Merge pull request #213 from Big-Life-Lab/unused_files

Delete unused files, merge PR for issue #133.
Big-Life-Lab · Jan 31, 2022 · dcbee6e · dcbee6e
2 parents fdb7410 + 94919dc
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diff --git a/changelog.md b/changelog.md
@@ -1,5 +1,13 @@
 # Changelog
 
+## 2021-08-09 (update this date when merging to main)
+
+\*\*v1....
+
+**Variable changes (non-breaking changes)**
+
+- `index`: Change type from integer to string. Allows greter flexiblity for naming indexes.
+
 ## 2021-02-18
 
 **v1.1.0**
@@ -230,4 +238,4 @@ V0.0.2 - Breaking changes to metadata.
 
 ## 2020-10-09
 
-V0.0.1 - Initial variable names and labels.
+V0.0.1 - Initial variable names and labels.
diff --git a/data/wastewater_virus.csv b/data/wastewater_virus.csv
diff --git a/site/Variables.csv b/site/Variables.csv
@@ -37,7 +37,7 @@ WWMeasure,unit,Unit,Unit�,,,,category,Unit of the measurement.,Unit� de mesu
 WWMeasure,unitOther,Unit other,Unit� autre,,,,string,Description for other measurement unit not listed in unit.,Description d'une unit� de mesure ne faisant pas partie des options disponibles.
 WWMeasure,aggregation,Aggregation,Agr�gation,,,,category,"Statistical measures used to report the sample units of Ct/Cq, unless otherwise stated. Each aggregation has a corresponding value.",Indicateur statistique utilis�e pour rapporter la mesure effectu�e. Chaque agr�gation doit �tre report�e comme une mesure diff�rente (avec un identifiant diff�rent)
 WWMeasure,aggregationOther,Aggregation other,Agr�gation autre,,,,string,Description for other type of aggregation not listed in aggregation.,Description d'une agr�gation ne faisant pas partie des options disponibles.
-WWMeasure,index,Index,Index,,,,integer,Index number in case the measurement was taken multiple times.,Index de la mesure dans le cas o� la m�me mesure a �t� prise en replicata.
+WWMeasure,index,Index,Index,,,,string,Index number in case the measurement was taken multiple times.,Index de la mesure dans le cas o� la m�me mesure a �t� prise en replicata.
 WWMeasure,value,Value,Valeur,,,,float,"The actual value that is being reported for this measurement. Use ""NA"" for missing values and make sure to leave a note.","La valeur num�rique de la mesure effectu�e. Utilise ""NA"" pour les valeurs manquantes et laisser une note."
 WWMeasure,qualityFlag,Quality flag,Indicateur de mauvaise qualit�,,,,boolean,Does the reporter suspect the measurement having some quality issues,Le reporteur de la mesure suspecte-t-il que la mesure est de mauvaise qualit�?
 WWMeasure,accessToPublic,Access to public,Acc�s au public,,,,boolean,"If this is 'no', this data will not be available to the public. If missing, data will be available to the public.","Si ""Non"", la donn�e ne sera pas accessible par le public. Si ""Oui"" ou laiss� vide, la donn�e leur sera accessible."

diff --git a/src/README.md b/src/README.md
@@ -1,8 +1,6 @@
 # Script README
 
- Source files for :
-
-  - generating SQL file to create database
-  - generating metadata documentation in French and English
-  - Tool for validating input templates (todo)
-  - tool for mapping and importing data to database (todo)
+Source files for :
+
+- generating SQL file to create database
+- generating metadata documentation in French and English
diff --git a/src/junk.r b/src/junk.r
diff --git a/src/mappers/NML_mapper.r b/src/mappers/NML_mapper.r
diff --git a/src/mappers/Ottawa_mapper.r b/src/mappers/Ottawa_mapper.r
diff --git a/src/mappers/README.md b/src/mappers/README.md
@@ -1 +1,3 @@
-These mappers have been replaced and are no longer supported. Link to new mappers will be added.
+Mappers transform a lab's existing data -- usually an MS Excel or CSV file -- into ODM formatted data.
+
+See [link](https://github.com/jeandavidt/ODM-Import/) for example mappers.Additional mapping framework will be added in spring 2022 with ODM version 2.
diff --git a/src/mappers/UW_mapper.r b/src/mappers/UW_mapper.r
diff --git a/src/mappers/statscan_Variables.csv b/src/mappers/statscan_Variables.csv