From 70ab037e9932fa0edc090051713e256ae5199191 Mon Sep 17 00:00:00 2001
From: Alicen Henning <alicen.jhb@gmail.com>
Date: Sun, 1 Sep 2024 17:58:32 +0200
Subject: [PATCH] Correction in limiric core to input resolution as parameter
 for limiric calculation

---
 .Rhistory        | 14 ++++++++++++++
 R/limiric_core.R |  1 +
 2 files changed, 15 insertions(+)

diff --git a/.Rhistory b/.Rhistory
index fe0b43b..80090cf 100644
--- a/.Rhistory
+++ b/.Rhistory
@@ -11,3 +11,17 @@ usethis::use_github_action("check-standard")
 devtools::build()
 usethis::use_news_md()
 usethis::use_cran_comments()
+packages <- c("cowplot", "devtools", "dplyr", "ggplot2", "Matrix", "png", "Seurat", "SoupX")
+for (pkg in packages) {
+if (!requireNamespace(pkg, quietly = TRUE)) {
+install.packages(pkg)
+}
+}
+install.packages("ks")
+library(ks)
+install.packages("mclust")
+install.packages("mclust")
+library(mclust)
+install.packages("dplyr")
+install.packages("dplyr")
+library(dplyr)
diff --git a/R/limiric_core.R b/R/limiric_core.R
index 6e7b08f..c8cf845 100644
--- a/R/limiric_core.R
+++ b/R/limiric_core.R
@@ -338,6 +338,7 @@ limiric_core <- function(
 
   limiric_output <- limiric_calculation(organism = organism,
                                   Seurat = Seurat,
+                                  resolution = resolution,
                                   annotations = annotations,
                                   initial_cells = initial_cells,
                                   project_name = project_name,