updated recipe

Author: Tobias Andermann

README.md

@@ -62,7 +62,7 @@ conda create -n secapr_env secapr
 ### RECENT INSTALLATION ISSUES
 In case the above command results in an endless wait while conda is trying to solve the environment, something is not working the way it should with the conda environment creation (we are currenlty investigating what causes this issue for some users).
 
-Instead you can install the SECAPR environment directly from the GitHub repo. For this first download the file containing the installation instructions with `wget` and execute it with `sh`.
+Instead you can install the SECAPR environment directly from the GitHub repo. For this, first download the file containing the installation instructions with `wget` and execute it with `sh`.
 
 If you don't have `wget` installed on your computer you can install it with `conda install wget`.
 

docs/.DS_Store

@@ -5,6 +5,8 @@ conda create -y -n secapr_env python=3.8
 sleep 5
 source activate secapr_env
 sleep 5
+conda activate secapr_env
+sleep 5
 conda install -y pandas
 conda install -y matplotlib-base
 conda install -y biopython
@@ -19,4 +21,5 @@ conda install -y emboss
 conda install -y bwa
 conda install -y samtools==1.9
 conda install -y trimal
-pip install https://github.com/AntonelliLab/seqcap_processor/archive/refs/tags/v2.2.3.tar.gz
+conda install -y secapr
+#pip install https://github.com/AntonelliLab/seqcap_processor/archive/refs/tags/v2.2.3.tar.gz