The goal of specmine is to provide a set of methods for metabolomics
data analysis, including data loading in different formats,
pre-processing, metabolite identification, univariate and multivariate
data analysis, machine learning, feature selection and pathway analysis.
Case studies can be found on the website:
http://bio.di.uminho.pt/metabolomicspackage/index.html. This package
suggests ‘rcytoscapejs’, a package not in mainstream repositories. If
you need to install it, use:
devtools::install_github('cytoscape/r-cytoscape.js@v0.0.7').
You can install the released version of specmine from CRAN with:
install.packages("specmine")And the development version from GitHub with:
# install.packages("devtools")
devtools::install_github("BioSystemsUM/specmine")This is a basic example which shows you how to load the namespace of specmine and add it to your search list:
library(specmine)