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Add parameters for allele coverage and identity #9

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dfornika opened this issue Oct 18, 2022 · 0 comments · Fixed by #10
Closed

Add parameters for allele coverage and identity #9

dfornika opened this issue Oct 18, 2022 · 0 comments · Fixed by #10

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@dfornika
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We've currently hard-coded a requirement that there must be a 100% coverage and identity match in order to call an allele. We could add parameters that would allow the user to control those thresholds.
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Add min_identity and min_coverage params BCCDC-PHL/kma-cgmlst
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@dfornika