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BrooksLabUCSC

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  1. flair flair Public

    Full-Length Alternative Isoform analysis of RNA

    Python 213 71

  2. labtools labtools Public

    Small standalone scripts

    Python 9 2

  3. eVIP2 eVIP2 Public

    Forked from anbrooks/eVIP

    Expression-based variant impact phenotyping

    Python 5 2

  4. RNA-VaCay RNA-VaCay Public

    Wrapper and analysis scripts for RNA variant calling pipeline

    R 3 2

  5. splicedice splicedice Public

    A tool for detecting and quantifying alternative splicing with RNA-seq

    Python 2 3

  6. fastqc fastqc Public

    Dockerfile and wrapper script for FASTQC

    Shell

Repositories

Showing 10 of 16 repositories
  • flair Public

    Full-Length Alternative Isoform analysis of RNA

    BrooksLabUCSC/flair’s past year of commit activity
    Python 213 71 89 1 Updated Nov 14, 2024
  • splicedice Public

    A tool for detecting and quantifying alternative splicing with RNA-seq

    BrooksLabUCSC/splicedice’s past year of commit activity
    Python 2 BSD-3-Clause 3 2 2 Updated Oct 8, 2024
  • NEMO Public Forked from baigal628/NEMO

    a deep neural network model for mapping modifications in nanopore Long-read sequencing data

    BrooksLabUCSC/NEMO’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 8, 2024
  • addseq_manuscript Public Forked from baigal628/addseq_manuscript

    Chromatin accessibility profiling with small molecule intercalation and long-read sequencing

    BrooksLabUCSC/addseq_manuscript’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Mar 7, 2024
  • FLAIR-fusion Public Forked from cafelton/FLAIR-fusion
    BrooksLabUCSC/FLAIR-fusion’s past year of commit activity
    Python 0 2 0 0 Updated Aug 15, 2023
  • cawlr-rs Public Forked from bsaintjo/cawlr-rs

    Tool to analyze chromatin accessibility with long read sequencing technologies

    BrooksLabUCSC/cawlr-rs’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Jul 26, 2023
  • FLAIR-fusion-v2 Public Forked from cafelton/FLAIR-fusion-v2

    New version of long-read fusion isoform detection

    BrooksLabUCSC/FLAIR-fusion-v2’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jul 24, 2023
  • DM-DASE Public Forked from caeareva/DM-DASE

    A workflow for the discovery and analysis of novel splicing events in cancer

    BrooksLabUCSC/DM-DASE’s past year of commit activity
    R 0 1 0 0 Updated May 29, 2023
  • eVIP2 Public Forked from anbrooks/eVIP

    Expression-based variant impact phenotyping

    BrooksLabUCSC/eVIP2’s past year of commit activity
    Python 5 BSD-3-Clause 4 0 0 Updated Jul 19, 2022
  • RNA-VaCay Public

    Wrapper and analysis scripts for RNA variant calling pipeline

    BrooksLabUCSC/RNA-VaCay’s past year of commit activity
    R 3 2 1 0 Updated Jun 30, 2019
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