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CIVET-CC-mask.txt
CIVET-CC-mask.txt
 
 
CIVET_2.0_mask_left.txt
CIVET_2.0_mask_left.txt
 
 
CIVET_2.0_mask_left_short.txt
CIVET_2.0_mask_left_short.txt
 
 
CIVET_2.0_mask_right.txt
CIVET_2.0_mask_right.txt
 
 
CIVET_2.0_mask_right_short.txt
CIVET_2.0_mask_right_short.txt
 
 
LICENSE
LICENSE
 
 
MAGeT-QC.sh
MAGeT-QC.sh
 
 
MAGeT-object-QC.sh
MAGeT-object-QC.sh
 
 
README.md
README.md
 
 
affine_xfm_to_rigid.sh
affine_xfm_to_rigid.sh
 
 
antsRegistration-coregister-average-withN4.sh
antsRegistration-coregister-average-withN4.sh
 
 
antsRegistration-coregister-average.sh
antsRegistration-coregister-average.sh
 
 
antsRegistration_affine.sh
antsRegistration_affine.sh
 
 
antsRegistration_affine_SyN.sh
antsRegistration_affine_SyN.sh
 
 
ants_generate_iterations.py
ants_generate_iterations.py
 
 
ants_label_qc_image.sh
ants_label_qc_image.sh
 
 
autocrop+
autocrop+
 
 
bestlinreg_g
bestlinreg_g
 
 
bestlinreg_maget
bestlinreg_maget
 
 
clean_and_center_minc.pl
clean_and_center_minc.pl
 
 
collect_jacobian_volumes.sh
collect_jacobian_volumes.sh
 
 
collect_volumes.sh
collect_volumes.sh
 
 
create_civet_image.sh
create_civet_image.sh
 
 
deparcellate_civet_data.py
deparcellate_civet_data.py
 
 
intrasubject-N4_extract.sh
intrasubject-N4_extract.sh
 
 
iterativeN4.sh
iterativeN4.sh
 
 
iterativeN4_2.sh
iterativeN4_2.sh
 
 
iterativeN4_multispectral.sh
iterativeN4_multispectral.sh
 
 
labels_colors.map
labels_colors.map
 
 
make-t1t2-hybrid-image.sh
make-t1t2-hybrid-image.sh
 
 
mincmontage
mincmontage
 
 
mouse-preprocessing-v2.sh
mouse-preprocessing-v2.sh
 
 
mouse-preprocessing-v4.sh
mouse-preprocessing-v4.sh
 
 
mouse-preprocessing-v5.sh
mouse-preprocessing-v5.sh
 
 
mouse-preprocessing-v5_pv6_brkraw_nifti.sh
mouse-preprocessing-v5_pv6_brkraw_nifti.sh
 
 
mouse-preprocessing-v5_pv6_dicom.sh
mouse-preprocessing-v5_pv6_dicom.sh
 
 
mouse-preprocessing-v6_pv5_dicom.sh
mouse-preprocessing-v6_pv5_dicom.sh
 
 
mouse-preprocessing-v6_pv6_brkraw_nifti.sh
mouse-preprocessing-v6_pv6_brkraw_nifti.sh
 
 
mouse-preprocessing-v6_pv6_dicom.sh
mouse-preprocessing-v6_pv6_dicom.sh
 
 
mouse-preprocessing-v7_pv6_brkraw_nifti.sh
mouse-preprocessing-v7_pv6_brkraw_nifti.sh
 
 
mouse-preprocessing-v8_pv6_brkraw_nifti.sh
mouse-preprocessing-v8_pv6_brkraw_nifti.sh
 
 
neonate-preprocessing-v2.sh
neonate-preprocessing-v2.sh
 
 
neonate-preprocessing.sh
neonate-preprocessing.sh
 
 
pad_recrop_minc.sh
pad_recrop_minc.sh
 
 
parcellate_civet_data.py
parcellate_civet_data.py
 
 
preprocess_t2_with_t1_priors.sh
preprocess_t2_with_t1_priors.sh
 
 
rat-preprocessing-v2.sh
rat-preprocessing-v2.sh
 
 
rat-preprocessing-v3.sh
rat-preprocessing-v3.sh
 
 
rat-preprocessing-v7.sh
rat-preprocessing-v7.sh
 
 
rat-preprocessing.sh
rat-preprocessing.sh
 
 
smooth_downsample.sh
smooth_downsample.sh
 
 
t2-slab-preprocess.sh
t2-slab-preprocess.sh
 
 
t2star_fit.py
t2star_fit.py
 
 
t2star_fit_simpleitk.py
t2star_fit_simpleitk.py
 
 
xfm2det
xfm2det
 
 

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minc-toolkit-extras

Extra miscellaneous scripts for minc-toolkit

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Extra miscellaneous scripts for minc-toolkit

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