feat: optimize TFCE processing with 4x performance improvement #1
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test | |
| on: | |
| push: | |
| branches: [ main, dev/* ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.12", "3.13"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v4 | |
| with: | |
| version: "latest" | |
| - name: Install dependencies | |
| run: uv sync --all-extras | |
| - name: Run pre-commit hooks | |
| run: uv run pre-commit run --all-files | |
| - name: Run tests with coverage | |
| run: uv run pytest --cov=src/accelperm --cov-report=xml --cov-report=html | |
| - name: Upload coverage to Codecov | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| name: codecov-umbrella | |
| fail_ci_if_error: false | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v4 | |
| with: | |
| version: "latest" | |
| - name: Install dependencies | |
| run: uv sync --all-extras | |
| - name: Check formatting with ruff | |
| run: uv run ruff format --check . | |
| - name: Lint with ruff | |
| run: uv run ruff check . | |
| - name: Type check with mypy | |
| run: uv run mypy src/accelperm --ignore-missing-imports |