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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 28 19

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 26 9

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 16 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 13 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 11 3

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

Repositories

Showing 10 of 559 repositories
  • aind-disrnn-result-access Public

    Access disRN results from W&B and perform post-hoc analysis

    AllenNeuralDynamics/aind-disrnn-result-access’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 7, 2026
  • AutoTomeQC Public

    Automates sectioning quality control for the Prototome/Pylasso. Analyzes block face images to grade cuts (Go/No-Go/Unsure) based on knife marks, splits, thickness, etc.

    AllenNeuralDynamics/AutoTomeQC’s past year of commit activity
    Python 0 MIT 0 7 0 Updated Feb 7, 2026
  • aind-dft-ephys-analysis Public

    shared library for dynamic foraging task (DFT) - neuropixels analysis

    AllenNeuralDynamics/aind-dft-ephys-analysis’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 7, 2026
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging’s past year of commit activity
    C# 0 MIT 0 3 2 Updated Feb 7, 2026
  • aind-metadata-viz Public

    Website for public metadata visualization

    AllenNeuralDynamics/aind-metadata-viz’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Feb 7, 2026
  • AllenNeuralDynamics/posetail-preprocessing’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Feb 6, 2026
  • aind-nwb-utils Public

    Useful functions for reading and writing NWB files

    AllenNeuralDynamics/aind-nwb-utils’s past year of commit activity
    Python 1 MIT 0 12 2 Updated Feb 6, 2026
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 28 MIT 19 42 5 Updated Feb 6, 2026
  • aind-hcr-qc Public

    Code to generate QC plots for HCR data

    AllenNeuralDynamics/aind-hcr-qc’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 6, 2026
  • Aind.Physiology.Hsfp Public

    A repository for the Hyper-Spectral Fiber Photometry (HSFP) system

    AllenNeuralDynamics/Aind.Physiology.Hsfp’s past year of commit activity
    C# 1 MIT 0 0 0 Updated Feb 6, 2026