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duplicate of #882 (comment) |
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From https://salmon.readthedocs.io/en/latest/file_formats.html#quantification-file ,
it says "If salmon was run with the --dumpEq option, then a file called eq_classes.txt will exist in the auxiliary directory"
my question is how do we run with --dumpEq option?
I am following steps described in https://combine-lab.github.io/salmon/getting_started/
and could get the results (the quants file) , but don't know where to put --dumpEq to get the Equivalence class file.
Thanks.
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