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Minor changes to documentation following OpenMPI update.
Small changes to match GUIDEs
Edits to match GUIDEs in main repository
Documentation accompanying minor improvement highlighting alternative codings for pair_distribution.py
Minor changes to GUIDE reflecting new Open MPI version
Added DOI links to referenced publications + corrected typos
Added DOI links to referenced publications
Added documentation of Python versions of linked-list MD modules
minor edits
Added Fortran and Python pages