Merge pull request #166 from BiomedicalMachineLearning/fix_local

duypham2108 · web-flow · commit 45c1db0c9a87 · 2022-05-18T15:02:47.000+10:00
fix: DBSCAN min_samples error
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -11,6 +11,6 @@ repos:
     -   id: requirements-txt-fixer
 
 -   repo: https://github.com/psf/black
-    rev: 22.1.0
+    rev: 22.3.0
     hooks:
     -   id: black
diff --git a/stlearn/spatials/clustering/localization.py b/stlearn/spatials/clustering/localization.py
@@ -47,7 +47,7 @@ def localization(
 
         tmp = adata.obs[adata.obs[use_label] == i]
 
-        clustering = DBSCAN(eps=eps, min_samples=0, algorithm="kd_tree").fit(
+        clustering = DBSCAN(eps=eps, min_samples=1, algorithm="kd_tree").fit(
             tmp[["imagerow", "imagecol"]]
         )
 

Original file line number	Diff line number	Diff line change
`@@ -47,7 +47,7 @@ def localization(`
`47`	`47`
`48`	`48`	`tmp = adata.obs[adata.obs[use_label] == i]`
`49`	`49`
`50`		`- clustering = DBSCAN(eps=eps, min_samples=0, algorithm="kd_tree").fit(`
	`50`	`+ clustering = DBSCAN(eps=eps, min_samples=1, algorithm="kd_tree").fit(`
`51`	`51`	`tmp[["imagerow", "imagecol"]]`
`52`	`52`	`)`
`53`	`53`