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Commits on Jun 30, 2025

• Added cwlviewer for ACT-Seq

  lutsik

  authored
  6a2df36

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Commits on Jun 27, 2025

• added cwlviewer for the CUTNRUN workflow

  lutsik

  authored
  7b935a0

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• added cwlviewer for the ChIP-Seq workflow

  lutsik

  authored
  5655573

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Commits on Aug 2, 2020

• update test

  KerstenBreuer

  committed
  8526687

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• added macs2 to CUTnRUN pipeline

  KerstenBreuer

  committed
  0cee439

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Commits on Apr 24, 2020

• Create .zenodo.json

  KerstenBreuer

  authored
  e2f3e99

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Commits on Dec 10, 2019

• added ACTseq spike-in variant

  KerstenBreuer

  committed
  7828cbb

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Commits on Nov 26, 2019

• set default value of is_paired_end to true

  KerstenBreuer

  committed
  8a5fb27

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• fix formating of doc

  KerstenBreuer

  committed
  51b2d00

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• update packed

  KerstenBreuer

  committed
  241600e

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• move graph_images to dedicated dir

  KerstenBreuer

  committed
  016bf7b

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• correct wrong item type

  KerstenBreuer

  committed
  26455b6

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• update workflow graphs and packed workflows

  KerstenBreuer

  committed
  8c4bd38

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• remove unused parameter

  KerstenBreuer

  committed
  e8b17d1

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• resolve issue with uncompatible types

  KerstenBreuer

  committed
  6d0ce8b

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• made bin_size required as default is specified

  KerstenBreuer

  committed
  a6fec43

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• added documentation of input params

  KerstenBreuer

  committed
  6a52cad

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• added chromosome size examples

  KerstenBreuer

  committed
  c3d97cd

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• reintroduce ChIPmentation as seperate pipeline as deduplication needed

  KerstenBreuer

  committed
  425735d

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• make ignoreForNormalization optional

  KerstenBreuer

  committed
  328b94a

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• Adaptors specified globally for all fastqs, ignoreNormalization as string

  KerstenBreuer

  committed
  5740e69

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Commits on Nov 6, 2019

• update packed and workflow graph images

  KerstenBreuer

  committed
  7361fa2

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• fix fastqc output params

  KerstenBreuer

  committed
  835245b

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• remove duplicate removal beause of Tn5 preference

  KerstenBreuer

  committed
  b8c0863

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• rename pipelines

  KerstenBreuer

  committed
  ffd9eaf

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Commits on Oct 10, 2019

• rename packed

  KerstenBreuer

  committed
  503df61

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• update workflow images and packed wf

  KerstenBreuer

  committed
  087ab18

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• Merge branch 'master' of https://github.com/CompEpigen/ChIPseq_workflows

  KerstenBreuer

  committed
  75490fc

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• update workflow images and packed wf

  KerstenBreuer

  committed
  df6c17b

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Commits on Aug 13, 2019

• Merge pull request #1 from CompEpigen/add-license-1

  Show description for f249c81
  KerstenBreuer

  authored
  f249c81

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• added Licence

  KerstenBreuer

  authored
  a57580d

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• clean comments

  KerstenBreuer

  committed
  0d89ff0

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• specify scripts in InitialWorkDirRequirement

  KerstenBreuer

  committed
  db0b575

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Commits on Aug 7, 2019

• update images

  KerstenBreuer

  committed
  50fc7f4

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• renaming

  KerstenBreuer

  committed
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