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@AustralianBioCommons

AustralianBioCommons

Documentation for the development, deployment and/or optimisation of key community-endorsed bioinformatics tools and workflows
README.md

Welcome to the Australian BioCommons GitHub 👋

Here you'll find links to our technical documentation and code repositories that support several of our activities and services. Visit the BioCommons website to browse all activities, services and events. If you need further help or can't find what you're looking for here, let us know by emailing contact@biocommons.org.au

Technical documentation

Public repositories

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  1. doc_guidelines doc_guidelines Public template

    A set of guidelines for documenting bioinformatics tools and workflows

    6 5

  2. how-to-hub how-to-hub Public

    This central hub links to step-by-step How-to Guides, and associated documents, that support the reuse of bioinformatics tools, workflows and data on Australian compute systems and digital research…

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  3. guide-template guide-template Public template

    GitHub repository template for new How-to Guide websites.

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Repositories

Showing 10 of 114 repositories
  • galaxy Public Forked from galaxyproject/galaxy

    Data intensive science for everyone.

    AustralianBioCommons/galaxy’s past year of commit activity
    Python 0 1,140 0 1 Updated Nov 24, 2025
  • aai-backend Public

    The backend library between Auth0 and the AAI portal front end.

    AustralianBioCommons/aai-backend’s past year of commit activity
    Python 0 0 0 2 Updated Nov 24, 2025
  • aai-portal Public
    AustralianBioCommons/aai-portal’s past year of commit activity
    TypeScript 0 0 0 1 Updated Nov 24, 2025
  • ables Public

    Australian BioCommons Leadership Share (ABLeS) documentation

    AustralianBioCommons/ables’s past year of commit activity
    HTML 1 11 2 1 Updated Nov 24, 2025
  • sbp-portal Public
    AustralianBioCommons/sbp-portal’s past year of commit activity
    TypeScript 0 0 0 0 Updated Nov 24, 2025
  • omix3-file-upload Public

    uploading files to S3-compatible storage and updates the corresponding Indexd records using Gen3 SDK commands.

    AustralianBioCommons/omix3-file-upload’s past year of commit activity
    Python 0 0 0 0 Updated Nov 18, 2025
  • acdc-data-portal Public Forked from uc-cdis/data-portal

    Windmill: data portal for metadata submission and query

    AustralianBioCommons/acdc-data-portal’s past year of commit activity
    JavaScript 0 Apache-2.0 52 0 0 Updated Nov 18, 2025
  • gen3-infra-bootstrap Public

    bootstrap shared Gen3 infrastructure (S3/SQS/SNS/etc.) and write the AWS Secrets Manager entries consumed by External Secrets Operator (ESO)

    AustralianBioCommons/gen3-infra-bootstrap’s past year of commit activity
    TypeScript 0 Apache-2.0 0 0 0 Updated Nov 15, 2025
  • atol Public

    This repository hosts documentation for the Australian Tree of Life infrastructure capability project.

    AustralianBioCommons/atol’s past year of commit activity
    SCSS 0 MIT 0 1 0 Updated Nov 12, 2025
  • acdc-schema-json Public

    Contains the jsonschema for the Australian Cardiovascular Disease Project

    AustralianBioCommons/acdc-schema-json’s past year of commit activity
    Python 1 1 1 0 Updated Nov 12, 2025
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