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Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/

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Clinical-Genomics/fusion-report

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Fusion report

Build Status MIT License

This is a python script for generating interactive summary report from output of fusion detection tools. Currently tools below are supported:

  • STAR-Fusion
  • EricScript
  • FusionCatcher
  • Pizzly
  • Squid
  • Arriba (coming)

Fusion-report is part of a bigger project nf-core/rnafusion which a pipeline for detecting fusion genes from RNA-seq data. Running the script is simple, just type:

bin/fusion-report --help

Installation

pip3 install -r requirements.txt

Example summary report