README.md

bayesR

Bayesian hierarchical model for complex trait analysis

Quick start

Clone:

git clone https://github.com/syntheke/bayesR.git

Compile:

in the src folder

gfortran -o bayesR RandomDistributions.f90 baymods.f90 bayesR.f90

Run:

The example is from the 14th QTL-MAS workshop. The simdata file in the example folder.

bayesR -bfile example/simdata -out simout -numit 10000 -burnin 5000 -seed 333

Help:

bayesR –help

Tell me more:

BayesRmanual-0.75.pdf

New:

A more efficient implementation of the BayesR model for larger data sets is provided in the software bayesRv2. For details see: fast(er)BayesR.pdf.

Compile:

in the src folder

ifort -O3 -static -openmp -o bayesRv2 RandomDistributions.f90 baymodsv2.f90 bayesRv2.f90