DESCRIPTION

Package: methrix
Title: Fast and efficient summarization of generic bedGraph files from Bisufite sequencing
Version: 0.99.2
Authors@R: c(
  person("Anand","Mayakonda", role = c("aut", "cre"), email = "anand_mt@hotmail.com"),
  person("Reka","Toth", role = "aut", email = "r.toth@dkfz.de"),
  person("Maximilian","Schönung", role = "ctb"),
  person("Pavlo","Lutsik", role = "ctb"),
  person("Joschka","Hey", role = "ctb"))
Description: Bedgraph files generated by Bisulfite pipelines often come in various flavors. Critical downstream step requires summarization of these files into methylation/coverage matrices. This step of data aggregation is done by Methrix, including many other useful downstream functions.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.6), data.table (>= 1.12.4), SummarizedExperiment
Imports: DelayedArray, HDF5Array, BSgenome, rjson, DelayedMatrixStats, parallel, methods, ggplot2, matrixStats
RoxygenNote: 6.1.1
Suggests: 
    knitr,
    rmarkdown,
    DSS,
    bsseq,
    plotly,
    BSgenome.Mmusculus.UCSC.mm9,
    MafDb.1Kgenomes.phase3.GRCh38,
    MafDb.1Kgenomes.phase3.hs37d5,
    GenomicScores,
    Biostrings,
    RColorBrewer
VignetteBuilder: knitr
biocViews: DNAMethylation, Sequencing, Coverage