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lines changed Original file line number Diff line number Diff line change @@ -87,7 +87,7 @@ The `sbatch` file `workflow.sh` will reference the `CWL` file `workflow.cwl` whe
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# SBATCH --mem-per-cpu=1G
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# SBATCH --nodes=1
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# SBATCH --cpus-per-task=2
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- # SBATCH --partition=<partition name>
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+ # SBATCH --partition=small
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source /projappl/< project_nnnnnnn> /venv/bin/activate
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@@ -98,7 +98,7 @@ export TOIL_SLURM_ARGS="--account=project_nnnnnnn --partition=small"
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export CWL_SINGULARITY_CACHE=$WORKDIR /singularity
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unset XDG_RUNTIME_DIR
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- TOIL_SLURM_ARGS=" --account=<project_nnnnnnn> --partition=<partition name> " toil-cwl-runner \
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+ TOIL_SLURM_ARGS=" --account=<project_nnnnnnn> --partition=small " toil-cwl-runner \
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--jobStore $WORKDIR /< job store name> \
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--workDir $SCRATCH /< work dir name> \
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--tmpdir-prefix $TMPDIR /< tmp name> \
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