cleaning up, use new repo

Author: poldrack

make_workflow/Makefile

@@ -0,0 +1,20 @@
+# Simple Correlation Workflow using Make
+#
+# Usage:
+#   make all              - Run full workflow
+#   make clean            - Remove output directory
+
+OUTPUT_DIR ?= ./output
+
+.PHONY: all clean
+
+all:
+	mkdir -p $(OUTPUT_DIR)/data $(OUTPUT_DIR)/results $(OUTPUT_DIR)/figures
+	uv run python scripts/download_data.py $(OUTPUT_DIR)/data
+	uv run python scripts/filter_data.py $(OUTPUT_DIR)/data
+	uv run python scripts/join_data.py $(OUTPUT_DIR)/data
+	uv run python scripts/compute_correlation.py $(OUTPUT_DIR)/data $(OUTPUT_DIR)/results
+	uv run python scripts/generate_heatmap.py $(OUTPUT_DIR)/results $(OUTPUT_DIR)/figures
+
+clean:
+	rm -rf $(OUTPUT_DIR)

simple_workflow/__init__.py make_workflow/__init__.pysimple_workflow/__init__.py renamed to make_workflow/__init__.py

@@ -10,9 +10,7 @@
 
 import pandas as pd
 
-from bettercode.simple_workflow.correlation import (
-    compute_spearman_correlation,
-)
+from bettercode.simple_workflow import compute_spearman_correlation
 
 
 def main():

make_workflow/output/figures/correlation_heatmap.png

@@ -10,9 +10,7 @@
 
 import pandas as pd
 
-from bettercode.simple_workflow.filter_data import (
-    filter_numerical_columns,
-)
+from bettercode.simple_workflow import filter_numerical_columns
 
 
 def main():

make_workflow/output/results/correlation_matrix.csv

@@ -10,9 +10,7 @@
 
 import pandas as pd
 
-from bettercode.simple_workflow.visualization import (
-    generate_clustered_heatmap,
-)
+from bettercode.simple_workflow import generate_clustered_heatmap
 
 
 def main():

…_workflow/scripts/compute_correlation.py …_workflow/scripts/compute_correlation.pysimple_workflow/make_workflow/scripts/compute_correlation.py renamed to make_workflow/scripts/compute_correlation.py simple_workflow/make_workflow/scripts/compute_correlation.py renamed to make_workflow/scripts/compute_correlation.py

@@ -10,7 +10,7 @@
 
 import pandas as pd
 
-from bettercode.simple_workflow.join_data import join_dataframes
+from bettercode.simple_workflow import join_dataframes
 
 
 def main():