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orthofinder missing in docker image? #3

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emilpaulitz opened this issue Aug 16, 2024 · 0 comments
Open

orthofinder missing in docker image? #3

emilpaulitz opened this issue Aug 16, 2024 · 0 comments

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@emilpaulitz
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Hi!

Thank you for making this great and comprehensive tool.

I want to first make an orthology-based run, just for testing now. I pulled the docker image docker://dyliss/aureme-img:2.4 with singularity. The files are fine with check_input, but when I run aureme --run=Tibet-0 --cmd="orthology_based", it says orthofinder: command not found. Am I missing something or is the docker image incomplete?

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