR_b3022.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which mqsR is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000480 +name: gyrI overexpression mutant +xref: colombos:gyrI_b2009.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which gyrI is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000481 +name: greB overexpression mutant +xref: colombos:greB_b3406.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which greB is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000482 +name: mprA overexpression mutant +def: "an overexpression mutant in which mprA is expressed at higher levels than the wild type" [] +xref: colombos:emrR.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000190 "emrR overexpression mutant" xsd:string + +[Term] +id: MCO:0000483 +name: dinI overexpression mutant +xref: colombos:dinI_b1061.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which dinI is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000484 +name: relE overexpression mutant +xref: colombos:relE_b1563.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which relE is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000485 +name: mqsA overexpression mutant +xref: colombos:mqsA_b3021.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which mqsA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000486 +name: rpoH overexpression mutant +xref: colombos:rpoH_b3461.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which rpoH is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000487 +name: yoeB overexpression mutant +xref: colombos:yoeB_b4539.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which yoeB is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000488 +name: rimI overexpression mutant +xref: colombos:rimI_b4373.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which rimI is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000489 +name: gyrA overexpression mutant +xref: colombos:gyrA_b2231.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which gyrA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000490 +name: minE overexpression mutant +xref: colombos:minE_b1174.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which minE is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000491 +name: rstB overexpression mutant +xref: colombos:rstB_b1609.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which rstB is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000492 +name: mazF overexpression mutant +xref: colombos:mazF_b2782.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which mazF is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000493 +name: dnaN overexpression mutant +xref: colombos:dnaN_b3701.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which dnaN is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000494 +name: uvrA overexpression mutant +xref: colombos:uvrA_b4058.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which uvrA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000495 +name: dnaT overexpression mutant +xref: colombos:dnaT_b4362.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which dnaT is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000496 +name: ldrA overexpression mutant +xref: colombos:ldrA_b4419.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which ldrA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000497 +name: ruvC overexpression mutant +xref: colombos:ruvC_b1863.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which ruvC is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000498 +name: sulA overexpression mutant +xref: colombos:sulA_b0958.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which sulA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000499 +name: sdiA overexpression mutant +xref: colombos:sdiA_b1916.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which sdiA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000500 +name: gcvR overexpression mutant +xref: colombos:gcvR_b2479.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which gcvR is expressed at higher levels than the wild type" xsd:string +property_value: MCO:0000851 "an overexpression mutant in which higher levels of gcvR are produced" xsd:string + +[Term] +id: MCO:0000501 +name: dnaA overexpression mutant +xref: colombos:dnaA_b3702.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which dnaA is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000502 +name: hcaR overexpression mutant +xref: colombos:hcaR_b2537.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which hcaR is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000503 +name: murI overexpression mutant +xref: colombos:murI_b3967.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which murI is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000504 +name: bglJ overexpression mutant +xref: colombos:bglJ.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which bglJ is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000505 +name: accD overexpression mutant +xref: colombos:accD_b2316.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which accD is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000506 +name: yfjF overexpression mutant +xref: colombos:yfjF_b2618.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which yfjF is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000507 +name: rraA overexpression mutant +xref: colombos:rraA_b3929.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which rraA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000508 +name: menB overexpression mutant +xref: colombos:menB_b2262.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which menB is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000509 +name: hscA overexpression mutant +xref: colombos:hscA_b2526.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which hscA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000510 +name: accB overexpression mutant +xref: colombos:accB_b3255.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which accB is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000511 +name: zipA overexpression mutant +xref: colombos:zipA_b2412.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which zipA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000512 +name: crcB overexpression mutant +xref: colombos:crcB_b0624.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which crcB is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000513 +name: sbcB overexpression mutant +xref: colombos:sbcB_b2011.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which sbcB is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000514 +name: mcrC overexpression mutant +xref: colombos:mcrC_b4345.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which mcrC is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000515 +name: lexA overexpression mutant +xref: colombos:lexA_b4043.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which lexA is expressed at higher levels than in the wild type" xsd:string + +[Term] +id: MCO:0000516 +name: bcp overexpression mutant +xref: colombos:bcp_b2480.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which bcp is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000517 +name: crp overexpression mutant +xref: colombos:crp_b3357.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which crp is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000518 +name: dam overexpression mutant +xref: colombos:dam_b3387.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which dam is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000519 +name: dinJ overexpression mutant +xref: colombos:dinJ_b0226.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which dinJ is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000520 +name: hydrogen peroxide 0.3mM +xref: colombos:H2O2\:0.3mM +is_a: CHEBI:16240 ! hydrogen peroxide + +[Term] +id: MCO:0000521 +name: era overexpression mutant +xref: colombos:era_b2566.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which era is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000522 +name: fis overexpression mutant +xref: colombos:fis_b3261.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which fis is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000523 +name: hha overexpression mutant +xref: colombos:hha_b0460.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which hha is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000524 +name: lon overexpression mutant +xref: colombos:lon_b0439.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which lon is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000525 +name: rsd overexpression mutant +xref: colombos:rsd_b3995.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which rsd is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000526 +name: ybjN overexpression mutant +xref: colombos:ybjN-b0853.OVEREXPRESSION +is_a: MCO:0000041 ! overexpression mutant +property_value: MCO:0000851 "an overexpression mutant in which ybjN is expressed at higher levels than the wild type" xsd:string + +[Term] +id: MCO:0000527 +name: aceE knockout mutant +xref: colombos:aceE_b0114.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000528 +name: adiA knockout mutant +xref: colombos:adiA_b4117.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000529 +name: appY knockout mutant +xref: colombos:appY_b0564.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000530 +name: argR knockout mutant +xref: colombos:argR_b3237.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000531 +name: cadA knockout mutant +xref: colombos:cadA_b4131.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000532 +name: cadB knockout mutant +xref: colombos:cadB_b4132.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000533 +name: cnu knockout mutant +xref: colombos:cnu_b1625.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000534 +name: cpxA knockout mutant +xref: colombos:cpxA_b3911.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000535 +name: creB knockout mutant +xref: colombos:creb_b4398.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000536 +name: crl knockout mutant +xref: colombos:crl_b0240.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000537 +name: cueO knockout mutant +xref: colombos:cueO_b0123.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000538 +name: cysB knockout mutant +xref: colombos:cysB_b1275.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000539 +name: cysQ knockout mutant +xref: colombos:cysQ_b4214.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000540 +name: dam knockout mutant +xref: colombos:dam_b3387.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000541 +name: dksA knockout mutant +xref: colombos:dksA_b0145.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000542 +name: dnaJ knockout mutant +xref: colombos:dnaJ_b0015.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000543 +name: dppA knockout mutant +xref: colombos:dppA_b3544.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000544 +name: dppB knockout mutant +xref: colombos:dppB_b3543.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000545 +name: dppC knockout mutant +xref: colombos:dppC_b3542.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000546 +name: dppD knockout mutant +xref: colombos:dppD_b3541.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000547 +name: dppF knockout mutant +xref: colombos:dppF_b3540.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000548 +name: eno knockout mutant +xref: colombos:eno_b2779.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000549 +name: fis knockout mutant +xref: colombos:fis_b3261.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000550 +name: flhC knockout mutant +xref: colombos:flhC_b1891.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000551 +name: flhD knockout mutant +xref: colombos:flhD_b1892.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000552 +name: fur knockout mutant +xref: colombos:fur_b0683.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000553 +name: gadB knockout mutant +xref: colombos:gadB_b1493.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000554 +name: gadW knockout mutant +xref: colombos:gadW_b3515.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000555 +name: gadX knockout mutant +xref: colombos:gadX_b3516.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000556 +name: gcvP knockout mutant +xref: colombos:gcvP_b2903.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000557 +name: gcvT knockout mutant +xref: colombos:gcvT_b2905.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000558 +name: grxA knockout mutant +xref: colombos:grxA_b0849.DELETION +xref: colombos:gss_b2988.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000559 +name: gss knockout mutant +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000560 +name: hda knockout mutant +xref: colombos:had_b2496.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000561 +name: hcaR knockout mutant +xref: colombos:hcaR_b2537.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000562 +name: hdeA knockout mutant +xref: colombos:hdeA_b3510.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000563 +name: hdeB knockout mutant +xref: colombos:hdeB_b3509.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000564 +name: hfq knockout mutant +xref: colombos:hfq_b4172.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000565 +name: hha knockout mutant +xref: colombos:hha_b0460.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000566 +name: hmp knockout mutant +xref: colombos:hmp_b2552.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000567 +name: hns knockout mutant +xref: colombos:hns_b1237.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000568 +name: hslJ knockout mutant +xref: colombos:hslJ_b1379.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000569 +name: ihfA knockout mutant +xref: colombos:ihfa_b1712.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000570 +name: iscR knockout mutant +xref: colombos:iscR_b2531.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000571 +name: kdpE knockout mutant +xref: colombos:kdpE_b0694.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000572 +name: ldcC knockout mutant +xref: colombos:ldcC_b0186.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000573 +name: lexA knockout mutant +xref: colombos:lexA3.DELETION +xref: colombos:lexA_b4043.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000574 +name: lon knockout mutant +xref: colombos:lon_b0439.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000575 +name: lsrK knockout mutant +xref: colombos:lsrK_b1511.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000576 +name: lsrR knockout mutant +xref: colombos:lsrR_b1512.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000577 +name: luxS knockout mutant +xref: colombos:luxS_b2687.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000578 +name: mazF knockout mutant +xref: colombos:mazF_b2782.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000579 +name: melR knockout mutant +xref: colombos:melR_b4118.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000580 +name: metJ knockout mutant +xref: colombos:metJ_b3938.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000581 +name: mgrR knockout mutant +xref: colombos:mgrR_b4698.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000582 +name: mnmE knockout mutant +xref: colombos:mnmE_b3706.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000583 +name: mntR knockout mutant +xref: colombos:mntR_b0817.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000584 +name: mqsR knockout mutant +xref: colombos:mqsR_b3022.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000585 +name: mutS knockout mutant +xref: colombos:mutS_b2733.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000586 +name: narP knockout mutant +xref: colombos:narP_b2193.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000587 +name: narX knockout mutant +xref: colombos:narX_b1222.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000588 +name: norR knockout mutant +xref: colombos:norR_b2709.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000589 +name: nusA knockout mutant +xref: colombos:nusA_b3169.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000590 +name: nusG knockout mutant +xref: colombos:nusG_b3982.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000591 +name: pgi knockout mutant +xref: colombos:pgi_b4025.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000592 +name: phoB knockout mutant +xref: colombos:phoB_b0399.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000593 +name: phoH knockout mutant +xref: colombos:phoH_b1020.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000594 +name: phoP knockout mutant +xref: colombos:phoP_b1130.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000595 +name: phoQ knockout mutant +xref: colombos:phoQ_b1129.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000596 +name: phoU knockout mutant +xref: colombos:phoU_b3724.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000597 +name: pnp knockout mutant +xref: colombos:pnp_b3164.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000598 +name: ppsA knockout mutant +xref: colombos:ppsA_b1702.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000599 +name: ptsN knockout mutant +xref: colombos:ptsN_b3204.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000600 +name: qor knockout mutant +xref: colombos:qor_b4051.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000601 +name: qseB knockout mutant +xref: colombos:qseB_b3025.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000602 +name: qseC knockout mutant +xref: colombos:qseC_b3026.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000603 +name: recA knockout mutant +xref: colombos:recA_b2699.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000604 +name: recE knockout mutant +xref: colombos:recE_b1350.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000605 +name: rhlB knockout mutant +xref: colombos:rhlB_b3780.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000606 +name: ribB knockout mutant +xref: colombos:ribB_b3041.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000607 +name: rne knockout mutant +xref: colombos:rne_b1084.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000608 +name: rng knockout mutant +xref: colombos:rng_b3247.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000609 +name: rpoN knockout mutant +xref: colombos:rpoN_b3202.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000610 +name: rraA knockout mutant +xref: colombos:rraA_b3929.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000611 +name: rseA knockout mutant +xref: colombos:rseA_b2572.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000612 +name: rutR knockout mutant +xref: colombos:rutR_b1013.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000613 +name: seqA knockout mutant +xref: colombos:seqA_b0687.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000614 +name: sgrR knockout mutant +xref: colombos:sgrR_b0069.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000615 +name: sgrS knockout mutant +xref: colombos:sgrS_b4577.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000616 +name: speA knockout mutant +xref: colombos:speA_b2938.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000617 +name: speB knockout mutant +xref: colombos:speB_b2937.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000618 +name: speC knockout mutant +xref: colombos:speC_b2965.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000619 +name: speD knockout mutant +xref: colombos:speD_b0120.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000620 +name: speE knockout mutant +xref: colombos:speE_b0121.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000621 +name: speF knockout mutant +xref: colombos:speF_b0693.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000622 +name: spy knockout mutant +xref: colombos:spy_b1743.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000623 +name: stpA knockout mutant +xref: colombos:stpA_b2669.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000624 +name: sucA knockout mutant +xref: colombos:sucA_b0726.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000625 +name: sucB knockout mutant +xref: colombos:sucB_b0727.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000626 +name: tnaA knockout mutant +xref: colombos:tnaA_b3708.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000627 +name: trpE knockout mutant +xref: colombos:trpE_b1264.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000628 +name: trpR knockout mutant +xref: colombos:trpR_b4393.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000629 +name: ubiE knockout mutant +xref: colombos:ubiE_b3833.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000630 +name: ycaD knockout mutant +xref: colombos:ycaD_b0898.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000631 +name: yceB knockout mutant +xref: colombos:yceB_b1063.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000632 +name: yceP knockout mutant +xref: colombos:yceP_b1060.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000633 +name: ycfR knockout mutant +xref: colombos:ycfR_b1112.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000634 +name: ychH knockout mutant +xref: colombos:ychH_b1205.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000635 +name: ydcR knockout mutant +xref: colombos:ydcR_b1439.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000636 +name: ygiN knockout mutant +xref: colombos:ygiN_b3029.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000637 +name: ygiW knockout mutant +xref: colombos:ygiW_b3024.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000638 +name: yjbJ knockout mutant +xref: colombos:yjbJ_b4045.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000639 +name: yjiR knockout mutant +xref: colombos:yjiR_b4340.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000640 +name: yliH knockout mutant +xref: colombos:yliH_b0836.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000641 +name: ymgB knockout mutant +xref: colombos:ymgB_b1166.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000642 +name: yncC knockout mutant +xref: colombos:yncC_b1450.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000643 +name: yqhC knockout mutant +xref: colombos:yqhC-b3010.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000644 +name: cobB knockout mutant +xref: colombos:cobB-b1120.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000645 +name: nsrR knockout mutant +xref: colombos:nsrR-b4178.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000646 +name: patZ knockout mutant +xref: colombos:patZ-b2584.DELETION +xref: colombos:pflB.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000647 +name: mazE knockout mutant +xref: colombos:mazE-b2783.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000648 +name: bdcA knockout mutant +xref: colombos:yjgI-b4249.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000190 "yjgI knockout mutant" xsd:string + +[Term] +id: MCO:0000649 +name: ybjN knockout mutant +xref: colombos:ybjN-b0853.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000650 +name: yjjP knockout mutant +xref: colombos:yjjP.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000651 +name: bglJ knockout mutant +xref: colombos:bglJ.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000652 +name: trpA knockout mutant +xref: colombos:trpA.b1260.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000653 +name: yjjQ knockout mutant +xref: colombos:yjjQ.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000654 +name: rcsB knockout mutant +xref: colombos:rcsB.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000655 +name: rimO knockout mutant +xref: colombos:rimO.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000656 +name: pflB knockout mutant +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000657 +name: ycaO knockout mutant +xref: colombos:ycaO.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000658 +name: ldhA knockout mutant +xref: colombos:ldhA.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000659 +name: leuO knockout mutant +xref: colombos:leuO.DELETION +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000660 +name: tabA knockout mutant +xref: colombos:yjgk.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000190 "yjgK knockout mutant" xsd:string + +[Term] +id: MCO:0000661 +name: glrR knockout mutant +xref: colombos:qseF.DELETION +is_a: MCO:0000042 ! knockout mutant +property_value: MCO:0000190 "qseF knockout mutant" xsd:string + +[Term] +id: MCO:0000662 +name: human urine +xref: colombos:MEDIUM.HOST_INDIVIDUAL +xref: colombos:MEDIUM.HUMAN_URINE +xref: colombos:MEDIUM.REAL_HUMAN +is_a: UBERON:0001088 ! urine + +[Term] +id: MCO:0000663 +name: MOPS rich medium +xref: colombos:MEDIUM.MOPS_RICH +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000867 NCBITaxon:83333 ! experimental process Escherichia coli K-12 + +[Term] +id: MCO:0000664 +name: ammonia fiber expansion corn stover hydrolysate +def: "a hydrolysate prepared from corn stover pretreated by ammonia fiber expansion" [] +xref: colombos:MEDIUM.ACSH +xref: colombos:MEDIUM.ACSH\:+1 +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000867 NCBITaxon:83333 ! experimental process Escherichia coli K-12 +property_value: IAO:0000119 "PMID: 22389370" xsd:string +property_value: MCO:0000190 "ACSH" xsd:string +property_value: MCO:0000190 "Ammonia fiber expansion (AFEX) corn stover hydrolysate (ACSH)" xsd:string +property_value: MCO:0000190 "ammonia-pretreated corn stover hydrolysate" xsd:string + +[Term] +id: MCO:0000665 +name: hydrogen peroxide 1 mM +xref: colombos:H2O2\:+1mM +xref: colombos:H2O2\:1mM +is_a: CHEBI:16240 ! hydrogen peroxide + +[Term] +id: MCO:0000666 +name: synH medium +def: "an artificial medium with a defined chemical composition designed to mimic AFEX-pretreated corn stover hydrolysate (ACSH)" [] +xref: colombos:MEDIUM.SynH +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000867 NCBITaxon:83333 ! experimental process Escherichia coli K-12 +property_value: IAO:0000119 "PMID: 25177315" xsd:string +property_value: MCO:0000094 "Water (∼700 ml) \n6.25 ml of 1.6 M KPO4 buffer \npH 7.2\n20 ml of 1.5 M ammonium sulfate\n20 ml of 2.25 M KCl\n1.25 M NaCl\n20 ml of a 50X amino acid stock (except tyrosine)\n20 ml of 8.75 mM tyrosine dissolved in 50 mM HCl\n50 ml of 1 mM each adenine, guanine, cytosine and uracil dissolved in 10 mM KOH\n10 ml of vitamin stock (1 mM each thiamine, calcium pantothenate, p-aminobenzoic acid, p- hydroxybenzoic acid, and 2,3-dihydroxybenzoic acid)\n1 ml of a 1000X stock of micronutrients (ZnCl2 , MnCl2 , CuCl2 , CoCl2 , H3 BO3 , (NH4 )6 Mo7 O24 , and FeCl3 )\n1 ml of 1 M magnesium chloride\n1ml of 90mM CaCl2\n10ml of 1M sodium formate\n10mM sodium nitrate\n50 mM sodium succinate\n1 ml of 3 M glycerol\n1 ml of 500 mM lactic acid\n1 ml of 700 mM glycine betaine\n700 mM choline chloride\n200 mM DL-carnitine (osmolytes)\n5.61 g acetamide\n2.71 g sodium acetate\n3.3 g sodium pyruvate\n2.94 g sodium citrate\n1.34 g DL-malic acid\n60 g D-glucose\n30 g D-xylose\n5.1 g D-arabinose\n1.48 g D-fructose\n1.15 g D- galactose\n468 mg D-mannose\nAfter adjusting to pH 7 with 10 N NaOH, the final volume is adjusted to 1L." xsd:string +property_value: MCO:0000190 "synthetic hydrolisate" xsd:string + +[Term] +id: MCO:0000667 +name: lignotoxins medium +def: "an artificial medium made up of inhibitory compounds that are lignin derivatives resulting from pretreatment and enzymatic hydrolysis of lignocellulose (lignotoxins)" [] +xref: colombos:MEDIUM.LT +is_a: MICRO:0000067 ! microbiological culture medium +property_value: IAO:0000119 "PMID: 25177315\nPMID: 22389370" xsd:string +property_value: MCO:0000094 "531 mg feruloyl amide\n448 mg coumaroyl amide\n173 mg p-coumaric acid\n69 mg ferulic acid\n69 mg hydroxymethylfurfural\n59 mg benzoic acid\n15 mg syringic acid\n14 mg cinnamic acid\n15 mg vanillic acid\n2 mg caffeic acid\n20 mg vanillin\n30 mg syringaldehyde\n24 mg 4-hydroxybenzaldehyde\n3.4 mg 4-hydroxybenzophenone" xsd:string +property_value: MCO:0000190 "aromatic inhibitors medium" xsd:string +property_value: MCO:0000190 "LC-derived inhibitors medium" xsd:string +property_value: MCO:0000190 "lignocellulose toxins medium" xsd:string +property_value: MCO:0000190 "lignocellulose-derived inhibitors medium" xsd:string + +[Term] +id: MCO:0000668 +name: osmoprotectants medium +xref: colombos:MEDIUM.OSMOPROTECTANTS +is_a: MICRO:0000067 ! microbiological culture medium +property_value: IAO:0000119 "PMID: 25177315" xsd:string +property_value: MCO:0000190 "an artificial medium made up of compounds that protect against osmotic stress (e.g., glycine betaine, choline chloride, and DL-carnitine)" xsd:string +property_value: MCO:0000190 "osmolytes medium" xsd:string + +[Term] +id: MCO:0000669 +name: OD536 +def: "an optical density that specifies the amount of light of 536 nm of wavelenght the bearer is able to transmit" [] +xref: colombos:OD536 +is_a: MCO:0000077 ! optical density + +[Term] +id: MCO:0000670 +name: OD536 of 0.1 +xref: colombos:OD536\:0.1 +is_a: MCO:0000669 ! OD536 + +[Term] +id: MCO:0000671 +name: OD550 +def: "an optical density that specifies the amount of light of 550 nm of wavelenght the bearer is able to transmit" [] +xref: colombos:OD550 +is_a: MCO:0000077 ! optical density + +[Term] +id: MCO:0000672 +name: OD600 of 0.03 +xref: colombos:OD600\:0.03 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000673 +name: OD600 of 0.05 +xref: colombos:OD600\:0.05 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000674 +name: OD600 of 0.1 +xref: colombos:OD600\:0.1 +xref: colombos:OD600\:0.5-0.4 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000675 +name: OD600 of 0.15 +xref: colombos:OD600\:0.15 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000676 +name: OD600 of 0.2 +xref: colombos:OD600\:0.2 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000677 +name: OD600 of 0.35 +xref: colombos:OD600\:0.35 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000678 +name: OD600 of 0.6 +xref: colombos:OD600\:0.5+0.1 +xref: colombos:OD600\:0.6 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000679 +name: OD600 of 0.7 +xref: colombos:OD600\:0.7 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000680 +name: OD600 of 0.8 +xref: colombos:OD600\:0.8 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000681 +name: OD600 of 0.9 +xref: colombos:OD600\:0.9 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000682 +name: OD600 of 0.95 +xref: colombos:OD600\:0.95 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000683 +name: OD600 of 1.0 +xref: colombos:OD600\:0.5+0.5 +xref: colombos:OD600\:1.0 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000684 +name: OD600 of 1.1 +xref: colombos:OD600\:1.1 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000685 +name: OD600 of 1.6 +xref: colombos:OD600\:1.6 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000686 +name: OD600 of 1.7 +xref: colombos:OD600\:0.5+1.2 +xref: colombos:OD600\:1.7 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000687 +name: OD600 of 10 +xref: colombos:OD600\:10 +xref: colombos:OD600\:4+6 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000688 +name: OD600 of 15 +xref: colombos:OD600\:15 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000689 +name: OD600 of 2 +xref: colombos:OD600\:2 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000690 +name: OD600 of 2.4 +xref: colombos:OD600\:2.4 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000691 +name: OD600 of 4 +xref: colombos:OD600\:4 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000692 +name: OD600 of 1.3 +xref: colombos:OD600\:0.5+0.8 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000693 +name: OD600 of 2.7 +xref: colombos:OD600\:0.5+2.2 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000694 +name: OD600 of 4.5 +xref: colombos:OD600\:0.5+4.0 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000695 +name: OD600 of 4.7 +xref: colombos:OD600\:0.5+4.2 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000696 +name: OD600 of 4.8 +xref: colombos:OD600\:0.5+4.3 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000697 +name: 20.0 C +xref: colombos:TEMPERATURE\:20Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000698 +name: 25.0 C +xref: colombos:TEMPERATURE\:25Β°C +xref: colombos:TEMPERATURE\:37-12Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000699 +name: 26.0 C +xref: colombos:TEMPERATURE\:26Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000700 +name: 33.0 C +xref: colombos:TEMPERATURE\:33Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000701 +name: 34.0 C +xref: colombos:TEMPERATURE\:34Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000702 +name: 35.7 C +xref: colombos:TEMPERATURE\:35.7Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000703 +name: 23.0 C +xref: colombos:TEMPERATURE\:30-7Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000704 +name: 16.0 C +xref: colombos:TEMPERATURE\:37-21Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000705 +name: 15.0 C +xref: colombos:TEMPERATURE\:37-22Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000706 +name: hydrogen peroxide 2mM +xref: colombos:H2O2\:2mM +is_a: CHEBI:16240 ! hydrogen peroxide + +[Term] +id: MCO:0000707 +name: 43.0 C +xref: colombos:TEMPERATURE\:30+13Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000708 +name: 50.0 C +xref: colombos:TEMPERATURE\:37+13Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000709 +name: 58.0 C +xref: colombos:TEMPERATURE\:37+21Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000710 +name: 60.0 C +xref: colombos:TEMPERATURE\:37+23Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000711 +name: 71.0 C +xref: colombos:TEMPERATURE\:37+34Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000712 +name: 42.0 C +xref: colombos:TEMPERATURE\:30+12Β°C +xref: colombos:TEMPERATURE\:37+5Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000713 +name: 45.0 C +xref: colombos:TEMPERATURE\:37+8Β°C +is_a: PATO:0000146 ! temperature + +[Term] +id: MCO:0000714 +name: pH 5.5 +xref: colombos:pH\:5.5 +xref: colombos:pH\:7-1.5 +is_a: ZECO:0000201 ! acidic + +[Term] +id: MCO:0000715 +name: pH 4.5 +xref: colombos:pH\:7-2.5 +is_a: ZECO:0000201 ! acidic + +[Term] +id: MCO:0000716 +name: pH 5.7 +xref: colombos:pH\:5.3+0.4 +xref: colombos:pH\:7-1.3 +is_a: ZECO:0000201 ! acidic + +[Term] +id: MCO:0000717 +name: pH 8.5 +xref: colombos:pH\:7+1.5 +is_a: ZECO:0000202 ! basic + +[Term] +id: MCO:0000718 +name: pH 8.7 +xref: colombos:pH\:5+3.7 +is_a: ZECO:0000202 ! basic + +[Term] +id: MCO:0000719 +name: pH 11.8 +xref: colombos:pH\:7+4.8 +is_a: ZECO:0000202 ! basic + +[Term] +id: MCO:0000720 +name: pH 3.5 +xref: colombos:pH\:3.5 +is_a: ZECO:0000201 ! acidic + +[Term] +id: MCO:0000721 +name: pH 5.3 +xref: colombos:pH\:5.3 +is_a: ZECO:0000201 ! acidic + +[Term] +id: MCO:0000722 +name: pH 7.4 +xref: colombos:pH\:7.4 +is_a: ZECO:0000202 ! basic + +[Term] +id: MCO:0000723 +name: hydrogen peroxide 5.88mM +xref: colombos:H2O2\:5.88mM +is_a: CHEBI:16240 ! hydrogen peroxide + +[Term] +id: MCO:0000724 +name: hydrogen peroxide 10mM +xref: colombos:H2O2\:10mM +is_a: CHEBI:16240 ! hydrogen peroxide + +[Term] +id: MCO:0000725 +name: hydrogen peroxide 20mM +xref: colombos:H2O2\:20mM +is_a: CHEBI:16240 ! hydrogen peroxide + +[Term] +id: MCO:0000726 +name: hydrogen peroxide 30mM +xref: colombos:H2O2\:30mM +is_a: CHEBI:16240 ! hydrogen peroxide + +[Term] +id: MCO:0000727 +name: N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine 10 Β΅M +xref: colombos:TPEN\:10Β΅M +is_a: CHEBI:88217 ! N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine + +[Term] +id: MCO:0000728 +name: pyruvate 2 g/L +xref: colombos:PYRUVATE\:2g/L +is_a: CHEBI:15361 ! pyruvate + +[Term] +id: MCO:0000729 +name: acetate 2 g/L +xref: colombos:ACETATE\:2_g/L +is_a: CHEBI:30089 ! acetate + +[Term] +id: MCO:0000730 +name: alanine 2 g/L +xref: colombos:ALANINE\:2_g/L +is_a: CHEBI:16449 ! alanine + +[Term] +id: MCO:0000731 +name: autoinducer-2 0.1 mM +xref: colombos:AUTO_INDUCER_2\:0.1mM +is_a: CHEBI:40646 ! autoinducer-2 + +[Term] +id: MCO:0000732 +name: benzalconium chloride 50 ppm +xref: colombos:BENZALKONIUM_CHLORIDE\:50ppm +is_a: CHEBI:3020 ! benzalkonium chloride + +[Term] +id: MCO:0000733 +name: CCCP 800 Β΅M +xref: colombos:CCCP\:800Β΅M +is_a: CHEBI:3259 ! CCCP + +[Term] +id: MCO:0000734 +name: ethanol 1.5% vol/vol +xref: colombos:ETHANOL\:1.5%_volume/v +is_a: CHEBI:16236 ! ethanol +disjoint_from: MCO:0000735 ! ethanol 15% vol/vol + +[Term] +id: MCO:0000735 +name: ethanol 15% vol/vol +xref: colombos:ETHANOL\:15%_volume/v +is_a: CHEBI:16236 ! ethanol + +[Term] +id: MCO:0000736 +name: ethanol 2% vol/vol +xref: colombos:ETHANOL\:2%_volume/v +is_a: CHEBI:16236 ! ethanol + +[Term] +id: MCO:0000737 +name: ethanol 20% vol/vol +xref: colombos:ETHANOL\:20%_volume/v +is_a: CHEBI:16236 ! ethanol + +[Term] +id: MCO:0000738 +name: ethanol 3% vol/vol +xref: colombos:ETHANOL\:3%_volume/v +is_a: CHEBI:16236 ! ethanol + +[Term] +id: MCO:0000739 +name: ethanol 4% vol/vol +xref: colombos:ETHANOL\:4%_volume/v +is_a: CHEBI:16236 ! ethanol + +[Term] +id: MCO:0000740 +name: formate 0.02 M +xref: colombos:FORMATE\:0.02M +is_a: CHEBI:15740 ! formate + +[Term] +id: MCO:0000741 +name: iron(2+) sulfate (anhydrous) 50 Β΅M +xref: colombos:FeSO4\:50uM +is_a: CHEBI:75832 ! iron(2+) sulfate (anhydrous) + +[Term] +id: MCO:0000743 +name: glucose 8.8 g/L +xref: colombos:GLUCOSE\:8.8_g/L +is_a: CHEBI:17234 ! glucose + +[Term] +id: MCO:0000744 +name: glycerol 0.001 g/L +xref: colombos:GLYCEROL\:0.001g/L +is_a: CHEBI:17754 ! glycerol + +[Term] +id: MCO:0000745 +name: glycerol 0.1 g/L +xref: colombos:GLYCEROL\:+0.1g/L +is_a: CHEBI:17754 ! glycerol + +[Term] +id: MCO:0000746 +name: glycerol 0.4 g/L +xref: colombos:GLYCEROL\:+4_g/Lg/L +xref: colombos:GLYCEROL\:0.4g/L +xref: colombos:GLYCEROL\:4g/L +is_a: CHEBI:17754 ! glycerol + +[Term] +id: MCO:0000747 +name: glycerol 0.68 g/L +xref: colombos:GLYCEROL\:0.68g/L +is_a: CHEBI:17754 ! glycerol + +[Term] +id: MCO:0000748 +name: glycerol 1 g/L +xref: colombos:GLYCEROL\:+1g/L +is_a: CHEBI:17754 ! glycerol + +[Term] +id: MCO:0000749 +name: glycerol 2 g/L +xref: colombos:GLYCEROL\:2g/L +is_a: CHEBI:17754 ! glycerol + +[Term] +id: MCO:0000750 +name: glycerol 4 g/L +is_a: CHEBI:17754 ! glycerol + +[Term] +id: MCO:0000751 +name: indole 0.1mM +is_a: CHEBI:35581 ! indole +disjoint_from: MCO:0000752 ! indole 0.5M + +[Term] +id: MCO:0000752 +name: indole 0.5M +xref: colombos:INDOLE\:0.5M +is_a: CHEBI:35581 ! indole + +[Term] +id: MCO:0000753 +name: indole 1 mM +xref: colombos:INDOLE\:0.1mM +xref: colombos:INDOLE\:1mM +is_a: CHEBI:35581 ! indole + +[Term] +id: MCO:0000754 +name: mitomycin C 0.3 Β΅M +xref: colombos:MMC\:0.3Β΅g/ml +is_a: CHEBI:27504 ! mitomycin C + +[Term] +id: MCO:0000755 +name: manganese(II) chloride 0.00001 M +xref: colombos:MnCl2\:0.00001M +is_a: CHEBI:63041 ! manganese(II) chloride + +[Term] +id: MCO:0000756 +name: nalidixic acid 10Β΅g/ml +xref: colombos:NALIDIXIC_ACID\:10Β΅g/ml +is_a: CHEBI:100147 ! nalidixic acid + +[Term] +id: MCO:0000757 +name: nalidixic acid 100Β΅g/ml +xref: colombos:NALIDIXIC_ACID\:100Β΅g/ml +is_a: CHEBI:100147 ! nalidixic acid + +[Term] +id: MCO:0000758 +name: nalidixic acid 2 Β΅g/ml +xref: colombos:NALIDIXIC_ACID\:2Β΅g/ml +is_a: CHEBI:100147 ! nalidixic acid + +[Term] +id: MCO:0000759 +name: nitrate 0.01 M +xref: colombos:NITRATE\:0.01M +is_a: CHEBI:17632 ! nitrate + +[Term] +id: MCO:0000760 +name: nitrate 0.02 M +xref: colombos:NITRATE\:0.02M +is_a: CHEBI:17632 ! nitrate + +[Term] +id: MCO:0000761 +name: norfloxacin 0.025 Β΅g/ml +xref: colombos:NORFLOXACIN\:0.025Β΅g/ml +is_a: CHEBI:100246 ! norfloxacin +disjoint_from: MCO:0000762 ! norfloxacin 0.05 Β΅g/ml + +[Term] +id: MCO:0000762 +name: norfloxacin 0.05 Β΅g/ml +xref: colombos:NORFLOXACIN\:0.050Β΅g/ml +is_a: CHEBI:100246 ! norfloxacin + +[Term] +id: MCO:0000763 +name: norfloxacin 0.075 Β΅g/ml +xref: colombos:NORFLOXACIN\:0.075Β΅g/ml +is_a: CHEBI:100246 ! norfloxacin + +[Term] +id: MCO:0000764 +name: norfloxacin 1 Β΅g/mL +xref: colombos:NORFLOXACIN\:1.000Β΅g/ml +is_a: CHEBI:100246 ! norfloxacin + +[Term] +id: MCO:0000765 +name: norfloxacin 2.5 Β΅g/ml +xref: colombos:NORFLOXACIN\:2.5Β΅g/ml +is_a: CHEBI:100246 ! norfloxacin + +[Term] +id: MCO:0000766 +name: sodium chloride 0.3 M +xref: colombos:NaCl\:0.3M +is_a: CHEBI:26710 ! sodium chloride + +[Term] +id: MCO:0000767 +name: sodium chloride 0.55 M +xref: colombos:NaCl\:0.55M +is_a: CHEBI:26710 ! sodium chloride + +[Term] +id: MCO:0000768 +name: sodium chloride 1 M +xref: colombos:NaCl\:1M +is_a: CHEBI:26710 ! sodium chloride + +[Term] +id: MCO:0000769 +name: sodium chloride 1.37 M +xref: colombos:NaCl\:1.37M +is_a: CHEBI:26710 ! sodium chloride + +[Term] +id: MCO:0000770 +name: sodium chloride 2 M +xref: colombos:NaCl\:2M +is_a: CHEBI:26710 ! sodium chloride + +[Term] +id: MCO:0000771 +name: sodium chloride 3.5 M +xref: colombos:NaCl\:2+1.5M +is_a: CHEBI:26710 ! sodium chloride + +[Term] +id: MCO:0000772 +name: sodium chloride 4 M +xref: colombos:NaCl\:4M +is_a: CHEBI:26710 ! sodium chloride + +[Term] +id: MCO:0000773 +name: sodium chloride 4.5 M +xref: colombos:NaCl\:2+2.5M +is_a: CHEBI:26710 ! sodium chloride + +[Term] +id: MCO:0000774 +name: sodium chloride 5.5 M +xref: colombos:NaCl\:2+3.5M +is_a: CHEBI:26710 ! sodium chloride + +[Term] +id: MCO:0000775 +name: sodium chloride 5 M +xref: colombos:NaCl\:2+3M +is_a: CHEBI:26710 ! sodium chloride + +[Term] +id: MCO:0000776 +name: sodium chloride 10 M +xref: colombos:NaCl\:10M +is_a: CHEBI:26710 ! sodium chloride + +[Term] +id: MCO:0000777 +name: octanoic acid 10 mM +xref: colombos:OCTANOIC_ACID\:10mM +is_a: CHEBI:28837 ! octanoic acid + +[Term] +id: MCO:0000778 +name: pantothenic acid 1mg/L +xref: colombos:PANTOTHENIC_ACID\:1mg/L +is_a: CHEBI:7916 ! pantothenic acid + +[Term] +id: MCO:0000779 +name: sucrose 1250 mM +xref: colombos:SUCROSE\:1250mM +is_a: CHEBI:17992 ! sucrose + +[Term] +id: MCO:0000780 +name: tellurite 0.05 Β΅g/ml +xref: colombos:TELLURITE\:0.05Β΅g/ml +is_a: CHEBI:30477 ! tellurite +disjoint_from: MCO:0000781 ! tellurite 16 Β΅gml + +[Term] +id: MCO:0000781 +name: tellurite 16 Β΅gml +xref: colombos:TELLURITE\:0.5Β΅g/ml +is_a: CHEBI:30477 ! tellurite + +[Term] +id: MCO:0000782 +name: tetracycline 16 Β΅g/mL +xref: colombos:TETRACYCLINE\:16Β΅g/ml +is_a: CHEBI:27902 ! tetracycline + +[Term] +id: MCO:0000783 +name: tetracycline 0.25 Β΅g/mL +xref: colombos:TETRACYCLINE\:0.25Β΅g/ml +is_a: CHEBI:27902 ! tetracycline + +[Term] +id: MCO:0000784 +name: iron dichloride 0.1 mM +is_a: CHEBI:30812 ! iron dichloride + +[Term] +id: MCO:0000785 +name: titanium dioxide nanoparticle 100 mg/L +xref: colombos:NANOPARTICLES.TiO2\:100mg/l +is_a: CHEBI:51050 ! titanium dioxide nanoparticle + +[Term] +id: MCO:0000786 +name: bicozamycin 20 Β΅g/mL +is_a: CHEBI:60584 ! bicozamycin +property_value: MCO:0000190 "bicyclomycin 20 Β΅g/mL" xsd:string + +[Term] +id: MCO:0000787 +name: L-arginine 1 g/L +is_a: CHEBI:16467 ! L-arginine + +[Term] +id: MCO:0000788 +name: ammonium chloride 0.1% +is_a: CHEBI:31206 ! ammonium chloride + +[Term] +id: MCO:0000789 +name: leucine 10 mM +is_a: CHEBI:25017 ! leucine + +[Term] +id: MCO:0000790 +name: ompR knockout mutant +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000791 +name: epitope tagged variant mutant +is_a: MCO:0000051 ! gene variant mutant + +[Term] +id: MCO:0000792 +name: fur-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000793 +name: 8myc tagged variant mutant +is_a: MCO:0000791 ! epitope tagged variant mutant + +[Term] +id: MCO:0000794 +name: chebi_requests +comment: this is a temporal class used to keep terms that we have to request from chebi +is_a: CHEBI:24431 ! chemical entity + +[Term] +id: MCO:0000811 +name: arcA-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000812 +name: argR-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000813 +name: fis-3xflag +is_a: MCO:0000830 ! 3xflag tagged variant mutant + +[Term] +id: MCO:0000814 +name: fnr-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000815 +name: fnr-3xflag +is_a: MCO:0000830 ! 3xflag tagged variant mutant + +[Term] +id: MCO:0000816 +name: gadE-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000817 +name: gadW-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000818 +name: gadX-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000819 +name: hns-3xflag +is_a: MCO:0000830 ! 3xflag tagged variant mutant + +[Term] +id: MCO:0000820 +name: lrp-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000821 +name: nsrR-3xflag +is_a: MCO:0000830 ! 3xflag tagged variant mutant + +[Term] +id: MCO:0000822 +name: ompR-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000823 +name: oxyR-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000824 +name: sirA-flag +is_a: MCO:0000829 ! flag tagged variant mutant + +[Term] +id: MCO:0000825 +name: soxR-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000826 +name: soxS-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000827 +name: trpR-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000828 +name: uvrY-flag +is_a: MCO:0000829 ! flag tagged variant mutant + +[Term] +id: MCO:0000829 +name: flag tagged variant mutant +is_a: MCO:0000791 ! epitope tagged variant mutant + +[Term] +id: MCO:0000830 +name: 3xflag tagged variant mutant +is_a: MCO:0000791 ! epitope tagged variant mutant + +[Term] +id: MCO:0000831 +name: gadE knockout mutant +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000832 +name: ompR knockout mutant +is_a: MCO:0000042 ! knockout mutant + +[Term] +id: MCO:0000833 +name: plasmid PK8263 (16 Β΅M IPTG-induced fnr) +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000834 +name: plasmid PK8263 (8 Β΅M IPTG-induced fnr) +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000835 +name: plasmid PK8263 (4 Β΅M IPTG-induced fnr) +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000836 +name: W2 minimal medium +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000866 NCBITaxon:83333 ! treatment Escherichia coli K-12 + +[Term] +id: MCO:0000837 +name: OD600 from 0.3 to 0.6 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000838 +name: OD600 from 0.3 to 0.7 +is_a: MCO:0000059 ! OD600 + +[Term] +id: MCO:0000839 +name: OD650 from 0.3 to 0.4 +is_a: MCO:0000069 ! OD650 + +[Term] +id: MCO:0000840 +name: OD650 from 0.3 to 0.5 +is_a: MCO:0000069 ! OD650 + +[Term] +id: MCO:0000841 +name: OD650 from 0.3 to 0.6 +is_a: MCO:0000069 ! OD650 + +[Term] +id: MCO:0000842 +name: adenine 100 mg/L +is_a: CHEBI:16708 ! adenine + +[Term] +id: MCO:0000843 +name: 70% N2, 5% CO2, and O2 25% +is_a: MCO:0000078 ! aeration + +[Term] +id: MCO:0000844 +name: arginine 1 g/L +is_a: CHEBI:29016 ! arginine + +[Term] +id: MCO:0000845 +name: glutamine 2 g/L +is_a: CHEBI:28300 ! glutamine + +[Term] +id: MCO:0000846 +name: sodium chloride 0.5% +is_a: CHEBI:26710 ! sodium chloride + +[Term] +id: MCO:0000847 +name: salicylic acid 5 Β΅M +is_a: CHEBI:16914 ! salicylic acid + +[Term] +id: MCO:0000848 +name: tryptophan 20 mg/L +is_a: CHEBI:27897 ! tryptophan + +[Term] +id: MCO:0000849 +name: N2 95% and CO2 5% +is_a: MCO:0000078 ! aeration + +[Term] +id: MCO:0000850 +name: isopropyl beta-D-thiogalactopyranoside 5 Β΅M +is_a: CHEBI:61448 ! isopropyl beta-D-thiogalactopyranoside + +[Term] +id: MCO:0000852 +name: Escherichia coli P4X +is_a: NCBITaxon:562 ! Escherichia coli + +[Term] +id: MCO:0000853 +name: L-arginine 100 Β΅g/ml +is_a: CHEBI:16467 ! L-arginine + +[Term] +id: MCO:0000854 +name: L-methionine 100 Β΅g/ml +is_a: CHEBI:16643 ! L-methionine + +[Term] +id: MCO:0000855 +name: plasmid pT7-FLAG-4 (IPTG-induced csiR) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000856 +name: plasmid pT7-FLAG-4 (IPTG-induced nac) mutant +is_a: MCO:0000058 ! unicopy harbored plasmid mutant + +[Term] +id: MCO:0000857 +name: potassium nitrate 20 mM +is_a: CHEBI:63043 ! potassium nitrate + +[Term] +id: MCO:0000858 +name: sucrose 15% +is_a: CHEBI:17992 ! sucrose + +[Term] +id: MCO:0000861 +name: zinc depletion +is_a: MCO:0000176 ! nutrient limitation treatment + +[Term] +id: MCO:0000864 +name: carbon source +is_a: CHEBI:52211 ! physiological role + +[Term] +id: MCO:0000865 +name: nitrogen source +is_a: CHEBI:52211 ! physiological role + +[Term] +id: MCO:0000866 +name: treatment +def: "A process in which the act is intended to modify or alter some other material entity," [] +is_a: MCO:0000867 ! experimental process +property_value: external_ontology http://www.ebi.ac.uk/efo/EFO_0000727 xsd:string + +[Term] +id: MCO:0000867 +name: experimental process +def: "A process performed as part of an experiment or wider study, i.e. intentionally designed." [] +is_a: BFO:0000015 ! process +property_value: external_ontology http://www.ebi.ac.uk/efo/EFO_0002694 xsd:string +property_value: IAO:0000118 "Experiment" xsd:string + +[Term] +id: MCO:0000868 +name: OD660 +is_a: MCO:0000077 ! optical density + +[Term] +id: MCO:0000869 +name: OD660 of 0.5 +is_a: MCO:0000868 ! OD660 + +[Term] +id: MCO:0000870 +name: acetate 0.2% +is_a: CHEBI:30089 ! acetate + +[Term] +id: MCO:0000871 +name: cra-8myc +is_a: MCO:0000793 ! 8myc tagged variant mutant + +[Term] +id: MCO:0000872 +name: fructose 0.2% +is_a: CHEBI:28757 ! fructose + +[Term] +id: MCO:0000873 +name: rifampicin 150 mg/ml +is_a: CHEBI:28077 ! rifampicin + +[Term] +id: MCO:0000875 +name: arginine 2 g/L +is_a: CHEBI:29016 ! arginine + +[Term] +id: MCO:0000876 +name: paraquat 250 Β΅M +is_a: CHEBI:34905 ! paraquat +property_value: MCO:0000190 "250 uM paraquat (PQ)" xsd:string + +[Term] +id: MCO:0000877 +name: rifampicin 50 Β΅M +is_a: CHEBI:28077 ! rifampicin +property_value: MCO:0000190 "rifampicin 50 uM" xsd:string + +[Term] +id: MCO:0000878 +name: OD600 from 0.27 to 0.33 +is_a: MCO:0000059 ! OD600 +property_value: MCO:0000190 "OD600 = 0.3 Β± 0.03" xsd:string +property_value: MCO:0000190 "OD600 of 0.3 Β± 0.03" xsd:string + +[Term] +id: MCO:0000879 +name: OD650 from 0.3 to 0.6 +is_a: MCO:0000069 ! OD650 +property_value: MCO:0000190 "OD650 = 0.3-0.6" xsd:string + +[Term] +id: MCO:0000880 +name: 500 ml flask +is_a: NCIT:C96144 ! flask +property_value: MCO:0000190 "500-ml flask" xsd:string + +[Term] +id: MCO:0000881 +name: minimal defined medium +def: "a defined microbiological culture medium that provides the minimum requirements (e.g., inorganic salts, but no amino acids) needed for growth of a particular bacterium or cell." [] +is_a: MICRO:0000068 ! defined microbiological culture medium +property_value: IAO:0000119 "adapted from \nhttps://medical-dictionary.thefreedictionary.com/minimal+medium" xsd:string +property_value: MCO:0000190 "minimal medium" xsd:string +property_value: MCO:0000190 "MM" xsd:string + +[Term] +id: MCO:0000882 +name: rich medium +def: "Nutrient media contain all the elements that most bacteria need for growth and are non-selective, so they are used for the general cultivation and maintenance of bacteria kept in laboratory culture collections" [] +is_a: MICRO:0000067 ! microbiological culture medium +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Growth_medium xsd:string +property_value: MCO:0000190 "nutrient medium" xsd:string + +[Term] +id: MCO:0000883 +name: agitation +def: "moving back and forth or with an irregular, rapid, or violent action" [] +is_a: OBI:0000094 ! material processing +property_value: IAO:0000119 https://www.merriam-webster.com/dictionary/agitation xsd:string + +[Term] +id: MCO:0000884 +name: agitation at 250 rpm +is_a: MCO:0000883 ! agitation +property_value: MCO:0000190 "250 rpm" xsd:string + +[Term] +id: MCO:0000885 +name: agitation for 20 min +is_a: MCO:0000883 ! agitation + +[Term] +id: MCO:0000886 +name: agitation for 30 min +is_a: MCO:0000883 ! agitation + +[Term] +id: MCO:0000894 +name: biological entity +def: "A biological entity is a heterogeneous substance that contains genomic material or is the product of a biological process." [] +is_a: BFO:0000030 ! object +property_value: external_ontology http://semanticscience.org/resource/SIO_010046 xsd:string +property_value: isDefinedBy http://semanticscience.org/ontology/sio.owl + +[Term] +id: MCO:0000895 +name: biological quality +def: "A biological quality is a quality held by a biological entity." [] +is_a: BFO:0000019 ! quality +property_value: external_ontology http://semanticscience.org/resource/SIO_000475 xsd:string +property_value: isDefinedBy http://semanticscience.org/ontology/sio.owl + +[Term] +id: MICRO:0000067 +name: microbiological culture medium +synonym: "culture media" BROAD [] +synonym: "growth media" BROAD [] +synonym: "growth medium" BROAD [] +synonym: "media" BROAD [] +synonym: "medium" BROAD [] +is_a: MCO:0000015 ! artificial medium +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "A culture medium used to select for, grow, and maintain prokaryotic microorganisms. Can be in either liquid (broth) or solidified (e.g. with agar) forms." xsd:string + +[Term] +id: MICRO:0000068 +name: defined microbiological culture medium +is_a: MICRO:0000067 ! microbiological culture medium +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "A chemically defined microbiological culture medium where all chemicals used are known. Does not contain any plant, animal, or microbiological cell extracts." xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "defined media" xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "defined medium" xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "defined mineral medium" xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "mineral media" xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "mineral medium" xsd:string + +[Term] +id: MICRO:0000115 +name: prokaryotic metabolic process +is_a: GO:0044710 ! single-organism metabolic process +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "A single-organism metabolic process that is present in a prokaryotic metabolically differentiated cell." xsd:string + +[Term] +id: MICRO:0000116 +name: chemical mixture, serving as microbiological medium ingredients +is_a: CHEBI:60004 ! mixture +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "A solid or liquid mixture of chemicals which are used as ingredients in microbiological culture media used to grow and propogate prokaryotic microorganisms." xsd:string + +[Term] +id: MICRO:0000164 +name: organic chemical mixture +is_a: MICRO:0000116 ! chemical mixture, serving as microbiological medium ingredients +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "Organic compounds or mixtures of organic compounds added to culture media to support growth or metabolism of a microorganism." xsd:string + +[Term] +id: MICRO:0000167 +name: undefined organic chemical mixture +is_a: MICRO:0000164 ! organic chemical mixture +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "A mixture of dry or liquid organic compounds added to culture media to support growth or metabolism of a microorganism. Because the exact composition of the mixture is unknown or uncharacterized, it is referred to as \"undefined\"." xsd:string + +[Term] +id: MICRO:0000170 +name: microbiological medium ingredient, derived from extracts of microbial organisms +is_a: MICRO:0001370 ! microbiological medium ingredient, derived from aqueous extracts +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "Undefined mixtures of complex organic compounds deriving from the aqueous extraction (an extraction using water, such as hot water or steam) of microbial (prokaryotic or microbial eukaryotic) cells. Used in the cultivation of microorganisms.\n" xsd:string + +[Term] +id: MICRO:0000172 +name: microbiological medium ingredient, derived from extracts of proteinaceous material +is_a: MICRO:0000167 ! undefined organic chemical mixture +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "An undefined mixture of complex organic compounds (peptides, sometimes with additional undefined vitamins and cofactors) derived from enzymatic, acid, or base digests of protein from plant or animal sources. Used in the cultivation of microorganisms.\n" xsd:string + +[Term] +id: MICRO:0000173 +name: microbiological medium ingredient, derived from chemical hydrolysis of protein +is_a: MICRO:0000172 ! microbiological medium ingredient, derived from extracts of proteinaceous material +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "Undefined mixtures of complex organic compounds derived (typically amino acids) from the acid hydrolysis of animal or plant protein added to culture media." xsd:string + +[Term] +id: MICRO:0000174 +name: microbiological medium ingredient, derived from enzymatic hydrolysis of protein +is_a: MICRO:0000172 ! microbiological medium ingredient, derived from extracts of proteinaceous material +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "Protein hydrolysates, also called peptones, are the result of the enzymatic hydrolysis of protein." xsd:string +property_value: IAO:0000119 "BD Bionutrients Technical Manual (3rd edition revised)." xsd:string + +[Term] +id: MICRO:0000182 +name: tryptone +synonym: "Bacto Tryptone" NARROW [] +synonym: "Bacto-Tryptone" NARROW [] +synonym: "Proteose Tryptone" NARROW [] +is_a: MICRO:0001366 ! casein hydrolysate +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "An enzymatic hydrolysate of casein (a milk protein from cow's milk, Bos taurus) made using the hydrolytic enzyme trypsin, used for the culturing of microorganisms." xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "bacto-tryptone" xsd:string +property_value: IAO:0000119 "From BD Bionutrients(TM) Techical Manual (3rd edition, revised):\n\nBactoβ„’ Tryptone is a pancreatic digest of casein. It was developed by Difco Laboratories while investigating a peptone particularly suitable for the elaboration of indole by bacteria. It is also notable for the absence of detectable levels of carbohydrates.\n\nAsh content is 6.6%\nNaCl content is 0.0%" xsd:string +property_value: IAO:0000119 "From: Wikipedia:Tryptone\n\nTryptone is the assortment of peptides formed by the digestion of casein by the protease trypsin." xsd:string + +[Term] +id: MICRO:0000184 +name: casamino acids +is_a: MICRO:0000173 ! microbiological medium ingredient, derived from chemical hydrolysis of protein +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "An acid hydrolysate of casein (milk protein from cow's milk, Bos taurus), used for the culturing of microorganisms." xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "acid digest of casein" xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "Casein Hydrolysate" xsd:string +property_value: IAO:0000119 "From BD Bionutrients Technical Manual (3rd edition revised):\n\nBactoβ„’ Casamino Acids is an acid hydrolysate of casein, prepared according to the method described by Mueller and Miller. The method described, reduces the sodium chloride and iron content of the hydrolyzed casein. This hydrolyzed casein, supplemented with inorganic salts, growth factors, cystine, maltose and an optimum amount of iron was used by Mueller and Miller to prepare diptheria toxin. Bacto Casamino Acids duplicate this specially treated hydrolyzed casein.\n\nAsh content is 18.3%\nNaCl content is 12.1%" xsd:string + +[Term] +id: MICRO:0000201 +name: yeast extract +is_a: MICRO:0000170 ! microbiological medium ingredient, derived from extracts of microbial organisms +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "A water-soluble extract of autolyzed yeast (Saccharomyces cerevisiae), used for the culturing of microorganisms." xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "Yeast extrakt" xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "Yeastrel" xsd:string +property_value: IAO:0000119 "From BD Bionutrients Technical Manual (3rd edition revised): \n\nBactoβ„’ Yeast Extract is one of the most complete and versatile fermentation bionutrients available. It is an important ingredient for the microbiological assay of vitamins. Yeast extract is also of value in the assay of antibiotics. B factor, a growth substance necessary for the production of rifampin in a Nocardia sp., can be isolated from yeast extract\n\nAsh content is 11.2%\nNaCl content is 0.1%" xsd:string +property_value: IAO:0000119 "From www.SigmaAldrich.com: \n\nA water soluble extract of autolyzed yeast cells. Yeast extract is a mixture of amino acids, peptides, water soluble vitamins and carbohydrates and can be used as additive for culture media." xsd:string + +[Term] +id: MICRO:0000465 +name: microbiological medium ingredient, derived from enzymatic hydrolysis of milk protein +is_a: MICRO:0000174 ! microbiological medium ingredient, derived from enzymatic hydrolysis of protein +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "Protein hydrolysates, also called peptones, are the result of the enzymatic hydrolysis of milk proteins (such as casein or lactalbumin)." xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "peptone from casein" xsd:string + +[Term] +id: MICRO:0000558 +name: MacConkey agar +synonym: "MacConkey medium" BROAD [] +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000867 NCBITaxon:83333 ! experimental process Escherichia coli K-12 +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "An organic-rich, selective solid microbiological culture medium that contains peptones, lactose, bile salts, crystal violet, and a pH indicator (neutral red). The bile salts inhibit swarming in Proteus spp., and the crystal violet inhibits growth of some Gram-positive bacteria. Lactose fermentation lowers the pH, resulting in colonies that are red or pink in color, and causes the bile salts to precipitate. Non-lactose fermenters that can deaminate amino acids in the peptone release ammonia, which causes the pH to increase (and thus the colonies appear white)." xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "MAC" xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "Mac-Conkey agar" xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "Maccongkey agar" xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "Macconkey agar" xsd:string +property_value: IAO:0000119 "From MacConkey Agar (Becton-Dickinson Difco and BBL Manual of Microbiological Culture Media, 2nd edition):\n\nIntended Use\n\nMacConkey agars are slightly selective and differential plating media mainly used for the detection and isolation of gram-negative organisms from clinical,1-3 dairy,4 food,5-7 water,8 pharmaceutical, 9-11 cosmetic,6,7 and other industrial sources. MacConkey Agar is used for isolating and differentiating lactose-fermenting from lactose-nonfermenting gram-negative enteric bacilli.\n\nPrinciples of the Procedure\nPeptones are sources of nitrogen and other nutrients. Yeast extract is a source of trace elements, vitamins, amino acids and carbon. Lactose is a fermentable carbohydrate. When lactose is fermented, a local pH drop around the colony causes a color change in the pH indicator (neutral red) and bile precipitation. Bile salts, bile salts no. 3, oxgall and crystal violet are selective agents that inhibit growth of gram-positive organisms. Sodium chloride maintains osmotic balance in the medium. Magnesium sulfate is a source of divalent cations. Agar is the solidifying agent.\n\nFormulae\nDifcoβ„’ MacConkey Agar\nApproximate Formula* Per Liter\nPancreatic Digest of Gelatin....................................... 17.0 g\nPeptones (meat and casein).......................................... 3.0 g\nLactose...................................................................... 10.0 g\nBile Salts No. 3............................................................. 1.5 g\nSodium Chloride.......................................................... 5.0 g\nAgar.......................................................................... 13.5 g\nNeutral Red.................................................................. 0.03 g\nCrystal Violet............................................................... 1.0 mg\n\npH 7.1 Β± 0.2\n\nDifcoβ„’ MacConkey Agar Base\nConsists of the same ingredients without the lactose.\n\nBBLβ„’ MacConkey Agar\nApproximate Formula* Per Liter\nPancreatic Digest of Gelatin....................................... 17.0 g\nPeptones (meat and casein).......................................... 3.0 g\nLactose...................................................................... 10.0 g\nBile Salts...................................................................... 1.5 g\nSodium Chloride.......................................................... 5.0 g\nAgar.......................................................................... 13.5 g\nNeutral Red.................................................................. 0.03 g\nCrystal Violet............................................................... 1.0 mg\n\npH 7.1 Β± 0.2\n" xsd:string + +[Term] +id: MICRO:0000562 +name: LB medium +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000867 NCBITaxon:83333 ! experimental process Escherichia coli K-12 +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "An organic-rich, liquid microbiological culture medium containing tryptone, yeast extract, and sodium chloride. Used to cultivate Escherichia coli." xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "LB broth" xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "Luria broth" xsd:string +property_value: IAO:0000119 "From: LB Broth, Miller (Becton-Dickinson Difco and BBL Manual of Microbiological Culture Media, 2nd edition):\n\nIntended Use\nLB Agar, Miller and LB Broth, Miller (Luria-Bertani) are used for maintaining and propagating Escherichia coli in molecular microbiology procedures.\n\nPrinciples of the Procedure\nPeptone provides nitrogen and carbon. Vitamins (including B vitamins) and certain trace elements are provided by yeast extract. Sodium ions for transport and osmotic balance are provided by sodium chloride. Agar is the solidifying agent in LB Agar, Miller.\n\nFormulae\nDifcoβ„’ LB Agar, Miller\nApproximate Formula* Per Liter\nTryptone.................................................................... 10.0 g\nYeast Extract................................................................ 5.0 g\nSodium Chloride........................................................ 10.0 g\nAgar.......................................................................... 15.0 g\nDifcoβ„’ LB Broth, Miller\nConsists of the same ingredients without the agar.\n*Adjusted and/or supplemented as required to meet performance criteria.\n\npH 7.0 Β± 0.2" xsd:string + +[Term] +id: MICRO:0001366 +name: casein hydrolysate +is_a: MICRO:0000465 ! microbiological medium ingredient, derived from enzymatic hydrolysis of milk protein +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "Microbiological medium ingredient, derived from enzymatic hydrolysis of milk protein. An enzymatic hydrolysate of casein (a milk protein from cow's milk, Bos taurus), used for the culturing of microorganisms." xsd:string + +[Term] +id: MICRO:0001370 +name: microbiological medium ingredient, derived from aqueous extracts +is_a: MICRO:0000167 ! undefined organic chemical mixture +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "Undefined mixture of complex organic compounds derived from animal, fish, plant materials or soil, produced by the process of aqueous extraction (extraction using water, such as hot water). Used in the cultivation of microorganisms.\n" xsd:string + +[Term] +id: MICRO:0001526 +name: (an)aerobiosis +is_a: MICRO:0000115 ! prokaryotic metabolic process +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "A prokaryotic metabolic process where a microorganism grows (undergoes cell division) in the presence or absence of oxygen." xsd:string + +[Term] +id: MICRO:0001528 +name: anaerobiosis +is_a: MICRO:0001526 ! (an)aerobiosis +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "A prokaryotic metabolic process where the organism grows in the absence of oxygen." xsd:string + +[Term] +id: MICRO:0001531 +name: aerobiosis +is_a: MICRO:0001526 ! (an)aerobiosis +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "A prokaryotic metabolic process where the organism grows in the presence of oxygen." xsd:string + +[Term] +id: MICRO:0002316 +name: DSMZ Medium 382 +is_a: MICRO:0000067 ! microbiological culture medium +relationship: MCO:0000866 NCBITaxon:83333 ! treatment Escherichia coli K-12 +property_value: curator_notes "DSM strains:\n" xsd:string +property_value: http://purl.obolibrary.org/obo/createdBy "Carrine Blank" xsd:string +property_value: http://purl.obolibrary.org/obo/definition "An organic-rich, liquid culture medium comprised of 10 x M9 salts, magnesium sulfate, calcium chloride, thiamine hydrochloride, glucose, and proline." xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "M9 minimal medium" xsd:string +property_value: http://purl.obolibrary.org/obo/has_exact_synonym "Minimal medium M9" xsd:string +property_value: IAO:0000119 "http://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium382.pdf\n\n382. MINERAL MEDIUM M9 for E. coli JM strains\n\n10 x M9 salts (see below) 100.0 ml\n1 M MgSO4 1.0 ml\n0.1 M CaCl2 1.0 ml\n1 M Thiamine-HCl x 2 H2O\n(filter-sterilized) 1.0 ml\nGlucose (20%) 10.0 ml\nProline 20.0 mg\nDistilled water 900.0 ml\n\nThe above solutions should be sterilized separately by filtration (thiamine, glucose) or autoclaving.\n\n10 x M9 salts (per l):\nNa2HPO4 60.0 g\nKH2PO4 30.0 g\nNH4Cl 10.0 g\nNaCl 5.0 g\n\nAdjust pH to 7.4.\n\nΒ© 2007 DSMZ GmbH - All rights reserved" xsd:string + +[Term] +id: NCBITaxon:1110693 +name: Escherichia coli str. K-12 substr. MDS42 +synonym: "Escherichia coli MDS42" EXACT equivalent_name [] +synonym: "Escherichia coli strain K-12 substrain MDS42" EXACT equivalent_name [] +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:1211845 +name: Escherichia coli MC1061 +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:1224 +name: Proteobacteria +namespace: ncbi_taxonomy +synonym: "Alphaproteobacteraeota" RELATED synonym [] +synonym: "proteobacteria" RELATED blast_name [] +synonym: "purple bacteria" EXACT common_name [] +synonym: "purple bacteria and relatives" EXACT common_name [] +synonym: "purple non-sulfur bacteria" EXACT common_name [] +synonym: "purple photosynthetic bacteria" EXACT common_name [] +synonym: "purple photosynthetic bacteria and relatives" EXACT common_name [] +xref: GC_ID:11 +xref: PMID:11321122 +xref: PMID:11542017 +xref: PMID:11837318 +xref: PMID:16280474 +xref: PMID:26654112 +is_a: NCBITaxon:2 ! Bacteria +property_value: has_rank NCBITaxon:phylum + +[Term] +id: NCBITaxon:1236 +name: Gammaproteobacteria +namespace: ncbi_taxonomy +synonym: "g-proteobacteria" RELATED blast_name [] +synonym: "gamma proteobacteria" RELATED synonym [] +synonym: "gamma subdivision" RELATED synonym [] +synonym: "gamma subgroup" RELATED synonym [] +synonym: "Proteobacteria gamma subdivision" RELATED synonym [] +synonym: "Purple bacteria, gamma subdivision" RELATED synonym [] +xref: GC_ID:11 +xref: PMID:16280474 +xref: PMID:23334881 +is_a: NCBITaxon:1224 ! Proteobacteria +property_value: has_rank NCBITaxon:class + +[Term] +id: NCBITaxon:1245474 +name: Escherichia coli ER2796 +synonym: "Escherichia coli DB24" RELATED synonym [] +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:131567 +name: cellular organisms +namespace: ncbi_taxonomy +synonym: "biota" RELATED synonym [] +xref: GC_ID:1 +is_a: NCIT:C14250 ! Organism +property_value: IAO:0000412 http://purl.obolibrary.org/obo/ncbitaxon.owl + +[Term] +id: NCBITaxon:1318715 +name: Escherichia coli BW38028 +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:1403831 +name: Escherichia coli str. K-12 substr. MC4100 +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:1420014 +name: Escherichia coli str. K-12 substr. MG1656 +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:2 +name: Bacteria +name: Bacteria +namespace: ncbi_taxonomy +synonym: "Bacteria" EXACT [] +synonym: "bacteria" RELATED blast_name [] +synonym: "eubacteria" EXACT genbank_common_name [] +synonym: "Monera" RELATED in_part [] +synonym: "not Bacteria Haeckel 1894" RELATED synonym [] +synonym: "Procaryotae" RELATED in_part [] +synonym: "Prokaryota" RELATED in_part [] +synonym: "Prokaryotae" RELATED in_part [] +synonym: "prokaryote" RELATED in_part [] +synonym: "prokaryotes" RELATED in_part [] +xref: GC_ID:11 +xref: PMID:10425795 +xref: PMID:10425796 +xref: PMID:10425797 +xref: PMID:10490293 +xref: PMID:10843050 +xref: PMID:10939651 +xref: PMID:10939673 +xref: PMID:10939677 +xref: PMID:11211268 +xref: PMID:11321083 +xref: PMID:11321113 +xref: PMID:11411719 +xref: PMID:11540071 +xref: PMID:11542017 +xref: PMID:11542087 +xref: PMID:11760965 +xref: PMID:12054223 +xref: PMID:2112744 +xref: PMID:270744 +xref: PMID:8123559 +xref: PMID:8590690 +xref: PMID:9103655 +xref: PMID:9336922 +is_a: NCBITaxon:131567 ! cellular organisms +property_value: has_rank NCBITaxon:superkingdom +property_value: IAO:0000412 http://purl.obolibrary.org/obo/ncbitaxon.owl + +[Term] +id: NCBITaxon:316385 +name: Escherichia coli str. K-12 substr. DH10B +synonym: "Escherichia coli DH10B" EXACT equivalent_name [] +synonym: "Escherichia coli str. K12 substr. DH10B" EXACT equivalent_name [] +synonym: "Escherichia coli strain K12 substrain DH10B" EXACT equivalent_name [] +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:316407 +name: Escherichia coli str. K-12 substr. W3110 +synonym: "Escherichia coli str. K12 substr. W3110" EXACT equivalent_name [] +synonym: "Escherichia coli str. W3110" EXACT equivalent_name [] +synonym: "Escherichia coli strain W3110" EXACT equivalent_name [] +synonym: "Escherichia coli W3110" RELATED synonym [] +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:511145 +name: Escherichia coli str. K-12 substr. MG1655 +synonym: "Escherichia coli MG1655" RELATED synonym [] +synonym: "Escherichia coli str. K12 substr. MG1655" EXACT equivalent_name [] +synonym: "Escherichia coli str. MG1655" EXACT equivalent_name [] +synonym: "Escherichia coli strain MG1655" EXACT equivalent_name [] +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:527799 +name: Escherichia coli LW1655F+ +synonym: "Escherichia coli str. LW1655F+" EXACT equivalent_name [] +synonym: "Escherichia coli strain LW1655F+" EXACT equivalent_name [] +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:531853 +name: Escherichia coli NC-7 +synonym: "Escherichia coli str. NC-7" EXACT equivalent_name [] +synonym: "Escherichia coli strain NC-7" EXACT equivalent_name [] +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:543 +name: Enterobacteriaceae +namespace: ncbi_taxonomy +synonym: "Enterobacteraceae" RELATED synonym [] +synonym: "gamma-3 proteobacteria" RELATED in_part [] +xref: GC_ID:11 +xref: PMID:10555323 +xref: PMID:10555334 +xref: PMID:16166704 +is_a: NCBITaxon:91347 ! Enterobacterales +property_value: has_rank NCBITaxon:family + +[Term] +id: NCBITaxon:561 +name: Escherichia +namespace: ncbi_taxonomy +synonym: "Escherchia" RELATED misspelling [] +xref: GC_ID:11 +xref: PMID:19700542 +is_a: NCBITaxon:543 ! Enterobacteriaceae +property_value: has_rank NCBITaxon:genus + +[Term] +id: NCBITaxon:562 +name: Escherichia coli +namespace: ncbi_taxonomy +alt_id: NCBITaxon:1637691 +alt_id: NCBITaxon:662101 +alt_id: NCBITaxon:662104 +synonym: "Bacillus coli" RELATED synonym [] +synonym: "Bacterium coli" RELATED synonym [] +synonym: "Bacterium coli commune" RELATED synonym [] +synonym: "E. coli" EXACT common_name [] +synonym: "Enterococcus coli" RELATED synonym [] +synonym: "Escherchia coli" RELATED misspelling [] +synonym: "Escherichia/Shigella coli" EXACT equivalent_name [] +synonym: "Eschericia coli" RELATED misspelling [] +xref: GC_ID:11 +xref: PMID:10319482 +is_a: NCBITaxon:561 ! Escherichia +property_value: has_rank NCBITaxon:species + +[Term] +id: NCBITaxon:595496 +name: Escherichia coli BW2952 +synonym: "Escherichia coli str. BW2952" EXACT equivalent_name [] +synonym: "Escherichia coli strain BW2952" EXACT equivalent_name [] +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:679895 +name: Escherichia coli BW25113 +synonym: "Escherichia coli str. BW25113" EXACT equivalent_name [] +synonym: "Escherichia coli strain BW25113" EXACT equivalent_name [] +is_a: NCBITaxon:83333 ! Escherichia coli K-12 + +[Term] +id: NCBITaxon:83333 +name: Escherichia coli K-12 +synonym: "Escherichia coli K12" EXACT equivalent_name [] +is_a: NCBITaxon:562 ! Escherichia coli + +[Term] +id: NCBITaxon:91347 +name: Enterobacterales +namespace: ncbi_taxonomy +synonym: "enterobacteria" RELATED blast_name [] +synonym: "Enterobacteriaceae and related endosymbionts" RELATED synonym [] +synonym: "Enterobacteriaceae group" RELATED synonym [] +synonym: "Enterobacteriales" RELATED synonym [] +synonym: "gamma-3 proteobacteria" RELATED in_part [] +xref: GC_ID:11 +xref: PMID:27620848 +is_a: NCBITaxon:1236 ! Gammaproteobacteria +property_value: has_rank NCBITaxon:order + +[Term] +id: NCIT:C120538 +name: cell density +def: "A measurement of the number of cells per unit volume or area." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"} +synonym: "Cell Density" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="SY", http://purl.obolibrary.org/obo/NCIT_P384="CDISC"} +synonym: "Cell Density" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +synonym: "Cell Density" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P385="SDTM-OETEST", http://purl.obolibrary.org/obo/NCIT_P384="CDISC"} +synonym: "CELLDENS" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P385="SDTM-OETESTCD", http://purl.obolibrary.org/obo/NCIT_P384="CDISC"} +is_a: OMP:0007167 ! population growth phenotype +property_value: NCIT:A8 NCIT:C117742 +property_value: NCIT:A8 NCIT:C117743 +property_value: NCIT:A8 NCIT:C61410 +property_value: NCIT:A8 NCIT:C66830 +property_value: NCIT:NHC0 "C120538" xsd:string +property_value: NCIT:P106 "Quantitative Concept" xsd:string +property_value: NCIT:P108 "Cell Density" xsd:string +property_value: NCIT:P207 "C0162339" xsd:string +property_value: NCIT:P322 "CDISC" xsd:string +property_value: NCIT:P325 "A measurement of the number of cells contained in a unit of volume." xsd:string {http://purl.obolibrary.org/obo/NCIT_P378="CDISC"} + +[Term] +id: NCIT:C120710 +name: maximum cell density +def: "The maximum value in a range of values that describe cell density." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"} +synonym: "Cell Density, Maximum" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P385="SDTM-OETEST", http://purl.obolibrary.org/obo/NCIT_P384="CDISC"} +synonym: "Cell Density, Maximum" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="SY", http://purl.obolibrary.org/obo/NCIT_P384="CDISC"} +synonym: "CELLDMAX" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P385="SDTM-OETESTCD", http://purl.obolibrary.org/obo/NCIT_P384="CDISC"} +synonym: "Maximum Cell Density" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +is_a: NCIT:C120538 ! cell density +property_value: NCIT:A8 NCIT:C117742 +property_value: NCIT:A8 NCIT:C117743 +property_value: NCIT:A8 NCIT:C61410 +property_value: NCIT:A8 NCIT:C66830 +property_value: NCIT:NHC0 "C120710" xsd:string +property_value: NCIT:P106 "Quantitative Concept" xsd:string +property_value: NCIT:P108 "Maximum Cell Density" xsd:string +property_value: NCIT:P207 "C4054569" xsd:string +property_value: NCIT:P322 "CDISC" xsd:string +property_value: NCIT:P325 "The maximum number in a group of values that represent the cell density." xsd:string {http://purl.obolibrary.org/obo/NCIT_P378="CDISC"} + +[Term] +id: NCIT:C120711 +name: minimum cell density +def: "The minimum value in a range of values that describe cell density." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"} +synonym: "Cell Density, Minimum" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="SY", http://purl.obolibrary.org/obo/NCIT_P384="CDISC"} +synonym: "Cell Density, Minimum" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P385="SDTM-OETEST", http://purl.obolibrary.org/obo/NCIT_P384="CDISC"} +synonym: "CELLDMIN" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P385="SDTM-OETESTCD", http://purl.obolibrary.org/obo/NCIT_P384="CDISC"} +synonym: "Minimum Cell Density" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +is_a: NCIT:C120538 ! cell density +property_value: NCIT:A8 NCIT:C117742 +property_value: NCIT:A8 NCIT:C117743 +property_value: NCIT:A8 NCIT:C61410 +property_value: NCIT:A8 NCIT:C66830 +property_value: NCIT:NHC0 "C120711" xsd:string +property_value: NCIT:P106 "Quantitative Concept" xsd:string +property_value: NCIT:P108 "Minimum Cell Density" xsd:string +property_value: NCIT:P207 "C4053785" xsd:string +property_value: NCIT:P322 "CDISC" xsd:string +property_value: NCIT:P325 "The minimum number in a group of values that represent the cell density." xsd:string {http://purl.obolibrary.org/obo/NCIT_P378="CDISC"} + +[Term] +id: NCIT:C120712 +name: mean cell density +def: "The arithmetic mean of a range of values that describe the cell density of an entity." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"} +synonym: "Cell Density, Mean" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P385="SDTM-OETEST", http://purl.obolibrary.org/obo/NCIT_P384="CDISC"} +synonym: "Cell Density, Mean" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="SY", http://purl.obolibrary.org/obo/NCIT_P384="CDISC"} +synonym: "CELLDMN" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P385="SDTM-OETESTCD", http://purl.obolibrary.org/obo/NCIT_P384="CDISC"} +synonym: "Mean Cell Density" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +is_a: NCIT:C120538 ! cell density +property_value: NCIT:A8 NCIT:C117742 +property_value: NCIT:A8 NCIT:C117743 +property_value: NCIT:A8 NCIT:C61410 +property_value: NCIT:A8 NCIT:C66830 +property_value: NCIT:NHC0 "C120712" xsd:string +property_value: NCIT:P106 "Quantitative Concept" xsd:string +property_value: NCIT:P108 "Mean Cell Density" xsd:string +property_value: NCIT:P207 "C4054565" xsd:string +property_value: NCIT:P322 "CDISC" xsd:string +property_value: NCIT:P325 "The mean number in a group of values that represent the cell density." xsd:string {http://purl.obolibrary.org/obo/NCIT_P378="CDISC"} + +[Term] +id: NCIT:C14250 +name: Organism +def: "A living entity." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"} +synonym: "BiologicEntity" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P384="BRIDG"} +synonym: "Organism" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +synonym: "Organism" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P384="NICHD"} +synonym: "organism" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P385="CDR0000046250", http://purl.obolibrary.org/obo/NCIT_P384="NCI-GLOSS"} +synonym: "Organismal" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="AD", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +synonym: "Organisms" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="SY", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +synonym: "Taxon" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="SY", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +is_a: MCO:0000894 ! biological entity +property_value: NCIT:A11 NCIT:C90259 +property_value: NCIT:A8 NCIT:C90259 +property_value: NCIT:NHC0 "C14250" xsd:string +property_value: NCIT:P106 "Organism" xsd:string +property_value: NCIT:P108 "Organism" xsd:string +property_value: NCIT:P207 "C0029235" xsd:string +property_value: NCIT:P322 "BRIDG" xsd:string +property_value: NCIT:P322 "NICHD" xsd:string +property_value: NCIT:P325 "A living thing, such as an animal, a plant, a bacterium, or a fungus." xsd:string {http://purl.obolibrary.org/obo/NCIT_P378="NCI-GLOSS"} +property_value: NCIT:P325 "Any individual living (or previously living) being. EXAMPLE(S): animal, human being" xsd:string {http://purl.obolibrary.org/obo/NCIT_P378="BRIDG"} +property_value: NCIT:P366 "Organisms" xsd:string +property_value: NCIT:P371 "Organism" xsd:string + +[Term] +id: NCIT:C18102 +name: Physical Phenomenon or Property +def: "A natural phenomenon involving the physics of matter and energy." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"} +synonym: "Physical Phenomenon" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="SY", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +synonym: "Physical Phenomenon or Property" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +synonym: "Physical Process" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="SY", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +synonym: "Physical Property" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="SY", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +is_a: BFO:0000015 ! process +property_value: NCIT:NHC0 "C18102" xsd:string +property_value: NCIT:P106 "Phenomenon or Process" xsd:string +property_value: NCIT:P108 "Physical Phenomenon or Property" xsd:string +property_value: NCIT:P207 "C0597237" xsd:string +property_value: NCIT:P366 "Physical_Phenomena_or_Properties" xsd:string + +[Term] +id: NCIT:C25360 +name: mutant +def: "An altered form of an individual, organism, population, or genetic character that differs from the corresponding wild type due to one or more alterations (mutations)." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"} +synonym: "Mutant" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +xref: colombos:MUTATION +is_a: MCO:0000383 ! genotype +property_value: NCIT:NHC0 "C25360" xsd:string +property_value: NCIT:P106 "Qualitative Concept" xsd:string +property_value: NCIT:P108 "Mutant" xsd:string +property_value: NCIT:P207 "C0596988" xsd:string +property_value: NCIT:P366 "Mutant" xsd:string + +[Term] +id: NCIT:C62195 +name: wild type +def: "The naturally-occurring, normal, non-mutated version of a gene or genome." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"} +synonym: "Wild Type" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +synonym: "Wild Type" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="SY", http://purl.obolibrary.org/obo/NCIT_P385="TCGA", http://purl.obolibrary.org/obo/NCIT_P386="caDSR", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +synonym: "Wildtype" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="SY", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +synonym: "WT" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="SY", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +is_a: MCO:0000383 ! genotype +property_value: NCIT:NHC0 "C62195" xsd:string +property_value: NCIT:P106 "Organism Attribute" xsd:string +property_value: NCIT:P108 "Wild Type" xsd:string +property_value: NCIT:P207 "C1883559" xsd:string +property_value: NCIT:P366 "Wild_Type" xsd:string + +[Term] +id: NCIT:C96144 +name: flask +def: "A container with a base wider than the narrow neck traditionally used for holding liquids." [] {http://purl.obolibrary.org/obo/NCIT_P378="NCI"} +synonym: "Flask" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P384="NCI"} +synonym: "Flask" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P386="Stability", http://purl.obolibrary.org/obo/NCIT_P384="FDA"} +synonym: "flask" EXACT [] {http://purl.obolibrary.org/obo/NCIT_P383="PT", http://purl.obolibrary.org/obo/NCIT_P386="SPL", http://purl.obolibrary.org/obo/NCIT_P384="FDA"} +is_a: OBI:0000967 ! container +property_value: NCIT:A8 NCIT:C133805 +property_value: NCIT:A8 NCIT:C133853 +property_value: NCIT:A8 NCIT:C54452 +property_value: NCIT:A8 NCIT:C96081 +property_value: NCIT:NHC0 "C96144" xsd:string +property_value: NCIT:P106 "Manufactured Object" xsd:string +property_value: NCIT:P108 "Flask" xsd:string +property_value: NCIT:P207 "C0872171" xsd:string +property_value: NCIT:P322 "FDA" xsd:string +property_value: NCIT:P325 "Flat bottom bottle, container or vessel." xsd:string {http://purl.obolibrary.org/obo/NCIT_P378="FDA", http://purl.obolibrary.org/obo/NCIT_P381="Stability"} + +[Term] +id: OBI:0000011 +name: planned process +alt_id: CHMO:0001840 +def: "A processual entity that realizes a plan which is the concretization of a plan specification." [] +is_a: BFO:0000015 ! process +property_value: curator_notes "6/11/9: Edited at workshop. Used to include: is initiated by an agent" xsd:string +property_value: curator_notes "This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)" xsd:string +property_value: editor_note "'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)" xsd:string +property_value: IAO:0000111 "planned process" xsd:string +property_value: IAO:0000112 "Injecting mice with a vaccine in order to test its efficacy" xsd:string +property_value: IAO:0000114 IAO:0000122 +property_value: IAO:0000117 "Bjoern Peters" xsd:string +property_value: IAO:0000119 "branch derived" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi/webService.owl +property_value: IAO:0000412 http://rsc-cmo.googlecode.com/svn/trunk/chmo.owl + +[Term] +id: OBI:0000047 +name: processed material +def: "Is a material entity that is created or changed during material processing." [] +is_a: BFO:0000040 ! material entity +property_value: IAO:0000111 "processed material" xsd:string +property_value: IAO:0000112 "Examples include gel matrices, filter paper, parafilm and buffer solutions, mass spectrometer, tissue samples" xsd:string +property_value: IAO:0000114 IAO:0000122 +property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/dron.owl +property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi.owl xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi/webService.owl + +[Term] +id: OBI:0000079 +name: culture medium +def: "a processed material that provides the needed nourishment for microorganisms or cells grown in vitro." [] +xref: colombos:MEDIUM +is_a: OBI:0000047 ! processed material +property_value: editor_note "changed from a role to a processed material based on on Aug 22, 2011 dev call. Details see the tracker item: http://sourceforge.net/tracker/?func=detail&aid=3325270&group_id=177891&atid=886178\nModification made by JZ." xsd:string +property_value: IAO:0000111 "culture medium" xsd:string +property_value: IAO:0000112 "A growth medium or culture medium is a substance in which microorganisms or cells can grow. Wikipedia, growth medium, Feb 29, 2008" xsd:string +property_value: IAO:0000114 IAO:0000120 +property_value: IAO:0000114 IAO:0000122 +property_value: IAO:0000117 "Person: Jennifer Fostel, Jie Zheng" xsd:string +property_value: IAO:0000119 "OBI" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi/webService.owl + +[Term] +id: OBI:0000094 +name: material processing +alt_id: CHMO:0001131 +alt_id: CHMO:0001267 +alt_id: CHMO:0001461 +alt_id: FIX:0000258 +def: "A planned process which results in physical changes in a specified input material" [] +def: "A planned process which results in physical changes in a specified input material." [] +synonym: "material transformations" EXACT [] +synonym: "preparative method" EXACT [] +synonym: "sample preparation" EXACT [] +synonym: "sample preparation step" EXACT [] +synonym: "sample preparative method" EXACT [] +is_a: OBI:0000011 ! planned process +property_value: IAO:0000111 "material processing" xsd:string +property_value: IAO:0000112 "A cell lysis, production of a cloning vector, creating a buffer." xsd:string +property_value: IAO:0000114 IAO:0000122 +property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string +property_value: IAO:0000117 "PERSON: Frank Gibson" xsd:string +property_value: IAO:0000117 "PERSON: Jennifer Fostel" xsd:string +property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string +property_value: IAO:0000117 "PERSON: Philippe Rocca Serra" xsd:string +property_value: IAO:0000119 "OBI branch derived" xsd:string +property_value: IAO:0000412 http://purl.obolibrary.org/obo/obi/webService.owl +property_value: IAO:0000412 http://rsc-cmo.googlecode.com/svn/trunk/chmo.owl + +[Term] +id: OBI:0000192 +name: microtiter plate +def: "A microtiter_plate is a flat plate with multiple wells used as small test tubes." [] +is_a: OBI:0000967 ! container +property_value: IAO:0000111 "microtiter plate" xsd:string +property_value: IAO:0000112 "A microtiter plate with 6, 24, 96, 384 or 1536 sample wells used in the enzyme-linked immunosorbent assay (ELISA)" xsd:string +property_value: IAO:0000114 IAO:0000122 +property_value: IAO:0000117 "Melanie Courtot" xsd:string +property_value: IAO:0000118 "microplate" xsd:string +property_value: IAO:0000119 http://en.wikipedia.org/wiki/Microtiter_plate xsd:string + +[Term] +id: OBI:0000836 +name: test tube +def: "A test tube is a device consisting of a glass or plastic tubing, open at the top, usually with a rounded U-shaped bottom which has the function to contain material" [] +is_a: OBI:0000967 ! container +property_value: IAO:0000111 "test tube" xsd:string +property_value: IAO:0000114 IAO:0000120 +property_value: IAO:0000117 "Bjoern Peters" xsd:string +property_value: IAO:0000118 "collection tube" xsd:string +property_value: IAO:0000118 "sample tube" xsd:string +property_value: IAO:0000119 http://en.wikipedia.org/wiki/Test_tube xsd:string + +[Term] +id: OBI:0000967 +name: container +def: "A device that can be used to restrict the location of material entities over time" [] +is_a: MCO:0000013 ! equipment and supplies +property_value: editor_note "03/21/2010: Added to allow classification of children (similar to what we want to do for 'measurement device'. Lookint at what classifies here, we may want to reconsider a contain function assigned to a part of an entity is necessarily also a function of the whole (e.g. is a centrifuge a container because it has test tubes as parts?)" xsd:string +property_value: IAO:0000111 "container" xsd:string +property_value: IAO:0000114 IAO:0000123 +property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string + +[Term] +id: OBI:0001046 +name: bioreactor +def: "A device or system that supports a biologically active environment. ALAN SAYS NOT AN INSTRUMENT" [] +is_a: OBI:0000967 ! container +property_value: IAO:0000111 "bioreactor" xsd:string +property_value: IAO:0000114 IAO:0000120 +property_value: IAO:0000117 "PERSON: Erik Segerdell" xsd:string +property_value: IAO:0000119 http://en.wikipedia.org/wiki/Bioreactor xsd:string + +[Term] +id: OBI:0400043 +name: flow cell +def: "Aparatus in the fluidic subsystem where the sheath and sample meet. Can be one of several types; jet-in-air, quartz cuvette, or a hybrid of the two. The sample flows through the center of a fluid column of sheath fluid in the flow cell." [] +xref: colombos:FLOW_CELL +is_a: OBI:0000967 ! container +property_value: IAO:0000111 "flow cell" xsd:string +property_value: IAO:0000112 "Biofilm Flow Cell" xsd:string +property_value: IAO:0000114 IAO:0000123 +property_value: IAO:0000117 "Person:John Quinn" xsd:string +property_value: IAO:0000118 "flow_cell" xsd:string +property_value: IAO:0000119 http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm xsd:string + +[Term] +id: OMIT:0002104 +name: Anaerobiosis +is_a: ZECO:0000187 ! oxygen content +property_value: http://purl.obolibrary.org/definition "oxygen content in which the concentration of oxygen is zero" xsd:string + +[Term] +id: OMIT:0007298 +name: gravitation +xref: colombos:GRAVITY +is_a: PATO:0001018 ! physical quality + +[Term] +id: OMIT:0015719 +name: weightlessness +is_a: OMIT:0018667 ! hypogravity + +[Term] +id: OMIT:0018665 +name: altered gravity +is_a: OMIT:0007298 ! gravitation + +[Term] +id: OMIT:0018667 +name: hypogravity +is_a: OMIT:0018665 ! altered gravity + +[Term] +id: OMP:0000176 +name: biofilm phenotype +namespace: microbial_phenotype +def: "A multi-organism phenotype dealing with the process in which microorganisms attach to and grow on a surface and produce extracellular polymers that facilitate attachment and matrix formation." [GO:0042710, OMP:WAM] +xref: colombos:GROWTH.BIOFILM +is_a: OMP:0007167 ! population growth phenotype +property_value: MCO:0000190 "biofilm cells" xsd:string +created_by: Adrienne +creation_date: 2011-02-02T03:17:19Z + +[Term] +id: OMP:0000282 +name: slower growth rate +namespace: microbial_phenotype +def: "An altered growth rate phenotype where the rate at which a cell or cells multiplies is decreased relative to a designated control." [OMP:DAS] +synonym: "decreased growth rate (generations per unit time)" RELATED [] +synonym: "increased generation time" EXACT [] +is_a: OMP:0007115 ! altered growth rate +created_by: mchibucos +creation_date: 2011-07-21T02:43:01Z + +[Term] +id: OMP:0000283 +name: faster growth rate +namespace: microbial_phenotype +def: "An altered growth rate phenotype where the rate at which a cell or cells multiplies is increased relative to a designated control." [OMP:DAS] +synonym: "decreased generation time" EXACT [] +synonym: "increased growth rate (generations per unit time)" RELATED [] +is_a: OMP:0007115 ! altered growth rate +created_by: mchibucos +creation_date: 2011-07-21T02:43:22Z + +[Term] +id: OMP:0007115 +name: altered growth rate +namespace: microbial_phenotype +def: "A population growth phenotype where the rate at which a cell or cells multiplies is altered relative to a designated control." [OMP:DAS] +synonym: "altered doubling time" EXACT [] +synonym: "altered generation time" RELATED [] +is_a: OMP:0007156 ! growth rate phenotype +created_by: siegele +creation_date: 2014-07-17T16:29:34Z + +[Term] +id: OMP:0007156 +name: growth rate phenotype +namespace: microbial_phenotype +def: "A growth phenotype concerning the rate at which the number of organisms or cells in a microbial population increases over time." [OMP:DAS] +xref: colombos:GROWTH_RATE +is_a: OMP:0007167 ! population growth phenotype +created_by: siegele +creation_date: 2014-08-28T12:14:20Z + +[Term] +id: OMP:0007167 +name: population growth phenotype +namespace: microbial_phenotype +def: "A microbial phenotype that affects the rate or extent of increase in the number of individuals in a microbial population as the result of sexual or asexual reproduction." [FYPO:0001358, OMP:DAS] +comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. +xref: GO:0000003 "reproduction" +is_a: BFO:0000019 ! quality +created_by: siegele +creation_date: 2014-09-25T17:14:07Z + +[Term] +id: PATO:0000146 +name: temperature +namespace: quality +def: "A physical quality of the thermal energy of a system." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +xref: colombos:TEMPERATURE +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001018 +name: physical quality +namespace: quality +alt_id: PATO:0002079 +def: "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." [PATOC:GVG] +subset: attribute_slim +synonym: "relational physical quality" EXACT [] +xref: Wikipedia:Physical_property +is_a: PATO:0001241 ! physical object quality +property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl + +[Term] +id: PATO:0001025 +name: pressure +namespace: quality +def: "A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001241 +name: physical object quality +namespace: quality +alt_id: PATO:0001237 +alt_id: PATO:0001238 +def: "A quality which inheres in a continuant." [] +comment: Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles. +synonym: "monadic quality of a continuant" EXACT [] +synonym: "monadic quality of an object" NARROW [] +synonym: "monadic quality of continuant" NARROW [] +synonym: "multiply inhering quality of a physical entity" EXACT [] +synonym: "quality of a continuant" EXACT [] +synonym: "quality of a single physical entity" EXACT [] +synonym: "quality of an object" EXACT [] +synonym: "quality of continuant" EXACT [] +xref: snap:Quality +is_a: BFO:0000019 ! quality +property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl + +[Term] +id: PATO:0001291 +name: electromagnetic (EM) radiation quality +namespace: quality +def: "A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation." [] +subset: attribute_slim +is_a: PATO:0001739 ! radiation quality +property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl + +[Term] +id: PATO:0001300 +name: optical quality +namespace: quality +def: "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light." [] +subset: attribute_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality +property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl + +[Term] +id: PATO:0001305 +name: increased temperature +namespace: quality +alt_id: PATO:0000678 +def: "A temperature which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high temperature" EXACT [] +synonym: "hot" EXACT [] +is_a: PATO:0000146 ! temperature +relationship: is_opposite_of PATO:0001306 ! decreased temperature + +[Term] +id: PATO:0001306 +name: decreased temperature +namespace: quality +alt_id: PATO:0000677 +def: "A temperature which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "cold" EXACT [] +synonym: "low temperature" EXACT [] +is_a: PATO:0000146 ! temperature +relationship: is_opposite_of PATO:0001305 ! increased temperature + +[Term] +id: PATO:0001488 +name: cellular motility +namespace: quality +def: "A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously." [thefreedictionary.com:thefreedictionary.com] +comment: Term should be obsoleted and the GO term cellular motility should be used instead. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality +property_value: MCO:0000190 "cell motility" xsd:string + +[Term] +id: PATO:0001739 +name: radiation quality +namespace: quality +def: "A quality that inheres in an bearer by virtue of how that bearer interacts with radiation." [] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality +property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl + +[Term] +id: PATO:0002297 +name: decreased cellular motility +namespace: quality +def: "A cellular motility which is lower relative to the normal or average." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001488 ! cellular motility +relationship: is_opposite_of PATO:0002298 ! increased cellular motility + +[Term] +id: PATO:0002298 +name: increased cellular motility +namespace: quality +def: "A cellular motility which is higher relative to the normal or average." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001488 ! cellular motility +relationship: is_opposite_of PATO:0002297 ! decreased cellular motility + +[Term] +id: PECO:0001036 +name: chemical stress treatment +namespace: plant_environment_ontology +def: "A chemical treatment (EO:0007189) that induces stress." [PO:cooperl] +xref: EO_GIT:64 +xref: OBO_SF2_EO:64 +is_a: MCO:0000866 ! treatment +created_by: moorel +creation_date: 2013-04-16T13:48:41Z + +[Term] +id: PECO:0001037 +name: oxidative stress treatment +namespace: plant_environment_ontology +def: "A chemical stress treatment (EO:0001036) involving use of oxidative stress-inducing chemicals." [PO:cooperl] +xref: EO_GIT:32 +xref: OBO_SF2_EO:32 +is_a: PECO:0001036 ! chemical stress treatment +property_value: MCO:0000190 "oxidation stress" xsd:string +property_value: MCO:0000190 "oxidative stress" xsd:string +created_by: moorel +creation_date: 2013-04-16T13:54:16Z + +[Term] +id: PECO:0001038 +name: osmotic stress treatment +namespace: plant_environment_ontology +def: "A chemical stress treatment (EO:0001036) involving use of osmotic stress-inducing chemicals." [PO:cooperl] +xref: EO_GIT:31 +xref: OBO_SF2_EO:31 +is_a: PECO:0001036 ! chemical stress treatment +property_value: MCO:0000190 "osmotic shock" xsd:string +property_value: MCO:0000190 "osmotic stress" xsd:string +created_by: moorel +creation_date: 2013-04-16T14:11:36Z + +[Term] +id: PECO:0007178 +name: atmospheric pressure +namespace: plant_environment_ontology +def: "The treatment involving an exposure to a given pressure of the atmosphere at a given point. Its measurement can be expressed in several ways. One is in millibars. Another is in inches or millimeters of mercury (Hg)." [GR:pj] +synonym: "barometric pressure" RELATED [] +is_a: PATO:0001025 ! pressure + +[Term] +id: UBERON:0000174 +name: excreta +namespace: uberon +alt_id: UBERON:0000324 +alt_id: UBERON:0007550 +def: "A portion of organism substance that is the product of an excretion process that will be eliminated from the body. An excretion process is elimination by an organism of the waste products that arise as a result of metabolic activity" [GO:0007588, http://orcid.org/0000-0002-6601-2165] +synonym: "excreted substance" EXACT [] +synonym: "excretion" RELATED [BTO:0000491] +synonym: "portion of excreted substance" EXACT [FMA:9674] +synonym: "waste substance" EXACT [AEO:0000184] +xref: AEO:0000184 +xref: BTO:0000491 +xref: EHDAA2_RETIRED:0003184 +xref: ENVO:02000022 +xref: FMA:9674 +xref: galen:Excretion +is_a: MCO:0000014 ! natural medium + +[Term] +id: UBERON:0000479 +name: tissue +namespace: uberon +def: "Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation." [CARO:0000043] +subset: pheno_slim +subset: upper_level +synonym: "portion of tissue" EXACT [CARO:0000043] +synonym: "simple tissue" NARROW [AEO:0000043] +synonym: "tissue portion" EXACT [] +xref: AAO:0000607 +xref: AAO:0010054 +xref: AEO:0000043 +xref: BILA:0000043 +xref: birnlex:19 +xref: CALOHA:TS-2090 +xref: CARO:0000043 +xref: EHDAA2:0003043 +xref: EMAPA:35868 +xref: FBbt:00007003 +xref: FMA:9637 +xref: galen:Tissue +xref: HAO:0000043 +xref: http://linkedlifedata.com/resource/umls/id/C0040300 +xref: MA:0003002 +xref: MESH:D014024 +xref: NCIT:C12801 +xref: TAO:0001477 +xref: TGMA:0001844 +xref: UMLS:C0040300 {source="ncithesaurus:Tissue"} +xref: VHOG:0001757 +xref: WBbt:0005729 +xref: XAO:0003040 +xref: ZFA:0001477 +is_a: MCO:0000014 ! natural medium +property_value: editor_note "changed label and definition to reflect CARO2" xsd:string + +[Term] +id: UBERON:0000912 +name: mucus +namespace: uberon +def: "Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water." [http://en.wikipedia.org/wiki/Mucus] +xref: CALOHA:TS-2144 +xref: colombos:MUCUS +xref: ENVO:02000040 +xref: FMA:66938 +xref: GAID:1164 +xref: galen:Mucus +xref: http://en.wikipedia.org/wiki/Mucus +xref: http://linkedlifedata.com/resource/umls/id/C0026727 +xref: MESH:D009093 +xref: NCIT:C13259 +xref: OpenCyc:Mx4rvVjHq5wpEbGdrcN5Y29ycA +xref: UMLS:C0026727 {source="ncithesaurus:Mucus"} +is_a: UBERON:0006314 ! bodily fluid +property_value: has_relational_adjective "mucoid" xsd:string +property_value: has_relational_adjective "mucous" xsd:string + +[Term] +id: UBERON:0001088 +name: urine +namespace: uberon +def: "Excretion that is the output of a kidney" [http://en.wikipedia.org/wiki/Urine, https://github.com/geneontology/go-ontology/issues/11025] +subset: efo_slim +subset: pheno_slim +subset: uberon_slim +xref: BTO:0001419 +xref: CALOHA:TS-1092 +xref: EFO:0001939 +xref: EMAPA:36554 +xref: ENVO:00002047 +xref: FMA:12274 +xref: GAID:1189 +xref: galen:Urine +xref: http://en.wikipedia.org/wiki/Urine +xref: http://linkedlifedata.com/resource/umls/id/C0042036 +xref: MA:0002545 +xref: MAT:0000058 +xref: MESH:D014556 +xref: MIAA:0000058 +xref: NCIT:C13283 +xref: OpenCyc:Mx4rvVjGppwpEbGdrcN5Y29ycA +xref: UMLS:C0042036 {source="ncithesaurus:Urine"} +is_a: UBERON:0000174 ! excreta +property_value: taxon_notes "kidney excreta from some taxa (e.g. in aves) may not be liquid" xsd:string + +[Term] +id: UBERON:0006314 +name: bodily fluid +namespace: uberon +def: "Liquid components of living organisms. includes fluids that are excreted or secreted from the body as well as body water that normally is not." [http://en.wikipedia.org/wiki/Body_fluid, MESH:A12.207] +subset: pheno_slim +synonym: "body fluid" EXACT [GAID:266] +synonym: "fluid" BROAD [] +xref: birnlex:20 +xref: Body:fluid +xref: FMA:280556 +xref: GAID:266 +xref: galen:BodyFluid +xref: MESH:D001826 +is_a: MCO:0000014 ! natural medium + +[Term] +id: ZECO:0000187 +name: oxygen content +is_a: MCO:0000078 ! aeration +property_value: MCO:0000851 "an aeration quality that inheres in a bearer by virtue of the amount of oxygen the bearer contains" xsd:string + +[Term] +id: ZECO:0000188 +name: hyperoxia +def: "oxygen content with high oxygen concentration" [] +is_a: ZECO:0000187 ! oxygen content +property_value: MCO:0000190 "high oxygen saturation" xsd:string +property_value: MCO:0000190 "oxygen high saturation (300%)" xsd:string + +[Term] +id: ZECO:0000189 +name: hypoxia +def: "oxygen content with low oxygen concentration" [] +is_a: ZECO:0000187 ! oxygen content +property_value: MCO:0000190 "decreased oxygen" xsd:string +property_value: MCO:0000190 "microaerobic" xsd:string +property_value: MCO:0000190 "microaerobiosis" xsd:string + +[Term] +id: ZECO:0000200 +name: pH +def: "A physical quality that inheres in a bearer by virtue of the amount of hydrogen ions it contains" [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: ZECO:0000201 +name: acidic +def: "Experimental condition in which the pH of the water is lower than the pH of the controlled conditions." [] +is_a: ZECO:0000200 ! pH +property_value: MCO:0000190 "acid pH" xsd:string + +[Term] +id: ZECO:0000202 +name: basic +def: "Experimental condition in which the pH of the water is higher than the pH of the controlled conditions." [] +is_a: ZECO:0000200 ! pH +property_value: MCO:0000190 "alkaline pH" xsd:string diff --git a/pages/1_1. Mapping_local_metadata.py b/pages/1_1. Mapping_local_metadata.py index 4226696..f26e4de 100644 --- a/pages/1_1. Mapping_local_metadata.py +++ b/pages/1_1. Mapping_local_metadata.py @@ -1,13 +1,12 @@ +import common import streamlit as st import pandas as pd import numpy as np import re +import os +import gzip +import json import ParsingModule -import warnings -warnings.filterwarnings("ignore") -from PIL import Image -import base64 -import io st.set_page_config( @@ -20,221 +19,205 @@ }, ) -def add_logo(logo_path, width, height): - """Read and return a resized logo""" - logo = Image.open(logo_path) - modified_logo = logo.resize((width, height)) - return modified_logo - -def get_base64_image(image): - img_buffer = io.BytesIO() - image.save(img_buffer, format="PNG") - img_str = base64.b64encode(img_buffer.getvalue()).decode() - return img_str - -my_logo = add_logo(logo_path="final_logo.png", width=149, height=58) - -st.markdown( - f""" - - """, - unsafe_allow_html=True, -) - +common.inject_sidebar_logo() +local_dir = os.path.dirname(__file__) + +# --- constants --- + + +TEMPLATE_COLUMNS = ["source name", "assay name", "technology type", "characteristics[age]", + "characteristics[ancestry category]", + "characteristics[biological replicate]", + "characteristics[cell line]", + "characteristics[cell type]", + "characteristics[developmental stage]", + "characteristics[disease]", + "characteristics[individual]", + "characteristics[organism part]", + "characteristics[organism]", + "characteristics[sex]", + "characteristics[enrichment process", + "characteristics[compound]", + "characteristics[concentration of compound]", + "comment[modification parameters]", + "comment[cleavage agent details]", + "comment[data file]", + "comment[fraction identifier]", + "comment[fractionation method]", + "comment[instrument]", + "comment[label]", + "comment[technical replicate]", + "comment[fragment mass tolerance]", + "comment[precursor mass tolerance]", + "comment[dissociation method]", + "characteristics[spiked compound]", + "characteristics[synthetic peptide]", + "characteristics[phenotype]", + "comment[depletion]"] +VALUE_COLUMNS=["source name", "assay name", "comment[data file]","comment[fraction identifier]","comment[technical replicate]"] +OTHER_COLUMNS = ["characteristics[sex]", "characteristics[age]"] +MAP_ORGANISM_DICT = {'Homo sapiens': ['Human', 'human', 'homo sapiens', 'Homo Sapiens'], + 'Mus musculus': ['mouse', 'Mouse', 'Mus Musculus', 'mus musculus'], + 'Arabidopsis thaliana': ['arabidopsis thaliana', 'Arabidopsis Thaliana', 'arabidopsis', 'Arabidopsis', 'thale cress'], + 'Drosophila melanogaster': ['drosophila', 'Drosophila', 'Drosophila Melanogsaster', 'drosophila melanogaster', 'fruitfly', 'fruit fly'], + 'Saccharomyces cerevisiae':['Saccharomyces Cerevisiae', 'saccharomyces cerevisiae', "brewer's yeast", "Brewer's yeast"], + 'Caenorhabditis elegans':['C. Elegans', 'C. elegans', 'c. elegans', 'caenorhabditis elegans', 'Caenorhabditis Elegans', 'worm', 'Worm'], + 'Danio rerio':['Danio Rerio', 'danio rerio', 'zebrafish', 'Zebrafish'], + 'Escherichia coli': ['E. Coli', 'E. coli', 'e. coli', 'Escherichia Coli', 'escherichia coli']} +# --- helpers --- +def validate_sex_column(values): + return all(x in ['M', 'F', 'NA'] for x in values) + +def map_organism(values): + for key, synonyms in MAP_ORGANISM_DICT.items(): + values = [key if v in synonyms else v for v in values] + return values + +def check_ontology(values, ontology_terms): + return set(values).issubset(set(ontology_terms)) + +def normalize_organism(values): + """Replace synonyms in values with canonical organism names.""" + normalized = [] + for val in values: + replaced = False + for canonical, synonyms in MAP_ORGANISM_DICT.items(): + if val in synonyms: + normalized.append(canonical) + replaced = True + break + if not replaced: + normalized.append(val) + return normalized + # --- main UI --- st.title("1. Map local metadata to SDRF") -st.markdown( - """If you have a local metadata file available, you can use this file to map the data to the required SDRF information. """ -) -st.markdown( - """**Important:** you can upload the file in csv, tsv or xlsx format. -The order of your raw file names should match the order in which you inputted them in the previous step""" -) - - +st.markdown(""" +If you have a local metadata file available, you can map the data to the required SDRF columns. +**Important:** upload a CSV, TSV, or XLSX. Order of raw file names should match those from the previous step. +""") - -data_dict = st.session_state["data_dict"] - -# if template_df is not in the session state, don't run all the code below if "template_df" not in st.session_state: - st.error("Please fill in the template file in the Home page first", icon="🚨") + st.error("Please fill in the template file in the Home page first", icon="🚨") st.stop() -else: - template_df = st.session_state["template_df"] - st.write("**This is your current SDRF file.**") - st.write(template_df) +template_df = st.session_state["template_df"] +data_dict = st.session_state["data_dict"] + +st.write("**Current SDRF file:**") +st.dataframe(template_df) with st.sidebar: - download = st.download_button("Press to download SDRF file",ParsingModule.convert_df(template_df), "intermediate_SDRF.sdrf.tsv", help="download your SDRF file") + if st.button("Validate SDRF file before download"): + # Perform validation or conversion + converted_data = ParsingModule.convert_df(template_df) + st.success("SDRF file validated! Ready to download.") + + st.download_button( + label="Download validated SDRF file", + data=converted_data, + file_name="intermediate_SDRF.sdrf.tsv", + mime="text/tab-separated-values" + ) + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") + # Ask the user to upload their own metadata file and to map it to the columns of the template file -metadata_sheet = st.file_uploader( - "Upload your local metadata file (.csv, .tsv or .xls)", type=["csv", "tsv", "xlsx"] -) -if metadata_sheet is not None: - file_extension = metadata_sheet.name.split(".")[-1] - if file_extension == "csv": - metadata_df = pd.read_csv(metadata_sheet) - elif file_extension == "tsv": - metadata_df = pd.read_csv(metadata_sheet, sep="\t") - elif file_extension == "xlsx": - metadata_df = pd.read_excel(metadata_sheet) - st.write("Your metadata file:") +metadata_file = st.file_uploader( + "Upload your local metadata file (.csv, .tsv or .xls)", type=["csv", "tsv", "xlsx"]) +if metadata_file is not None: + ext = metadata_file.name.split(".")[-1] + if ext == "csv": + metadata_df = pd.read_csv(metadata_file) + elif ext == "tsv": + metadata_df = pd.read_csv(metadata_file, sep="\t") + elif ext == "xlsx": + metadata_df = pd.read_excel(metadata_file) + st.dataframe(metadata_df) - if "metadata_df" not in st.session_state: - st.session_state["metadata_df"] = metadata_df - # Check for potential mismatch in number of samples - if metadata_df.shape[0] != template_df.shape[0]: - st.error( - "There is a mismatch in the number of uploaded files and the number of files in the metadata sheet", - icon="🚨", - ) + if metadata_df.shape[0] != template_df.shape[0]: + st.error(f"Row count mismatch: metadata has {metadata_df.shape[0]}, SDRF has {template_df.shape[0]}.") + + # Initialize mapping_df ONCE + if "mapping_df" not in st.session_state: + st.session_state["mapping_df"] = pd.DataFrame({ + "Metadata column": metadata_df.columns.tolist(), + "Mapped SDRF column": ["" for _ in metadata_df.columns] + }) + + # Display editable mapping table + edited_mapping = st.data_editor( + st.session_state["mapping_df"], + column_config={ + "Mapped SDRF column": st.column_config.SelectboxColumn( + "Mapped SDRF column", + options=[""] + TEMPLATE_COLUMNS + ) + }, + num_rows="fixed", + use_container_width=True + ) + + # Store edits + st.session_state["mapping_df"] = edited_mapping + + if st.button("πŸš€ Apply Mappings"): + applied = False + for _, row in st.session_state["mapping_df"].iterrows(): + meta_col = row["Metadata column"] + sdrf_col = row["Mapped SDRF column"] + if not sdrf_col: + # st.warning(f"⚠️ '{meta_col}' not mapped") + continue + + input_values = metadata_df[meta_col].dropna().unique() + + valid = False + if sdrf_col == "characteristics[organism]": + normalized_values = normalize_organism(input_values) + name = "all_organism_elements" + ontology_terms = data_dict.get(name, []) + + if set(normalized_values).issubset(ontology_terms): + st.success(f"βœ… Mapped (normalized) '{meta_col}' β†’ '{sdrf_col}'") + template_df[sdrf_col] = metadata_df[meta_col].replace(dict(zip(input_values, normalized_values))) + applied = True + valid = True + else: + invalid_terms = set(normalized_values) - set(ontology_terms) + st.error(f"❌ {invalid_terms} not valid ontology terms after normalization for '{sdrf_col}'") + + elif sdrf_col in VALUE_COLUMNS: + valid = True + elif sdrf_col in OTHER_COLUMNS: + if sdrf_col == "characteristics[age]": + valid = ParsingModule.check_age_format(metadata_df, meta_col) + if not valid: + st.error(f"❌ Invalid age format in '{meta_col}'") + elif sdrf_col == "characteristics[sex]": + valid = all(val in ["M", "F", "NA"] for val in input_values) + if not valid: + st.error(f"❌ Invalid sex values in '{meta_col}' (expected M, F, NA)") + else: + name = f"all_{sdrf_col.split('[')[-1].split(']')[0].replace(' ', '_')}_elements" + ontology_terms = data_dict.get(name, []) + if ontology_terms: + if set(input_values).issubset(ontology_terms): + valid = True + else: + invalid_terms = set(input_values) - set(ontology_terms) + st.error(f"❌ {invalid_terms} not valid ontology terms for '{sdrf_col}'") + else: + st.warning(f"⚠️ No ontology data found for {sdrf_col}, mapping skipped.") + + if valid and sdrf_col != "characteristics[organism]": + st.success(f"βœ… Mapped '{meta_col}' β†’ '{sdrf_col}'") + template_df[sdrf_col] = metadata_df[meta_col] + applied = True + + if applied: + st.session_state["template_df"] = template_df + st.subheader("πŸŽ‰ Updated SDRF preview") + st.dataframe(template_df) - meta_columns = list(metadata_df.columns) - template_columns = [ - "source name", "assay name", "technology type", "characteristics[age]", - "characteristics[ancestry category]", - "characteristics[biological replicate]", - "characteristics[cell line]", - "characteristics[cell type]", - "characteristics[developmental stage]", - "characteristics[disease]", - "characteristics[individual]", - "characteristics[organism part]", - "characteristics[organism]", - "characteristics[sex]", - "characteristics[enrichment process", - "characteristics[compound]", - "characteristics[concentration of compound]", - "comment[modification parameters]", - "comment[cleavage agent details]", - "comment[data file]", - "comment[fraction identifier]", - "comment[fractionation method]", - "comment[instrument]", - "comment[label]", - "comment[technical replicate]", - "comment[fragment mass tolerance]", - "comment[precursor mass tolerance]", - "comment[dissociation method]", - "characteristics[spiked compound]", - "characteristics[synthetic peptide]", - "characteristics[phenotype]", - "comment[depletion]", - ] - value_columns=["source name", "assay name", "comment[data file]","comment[fraction identifier]","comment[technical replicate]"] - other_columns = ["characteristics[sex]", "characteristics[age]"] - - # First narrow down the columns in the metadata file that are useful to match to the SDRF file - sel, subm = st.columns(2) - with sel: - columns_to_match = st.multiselect( - "Select columns containing data that will be used in the SDRF data", - meta_columns, - ) - with subm: - submitbox = st.checkbox('Ready to match?') - mismatches = [] - if submitbox: - col1, col2, col3, col4 = st.columns(4) - - selected_col = None - matched_col = None - for i in range(len(columns_to_match)): - if not selected_col: - with col1: - selected_col = st.selectbox( - f"Select column {i+1} to match in your metadata file:", - [""] + columns_to_match, - index=0, - key=f"selected_col{i}", - ) - if selected_col and not matched_col: - with col2: - matched_col = st.selectbox( - f"Select the corresponding column from the SDRF file:", - ["", None] + template_columns, - index=0, - key=f"matched_col{i}", - ) - with col3: - check = st.checkbox("Match and check ontology", key=f"check{i}") - st.write(" ") - st.write(" ") - st.write(" ") - if matched_col != None and check: - input_values = metadata_df[selected_col].unique() - input_values = [ i for i in input_values if i is not np.nan] - name = (matched_col.split('[')[-1].split(']')[0]).replace(' ', '_') - name = 'all_' + name + '_elements' - if matched_col in value_columns: - with col4: - st.success('Great! The local metadata values are valid terms and are mapped to the SDRF file.', icon="βœ…") - template_df[matched_col] = metadata_df[selected_col] - elif matched_col in other_columns: - if matched_col == "characteristics[age]": - with col4: - if ParsingModule.check_age_format(template_df, "characteristics[age]") == False: - st.error("The age column is not in the correct format, please check and try again") - elif ParsingModule.check_age_format(template_df, "characteristics[age]") == True: - st.success('Great! The local metadata values are valid terms and are mapped to the SDRF file.', icon="βœ…") - template_df[matched_col] = metadata_df[selected_col] - if matched_col == "characteristics[sex]": - #check if input_values only contains M, F or NA and no other strings or numbers - if all(x in ['M', 'F', 'NA'] for x in input_values): - with col4: - st.success('Great! The local metadata values are valid terms and are mapped to the SDRF file.', icon="βœ…") - template_df[matched_col] = metadata_df[selected_col] - else: - with col4: - st.error("The sex column is not in the correct format. It should indiciate M, F or NA, please check and try again") - - elif (matched_col not in value_columns) and name not in data_dict: - with col4: - st.error("This column does not contain ontology-based terms so this column cannot be matched. Please fill it in using the next steps in the sidebar") - - else: - onto_elements = data_dict[name] - if matched_col == "characteristics[organism]": - map_organism_dict = {'Homo sapiens': ['Human', 'human', 'homo sapiens', 'Homo Sapiens'], - 'Mus musculus': ['mouse', 'Mouse', 'Mus Musculus', 'mus musculus'], - 'Arabidopsis thaliana': ['arabidopsis thaliana', 'Arabidopsis Thaliana', 'arabidopsis', 'Arabidopsis', 'thale cress'], - 'Drosophila melanogaster': ['drosophila', 'Drosophila', 'Drosophila Melanogsaster', 'drosophila melanogaster', 'fruitfly', 'fruit fly'], - 'Saccharomyces cerevisiae':['Saccharomyces Cerevisiae', 'saccharomyces cerevisiae', "brewer's yeast", "Brewer's yeast"], - 'Caenorhabditis elegans':['C. Elegans', 'C. elegans', 'c. elegans', 'caenorhabditis elegans', 'Caenorhabditis Elegans', 'worm', 'Worm'], - 'Danio rerio':['Danio Rerio', 'danio rerio', 'zebrafish', 'Zebrafish'], - 'Escherichia coli': ['E. Coli', 'E. coli', 'e. coli', 'Escherichia Coli', 'escherichia coli']} - #dictionary containing the 3 most occuring organisms and all the ways they could be written - # if the input value contains one of the values in the list, it will be replaced by the key - # the value in the dataframe will be replaced by the key - for key, value in map_organism_dict.items(): - for i in input_values: - if i in value: - metadata_df[selected_col].replace(i, key, inplace=True) - input_values[input_values.index(i)] = key - if not set(input_values).issubset(set(onto_elements)): - not_in_onto = set(input_values) - set(onto_elements) - mismatches.append(not_in_onto) - with col4: - st.error(f'{not_in_onto} are not ontology terms. Select the correct terms in the next steps directly from the ontology', icon="❌") - - elif (set(input_values).issubset(set(onto_elements))) and (len(input_values)>=1): - with col4: - st.success('Great! The local metadata values are valid terms and are mapped to the SDRF file.' , icon="βœ…") - template_df[matched_col] = metadata_df[selected_col] - if matched_col == None: - with col4: - st.write("Skip this column") - columns_to_match = [col for col in columns_to_match if col != selected_col] - template_columns = [col for col in template_columns if col != matched_col] - selected_col = None - matched_col = None diff --git a/pages/2_2. Labeling.py b/pages/2_2. Labeling.py index dcff741..8ba93ad 100644 --- a/pages/2_2. Labeling.py +++ b/pages/2_2. Labeling.py @@ -22,41 +22,100 @@ }, ) -def add_logo(logo_path, width, height): - """Read and return a resized logo""" - logo = Image.open(logo_path) - modified_logo = logo.resize((width, height)) - return modified_logo +import common +common.inject_sidebar_logo() -def get_base64_image(image): - img_buffer = io.BytesIO() - image.save(img_buffer, format="PNG") - img_str = base64.b64encode(img_buffer.getvalue()).decode() - return img_str +# Constants +LABEL_ELEMENTS_KEY = "all_label_elements" +LABEL_NODES_KEY = "label_nodes" +COMMENT_DATA_FILE_COL = "comment[data file]" +COMMENT_LABEL_COL = "comment[label]" +data_dict = st.session_state["data_dict"] -my_logo = add_logo(logo_path="final_logo.png", width=149, height=58) +def assign_labels(template_df, label_dict, all_labels): + new_rows = [] + + # 1Duplicate rows for labeled files + for filename, labels in label_dict.items(): + rows_to_duplicate = ( + template_df.copy() if filename == "ALL" + else template_df[template_df[COMMENT_DATA_FILE_COL] == filename] + ) + for label in labels: + new_row = rows_to_duplicate.copy() + new_row[COMMENT_LABEL_COL] = label + new_rows.append(new_row) + + labeled_df = pd.concat(new_rows, ignore_index=True) if new_rows else pd.DataFrame() -st.markdown( - f""" - - """, - unsafe_allow_html=True, -) + # 2️Find files not included in label_dict + labeled_files = set(label_dict.keys()) if "ALL" not in label_dict else set(template_df[COMMENT_DATA_FILE_COL].unique()) + unassigned_files = set(template_df[COMMENT_DATA_FILE_COL].unique()) - labeled_files + + if unassigned_files: + unassigned_rows = template_df[template_df[COMMENT_DATA_FILE_COL].isin(unassigned_files)].copy() + unassigned_rows[COMMENT_LABEL_COL] = "label free sample" # or np.nan + else: + unassigned_rows = pd.DataFrame() + + # 3️ Combine labeled and unassigned rows + combined_df = pd.concat([labeled_df, unassigned_rows], ignore_index=True) + return combined_df.sort_values(by=COMMENT_DATA_FILE_COL) + +def edit_mapping_table_aggrid(df, label_options): + """ + Shows editable AgGrid table for assigning labels per file. + Returns updated mapping DataFrame after clicking Update. + """ + df = df.copy() + df.fillna("", inplace=True) + cell_style = {"background-color": "#ffa478"} + + builder = GridOptionsBuilder.from_dataframe(df) + builder.configure_grid_options( + pagination=True, + paginationPageSize=500, + enableRangeSelection=True, + enableFillHandle=True, + suppressMovableColumns=True, + singleClickEdit=True + ) + # builder.configure_pagination(paginationAutoPageSize=False, paginationPageSize=500) + builder.configure_default_column(filterable=True, sortable=True, resizable=True) + for col in df.columns: + if col == "File name": + builder.configure_column(col, editable=False) + else: + builder.configure_column( + col, + editable=True, + cellEditor="agSelectCellEditor", + cellEditorParams={"values": [""] + label_options}, + cellStyle=cell_style + ) + + gridOptions = builder.build() + + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, # user must click Update + data_return_mode=DataReturnMode.AS_INPUT, + fit_columns_on_grid_load=False, + height=600 + ) + + return grid_return["data"] + st.title("2. Labeling") st.markdown( """If a raw file contains multiple labels, every label will need to be annotated on a different row. Here you can map label information to your raw files. As a result, the raw file information will be duplicated with the correct label filled in""" ) -data_dict = st.session_state["data_dict"] + # Get filled in template_df from other page # if template_df is not in the session state, don't run all the code below if "template_df" not in st.session_state: @@ -67,65 +126,101 @@ def get_base64_image(image): st.write("**This is your current SDRF file.**") st.write(template_df) +# Initialize label selections in session state if not already present if "all_selected_labels" not in st.session_state: st.session_state["all_selected_labels"] = [] with st.sidebar: - download = st.download_button("Press to download SDRF file",ParsingModule.convert_df(template_df), "intermediate_SDRF.sdrf.tsv", help="download your SDRF file") + if st.button("Validate SDRF file before download"): + # Perform validation or conversion + converted_data = ParsingModule.convert_df(template_df) + st.success("SDRF file validated! Ready to download.") + + st.download_button( + label="Download validated SDRF file", + data=converted_data, + file_name="intermediate_SDRF.sdrf.tsv", + mime="text/tab-separated-values" + ) + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") -#first select the labels + + +# --- Select labels --- +label_options = set(data_dict[LABEL_ELEMENTS_KEY]) +label_options.add(" ") # optional blank for no label + st.write("Input the label that was used in your experiment. If no label was added, indicate this using *label free sample*.") all_label_elements = data_dict["all_label_elements"] label_nodes = data_dict["label_nodes"] with st.form("Select here your ontology terms using the autocomplete function or the ontology-based tree menu", clear_on_submit=True): col1, col2 = st.columns(2) with col1: - # selectbox with search option - all_label_elements.append(" ") - all_label_elements = set(all_label_elements) return_search = st.multiselect( - "Select your matching ontology term using this autocomplete function", - all_label_elements) + "Select ontology terms (autocomplete):", + sorted(label_options) + ) with col2: - st.write("Or follow the ontology based drop down menu below") - return_select = tree_select(label_nodes, no_cascade=True, expand_on_click=True, check_model="leaf") - all_selected_labels = return_search + return_select["checked"] - all_selected_labels = [i.split(',')[-1] for i in all_selected_labels if i is not None] - s = st.form_submit_button("Submit selection") - if s: - st.write(f"Selection contains: {all_selected_labels}") - st.session_state["all_selected_labels"] = all_selected_labels -#match filenames to labels -st.write("Match the filenames to the labels you selected above. Select ALL if the label is found in all raw files.") -label_dict = defaultdict(list) -for label in all_selected_labels: - selected_files = st.multiselect(f"Select files labeled with {label}.", ["ALL"] + template_df["comment[data file]"].values.tolist(), key=f"selected_label_{label}") - for i in selected_files: - label_dict[i].append(label) -ready = st.checkbox('Ready?') -# based on the label_dict, duplicate rows with comment[data file] in the keys of the lable_dict -# duplicate the row with each row having one of the labels in the characteristics[label] column that is in the value of the label_dict -# if the key is ALL, duplicate the row for each label from the all_selected_labels list - -if ready: - #first get the rows that need to be duplicated - new_rows = [] - all_selected_labels = st.session_state["all_selected_labels"] - for filename, label_list in label_dict.items(): - if filename == "ALL": - rows_to_add = template_df.copy() - else: - rows_to_add = template_df[template_df["comment[data file]"] == filename] - label_idx = 0 - n = len(label_list) - for i in range(n): - new_row = rows_to_add.copy() - new_row["comment[label]"] = label_list[label_idx] - label_idx += 1 - new_rows.append(new_row) - template_df = pd.concat(new_rows, ignore_index=True) - template_df = template_df.sort_values(by='comment[data file]') - st.write("SDRF file with label information") - st.dataframe(template_df) - st.session_state["template_df"] = template_df \ No newline at end of file + st.write("Or browse ontology tree:") + tree_result = tree_select(data_dict[LABEL_NODES_KEY], no_cascade=True, expand_on_click=True, check_model="leaf") + tree_checked = tree_result["checked"] if tree_result and "checked" in tree_result else [] + + selected_labels = [lbl.split(',')[-1] for lbl in (return_search + tree_checked) if lbl] + submitted = st.form_submit_button("Submit selection") + st.session_state['selected_labels'] = True + +st.write(selected_labels, submitted) +if selected_labels in st.session_state(): + st.session_state["all_selected_labels"] = selected_labels + st.write(f"Selection contains: {selected_labels}") + + num_label_cols = len(st.session_state["all_selected_labels"]) + label_column_names = [f"Assigned Label {i+1}" for i in range(num_label_cols)] + file_names = template_df[COMMENT_DATA_FILE_COL].tolist() + # Create mapping table: each file = row; assigned label = editable dropdown + if "mapping_table" not in st.session_state: + initial_data = { + "File name": file_names + } + for col in label_column_names: + initial_data[col] = [""] * len(file_names) + st.session_state["mapping_table"] = pd.DataFrame(initial_data) + column_config = { + "File name": st.column_config.Column( + label="File name", + disabled=True, # not editable + required=True + ) + } + # 3Show editable table + edited_mapping_df = edit_mapping_table_aggrid(st.session_state["mapping_table"], st.session_state["all_selected_labels"]) + # Detect grid update by comparing to session_state + if not edited_mapping_df.equals(st.session_state["mapping_table"]): + st.session_state["mapping_table"] = edited_mapping_df + + label_assignments = ( + edited_mapping_df + .melt(id_vars="File name", value_vars=label_column_names) + .query('value != ""') # drop rows where value is empty + .drop_duplicates(subset=["File name", "value"]) # remove duplicates + .rename(columns={"value": "Label"}) + ) + + # Group labels by file into a dictionary + label_dict = ( + label_assignments + .groupby("File name")["Label"] + .apply(list) + .to_dict() + ) + + updated_df = assign_labels(template_df, label_dict, st.session_state["all_selected_labels"]) + st.session_state["template_df"] = updated_df + + st.success("Labels applied to SDRF.") + st.write("Updated SDRF file:") + st.dataframe(updated_df, use_container_width=True) +else: + st.write('no selection') + diff --git a/pages/3_3. Annotate_columns.py b/pages/3_3. Annotate_columns.py new file mode 100644 index 0000000..baded33 --- /dev/null +++ b/pages/3_3. Annotate_columns.py @@ -0,0 +1,571 @@ +import re +import warnings +warnings.filterwarnings("ignore") +import streamlit as st +import pandas as pd +import numpy as np +import json +import gzip +import ParsingModule +import os +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode +from streamlit_tree_select import tree_select +from PIL import Image +import base64 +import io +import common + +st.set_page_config( + page_title="Annotate columns", + layout="wide", + page_icon="πŸ§ͺ", + menu_items={ + "Get help": "https://github.com/compomics/lesSDRF/issues", + "Report a bug": "https://github.com/compomics/lesSDRF/issues", + }, +) + + +import common +common.inject_sidebar_logo() + +with st.sidebar: + if st.button("Validate SDRF file before download"): + # Perform validation or conversion + converted_data = ParsingModule.convert_df(template_df) + st.success("SDRF file validated! Ready to download.") + + st.download_button( + label="Download validated SDRF file", + data=converted_data, + file_name="intermediate_SDRF.sdrf.tsv", + mime="text/tab-separated-values" + ) + + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: + *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") + +@st.cache_data +def load_organism_data(): + #find dir one up from current dir + data_dir = os.path.dirname(os.path.dirname(__file__)) + folder_path = os.path.join(data_dir, "data") + data = {} + for filename in os.listdir(folder_path): + # only load the files containing the following names: archae, bacteria, eukaryota, virus, unclassified, other sequences + if re.search(r"archaea|bacteria|eukaryota|virus|unclassified|other_sequences", filename): + file_path = os.path.join(folder_path, filename) + if filename.endswith(".json.gz"): + try: + with gzip.open(file_path, "rb") as f: + file_data = json.load(f) + filename_key = filename.replace(".json.gz", "") + data[filename_key] = file_data + except gzip.BadGzipFile: + st.write(f"Error reading file {file_path}: not a gzipped file") + else: + st.write(f"Skipping file {file_path}: not a gzipped file") + else: + continue + return data + +def organism_selection(species): + lem = organism_data[f"all_{species}_elements"] + search_term = st.text_input(f"Search for an {species} species here", "") + ret = ParsingModule.autocomplete_species_search(lem, search_term) + if ret != None: + return ret + +def clean_final_str(final_str): + final_str = final_str.replace(';;', ';') + #if it ends on TA=, not followed by anything remove TA= + if final_str.endswith("TA="): + final_str = final_str[:-3] + #add a space before each ; + final_str = final_str.replace(';', '; ') + return final_str + +data_dict = st.session_state["data_dict"] + +# unimod = data_dict["unimod_dict"] +# === CATEGORY: Free text input === +FREE_TEXT_COLUMNS = [ + "source name", + "assay name", + "characteristics[age]", #requires validation, + "characteristics[sex]", #validation + "characteristics[individual]" #needs validation, Only numbers? +] + +FREE_TEXT_WITH_QUESTION_COLUMNS = [ + "comment[collision energy]", #multipel within one experiment? + "comment[precursor mass tolerance]",#indicate unit, validate + "comment[fragment mass tolerance]", #indicate unit, validate + "characteristics[compound]",#multipel within one experiment? + "characteristics[concentration of compound]"# multipel within one experiment? +] + +# === CATEGORY: Ontology selection === +ONTOLOGY_COLUMNS = [ + "comment[alkylation reagent]", + "characteristics[ancestry category]", + "characteristics[cell type]", + "characteristics[cell line]", + "characteristics[disease]", + "characteristics[developmental stage]", + "comment[dissociation method]", + "characteristics[enrichment process]", + "characteristics[organism part]", + "comment[instrument]", + "comment[fractionation method]", + "comment[reduction reagent]" +] + +# === CATEGORY: Multiple options from list === +LIST_COLUMNS = [ + "comment[cleavage agent details]", #options are in data_dict["cleavage_list"] + "technology type", #options are "proteomic profiling by mass spectrometry","metabolomics profiling by mass spectrometry","other" + "comment[depletion]", #only options are depleted fraction, bound fraction, not depleted + "characterics[synthetic peptide]" #only options are synthetic vs not synthetic +] +LIST_OPTIONS = { + "comment[cleavage agent details]": data_dict.get("cleavage_list", []), + "technology type": [ + "proteomic profiling by mass spectrometry", + "metabolomics profiling by mass spectrometry", + "other" + ], + "comment[depletion]": [ + "depleted fraction", + "bound fraction", + "not depleted" + ], + "characterics[synthetic peptide]": [ + "synthetic", + "not synthetic" + ] + } + +# === CATEGORY: Structured modification annotation === +MODIFICATION_COLUMNS = [ + "comment[modification parameters]" #needs special +] + +# === CATEGORY: Organism === +ORGANISM_COLUMN = [ + "characteristics[organism]" +] + +# === CATEGORY: replicate info === +REP_COLUMNS = [ + "comment[fraction identifier]", #chose within a range? or free text? + "comment[technical replicate]", #range + "characteristics[biological replicate]" #range +] + +ADDITIONAL_COLUMNS = [ + "factor value", + "characteristics[age]", + "characteristics[ancestry category]", + "characteristics[biological replicate]", + "characteristics[cell line]", + "characteristics[cell type]", + "characteristics[developmental stage]", + "characteristics[disease]", + "characteristics[individual]", + "characteristics[organism part]", + "characteristics[organism]", + "characteristics[sex]", + "characteristics[enrichment process]", + "characteristics[compound]", + "characteristics[concentration of compound]", + "comment[modification parameters]", + "comment[cleavage agent details]", + "comment[data file]", + "comment[fraction identifier]", + "comment[instrument]", + "comment[label]", + "comment[technical replicate]", + "comment[fragment mass tolerance]", + "comment[precursor mass tolerance]", + "comment[dissociation method]", + "comment[depletion]", + "comment[collision energy]" +] + + + +COLUMN_EXPLANATIONS = { + "source name": "The source name is the unique sample name (it can be present multiple times if the same sample is used several times in the same dataset) eg. healthy_patient_1, diseased_patient_1. If you did not add it using the previous mapping function, you can input it here manually.", + "assay name": "The assay name is a name for the run file, this has to be a uniqe value eg. run 1 - run 2 - run 3_fraction1. If you did not add it using the previous mapping function, you can input it here manually.", + "factor value":"You can choose one or multiple columns that define the **factor value** in your experiment. This column indicates which experimental factor/variable is used as the hypothesis to perform the data analysis. If there are multiple factor values, we ask the user to take care in assigning biological and technical replicates", + "technology type": "Choose the technology type from a set of options:", + "characteristics[age]": "Input the ages of your samples using the Years Months Days format, e.g. 1Y 2M 3D. Age ranges should be formatted as e.g. 1Y-3Y", + "comment[alkylation reagent]": "Input the alkylation reagent that was used in your experiment", + "characteristics[ancestry category]": "Input the ancestry of your samples", + "characteristics[cell type]": "Input the cell type of your sample", + "characteristics[cell line]": "Input the cell line of your sample if one was used", + "comment[cleavage agent details]": "Input the cleavage agent details of your sample", + "characteristics[compound]": "If a compound was added to your sample, input the name here", + "characteristics[concentration of compound]": "Input the concentration with which the compound was added to your sample", + "comment[collision energy]": "Input the collision energy that was used in your experiment", + "characteristics[developmental stage]": "Input the developmental stage of your sample", + "characteristics[disease]": "If you have healthy and control samples, indicate healthy samples using *normal*. Input the disease for the other samples using the ontology", + "comment[dissociation method]": "Input the dissociation method that was used in your experiment", + "characteristics[enrichment process]": "Input the enrichment process that was used in your experiment", + "comment[instrument]": "Input the instrument that was used in your experiment", + "characteristics[individual]": "Do you have multiple individuals in your data?", + "comment[label]": "Input the label that was used in your experiment. If no label was added, indicate this using *label free sample*.", + "characteristics[organism]": "Select the species that is present in your sample", + "characteristics[organism part]": "Select the part of the organism that is present in your sample", + "comment[reduction reagent]": "Input the reduction reagent that was used in your experiment", + "characteristics[sex]": "Are there multiple sexes in your data?", + "comment[technical replicate]": "Do you have technical replicates?", + "characteristics[biological replicate]": "Do you have biological replicates?", + "comment[fragment mass tolerance]": "Input the fragment mass tolerance and **the unit (ppm or Da)**. click Update twice when finished", + "comment[precursor mass tolerance]": "Input the precursor mass tolerance and **the unit (ppm or Da)**. click Update twice when finished", + "characterics[synthetic peptide]": "If the sample is a synthetic peptide library, indicate this by selecting *synthetic* or *not synthetic*", + "comment[depletion]": "Input depleted fractions", + "comment[modification parameters]": "First select the modifications that are in your sample using the drop down autocomplete menu. After selection you will need to choose the modification type, position and target amino acid. Modification type can be fixed, variable or annotated. Annotated is used to search for all the occurrences of the modification into an annotated protein database file like UNIPROT XML or PEFF. Position can be anywhere, protein N-term, protein C-term, any N-term or any C-term. Target amino acid can be any amino acid or X if it's not in the list. You can also select multiple amino acids. If the modification of your choice is not available in the drop down list, select \"Other\" and input the modification name, chemical formula and mass of your custom modification. The final modification will be formatted following the SDRF guidelines after which you can click on \"Submit modifications\"." +} + +# Define the default button color (you can adjust this as desired) +default_color = "#ff4b4b" + +# Define the button CSS styles +button_styles = f""" + background-color: white; + color: {default_color}; + border-radius: 20px; + padding: 10px 20px; + border: 1px solid {default_color}; + text-align: center; + text-decoration: none; + display: inline-block; + font-size: 16px; + margin: 4px 2px; + cursor: pointer; +""" +st.title("""3. Annotate columns""") +# if df is not in the session state, don't run all the code below +if "template_df" not in st.session_state: + st.error("Please fill in the template file in the Home page first", icon="🚨") + st.stop() +else: + df = st.session_state["template_df"] + + +empty_columns = [col for col in df.columns if df[col].isnull().all() or (df[col] == "None").all()] +filled_columns = [col for col in df.columns if col not in empty_columns] +total_columns = len(df.columns) +filled_count = len(filled_columns) +progress = filled_count / total_columns + + +st.subheader("Current SDRF File") +st.progress(progress) +st.write(f"{filled_count}/{total_columns} columns annotated") +# ---- STEP 1: Build AgGrid with dynamic column config +# We'll rebuild builder every time to respect selected column +checkbox_values = {} + +with st.expander(f"βœ… Filled columns: {len(filled_columns)}"): + for col in filled_columns: + col1, col2 = st.columns([3,1]) + with col1: + st.checkbox(col, value=True, disabled=True) + with col2: + if st.button(f"Clear {col}", key=f"clear_{col}"): + df[col] = np.nan # or "empty" + if col not in empty_columns: + empty_columns.append(col) + if col in filled_columns: + filled_columns.remove(col) + st.success(f"Cleared column {col}. It’s now marked as empty.") + st.session_state["template_df"] = df + st.rerun() + +with st.expander(f"βž• Optional columns (add if relevant)"): + for col in ADDITIONAL_COLUMNS: + if col not in df.columns: + if st.button(f"Add {col}", key=f"add_{col}"): + df[col] = np.nan # or "empty" + empty_columns.append(col) + st.success(f"Added optional column: {col}") + st.session_state["template_df"] = df + st.rerun() + +# ---- STEP 1: Build AgGrid with dynamic column config +# We'll rebuild builder every time to respect selected column +selected_column = st.selectbox( + f"Required columns: select to annotate: {len(empty_columns)}", + [""] + empty_columns +) + +if selected_column: + st.info(COLUMN_EXPLANATIONS.get(selected_column, f"Please annotate {selected_column}.")) + builder = GridOptionsBuilder.from_dataframe(df) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, singleClickEdit=True) + + extracted_name = re.search(r"\[(.*?)\]", selected_column) + extracted_name = extracted_name.group(1) if extracted_name else selected_column + extracted_name = extracted_name.replace(' ', '_') + + if selected_column in FREE_TEXT_COLUMNS: + st.write(f"Selected column type: {type(selected_column)}") + st.write(f"{extracted_name} requires free text input annotation") + builder.configure_column(selected_column, editable=True,cellEditor="agTextCellEditor",cellStyle={"background-color": "#ffa478"}) + + elif selected_column in ONTOLOGY_COLUMNS: + st.write(f"Column '{extracted_name}' requires ontology-based annotation.") + df, columns_to_edit, num_required = ParsingModule.structure_questions(df, selected_column) + #exception for cell type + if extracted_name == "cell_type": + extracted_name = "cell" + ontology_elements = data_dict.get(f"all_{extracted_name}_elements", []) + ontology_tree = data_dict.get(f"{extracted_name}_nodes", {}) + selected_terms = ParsingModule.select_ontology_terms( + selected_column, + ontology_elements, + ontology_tree, + num_required=num_required + ) + if selected_terms: + if len(selected_terms) == 1: + for col in columns_to_edit: + df[col] = selected_terms[0] + st.session_state["template_df"] = df + else: + # === STEP 3: configure dropdown in AgGrid + builder.configure_columns( + columns_to_edit, + editable=True, + cellEditor="agSelectCellEditor", + cellEditorParams={"values": selected_terms}, + cellStyle={"background-color": "#ffa478"} + ) + st.session_state["template_df"] = df + + + elif selected_column in LIST_COLUMNS: + st.write(f"Column {extracted_name} has a designated list of options within the drop down") + df, columns_to_edit, num_required = ParsingModule.structure_questions(df, selected_column) + full_options = LIST_OPTIONS.get(selected_column, []) + selected_terms = st.multiselect( + f"Select allowed options for {extracted_name}:", + full_options, + max_selections = num_required + ) + if len(selected_terms) == num_required: + if len(selected_terms) == 1: + st.success(f"Selected: {selected_terms}. Only one option, will be automatically filled in. Just click Update") + for col in columns_to_edit: + df[col] = selected_terms[0] + st.session_state["template_df"] = df + else: + # === STEP 3: configure dropdown in AgGrid + st.success(f"Selected: {selected_terms}. Multiple options, use drop down menu within the table and click Update when finished") + builder.configure_columns( + columns_to_edit, + editable=True, + cellEditor="agSelectCellEditor", + cellEditorParams={"values": selected_terms}, + cellStyle={"background-color": "#ffa478"} + ) + + elif selected_column in FREE_TEXT_WITH_QUESTION_COLUMNS: + st.write(f"Column {extracted_name} has a designated list of options within the drop down") + df, columns_to_edit, num_required = ParsingModule.structure_questions(df, selected_column) + # Fill in num_required + + builder.configure_columns( + columns_to_edit, + editable=True, + cellEditor="agTextCellEditor", + cellStyle={"background-color": "#ffa478"} + ) + + elif selected_column in ORGANISM_COLUMN: + # Ensure base column exists + if selected_column not in df.columns: + df[selected_column] = np.nan + + # STEP 1: structure dataframe (multiple/multiple-in-one) + df, columns_to_edit, num_required = ParsingModule.structure_questions(df, selected_column) + + classical_model_organisms = [ + "Homo sapiens", "Mus musculus", "Drosophila Melanogaster", + "Arabidopsis thaliana", "Xenopus laevis", "Xenopus tropicalis", + "Saccharomyces cerevisiae", "Caenorhabditis elegans", + "Danio rerio", "Escherichia coli", "Cavia porcellus" + ] + + st.session_state.setdefault("selected_species", set()) + + model_type = st.radio("Are all used organisms a classical model organism?", ["Yes", "No"]) + + selected_species = set() + + if model_type == "Yes": + selected_species = set(st.multiselect( + f"Select {num_required} classical model organism(s):", + classical_model_organisms, + max_selections=num_required + )) + + elif model_type == "No": + st.write("Loading NCBITaxon ontology... (may take a few seconds)") + organism_data = load_organism_data() + + if organism_data: + st.success("Ontology loaded!") + else: + st.error("Failed to load ontology data.") + + url = "https://www.ebi.ac.uk/ols/ontologies/ncbitaxon" + st.markdown(f"[Open OLS ontology tree]({url})", unsafe_allow_html=True) + + tabs = st.tabs(['Eukaryota', 'Archaea', 'Bacteria', 'Viruses', 'Unclassified', 'Other']) + categories = ['eukaryota', 'archaea', 'bacteria', 'virus', 'unclassified', 'other_sequences'] + + for tab, category in zip(tabs, categories): + with tab: + ret = organism_selection(category) + if ret: + selected_species.update(ret if isinstance(ret, list) else [ret]) + + st.write(f"Selected species so far: {selected_species}") + + # Allow user to adjust count + if len(selected_species) > num_required: + st.warning(f"Selected {len(selected_species)} species but need {num_required}. Please deselect extra species below.") + deselect = st.multiselect("Deselect species:", list(selected_species)) + selected_species -= set(deselect) + + elif len(selected_species) < num_required: + st.warning(f"Selected {len(selected_species)} species but need {num_required}.") + + ready = st.checkbox("Confirm selected species") + + if ready and len(selected_species) == num_required: + selected_terms = list(selected_species) + + if len(selected_terms) == 1: + for col in columns_to_edit: + df[col] = selected_terms[0] + # st.success(f"Auto-filled columns {columns_to_edit} with: {selected_terms[0]}") + else: + builder.configure_columns( + columns_to_edit, + editable=True, + cellEditor="agSelectCellEditor", + cellEditorParams={"values": selected_terms}, + cellStyle={"background-color": "#ffa478"} + ) + + # Clean up session state + del st.session_state["selected_species"] + + elif selected_column in MODIFICATION_COLUMNS: + st.write("Select modifications and their details for annotation.") + + unimod = data_dict["unimod_dict"] + mod_options = sorted(list(unimod.keys())) + mod_options.append("Other") + + modification_types = ["Fixed", "Variable", "Annotated"] + positions = ["Anywhere", "Protein N-term", "Protein C-term", "Any N-term", "Any C-term"] + target_amino_acids = ["X","G","A","L","M","F","W","K","Q","E","S","P","V","I","C","Y","H","R","N","D","T"] + + selected_mods = st.multiselect("Select modifications:", mod_options) + + final_modifications = [] + for mod in selected_mods: + st.markdown(f"**Configuration for: {mod}**") + col1, col2, col3 = st.columns(3) + + with col1: + mt_sel = st.selectbox("Modification type:", modification_types, key=f"mt_{mod}") + with col2: + pos_sel = st.selectbox("Position:", positions, key=f"pos_{mod}") + with col3: + aa_sel = st.multiselect("Target amino acids:", target_amino_acids, key=f"aa_{mod}") + aa_str = ",".join(aa_sel) + + if mod == "Other": + col4, col5, col6 = st.columns(3) + with col4: + name = st.text_input("Name:", key=f"name_{mod}") + with col5: + formula = st.text_input("Formula:", key=f"formula_{mod}") + with col6: + mass = st.text_input("Mass:", key=f"mass_{mod}") + + mod_string = f"NT={name};MT={mt_sel};PP={pos_sel};TA={aa_str};CF={formula};MM={mass}" + else: + mod_string = f"{unimod[mod]};MT={mt_sel};PP={pos_sel};TA={aa_str}" + + mod_string = clean_final_str(mod_string) + final_modifications.append(mod_string) + st.success(f"Final annotation: {mod_string}") + + st.write(f"Selected modifications: {final_modifications}") + + if final_modifications: + confirm = st.checkbox("Click to add selected modifications to SDRF") + + if confirm: + index = df.columns.get_loc(selected_column) if selected_column in df.columns else len(df.columns) + for idx, mod in enumerate(final_modifications): + new_col_name = selected_column if idx == 0 else f"{selected_column}_{idx}" + if new_col_name not in df.columns: + st.write(new_col_name, idx, index) + df.insert(index + idx, new_col_name, mod) + else: + df[new_col_name] = mod + st.success(f"Added {len(final_modifications)} modification columns.") + + elif selected_column in REP_COLUMNS: + st.write(f"{extracted_name} requires numerical annotation") + replicate_presence = st.selectbox(f"Do you have {extracted_name}?", ("", "Yes", "No")) + if replicate_presence == "No": + st.success(f"All samples will be assigned {extracted_name}=1") + df[selected_column] = 1 + elif replicate_presence == "Yes": + st.info(f"You can now annotate the {extracted_name} number per sample (numeric values only).") + builder.configure_column( + selected_column, + editable=True, + cellEditor="agTextCellEditor", + cellStyle={"background-color": "#ffa478"} + ) + + else: + # fallback: free text input + builder.configure_column( + selected_column, + editable=True, + cellEditor="agTextCellEditor", + cellStyle={"background-color": "#ffa478"} + ) + + + + gridOptions = builder.build() + + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT, + fit_columns_on_grid_load=False + ) + + # st.session_state["df"] = grid_return["data"] + empty_columns = [col for col in df.columns if df[col].isnull().all() or (df[col] == "None").all()] + + if grid_return["data"] is not None and not grid_return["data"].equals(st.session_state.get("template_df")): + # User clicked update manually + st.session_state["template_df"] = grid_return["data"] + + df = st.session_state["template_df"] \ No newline at end of file diff --git a/pages/4_4. Ontology_input.py b/pages/4_4. Ontology_input.py new file mode 100644 index 0000000..6b8e1a0 --- /dev/null +++ b/pages/4_4. Ontology_input.py @@ -0,0 +1,205 @@ +import streamlit as st +import ParsingModule +import pandas as pd +import numpy as np +import re +import warnings +warnings.filterwarnings("ignore") +from streamlit_tree_select import tree_select +from PIL import Image +import base64 +import io +import requests +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode + +st.set_page_config(page_title="SDRF Ontology Mapper", layout="wide") +st.title("SDRF Ontology Mapper") +st.write("""Here you can search for any possible ontology term through the Ontology Lookup Service. It will allow you to use said term as a new column name and fill the values with its child terms or free text""") + +import common +common.inject_sidebar_logo() + +with st.sidebar: + if st.button("Validate SDRF file before download"): + # Perform validation or conversion + converted_data = ParsingModule.convert_df(template_df) + st.success("SDRF file validated! Ready to download.") + + st.download_button( + label="Download validated SDRF file", + data=converted_data, + file_name="intermediate_SDRF.sdrf.tsv", + mime="text/tab-separated-values" + ) + + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: + *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") + +def update_session_state(df): + st.session_state["template_df"] = df + +if "template_df" not in st.session_state: + st.error("Please fill in the template file in the Home page first", icon="🚨") + st.stop() +else: + df = st.session_state["template_df"] + with st.container(): + st.write("**This is your current SDRF file.**") + st.dataframe(df) + + +supported_ontologies = [ + 'cl', 'efo', 'hancestro', 'mco', 'ms', 'pride_cv', 'obi', + 'fbbt', 'po', 'clo', 'uberon', 'zfa', 'zfs', 'fbcv', + 'micro', 'panto', 'rs', 'chebi', 'mondo', 'eco', 'mro' +] +@st.cache_data() +def search_ols_term(term, exact=True): + url = "https://www.ebi.ac.uk/ols4/api/search" + params = { + "q": term, + "type": "class", + "rows": 100 + } + + response = requests.get(url, params=params) + response.raise_for_status() + results = response.json() + + if results['response']['numFound'] == 0: + return [] + + seen = set() + filtered = [] + for doc in results['response']['docs']: + label = doc.get('label', '').strip().lower() + obo_id = doc.get('obo_id') + ontology = doc.get('ontology_name') + description = doc.get('description') + + if ontology not in supported_ontologies: + continue + + if exact and label != term.lower(): + continue + + if obo_id and obo_id not in seen: + seen.add(obo_id) + filtered.append(doc) + + return filtered + +def get_ontology_children(obo_id, ontology): + term = obo_id.replace(':', '_') + encoded_url = f"https://www.ebi.ac.uk/ols4/api/ontologies/{ontology}/terms/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252F{term}/hierarchicalChildren?lang=en" + response = requests.get(encoded_url) + response.raise_for_status() + data = response.json() + children = [] + if '_embedded' in data: + for t in data['_embedded']['terms']: + children.append({ + 'label': t['label'], + 'obo_id': t['obo_id'], + 'description': t['description'] if 'description' in t else '' + }) + return children + +st.header("1. Browse the Ontology Lookup Service (OLS)") +# Step 1: Ontology term search +search_term = st.text_input("1. Search for ontology term", "") +exact_match = st.checkbox("Exact match only", value=True) +if st.button("Search"): + matches = search_ols_term(search_term, exact=exact_match) + st.session_state["search_results"] = matches + +# Render selectbox if search results are available +if "search_results" in st.session_state and st.session_state["search_results"]: + matches = st.session_state["search_results"] + options = [f"{m['label']} ({m['obo_id']}) [{m['ontology_name']}]" for m in matches] + selected_idx = st.selectbox( + "2. Select a term from the ontologies", list(range(len(options))), format_func=lambda i: options[i] + ) + selected = matches[selected_idx] + st.session_state.selected_term = selected + st.write("Check if the description matches your intent:", selected) +elif "search_results" in st.session_state: + st.warning("No matches found.") + +# Show child terms of the selected term +if st.session_state.get("selected_term"): + selected = st.session_state["selected_term"] + st.subheader("2. Child Terms") + with st.spinner("Fetching child terms..."): + children = get_ontology_children( + obo_id=selected["obo_id"], + ontology=selected["ontology_name"] + ) + + if children: + child_df = pd.DataFrame(children) + st.dataframe(child_df) + else: + st.info("No child terms found.") + child_df = pd.DataFrame() + +st.subheader("3. Add this term to SDRF") +col1, col2, col3 = st.columns(3) +with col1: + add_to_sdrf = st.radio("Do you want to add this term to your SDRF?", ["No", "Yes"], key="add_term") + if add_to_sdrf == "Yes": + with col2: + column_type = st.radio("Select column type", ["characteristic", "comment"], key="col_type") + column_name = f"{column_type}[{selected['label']}]" + st.write(f"New column name: **{column_name}**") + + try: + has_children = not child_df.empty + except NameError: + has_children = False + + if has_children: + with col3: + fill_method = st.radio("How would you like to fill the new column?", ["Use from child terms", "Enter free text"], key="fill_method") + if len(child_df) == 1: + st.info("Only one child term found β€” the entire column will be auto-filled with it if selected.") + else: + st.info("No child terms found for this ontology term.") + fill_method = "Enter free text" + + +st.markdown('#') + + +if st.button("Add column to SDRF"): + #add column + df[column_name] = "" + builder = GridOptionsBuilder.from_dataframe(df) + builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, singleClickEdit=True) + if fill_method == "Use from child terms": + builder.configure_columns( + column_name, + editable=True, + cellEditor="agSelectCellEditor", + cellEditorParams={"values": child_df['label'].tolist()}, + cellStyle={"background-color": "#ffa478"} + ) + st.session_state["template_df"] = df + + else: # free text + builder.configure_column(column_name, editable=True,cellEditor="agTextCellEditor",cellStyle={"background-color": "#ffa478"}) + st.session_state["template_df"] = df + + gridOptions = builder.build() + + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT, + fit_columns_on_grid_load=False + ) + if grid_return["data"] is not None and not grid_return["data"].equals(st.session_state.get("template_df")): + # User clicked update manually + st.session_state["template_df"] = grid_return["data"] + diff --git a/pages/5_5. Experiment_types.py b/pages/5_5. Experiment_types.py deleted file mode 100644 index 34a3046..0000000 --- a/pages/5_5. Experiment_types.py +++ /dev/null @@ -1,120 +0,0 @@ -import streamlit as st -import ParsingModule -import pandas as pd -import numpy as np -import re -from PIL import Image -import base64 -import io -import warnings -warnings.filterwarnings("ignore") - -# Define the default button color (you can adjust this as desired) -default_color = "#ffa478" -# Define the button CSS styles -button_styles = f""" - background-color: white; - color: {default_color}; - border-radius: 20px; - padding: 10px 20px; - border: none; - text-align: center; - text-decoration: none; - display: inline-block; - font-size: 16px; - margin: 4px 2px; - cursor: pointer; -""" -# Define the button CSS styles when it's clicked -clicked_styles = f""" - background-color: #ffa478; - color: white; -""" -st.set_page_config( - page_title="Experiment types", - layout="wide", - page_icon=":construction:", - menu_items={ - "Get help": "https://github.com/compomics/lesSDRF/issues", - "Report a bug": "https://github.com/compomics/lesSDRF/issues", - }, -) - - -def add_logo(logo_path, width, height): - """Read and return a resized logo""" - logo = Image.open(logo_path) - modified_logo = logo.resize((width, height)) - return modified_logo - -def get_base64_image(image): - img_buffer = io.BytesIO() - image.save(img_buffer, format="PNG") - img_str = base64.b64encode(img_buffer.getvalue()).decode() - return img_str - -my_logo = add_logo(logo_path="final_logo.png", width=149, height=58) - -st.markdown( - f""" - - """, - unsafe_allow_html=True, -) - - - -if "template_df" not in st.session_state: - st.error("No SDRF file was detected. Go to the Home page to select your template.", icon="🚨") -else: - template_df = st.session_state["template_df"] - with st.container(): - st.write("**This is your current SDRF file.**") - st.dataframe(template_df) - - -def update_session_state(df): - st.session_state["template_df"] = df -st.subheader(":construction: *Under development* :construction:") -st.title("""5. Experiment types""") -st.write(""" :rotating_light: -This application is currently in development and the current page is not yet finalized. We are in touch with several members of the involved communities, -but we have not yet decided on a strict template. -If you would like to be a part of this discussion, please use the button in the sidebar to get involved. -""") -url = "https://github.com/bigbio/proteomics-sample-metadata/issues" -button = f'Join the community effort' -with st.sidebar: - st.write(button, unsafe_allow_html=True) - - -st.write("""Some experiment types have an atypical SDRF structure. Here you can find the community-suggested SDRF columns for such experiments.""") - -metaproteomics = st.button('Metaproteomics') -single_cell = st.button('Single cell proteomics') -immunopeptidomics = st.button('Immunopeptidomics') - -meta_proteomics_cols = ["characteristics[environmental material]", "characteristics[organism]", "characteristics[diet]", "characteristics[biome]", "characteristics[environmental condition]"] -for button, suggested_cols in zip([metaproteomics], [meta_proteomics_cols]): - if button: - col1, col2 = st.columns(2) - #check which suggested cols are already in the template and which ones are not - detected_cols = [col for col in suggested_cols if col in template_df.columns] - cols_to_add = [col for col in suggested_cols if col not in template_df.columns] - for i in detected_cols: - with col1: - st.success(f"The suggested column **{i}** is already in your SDRF file.", icon="βœ…") - for i in cols_to_add: - with col1: - st.error(f"The suggested column **{i}** is not in your SDRF file. Do you want to add it?", icon="❌") - with col2: - st.write("Suggested columns:") - for c in cols_to_add: - st.checkbox(f"Add **{c}** to SDRF file", key=c) - diff --git a/pages/5_5. Experiment_types_integration.py b/pages/5_5. Experiment_types_integration.py new file mode 100644 index 0000000..8f52ad0 --- /dev/null +++ b/pages/5_5. Experiment_types_integration.py @@ -0,0 +1,124 @@ +import streamlit as st +import pandas as pd +import numpy as np +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode +import ParsingModule +import common +import re + +st.set_page_config(page_title="SDRF Ontology Mapper", layout="wide") +st.title("Experiment types") +st.write("""This page allows you to annotate proposed metadata elements for single cell proteomics, immunopeptidomics and structural proteomics""") +st.write("""These elements are community suggested. To join the discussion on official SDRF-Proteomics go to: https://github.com/bigbio/proteomics-sample-metadata """) + +common.inject_sidebar_logo() +with st.sidebar: + if st.button("Validate SDRF file before download"): + # Perform validation or conversion + converted_data = ParsingModule.convert_df(template_df) + st.success("SDRF file validated! Ready to download.") + + st.download_button( + label="Download validated SDRF file", + data=converted_data, + file_name="intermediate_SDRF.sdrf.tsv", + mime="text/tab-separated-values" + ) + + st.write("""Please refer to your data and lesSDRF within your manuscript as follows: + *The experimental metadata has been generated using lesSDRF and is available through ProteomeXchange with the dataset identifier [PXDxxxxxxx]*""") + + +# ---------------- SESSION STATE CHECK ------------------- +if "template_df" not in st.session_state: + st.error("Please fill in the template file in the Home page first", icon="🚨") + st.stop() +else: + df = st.session_state["template_df"] + st.write("**This is your current SDRF file:**") + st.dataframe(df, use_container_width=True) + + +# ------------------- EXPERIMENT ANNOTATIONS ------------------- +EXPERIMENT_ANNOTATIONS = { + "Structural proteomics": { + "technology type": {"type": "free_text", "options": ["SDS-gel", "mass photometry", "native MS"]}, + "radiation": {"type": "numeric", "unit": "Gy"} + }, + "Single-cell proteomics": { + "Plate number": {"type": "numeric"}, + "XPos": {"type": "text"}, + "YPos": {"type": "text"}, + "Number of cells sampled": {"type": "numeric"}, + "Gradient time": {"type": "time"}, + "LC column used": {"type": "free_text"}, + "Diameter": {"type": "numeric", "unit": "Β΅m"}, + "Elongicity": {"type": "free_text"}, + "Circularity": {"type": "free_text"}, + "Fluorescence": {"type": "boolean"}, + "Intensity": {"type": "numeric"}, + "Humidity (CellenION)": {"type": "numeric", "unit": "%"}, + "Volume (CellenION)": {"type": "numeric", "unit": "pl"}, + "Trypsin concentration (CellenION)": {"type": "numeric"} + }, + "Immunopeptidomics": { + "MHC allele": {"type": "ontology"}, + "database": {"type": "free_text"} + } +} + +col1, col2 = st.columns(2) +columns_to_add = [] +# --------------- USER SELECT EXPERIMENT -------------------- +with col1: + st.subheader("1. Select experiment type") + experiment_type = st.selectbox("Experiment type:", list(EXPERIMENT_ANNOTATIONS.keys())) + fields = EXPERIMENT_ANNOTATIONS[experiment_type] + +# ---------------- USER SELECT COLUMNS ---------------------- +with col2: + st.subheader("2. Select community suggested columns") + available_columns = list(fields.keys()) + selected_columns = st.multiselect("Columns to add:", available_columns) + +st.write("##") + +# ---------------- INITIALIZE EDITABLE TABLE ------------------- +if selected_columns: + st.subheader("3. Select if these columns are a sample parameter (characteristic) or a run parameter (comment)") + + for col in selected_columns: + radio_key = f"col_type_{col}" + if radio_key not in st.session_state: + st.session_state[radio_key] = "characteristic" #default + column_type = st.radio(f"Select column type of **{col}**", ["characteristic", "comment"], key=f"col_type_{col}") + new_col_name = f"{column_type}[{col}]" + columns_to_add.append(new_col_name) +st.write(columns_to_add) + +if st.button("Add column(s) to SDRF"): + + for col in columns_to_add: + df[col] = "" + +builder = GridOptionsBuilder.from_dataframe(df) +builder.configure_grid_options(enableRangeSelection=True, enableFillHandle=True, singleClickEdit=True) + +builder.configure_columns(columns_to_add, editable=True,cellEditor="agTextCellEditor",cellStyle={"background-color": "#ffa478"}) +st.session_state["template_df"] = df + +gridOptions = builder.build() + +grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, + data_return_mode=DataReturnMode.AS_INPUT, + fit_columns_on_grid_load=False +) +if grid_return["data"] is not None and not grid_return["data"].equals(st.session_state["template_df"]): + # User clicked update manually + st.success("βœ… SDRF updated") + df= grid_return["data"] + st.session_state["template_df"] = df.copy() + st.rerun() \ No newline at end of file diff --git a/pages/6_6. Experimental_design.py b/pages/6_6. Experimental_design.py new file mode 100644 index 0000000..28e4061 --- /dev/null +++ b/pages/6_6. Experimental_design.py @@ -0,0 +1,53 @@ + +import streamlit as st +import pandas as pd +import os +import re +import gzip +import json +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode +from streamlit_tree_select import tree_select + +# Step 1: Paste raw file names +raw_files_text = st.text_area("Paste raw file names (one per line):") +raw_files = [f.strip() for f in raw_files_text.splitlines() if f.strip()] + +# Step 2: Specify design +cols = st.columns(4) +with cols[0]: + n_conditions = st.number_input("Conditions", 1, 20, 2) +with cols[1]: + n_samples = st.number_input("Samples per condition", 1, 50, 1) +with cols[2]: + n_bioreps = st.number_input("Biological replicates", 1, 10, 1) +with cols[3]: + n_fractions = st.number_input("Fractions per sample", 1, 10, 1) + +# Step 3: Labeling +labeled = st.radio("Is this a labeled experiment (e.g. TMT)?", ["Yes", "No"]) +if labeled == "Yes": + label_set = st.multiselect("Labels used (in order)", options=["TMT126", "TMT127N", "TMT127C", "TMT128N", "TMT128C", "TMT129N", "TMT129C", "TMT130N", "TMT130C", "TMT131"]) + +# Step 4: Auto-generate a table for user to edit +import pandas as pd + +expected_rows = len(raw_files) * len(label_set) if labeled == "Yes" else len(raw_files) +data = [] + +sample_id = 1 +for i, raw in enumerate(raw_files): + for j, label in enumerate(label_set if labeled == "Yes" else [None]): + data.append({ + "raw_file": raw, + "label": label or "label free", + "sample_id": f"sample{sample_id}", + "condition": f"condition{(sample_id - 1) // n_samples + 1}", + "bio_rep": ((sample_id - 1) % n_bioreps) + 1, + "fraction": (j % n_fractions) + 1 + }) + sample_id += 1 + +df = pd.DataFrame(data) +edited_df = st.data_editor(df, num_rows="dynamic", use_container_width=True) + +st.success("βœ… This structure can now be used to generate your SDRF JSON.") diff --git a/pages/7_7.Grouping.py b/pages/7_7.Grouping.py new file mode 100644 index 0000000..939d520 --- /dev/null +++ b/pages/7_7.Grouping.py @@ -0,0 +1,599 @@ + +import streamlit as st +import pandas as pd +import os +import re +import gzip +import json +from st_aggrid import AgGrid, GridOptionsBuilder, GridUpdateMode, DataReturnMode +from streamlit_tree_select import tree_select + +@st.cache_data +def load_data(): + """Load gzipped JSON data and Unimod CSV""" + folder_path = os.path.join(local_dir, "data") + unimod_path = os.path.join(local_dir, "ontology", "unimod.csv") + data = {} + for filename in os.listdir(folder_path): + if re.search(r"archaea|bacteria|eukaryota|virus|unclassified|other sequences", filename): + continue + file_path = os.path.join(folder_path, filename) + if filename.endswith(".json.gz"): + try: + with gzip.open(file_path, "rb") as f: + json_str = f.read().decode('utf-8') + try: + data[filename.replace(".json.gz", "")] = json.loads(json_str) + except json.JSONDecodeError: + st.error(f"Error decoding JSON in file {file_path}") + except gzip.BadGzipFile: + st.error(f"Error reading {file_path}: not a gzipped file") + else: + st.warning(f"Skipping {file_path}: not a gzipped file") + + unimod = pd.read_csv(unimod_path, sep="\t") + return data, unimod +def merge_shared_and_group_metadata(edited_shared_df: pd.DataFrame, edited_group_df: pd.DataFrame) -> pd.DataFrame: + """ + Merge shared and group-specific metadata into one table. + Group-specific values take precedence over shared values. + + Parameters: + - edited_shared_df: DataFrame with 1 row of shared metadata (index = 'sample') + - edited_group_df: DataFrame with one row per sample group (index = 'sample') + + Returns: + - merged_df: Final merged DataFrame, one row per sample group + """ + # Reset indices to use 'sample' as column + shared = edited_shared_df.reset_index() + group = edited_group_df.reset_index() + + # Broadcast shared metadata to each sample group + shared_expanded = pd.DataFrame({ + col: shared.at[0, col] for col in shared.columns if col != "sample" + }, index=group["sample"]) + shared_expanded.reset_index(inplace=True) + shared_expanded.rename(columns={"index": "sample"}, inplace=True) + + # Merge group-specific metadata + merged_df = pd.merge( + shared_expanded, + group, + on="sample", + how="left", + suffixes=("", "_group") + ) + + return merged_df +def build_condition_descriptions_ui(label: str, parameters: list[str], key_prefix: str = "") -> dict: + st.subheader(label) + n_conditions = st.number_input( + f"How many conditions for {label.lower()}?", + min_value=1, value=2, step=1, + key=f"{key_prefix}_n_conditions" + ) + + use_custom_names = st.checkbox( + "Name each condition manually", + value=True, + key=f"{key_prefix}_use_custom_names" + ) + + set_columns_per_group = st.checkbox( + "Set defining metadata columns per condition", + value=True, + key=f"{key_prefix}_set_columns_per_group" + ) + + global_columns = [] + if not set_columns_per_group: + global_columns = st.multiselect( + "Defining metadata column across all conditions", + parameters, + key=f"{key_prefix}_global_columns" + ) + col1, col2 = st.columns(2) + descriptions = {} + for i in range(n_conditions): + if use_custom_names: + with col1: + name = st.text_input( + f"Condition name #{i+1}", + value="", + key=f"{key_prefix}_name_{i}" + ) + name = name.strip() or f"{key_prefix}_group_{i+1}" + else: + name = f"{key_prefix}_group_{i+1}" + + if set_columns_per_group: + with col2: + cols = st.multiselect( + f"Columns for {name}", + parameters, + key=f"{key_prefix}_cols_{i}" + ) + else: + cols = global_columns + + descriptions[name] = { + "name": name, + "column": cols + } + + if st.checkbox("Save and preview", key=f"{key_prefix}_save_preview"): + st.session_state[f"{key_prefix}_descriptions"] = descriptions + st.success("βœ”οΈ Metadata saved.") + + preview_df = pd.DataFrame([ + {"Group": v["name"], "Metadata columns": ", ".join(v["column"])} + for v in descriptions.values() + ]) + st.dataframe(preview_df, use_container_width=True) + + return descriptions + +def expand_columns_with_duplicates(final_chars, factor_values, dup_chars): + for char in dup_chars: + is_factor = char in factor_values + i = 2 + while True: + new_col = f"{char}_{i}" + if is_factor and new_col not in factor_values: + factor_values.add(new_col) + if new_col not in final_chars: + final_chars.append(new_col) + break + i += 1 + return final_chars, factor_values + +def build_metadata_table(df: pd.DataFrame, char_list: list[str], data_dict: dict, label: str, key_prefix: str = ""): + column_config = {} + for char in char_list: + base_char = re.sub(r'_\d+$', '', char) + ontology_key = f"all_{base_char.replace(' ', '_')}_elements" + options = set(data_dict.get(ontology_key, [])) + options = [opt for opt in options if opt is not None] + if options: + column_config[char] = st.column_config.SelectboxColumn(label=char, options=sorted(options), help="Ontology terms") + else: + column_config[char] = st.column_config.TextColumn(label=char) + + form_key = f"{key_prefix}_form_{label}" + + with st.form(form_key): + edited_df = st.data_editor(df, column_config=column_config, use_container_width=True) + if st.form_submit_button(f"βœ… Save {label} metadata"): + st.session_state[f"{key_prefix}_{label}_metadata_df"] = edited_df + st.session_state[f"{key_prefix}_{label}_done"] = True + return edited_df + +def edit_mapping_table_aggrid(df, label_options): + """ + Shows editable AgGrid table for assigning labels per file. + Returns updated mapping DataFrame after clicking Update. + """ + df = df.copy() + df.fillna("", inplace=True) + cell_style = {"background-color": "#ffa478"} + + builder = GridOptionsBuilder.from_dataframe(df) + builder.configure_grid_options( + pagination=True, + paginationPageSize=500, + enableRangeSelection=True, + enableFillHandle=True, + suppressMovableColumns=True, + singleClickEdit=True + ) + # builder.configure_pagination(paginationAutoPageSize=False, paginationPageSize=500) + builder.configure_default_column(filterable=True, sortable=True, resizable=True) + for col in df.columns: + if col == "File name": + builder.configure_column(col, editable=False) + else: + builder.configure_column( + col, + editable=True, + cellEditor="agSelectCellEditor", + cellEditorParams={"values": [""] + label_options}, + cellStyle=cell_style + ) + + + + gridOptions = builder.build() + + grid_return = AgGrid( + df, + gridOptions=gridOptions, + update_mode=GridUpdateMode.MANUAL, # user must click Update + data_return_mode=DataReturnMode.AS_INPUT, + fit_columns_on_grid_load=False, + height=600 + ) + + return grid_return["data"] +st.set_page_config(page_title="Flexible SDRF Generator", layout="wide") +st.title("πŸ§ͺ Flexible SDRF Generator") + +# Load data dictionary and validators +if "data_dict" not in st.session_state: + st.info("πŸ”„ Loading ontology data dictionary for the first time...") + data_dict, unimod = load_data() # <-- from @st.cache_data + st.session_state["data_dict"] = data_dict + st.session_state["unimod"] = unimod +else: + data_dict = st.session_state["data_dict"] + unimod = st.session_state["unimod"] + + + +# --- Step 0: Choose Template --- +local_dir = os.path.dirname(os.path.dirname(__file__)) +species = ["", "human", "cell-line", "default", "invertebrates", "plants", "vertebrates"] +selected_species = st.selectbox( + "Select a species for the SDRF template:", + species, + help="This selection impacts the default columns in your SDRF template." +) + +if selected_species: + folder_path = os.path.join(local_dir, "templates") + template_path = os.path.join(folder_path, f"sdrf-{selected_species}.sdrf.tsv") + template_df = pd.read_csv(template_path, sep="\t") + REQUIRED_COLS = template_df.columns.tolist() + st.session_state["required_columns"] = REQUIRED_COLS +else: + REQUIRED_COLS = [] + +VALIDATORS = { + "age": { + "pattern": re.compile(r"^\d+(Y(\d+M(\d+D)?)?|M(\d+D)?|W|\d+Y-\d+Y)$"), + "example": "40Y, 40Y5M2D, 8W, 40Y-85Y" + }, + "sex": { + "pattern": re.compile(r"^(M|F|X)$"), + "example": "M, F, or X" + }, + "individual": { + "pattern": re.compile(r"^\d+$"), + "example": "A positive integer (e.g., 1, 12, 345)" + } +} + +# Sample-level columns +SAMPLE_ONTOLOGY_PARAMETERS = ["organism", "ancestry category", "cell", "cell line", "disease", "developmental stage", "enrichment process", "organism part"] +SAMPLE_FREE_PARAMETERS = ["age", "sex", "individual", "compound", "compound concentration", "synthetic peptide"] +ALL_SAMPLE_PARAMETERS = SAMPLE_ONTOLOGY_PARAMETERS + SAMPLE_FREE_PARAMETERS +# Run-level columns +RUN_ONTOLOGY_PARAMETERS = ["alkylation reagent", "dissociation method", "instrument", "fractionation method", "reduction reagent"] +RUN_FREE_PARAMETERS = ["collision energy", "fragment mass tolerance", "precursor mass tolerance"] +RUN_LIST_PARAMETERS = ["cleavage agent details", "depletion"] +ALL_RUN_PARAMETERS = RUN_ONTOLOGY_PARAMETERS + RUN_FREE_PARAMETERS + RUN_LIST_PARAMETERS +ALL_RUN_PARAMETERS = [param for param in ALL_RUN_PARAMETERS if param != "data file"] +OTHER_PARAMS = ['data file', 'biological replicate', 'technical replicate', 'fraction identifier', 'label'] +ALL_PARAMETERS = ALL_SAMPLE_PARAMETERS + ALL_RUN_PARAMETERS + OTHER_PARAMS +# Step: Describe Biological Conditions +with st.expander("Define Biological Conditions"): + condition_descriptions = build_condition_descriptions_ui("Define Biological Conditions", ALL_SAMPLE_PARAMETERS, key_prefix="bio") + +with st.expander("Add sample metadata"): + if "bio_descriptions" not in st.session_state: + st.warning("Please define biological conditions first.") + st.stop() + + factor_values = set() + bio_descriptions = st.session_state["bio_descriptions"] + for v in bio_descriptions.values(): + factor_values.update(set(v["column"])) + + group_names = list(bio_descriptions.keys()) + + filtered_chars = [char for char in ALL_SAMPLE_PARAMETERS if f"characteristics[{char}]" not in REQUIRED_COLS] + sel_char = st.multiselect("Select additional metadata columns to annotate", options=filtered_chars, key="bio_sel_char_sample") + final_chars = sel_char.copy() + for col in REQUIRED_COLS: + if 'replicate' in col: + continue + if col.startswith("characteristics[") and col.endswith("]"): + inner = col[len("characteristics["):-1] + if inner not in final_chars: + final_chars.append(inner) + + dup_chars = st.multiselect("Is there any parameter you would need to annotate multiple times like e.g. two organisms within one sample?", options=final_chars, key="bio_dup_chars") + final_chars, factor_values = expand_columns_with_duplicates(final_chars, factor_values, dup_chars) + + # Shared metadata table + sample_chars = set(final_chars) - factor_values + shared_df = pd.DataFrame({char: [""] for char in sorted(sample_chars)}) + shared_df["sample"] = ["shared"] + shared_df = shared_df.set_index("sample") + st.write('Annotate metadata shared amongst all biological conditions') + edited_shared_df = build_metadata_table(shared_df, sample_chars, data_dict, "shared", key_prefix="sample") + + # Group-specific table + group_df = pd.DataFrame({char: ["" for _ in group_names] for char in factor_values}) + group_df["sample"] = group_names + group_df = group_df.set_index("sample") + st.write('Annotate metadata specific to each biological condition') + edited_group_df = build_metadata_table(group_df, factor_values, data_dict, "group", key_prefix="sample") + + # Final merge + validation + if st.session_state.get("sample_shared_done") and st.session_state.get("sample_group_done"): + bio_merged_df = merge_shared_and_group_metadata(st.session_state["sample_shared_metadata_df"], st.session_state["sample_group_metadata_df"]) + st.dataframe(bio_merged_df) + st.session_state["sample_shared_done"] = False + st.session_state["sample_group_done"] = False + st.session_state["bio_merged_df"] = bio_merged_df + for df, label in zip([st.session_state["sample_shared_metadata_df"], st.session_state["sample_group_metadata_df"]], ["Shared", "Group"]): + for field, validator in VALIDATORS.items(): + if field in df.columns: + values = df[field].dropna().astype(str).unique() + invalid = [v for v in values if not validator["pattern"].match(v)] + if invalid: + st.warning(f"🚨 Invalid values in **{field}** ({label}):") + for v in invalid: + st.write(f"- `{v}` β†’ expected: {validator['example']}") + else: + st.success(f"βœ… All values in **{field}** ({label}) are valid!") + +with st.expander('Sample structure'): + #how many samples, how many bioreps, to which condition? + conditions = condition_descriptions.keys() + col1, col2 = st.columns(2) + with col1: + #how many smaples per condition do you have? + n_samples = st.number_input( + "How many samples per condition?", + min_value=1, value=2, step=1, + help="This will determine how many sample nodes are created under each condition." + ) + with col2: + n_bioreps = st.number_input( + "How many biological replicates per sample?", + min_value=1, value=1, step=1, + help="This will determine how many biological replicate nodes are created under each sample." + ) + # Initial design rows + rows = [] + for cond in conditions: + for s in range(1, n_samples + 1): + sample_id = f"{cond}_S{s}" + for b in range(1, n_bioreps + 1): + rows.append({ + "Condition": cond, + "Sample ID": sample_id, + "BioRep ID": f"{sample_id}_B{b}" + }) + + bio_experimental_design = pd.DataFrame(rows) + + column_config = { + "Condition": st.column_config.SelectboxColumn( + label="Condition", + options=conditions, + help="Choose one of the predefined biological conditions." + ), + "Samples": st.column_config.NumberColumn(min_value=1, step=1), + "BioReplicates per Sample": st.column_config.NumberColumn(min_value=1, step=1) + } + + st.caption('Visual representation of your experimental design, feel free to edit the table below. ') + edited_experimental_design = st.data_editor( + bio_experimental_design, + column_config=column_config, + use_container_width=True, + num_rows="dynamic" + ) + if st.button("βœ… Confirm Design Table"): + st.session_state["experimental_design_df"] = edited_experimental_design + st.success("Design saved! Here's your final experimental design table:") + st.dataframe(edited_experimental_design, use_container_width=True) +with st.expander("Define Technical Conditions"): + technical_descriptions = build_condition_descriptions_ui('Define Technical Conditions', ALL_RUN_PARAMETERS, key_prefix="tech") + +with st.expander("Add technical metadata"): + if "tech_descriptions" not in st.session_state: + st.warning("Please define technical conditions first.") + st.stop() + tech_descriptions = st.session_state["tech_descriptions"] + factor_values = set() + for v in tech_descriptions.values(): + factor_values.update(set(v["column"])) + + group_names = list(tech_descriptions.keys()) + filtered_chars = [char for char in ALL_RUN_PARAMETERS if f"comment[{char}]" not in REQUIRED_COLS] + sel_char = st.multiselect("Select additional metadata", options=filtered_chars, key="tech_sel_char_sample") + final_chars = sel_char.copy() + for col in REQUIRED_COLS: + if any(keyword in col for keyword in ['replicate', 'data file', 'fraction', 'label']): + continue + if col.startswith("comment[") and col.endswith("]"): + inner = col[len("comment["):-1] + if inner not in final_chars: + final_chars.append(inner) + + dup_chars = st.multiselect("Allow multiple values for these columns?", options=final_chars, key="tech_dup_chars") + final_chars, factor_values = expand_columns_with_duplicates(final_chars, factor_values, dup_chars) + + # Shared metadata table + sample_chars = set(final_chars) - factor_values + shared_df = pd.DataFrame({char: [""] for char in sorted(sample_chars)}) + shared_df["sample"] = ["shared"] + shared_df = shared_df.set_index("sample") + edited_shared_df = build_metadata_table(shared_df, sample_chars, data_dict, "shared", key_prefix="run") + + # Group-specific table + group_df = pd.DataFrame({char: ["" for _ in group_names] for char in factor_values}) + group_df["sample"] = group_names + group_df = group_df.set_index("sample") + edited_group_df = build_metadata_table(group_df, factor_values, data_dict, "group", key_prefix="run") + + if st.session_state.get("run_shared_done") and st.session_state.get("run_group_done"): + tech_merged_df = merge_shared_and_group_metadata(st.session_state["run_shared_metadata_df"], st.session_state["run_group_metadata_df"]) + st.dataframe(tech_merged_df) + st.session_state["tech_merged_df"] = tech_merged_df + st.session_state["run_shared_done"] = False + st.session_state["run_group_done"] = False + +with st.expander('Run structure'): + raw_files_text = st.text_area("Paste raw file names (one per line):", placeholder="file1.raw\nfile2.raw\n...") + raw_files = [f.strip() for f in raw_files_text.splitlines() if f.strip()] + st.write(f"Detected {len(raw_files)} raw files.") + st.write("We encourage informative filenames to ease the assignment of metadata. Is there any part of your raw file names that maps to a specific metadata field?") + #take one example file name, try splitting it on various delimiters like ; _ " ", and then ask the user to select the parts that correspond to sample, fraction, technical replicate, etc. + if raw_files: + example_filename = raw_files[0] + st.write(f"Example raw file name: `{example_filename}`") + st.write("We will try to extract metadata from the raw file names and use your first raw file as example") + sections = re.split(r'[;_.-/\ ]', example_filename) + #make a dataframe with the sections as one column, the possible parameters with a dropdown as the second column + sections_df = pd.DataFrame(sections, columns=["Section"]) + sections_df["Parameter"] = "" + sections_column_config = { + "Parameter": st.column_config.SelectboxColumn(options=["", "Sample", "Fraction", "Technical replicate", "Biological replicate", "Label"]) + } + + edited_sections_df = st.data_editor(sections_df, use_container_width=True, column_config=sections_column_config, num_rows="dynamic") + + if st.button("βœ… Save Section Parameters"): + st.session_state["edited_sections_df"] = edited_sections_df + st.success("Section parameters saved! You can now assign them to your raw files.") + + # Step 2: Specify design + cols = st.columns(4) + conditions = condition_descriptions.keys() + with cols[0]: + n_samples = st.number_input("Samples per condition", 1, 50, 1) + with cols[1]: + n_bioreps = st.number_input("Biological replicates", 1, 10, 1) + with cols[2]: + n_techreps = st.number_input("Technical replicates", 1, 10, 1) + with cols[3]: + n_fractions = st.number_input("Fractions per sample", 1, 10, 1) + + # Step 3: Labeling + labeled = st.radio("Is this a labeled experiment (e.g. TMT)?", ["Yes", "No"]) + if labeled == "Yes": + label_set = st.multiselect("Labels used (in order)", options=["TMT126", "TMT127N", "TMT127C", "TMT128N", "TMT128C", "TMT129N", "TMT129C", "TMT130N", "TMT130C", "TMT131"]) + + # Step 4: Auto-generate a table for user to edit + expected_rows = len(raw_files) * len(label_set) if labeled == "Yes" else len(raw_files) + data = [] + + sample_id = 1 + for i, raw in enumerate(raw_files): + for j, label in enumerate(label_set if labeled == "Yes" else [None]): + data.append({ + "raw_file": raw, + "label": label or "label free", + "sample_id": f"sample{sample_id}", + "condition": f"condition{(sample_id - 1) // n_samples + 1}", + "bio_rep": ((sample_id - 1) % n_bioreps) + 1, + "fraction": (j % n_fractions) + 1 + }) + sample_id += 1 + + df = pd.DataFrame(data) + edited_df = st.data_editor(df, num_rows="dynamic", use_container_width=True) + + st.success("βœ… This structure can now be used to generate your SDRF JSON.") + + + + + +cola, colb, colc = st.columns(3) +with cola: + sort_option = st.multiselect('According to which level are your raw files ordered? Click in order', options=['Sample', 'Biological replicate', 'Technical replicate', 'Fraction', 'Label']) +with colb: + labels = st.multiselect('Which labels are in your raw files?', options=sorted(set(data_dict.get("all_label_elements", [])))) + if labels != ['label free sample']: + label_param = st.multiselect('Based on which parameter(s) were your samples labeled?', options=ALL_PARAMETERS) + runs = st.selectbox('Are the same labels used in all runs?', options=['Yes', 'No'], index=0) +with colc: + pooling = st.selectbox('Were any samples pooled into the same raw file?', options=['Yes', 'No'], index=1) + if pooling == 'Yes': + pooling_param = st.multiselect('Based on which parameter(s) were your samples pooled?', options=ALL_PARAMETERS) + +if labels==['label free sample'] and pooling=='No': + singleshot = True + st.success('You have a one sample to one raw file experiment, we will merge your raw files to the experimental design based on your ordering') + + + +conditions = condition_descriptions.keys() +col1, col2, col3, col4 = st.columns(4) + +with col3: + n_techreps = st.number_input( + "How many technical replicates per biological replicate?", + min_value=1, value=1, step=1, + help="This will determine how many technical replicate nodes are created under each biological replicate." + ) +with col4: + n_fractions = st.number_input( + "How many fractions?", + min_value=1, value=1, step=1, + help="This will determine how many fraction nodes are created under each sample." + ) +# Initial design rows +rows = [] +for cond in conditions: + for s in range(1, n_samples + 1): + sample_id = f"{cond}_S{s}" + for b in range(1, n_bioreps + 1): + bio_id = f"{sample_id}_B{b}" + for t in range(1, n_techreps + 1): + tech_id = f"{bio_id}_T{t}" + for f in range(1, n_fractions + 1): + rows.append({ + "Condition": cond, + "Sample ID": sample_id, + "BioRep ID": bio_id, + "TechRep ID": tech_id, + "Frac ID": f"{tech_id}_F{f}" + }) + +experimental_design = pd.DataFrame(rows) + +column_config = { + "Condition": st.column_config.SelectboxColumn( + label="Condition", + options=conditions, + help="Choose one of the predefined biological conditions." + ), + "Samples": st.column_config.NumberColumn(min_value=1, step=1), + "BioReplicates per Sample": st.column_config.NumberColumn(min_value=1, step=1), + "TechReplicates per BioRep": st.column_config.NumberColumn(min_value=1, step=1) +} + +st.caption('Visual representation of your experimental design, feel free to edit the table below. ') +edited_experimental_design = st.data_editor( + experimental_design, + column_config=column_config, + use_container_width=True, + num_rows="dynamic" +) +st.write(label_param, labels) +if st.button("βœ… Confirm Design Table"): + st.session_state["experimental_design_df"] = edited_experimental_design + st.success("Design saved! Here's your final experimental design table:") + if singleshot: + sort_mapping = { + "Sample": "Sample ID", + "Biological replicate": "BioRep ID", + "Technical replicate": "TechRep ID", + "Fraction": "Frac ID", + "Label": "Label" + } + sort_columns = [sort_mapping.get(col, col) for col in sort_option if sort_mapping.get(col, col) in edited_experimental_design.columns] + edited_experimental_design = edited_experimental_design.sort_values(by=sort_columns).reset_index(drop=True) + edited_experimental_design['data file'] = raw_files + st.dataframe(edited_experimental_design, use_container_width=True) + else: + st.write('We will automatically assign your raw files to the experimental design based on your ordering and the number of samples, biological replicates, technical replicates, fractions and labels you have selected.') + #first get label distribution + grouped_label = edited_experimental_design.groupby(label_param) \ No newline at end of file diff --git a/requirements.txt b/requirements.txt index 2c87967..0623556 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,5 +1,5 @@ -pronto== 2.5.3 -streamlit==1.19.0 +# pronto== 2.5.3 +streamlit streamlit-aggrid==0.3.4.post3 streamlit-tree-select==0.0.5 jsonschema==4.17.0 diff --git a/temp_sdrf.tsv b/temp_sdrf.tsv new file mode 100644 index 0000000..22c09d1 --- /dev/null +++ b/temp_sdrf.tsv @@ -0,0 +1,8 @@ +source name characteristics[organism] characteristics[organism part] characteristics[biological replicate] characteristics[cell line] characteristics[cell type] characteristics[disease] assay name technology type comment[cleavage agent details] comment[cleavage agent details] comment[data file] comment[fraction identifier] comment[fragment mass tolerance] comment[instrument] comment[label] comment[modification parameters] comment[precursor mass tolerance] comment[technical replicate] comment[tool metadata] +None None None None None None None None None NT=2-iodobenzoate a None None None None lesSDRF v0.1.0 +None None None None None None None None None None b None None None None lesSDRF v0.1.0 +None None None None None None None None None None c None None None None lesSDRF v0.1.0 +None None None None None None None None None None d None None None None lesSDRF v0.1.0 +None None None None None None None None None None e None None None None lesSDRF v0.1.0 +None None None None None None None None None None f None None None None lesSDRF v0.1.0 +None None None None None None None None None None g None None None None lesSDRF v0.1.0 diff --git a/test.ipynb b/test.ipynb index bb61421..9b1d97d 100644 --- a/test.ipynb +++ b/test.ipynb @@ -221,7 +221,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.4" + "version": "3.6.9" }, "orig_nbformat": 4 }, diff --git a/todo b/todo new file mode 100644 index 0000000..b7b4551 --- /dev/null +++ b/todo @@ -0,0 +1,2 @@ +validation vn columns zoals replicates, age, time, etc. +validation van free text \ No newline at end of file diff --git a/unimod_dict.json.gz b/unimod_dict.json.gz new file mode 100644 index 0000000..8895417 Binary files /dev/null and b/unimod_dict.json.gz differ