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README.md

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@@ -11,6 +11,8 @@ The package includes
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* Normality check (Shapiro Wilk test)
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* Volcano plot
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* Heatmap
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* PERMANOVA
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<img src="https://user-images.githubusercontent.com/77651662/126578553-f2d583db-d649-4db7-92bb-8cfa9433904a.PNG" width="400" height="350">
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</p>
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### Volcano plot
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```
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# Makes a subdirectory and saves Volcano plots for different combination of groups
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Test<-Allstats(Data)
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Volcano(Test,asterisk = "t-test")
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```
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<p align="center">
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<img src="https://user-images.githubusercontent.com/77651662/127811109-0cb273ba-3c01-4679-9cb3-c510f3176592.png" width="400" height="400">
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<img src="https://user-images.githubusercontent.com/77651662/127811667-980ee12e-ec12-4786-98b9-22b4c027f5c1.png" width="400" height="400">
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</p>
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##### Adjustable parameters
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* asterisk = "t-test" #statistics inheriting from Allstats "Scheffe", "t-test", "u-test", "Dunn"
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* reverse = T # T, F reverse the direction of fold change
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* fig_width = NA #figure size
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* fig_height = NA #figure size
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* FC_log = 2 # Fold change log transformation value
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* pval_log = 10 #p_value log transformation value
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* dotsize = 3 #dotsize
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* x_limit = c(-2,2) #x axis limt
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* y_limit =c(0,6) #y axis limit
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* pval_intercept = 0.05 # intercept for identification
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* sig_label = T # T,F label significant variables
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* color=c("#FF3300","#FF6600","#FFCC00") colors used for ggplots.
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### Heatmap
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```
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# Makes a subdirectory and saves Heatmap
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scaled_data<-D_tran(Data,param = "Auto")
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AS_heatmap(scaled_data) #data inheriting from D_tran

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