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Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 25 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 9 4

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 7

  5. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 6 3

  6. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

Repositories

Showing 10 of 380 repositories
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 25 MIT 17 32 5 Updated Apr 15, 2025
  • Aind.Behavior.CoreAnalysis Public

    A repository with core primitives for analysis shared across `Aind.Behavior` tasks

    AllenNeuralDynamics/Aind.Behavior.CoreAnalysis’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Apr 15, 2025
  • lamf-analysis-sipe Public Forked from AllenNeuralDynamics/lamf-analysis

    Place for scientists & engineers on ophys-mFish projects (Learning mFISH, omFISH) to put ophys data processing development code, especially as a place to ease transition from LIMS to Codeocean

    AllenNeuralDynamics/lamf-analysis-sipe’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Apr 15, 2025
  • openscope-crossv2species Public Forked from AllenInstitute/openscope-crossv2species

    Stimulus and sequence generation code for the crossv2species OpenScope project.

    AllenNeuralDynamics/openscope-crossv2species’s past year of commit activity
    Python 0 GPL-3.0 5 0 0 Updated Apr 15, 2025
  • aind-slurm-rest Public

    Auto-generated python code to interface with the slurm cluster

    AllenNeuralDynamics/aind-slurm-rest’s past year of commit activity
    0 MIT 0 2 1 Updated Apr 15, 2025
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper’s past year of commit activity
    Python 0 MIT 2 31 5 Updated Apr 15, 2025
  • LCNE-patchseq-analysis Public

    Library for analyzing patch-seq data from LC-NE

    AllenNeuralDynamics/LCNE-patchseq-analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 15, 2025
  • aind-metadata-service Public

    Service to retrieve Labtracks/Sharepoint info using a REST API

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 12 1 Updated Apr 14, 2025
  • aind-dynamic-foraging-basic-analysis Public

    compute behavioral metrics and generate basic plottings for the dynamic foraging task

    AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis’s past year of commit activity
    Python 0 MIT 0 23 2 Updated Apr 14, 2025
  • aind-data-asset-indexer Public
    AllenNeuralDynamics/aind-data-asset-indexer’s past year of commit activity
    Python 0 MIT 0 8 (1 issue needs help) 0 Updated Apr 14, 2025
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