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build with latest netcdf #166
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Also if/when we decide to use PIO in CICE we'll need 4.7.0. |
Update - netCDF 4.7.1 has now been released. |
@russfiedler: "PIO can use NetCDF (version 4.6.1+)": https://github.com/NCAR/ParallelIO |
link to related PIO issue in CICE: COSIMA/cice5#34 |
@aekiss Actually, the problem is with the HDF5 library that NCI have linked V4.6.1 to. The bug is fixed in 1.10.4. It's likely we don't trigger the bug as it's related to processors failing to take part in the collective writes I think, but you never know... https://groups.google.com/forum/#!topic/parallelio/LE7qnAlhP38 |
note to self: NetCDF 4.7.1. install request: https://track.nci.org.au/servicedesk/customer/portal/5/HELP-163544 |
The NetCDF version would need to be updated in numerous places:
Have I missed anything?
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Netcdf 4.7.1 is now installed on raijin on top of hdf5/1.10.5. The parallel version, 4.7.1p (and hdf5/1.10.5p), is build with openmpi/4.0.1. |
Netcdf 4.7.1 was compiled with Intel 19 so the model components all need to be compiled with this version to use Netcdf 4.7.1. |
#178 builds with |
netCDF 4.7.3 is the latest currently installed on gadi, and we're currently compiling with netcdf/4.7.1 |
From @nichannah on slack
https://www.unidata.ucar.edu/software/netcdf/docs/RELEASE_NOTES.html#autotoc_md1 |
closing - we're now building access-om2 with |
from https://opus.nci.org.au/display/Help/Gadi%3A+NCI%27s+New+Supercomputer
"Only the latest versions of third-party software packages will be built and installed on the new HPC system."
so I guess we should get NCI to install netcdf 4.7.0 and build with that?
Also see #157, COSIMA/libaccessom2#24
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