Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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aind-ephys-pipeline
aind-ephys-pipeline PublicCode Ocean pipeline for processing extracellula electrophysiology data
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating a predicted segmentation of neural arbors by using skeleton-based metrics. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentatio…
Python 5
Repositories
- aind-exaSPIM-pipeline-utils Public
ExaSPIM pipeline components primarily to be installed in Code Ocean capsules
AllenNeuralDynamics/aind-exaSPIM-pipeline-utils’s past year of commit activity - Bonsai.AllenNeuralDynamics Public
A Bonsai package for version control and manipulation of Git repositories
AllenNeuralDynamics/Bonsai.AllenNeuralDynamics’s past year of commit activity - exaspim-control Public
AllenNeuralDynamics/exaspim-control’s past year of commit activity - aind-watchdog-service Public
Data staging service that prepares acquistion data for cloud upload to Amazon S3 and Code Ocean processing.
AllenNeuralDynamics/aind-watchdog-service’s past year of commit activity