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teemukatajamr-c
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set real partition name as example
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docs/computing/running/toil-cwl-runner.md

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@@ -87,7 +87,7 @@ The `sbatch` file `workflow.sh` will reference the `CWL` file `workflow.cwl` whe
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#SBATCH --mem-per-cpu=1G
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#SBATCH --nodes=1
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#SBATCH --cpus-per-task=2
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#SBATCH --partition=<partition name>
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#SBATCH --partition=small
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source /projappl/<project_nnnnnnn>/venv/bin/activate
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@@ -98,7 +98,7 @@ export TOIL_SLURM_ARGS="--account=project_nnnnnnn --partition=small"
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export CWL_SINGULARITY_CACHE=$WORKDIR/singularity
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unset XDG_RUNTIME_DIR
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TOIL_SLURM_ARGS="--account=<project_nnnnnnn> --partition=<partition name>" toil-cwl-runner \
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TOIL_SLURM_ARGS="--account=<project_nnnnnnn> --partition=small" toil-cwl-runner \
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--jobStore $WORKDIR/<job store name> \
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--workDir $SCRATCH/<work dir name> \
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--tmpdir-prefix $TMPDIR/<tmp name> \

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