All learnrs adapted to svbox2022

Author: phgrosjean

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: BioDataScience2
-Version: 2022.0.0
+Version: 2022.1.0
 Title: A Series of Learnr Documents for Biological Data Science 2
 Description: Interactive documents using learnr for studying biological data science (second course).
 Authors@R: c(
@@ -13,7 +13,6 @@ Imports: learnitdown, BioDataScience, shiny, miniUI
 Suggests: SciViews, ggplot2, ggpubr, data.io, svMisc, svBase, svFlow, chart, covr, knitr, testthat, gradethis
 License: MIT + file LICENSE
 Encoding: UTF-8
-LazyData: true
 URL: https://github.com/BioDataScience-Course/BioDataScience2
 BugReports: https://github.com/BioDataScience-Course/BioDataScience2/issues
 Roxygen: list(markdown = TRUE)

NEWS.md

@@ -1,157 +1,163 @@
-# BioDataScience2 News
+# BioDataScience2 2022.1.0
 
-## Changes in version 2022.0.0
+-   All learnr exercices adapted and tested with svbox2022.
+
+# BioDataScience2 2022.0.0
 
 -   New version for the academic year 2022-2023.
 
-## Changes in version 2021.0.3
+# BioDataScience2 2021.0.3
 
--   Better hints in B03La_mod_lin.
+-   Better hints in **B03La_mod_lin**.
 
-## Changes in version 2021.0.2
+# BioDataScience2 2021.0.2
 
--   Correction of one quiz that had several answers set to `NA` in `B02La_reg_multi`.
+-   Correction of one quiz that had several answers set to `NA` in **B02La_reg_multi**.
 
-## Changes in version 2021.0.1
+# BioDataScience2 2021.0.1
 
--   Minor change in the template for an exercise in `B01Lb_reglin1`: it was not clear that `plot(correlation(....))` should be used because the template was just `correlation(....)`. Students had to look at hints to understand that.
+-   Minor change in the template for an exercise in **B01Lb_reglin1**: it was not clear that `plot(correlation(....))` should be used because the template was just `correlation(....)`. Students had to look at hints to understand that.
 
-## Changes in version 2021.0.0
+# BioDataScience2 2021.0.0
 
--   Start of 2021 series.
+-   Start of 2021 series for academic year 2021-2022.
 
 -   Moved from {learndown} to {learnitdown}.
 
-## Changes in version 2020.9.0
+# BioDataScience2 2020.9.0
 
--   A new tutorial B08La_mfa is added.
+-   A new tutorial **B08La_mfa** is added.
 
-## Changes in version 2020.8.2
+# BioDataScience2 2020.8.2
 
--   In the B07La_pca tutorial, chart\$<type>() does not work properly in specific cases. A work-around is introduced.
+-   In the **B07La_pca** tutorial, `chart$<type>()` does not work properly in specific cases. A work-around is introduced.
 
-## Changes in version 2020.8.1
+# BioDataScience2 2020.8.1
 
--   In the B07La_pca tutorial, chart\$<type>() does not work properly in specific cases. This is an attempt to fix it.
+-   In the **B07La_pca tutorial**, `chart$<type>()` does not work properly in specific cases. This is an attempt to fix it.
 
-## Changes in version 2020.8.0
+# BioDataScience2 2020.8.0
 
--   New tutorial B07La_pca in version 2.
+-   New tutorial **B07La_pca** in version 2.
 
 -   Praise sentences in English are eliminated from result outputs of {gradethis}.
 
-## Changes in version 2020.7.0
+# BioDataScience2 2020.7.0
+
+-   Tutorial **B06Lc_som** migrated to version 2.
+
+# BioDataScience2 2020.6.0
 
--   Tutorial B06Lc_som migrated to version 2.
+-   Tutorial **B06Lb_mds** migrated to version 2.
 
-## Changes in version 2020.6.0
+# BioDataScience2 2020.5.0
 
--   Tutorial B06Lb_mds migrated to version 2.
+-   Tutorial **B06La_kmeans** migrated to version 2.
 
-## Changes in version 2020.5.0
+# BioDataScience2 2020.4.1
 
--   Tutorial B06La_kmeans migrated to version 2.
+-   A bug in learnr that cannot run `chart$horizontal()` in **B05La_cah** is eliminated.
 
-## Changes in version 2020.4.1
+# BioDataScience2 2020.4.0
 
--   A bug in learnr that cannot run chart\$horizontal() in B05La_cah is eliminated.
+-   "Tutorial" **B99La_avis** added to get a quick feedback from the students.
 
-## Changes in version 2020.4.0
+-   Tutorial **B05La_cah** finalized.
 
--   "Tutorial" B99La_avis added to get a quick feedback from the students.
+# BioDataScience2 2020.3.1
 
--   Tutorial B05La_cah finalized
+-   Tutorials that are not in final stage are now placed in the **devel/** directory.
 
-## Changes in version 2020.3.1
+# BioDataScience2 2020.3.0
 
--   Tutorials that are not in final stage are now placed in the devel/ directory.
+-   New tutorial **B04La_nls**.
 
-## Changes in version 2020.3.0
+-   New Shiny apps **B04Sa_micmen**, **B04Sb_exponent**, **B04Sc_logis**, **B04Sd_gen_logis**, **B04Se_gompertz** and **B04Sf_richards**.
 
--   New tutorial B04La
+# BioDataScience2 2020.2.4
 
--   New shinyapps B04Sa, B04Sb, B04Sc, B04Sd, B04Se, B04Sf
+-   Minor correction in **B03La_mod_lin**.
 
-## Changes in version 2020.2.4
+# BioDataScience2 2020.2.3
 
--   Minor change in B03La_mod_lin
+-   Update **B03La_mod_lin**.
 
-## Changes in version 2020.2.3
+# BioDataScience2 2020.2.2
 
--   Update B03La_mod_lin
+-   Minor correction in **B02la_reg_multi**.
 
-## Changes in version 2020.2.2
+# BioDataScience2 2020.2.1
 
--   Minor change in B02la_reg_multi
+-   Minor correction in **B02lB_reg_poly**.
 
-## Changes in version 2020.2.1
+# BioDataScience2 2020.2.0
 
--   Minor change in B02lB_reg_poly
+-   Update **B02La_reg_multi** and **B02Lb_reg_poly**.
 
-## Changes in version 2020.2.0
+# BioDataScience2 2020.1.1
 
--   Update B02La_reg_multi and B02Lb_reg_poly
+-   Update all tutorials with SciViews Box 2020 and {BioDatascience} package.
 
-## changes in version 2020.1.1
+# BioDataScience2 2020.1.0
 
--   Update all tutorials with SciViews Box 2020 and BioDatascience packages
+-   Update **B01La_rappel** and **B01Lb_reglin1** for better interaction with the {gradethis} package.
 
-## Changes in version 2020.1.0
+# BioDataScience2 2020.0.0
 
--   Update B01La_rappel and B01Lb_reglin1 for better interaction with gradethis package.
+-   Preparation for accademic year 2020-2021.
 
-## Changes in version 2020.0.0
+-   Update all tutorials with SciViews Box 2020, and name change with **B01Xa_name**, with **'B'** refers to second course, **'01'** to first module, **'X'** being `L` for learnr or `S` for Shiny and **'a'** the sequence in case there are several similar items in the same module.
 
--   Update all tutorials with SciViews Box 2020, and name change with B01Xa_name, with 'B' refers to second course, '01' to first module, 'X' being `L` for learnr or `S` for Shiny and 'a' the sequence in case there are several similar items in the same module.
+-   RStudio addins for easier application selection.
 
--   RStudio addins.
+# BioDataScience2 2019.11.0
 
-## Changes in version 2019.11.0
+-   Tutorial **06b_mds** and **06c_som** added.
 
--   Tutorial 06b_mds
+# BioDataScience2 2019.11.0
 
--   Tutorial 06c_som
+-   Tutorial **06a_kmeans** added.
 
-## Changes in version 2019.11.0
+# BioDataScience2 2019.10.0
 
--   Tutorial 06a_kmeans
+-   Tutorial **05a_distance_matrix** finished.
 
-## Changes in version 2019.10.0
+# BioDataScience2 2019.9.0
 
--   Tutorial 05a_distance_matrix
+-   New Shiny app **04e_gompertz**.
 
-## Changes in version 2019.9.0
+# BioDataScience2 2019.8.0
 
--   New Shiny app 04e_gompertz
+-   Shiny app **04c_logis** and **04d_gen_logis** added.
 
-## Changes in version 2019.8.0
+# BioDataScience2 2019.7.0
 
--   Shiny app 04c 04d
+-   Shiny app **04a_michaelis_menten** and **04b_exponent** added.
 
-## Changes in version 2019.7.0
+# BioDataScience2 2019.6.0
 
--   Shiny app 04a_michaelis_menten and 04b_exponent
+-   Tutorial **03a_mod_lin** finalized.
 
-## Changes in version 2019.6.0
+# BioDataScience2 2019.5.0
 
--   Tutorial 03a_mod_lin finalized
+-   Tutorial **02a_reg_multi** finalized.
 
-## Changes in version 2019.5.0
+# BioDataScience2 2019.4.0
 
--   Tutorial 02a_reg_multi finalized
+-   Tutorial **02b_reg_poly** finalized.
 
-## Changes in version 2019.4.0
+# BioDataScience2 2019.3.0
 
--   Tutorial 02b_reg_poly finalized
+-   Tutorial **01b_reg_lin**: minor correction.
 
-## Changes in version 2019.3.0
+# BioDataScience2 2019.2.0
 
--   Tutorial 01b_reg_lin : minor correction
+-   Tutorial **01b_reg_lin** finalized.
 
-## Changes in version 2019.2.0
+# BioDataScience2 2019.1.0
 
--   Tutorial 01b_reg_lin finalized
+-   Tutorial **01a_rappel** finalized.
 
-## Changes in version 2019.1.0
+# BioDataScience2 2019.0.0
 
--   Tutorial 01a_rappel finalized
+-   First versioned version (first number is the academic year, e.g., 2019.0.0 is for academic year 2019-2020).