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Commits on Dec 16, 2025

• Update citation and conda install badge counts

  AstrobioMike

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  157683d

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Commits on Oct 25, 2025

• Update README.md

  AstrobioMike

  authored
  03a5ec3

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Commits on Aug 6, 2025

• Update README.md

  AstrobioMike

  authored
  f19b1bc

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Commits on Jul 9, 2025

• fix to gtt-get-accessions-from-GTDB thanks to note from @MariaAVC

  AstrobioMike

  committed
  8737707

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Commits on Jun 27, 2025

• Update CHANGELOG.md

  AstrobioMike

  authored
  70b992f

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• Update CHANGELOG.md

  AstrobioMike

  authored
  08c303f

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• updating changelog

  

  Mike Lee

  authored and

  Mike Lee

  committed
  ab0431a

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• other location to adjust for gtdb cert failure (in my currently grossly redundant code)

  

  Mike Lee

  authored and

  Mike Lee

  committed
  4b1e958

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• also generating a partitions file in nexus format now, thanks to note from @Stian-2rz (#108)

  

  Mike Lee

  authored and

  Mike Lee

  committed
  4c356c6

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• addressing certificate failed issue and adding flag to pull from other location to `bit-get-accessions-from-GTDB` thanks to #107

  AstrobioMike

  committed
  3d3b82d

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Commits on May 22, 2025

• Update README.md

  AstrobioMike

  authored
  b78d0a2

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Commits on Apr 21, 2025

• Update CHANGELOG.md

  AstrobioMike

  authored
  16032e0

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• adjustment to taxonkit call to account for new NCBI tax structure

  

  Mike Lee

  authored and

  Mike Lee

  committed
  5853987

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Commits on Mar 18, 2025

• Update CHANGELOG.md

  AstrobioMike

  authored
  1991332

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• temporary fix for https://github.com/AstrobioMike/GToTree/issues/104

  

  Mike Lee

  authored and

  Mike Lee

  committed
  2761b58

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Commits on Mar 11, 2025

• Update CHANGELOG.md

  AstrobioMike

  authored
  60c5daa

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• changing links for GTDB downloads for better overall performance

  AstrobioMike

  committed
  3a00e96

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Commits on Mar 10, 2025

• Update CHANGELOG.md

  AstrobioMike

  authored
  735c7d6

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• adding VeryFastTree thanks to suggestion from @jianshu93 (https://github.com/AstrobioMike/GToTree/issues/96)

  

  Mike Lee

  authored and

  Mike Lee

  committed
  6d997f9

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Commits on Feb 21, 2025

• Update CHANGELOG.md

  AstrobioMike

  authored
  42eb3e2

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• Update CHANGELOG.md

  AstrobioMike

  authored
  5975270

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• removing spaces from output files from (https://github.com/AstrobioMike/GToTree/issues/89)

  

  Mike Lee

  authored and

  Mike Lee

  committed
  f23fa42

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Commits on Feb 3, 2025

• removing debugging statements

  

  Mike Lee

  authored and

  Mike Lee

  committed
  87d646e

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• Merge pull request #102 from AstrobioMike/saving-ncbi-downloads

  Show description for b2aed09
  AstrobioMike

  authored
  b2aed09

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• storing ncbi downloads in debug mode

  

  Mike Lee

  authored and

  Mike Lee

  committed
  bdc53ff

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Commits on Jan 31, 2025

• working on storing ncbi downloads in debug mode

  

  Mike Lee

  authored and

  Mike Lee

  committed
  8201ff3

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• Update README.md

  AstrobioMike

  authored
  f75ba88

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• adding github action full-run test

  

  Mike Lee

  authored and

  Mike Lee

  committed
  be00dca

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• updating github action

  

  Mike Lee

  authored and

  Mike Lee

  committed
  a7ba8af

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• updating github action

  

  Mike Lee

  authored and

  Mike Lee

  committed
  8458434

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• updating github action

  

  Mike Lee

  authored and

  Mike Lee

  committed
  2a933de

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• updating github action

  

  Mike Lee

  authored and

  Mike Lee

  committed
  1904915

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• adding some logic to catch if muscle doesn't produce an alignment (https://github.com/AstrobioMike/GToTree/issues/101)

  

  Mike Lee

  authored and

  Mike Lee

  committed
  2ad2d27

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• Update README.md

  AstrobioMike

  authored
  ca1d9fe

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Commits on Jan 14, 2025

• Update README.md

  AstrobioMike

  authored
  c79f28c

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