Skip to content
@AllenNeuralDynamics

Allen Institute for Neural Dynamics

we're hiring: https://alleninstitute.org/careers/

Popular repositories Loading

  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 25 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 10 4

  4. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 10 6

  5. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 7

  6. exa-spim-hardware exa-spim-hardware Public

    7

Repositories

Showing 10 of 392 repositories
  • openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    AllenNeuralDynamics/openscope-community-predictive-processing’s past year of commit activity
    Python 10 MIT 6 20 1 Updated May 8, 2025
  • AllenNeuralDynamics/aind-file-standards’s past year of commit activity
    0 MIT 0 7 3 Updated May 8, 2025
  • aind-dynamic-foraging-data-utils Public

    Tools for the analysis of behavior and neural data from the dynamic foraging task

    AllenNeuralDynamics/aind-dynamic-foraging-data-utils’s past year of commit activity
    Python 2 MIT 0 27 (1 issue needs help) 1 Updated May 8, 2025
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity
    Python 5 MIT 4 48 (1 issue needs help) 5 Updated May 8, 2025
  • AllenNeuralDynamics/dynamicrouting-decoding-tests’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 8, 2025
  • aind-data-upload-utils Public

    Library of utility methods to facilitate file uploads, such as partitioning directories.

    AllenNeuralDynamics/aind-data-upload-utils’s past year of commit activity
    Python 0 MIT 0 3 1 Updated May 8, 2025
  • AIND-CNC-BCI-Workshop Public

    Data and materials for the AIND - CNC Workshop held May 14, 2025 and the CoNectome Neurohackathon May 16-18

    AllenNeuralDynamics/AIND-CNC-BCI-Workshop’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 8, 2025
  • brainwasher Public

    0354: control software for automated tissue clearing system

    AllenNeuralDynamics/brainwasher’s past year of commit activity
    Python 0 MIT 0 14 0 Updated May 8, 2025
  • AllenNeuralDynamics/dynamicrouting-encoding-standalone’s past year of commit activity
    Python 0 MIT 3 0 0 Updated May 7, 2025
  • aind-SmartSPIM-segmentation Public

    segmentation module for SmartSPIM cloud pipeline

    AllenNeuralDynamics/aind-SmartSPIM-segmentation’s past year of commit activity
    Python 2 MIT 1 2 0 Updated May 7, 2025

Top languages

Loading…

Most used topics

Loading…