forked from csoneson/ARMOR
-
Notifications
You must be signed in to change notification settings - Fork 0
/
NEWS
executable file
·64 lines (50 loc) · 1.35 KB
/
NEWS
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
v1.5.4
======
o Specify tbb version 2020.2 based on issue with salmon in conda (https://twitter.com/dpryan79/status/1368116490801717251)
v1.5.3
======
o Update syntax based on suggestions from snakemake --lint
o Update software versions
o Use built-in cpm() function from edgeR
v1.5.2
======
o Fix pandoc version to 2.10 (thanks @carissableker, https://github.com/csoneson/ARMOR/pull/101)
v1.5.1
======
o Specify channel in environment_R.yaml
v1.5.0
======
o Transition to R 4.0
o Use convenience function from tximeta to create DGEList for DE
v1.4.0
======
o Add possibility to provide additional arguments to STAR and Salmon
v1.3.2
======
o Fix small bug in edgeR script, triggered when no gene sets were provided
v1.3.1
======
o Adjust code for the latest version 7.0.1 of the msigdbr R package
o Fix bug to make sure that camera is not run with an empty gene set list
v1.3.0
======
o Change CPM calculations in edgeR_dge.Rmd to account for average transcript length offsets, using the approach from csaw::calculateCPM()
v1.2.3
======
o Rename rules for clarity
o Add benchmarks directive
v1.2.2
======
o Add sticker to README
v1.2.1
======
o Change deprecated pandas.read_table to pandas.read_csv
v1.2.0
======
o Add possibility to use multiple cores for DRIMSeq and R package installation
v1.1.0
======
o Extend checks of inputs
v1.0.0
======
o Initial version