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@BioSystemsUM

BiSBi @ Centre of Biological Engineering

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  1. DeepMol DeepMol Public

    DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

    Python 113 11

  2. MEWpy MEWpy Public

    Metabolic Engineering Workbench

    Python 37 12

  3. propythia propythia Public

    Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.

    Jupyter Notebook 28 9

  4. troppo troppo Public

    Reconstruction algorithms for Python

    Jupyter Notebook 22 5

  5. cobamp cobamp Public

    Constraint-based modeling framework for the enumeration of pathway analysis concepts

    Jupyter Notebook 14 2

  6. ReactEA ReactEA Public

    ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design

    Python 8 1

Repositories

Showing 10 of 29 repositories
  • BioSystemsUM/diel_models’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 15, 2024
  • DeepMol Public

    DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

    BioSystemsUM/DeepMol’s past year of commit activity
    Python 113 BSD-2-Clause 11 16 0 Updated Nov 13, 2024
  • troppo Public

    Reconstruction algorithms for Python

    BioSystemsUM/troppo’s past year of commit activity
    Jupyter Notebook 22 GPL-3.0 5 5 (1 issue needs help) 1 Updated Oct 23, 2024
  • BioSystemsUM/BioCatalyzer-CaseStudy’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 16, 2024
  • s2m2 Public

    Materials for the Summer School in Metabolic Modeling - 2024 edition

    BioSystemsUM/s2m2’s past year of commit activity
    Jupyter Notebook 5 GPL-2.0 2 0 0 Updated Jul 4, 2024
  • BioCatalyzer Public

    BioCatalyzer: a rule-based tool to predict compound metabolism

    BioSystemsUM/BioCatalyzer’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Jun 28, 2024
  • MEWpy Public

    Metabolic Engineering Workbench

    BioSystemsUM/MEWpy’s past year of commit activity
    Python 37 GPL-3.0 12 4 0 Updated Jun 9, 2024
  • deepmol_case_studies Public

    Case Studies from the DeepMol Publication

    BioSystemsUM/deepmol_case_studies’s past year of commit activity
    Jupyter Notebook 2 BSD-2-Clause 0 0 0 Updated Jun 4, 2024
  • biomeneco Public

    A project to accelerate gap-filling of metabolic models

    BioSystemsUM/biomeneco’s past year of commit activity
    1 MIT 0 0 1 Updated Dec 5, 2023
  • propythia Public

    Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.

    BioSystemsUM/propythia’s past year of commit activity
    Jupyter Notebook 28 GPL-3.0 9 0 2 Updated Sep 4, 2023

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