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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 23 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    Code Ocean pipeline for processing extracellula electrophysiology data

    Nextflow 7 2

  4. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  5. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

  6. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating a predicted segmentation of neural arbors by using skeleton-based metrics. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentatio…

    Python 5

Repositories

Showing 10 of 283 repositories
  • aind-exaSPIM-pipeline-utils Public

    ExaSPIM pipeline components primarily to be installed in Code Ocean capsules

    AllenNeuralDynamics/aind-exaSPIM-pipeline-utils’s past year of commit activity
    Python 0 MIT 1 5 1 Updated Nov 16, 2024
  • aind-dynamic-foraging-models Public

    behavioral models for the dynamic foraging task

    AllenNeuralDynamics/aind-dynamic-foraging-models’s past year of commit activity
    Jupyter Notebook 1 MIT 0 2 2 Updated Nov 16, 2024
  • aind-metadata-service Public

    Service to retrieve Labtracks/Sharepoint info using a REST API

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 22 1 Updated Nov 16, 2024
  • Bonsai.AllenNeuralDynamics Public

    A Bonsai package for version control and manipulation of Git repositories

    AllenNeuralDynamics/Bonsai.AllenNeuralDynamics’s past year of commit activity
    C# 0 0 7 2 Updated Nov 16, 2024
  • AllenNeuralDynamics/exaspim-control’s past year of commit activity
    Python 1 MIT 0 3 0 Updated Nov 16, 2024
  • view Public

    Model/View for exa-spim

    AllenNeuralDynamics/view’s past year of commit activity
    Python 3 1 10 1 Updated Nov 16, 2024
  • aind-ephys-processing-qc Public

    CodeOcean Capsule for ephys quality control

    AllenNeuralDynamics/aind-ephys-processing-qc’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 16, 2024
  • aind-watchdog-service Public

    Data staging service that prepares acquistion data for cloud upload to Amazon S3 and Code Ocean processing.

    AllenNeuralDynamics/aind-watchdog-service’s past year of commit activity
    Python 2 MIT 1 19 1 Updated Nov 16, 2024
  • aind-ephys-rig-qc Public

    Post-experiment temporal alignment and quality control

    AllenNeuralDynamics/aind-ephys-rig-qc’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 16, 2024
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper’s past year of commit activity
    Python 0 MIT 2 19 1 Updated Nov 16, 2024

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